Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_1034 ID=scaffold_1034-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 829

Length: 1383
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40


Found at i:692 original size:74 final size:73

Alignment explanation


    Indices: 541--773  Score: 430
    Period size: 74  Copynumber: 3.2  Consensus size: 73

        531 TTTATTGCAA

                                     *                                       
        541 AAACGCCGCAAAAGTTTAACCAAAATGACTTCGTTTTTATACTGTTTATTGGTATTAGCGGCGTT
          1 AAACGCCGCAAAAGTTTAACCAAAACGACTTCGTTTTTATACTGTTTATTGGTATTAGCGGCGTT

                   *
        606 TCTGGTAA
         66 TCTGGTAC

                                                                             
        614 AAACGCCGCAAAAGTTTAACCAAAACGACTTCGTTTTGTATACTGTTTATTGGTATTAGCGGCGT
          1 AAACGCCGCAAAAGTTTAACCAAAACGACTTCGTTTT-TATACTGTTTATTGGTATTAGCGGCGT

                     
        679 TTCTGGTAC
         65 TTCTGGTAC

                                                                             
        688 AAACGCCGCAAAAGTTTAACCAAAACGACTTCGTTTTTTATACTGTTTATTGGTATTAGCGGCGT
          1 AAACGCCGCAAAAGTTTAACCAAAACGACTTCG-TTTTTATACTGTTTATTGGTATTAGCGGCGT

                     
        753 TTCTGGTAC
         65 TTCTGGTAC

                        
        762 AAACGCCGCAAA
          1 AAACGCCGCAAA

        774 TGATAGTTAT


Statistics
Matches: 156,  Mismatches: 2, Indels: 3
        0.97            0.01        0.02

Matches are distributed among these distances:
  73   36  0.23
  74  116  0.74
  75    4  0.03

ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33


Consensus pattern (73 bp):   
AAACGCCGCAAAAGTTTAACCAAAACGACTTCGTTTTTATACTGTTTATTGGTATTAGCGGCGTT
TCTGGTAC
Done.