Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_1031 ID=scaffold_1031-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 845

Length: 1409
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.29


Found at i:610 original size:7 final size:7

Alignment explanation


    Indices: 600--626  Score: 54
    Period size: 7  Copynumber: 3.9  Consensus size: 7

        590 GATTATGGAT

                   
        600 GTGCAGG
          1 GTGCAGG

                   
        607 GTGCAGG
          1 GTGCAGG

                   
        614 GTGCAGG
          1 GTGCAGG

                  
        621 GTGCAG
          1 GTGCAG

        627 TGTGTGGATT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   20  1.00

ACGTcount: A:0.15, C:0.15, G:0.56, T:0.15


Consensus pattern (7 bp):   
GTGCAGG

Done.