Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_1005 ID=scaffold_1005-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 928

Length: 1547
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35


Found at i:1095 original size:12 final size:11

Alignment explanation


    Indices: 1060--1093  Score: 50
    Period size: 11  Copynumber: 3.1  Consensus size: 11

       1050 TTTTTCTTTG

                     * 
       1060 ATTTTTTTCGA
          1 ATTTTTTTCAA

            *          
       1071 TTTTTTTTCAA
          1 ATTTTTTTCAA

                       
       1082 ATTTTTTTCAA
          1 ATTTTTTTCAA

             
       1093 A
          1 A

       1094 ATCTTCTTAC


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  11   20  1.00

ACGTcount: A:0.24, C:0.09, G:0.03, T:0.65


Consensus pattern (11 bp):   
ATTTTTTTCAA
Done.