Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_1066 ID=scaffold_1066-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 685

Length: 1143
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34


Found at i:802 original size:18 final size:17

Alignment explanation


    Indices: 752--793  Score: 68
    Period size: 16  Copynumber: 2.5  Consensus size: 17

        742 ATACAACCTC

                         *   
        752 TTTTTTTTATGCATGAA
          1 TTTTTTTTATGCACGAA

                             
        769 TTTTTTTT-TGCACGAA
          1 TTTTTTTTATGCACGAA

                     
        785 TTTTTTTTA
          1 TTTTTTTTA

        794 ATTCACGAAC


Statistics
Matches: 23,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  16   15  0.65
  17    8  0.35

ACGTcount: A:0.19, C:0.07, G:0.10, T:0.64


Consensus pattern (17 bp):   
TTTTTTTTATGCACGAA
Done.