Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_1054 ID=scaffold_1054-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7755
ACGTcount: A:0.07, C:0.02, G:0.02, T:0.05

Warning! 6518 characters in sequence are not A, C, G, or T


Found at i:268 original size:10 final size:10

Alignment explanation


    Indices: 253--294  Score: 50
    Period size: 10  Copynumber: 4.2  Consensus size: 10

        243 AAATATAGAA

                      
        253 ATATATAAGT
          1 ATATATAAGT

             *      * 
        263 ACATATAAAT
          1 ATATATAAGT

                       
        273 ATATATATA-T
          1 ATATATA-AGT

                      
        283 ATATATAAGT
          1 ATATATAAGT

              
        293 AT
          1 AT

        295 GTATGTACAT


Statistics
Matches: 27,  Mismatches: 3, Indels: 4
        0.79            0.09        0.12

Matches are distributed among these distances:
   9    1  0.04
  10   25  0.93
  11    1  0.04

ACGTcount: A:0.52, C:0.02, G:0.05, T:0.40


Consensus pattern (10 bp):   
ATATATAAGT
Done.