Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_1032 ID=scaffold_1032-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 842

Length: 1404
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.36


Found at i:952 original size:3 final size:3

Alignment explanation


    Indices: 944--992  Score: 98
    Period size: 3  Copynumber: 16.3  Consensus size: 3

        934 AATTATATTC

                                                                           
        944 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
          1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT

             
        992 T
          1 T

        993 TGAATTATGG


Statistics
Matches: 46,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   46  1.00

ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67


Consensus pattern (3 bp):   
TAT

Done.