Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_1030 ID=scaffold_1030-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 851

Length: 1419
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30


Found at i:519 original size:13 final size:12

Alignment explanation


    Indices: 486--517  Score: 64
    Period size: 12  Copynumber: 2.7  Consensus size: 12

        476 ACGAGATTGT

                        
        486 AAAAAAAATTCG
          1 AAAAAAAATTCG

                        
        498 AAAAAAAATTCG
          1 AAAAAAAATTCG

                    
        510 AAAAAAAA
          1 AAAAAAAA

        518 ATATATATAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   20  1.00

ACGTcount: A:0.75, C:0.06, G:0.06, T:0.12


Consensus pattern (12 bp):   
AAAAAAAATTCG
Done.