Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397254.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_30.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15579451
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 73860 characters in sequence are not A, C, G, or T
File 14 of 32
Found at i:7659937 original size:28 final size:30
Alignment explanation
Indices: 7659899--7659973 Score: 102
Period size: 28 Copynumber: 2.6 Consensus size: 30
7659889 TTTAAAAAAT
7659899 TTTAAATAAATTTTTAT-TTTTTA-TCAAA
1 TTTAAATAAATTTTTATATTTTTATTCAAA
* *
7659927 TTTAATTAAA-TTTTATATTTTTATTTAAA
1 TTTAAATAAATTTTTATATTTTTATTCAAA
*
7659956 ATTAAATAAATTTTTATA
1 TTTAAATAAATTTTTATA
7659974 ATTAATAGTT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
27 6 0.15
28 15 0.38
29 12 0.30
30 7 0.17
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.57
Consensus pattern (30 bp):
TTTAAATAAATTTTTATATTTTTATTCAAA
Found at i:7660123 original size:18 final size:17
Alignment explanation
Indices: 7660078--7660123 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
7660068 AAATGATCAT
*
7660078 ATTATCATATTATATTA
1 ATTATAATATTATATTA
7660095 ATATATAATATTATTATTA
1 AT-TATAATATTA-TATTA
*
7660114 ATTATGATAT
1 ATTATAATAT
7660124 ATCAGTATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 2 0.08
18 16 0.64
19 7 0.28
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (17 bp):
ATTATAATATTATATTA
Found at i:7660213 original size:16 final size:16
Alignment explanation
Indices: 7660192--7660225 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
7660182 CATAAAATAA
7660192 TAAATTATATT-TTAAT
1 TAAATTA-ATTATTAAT
7660208 TAAATTAATTATTAAT
1 TAAATTAATTATTAAT
7660224 TA
1 TA
7660226 TAAAAATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 3 0.18
16 14 0.82
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TAAATTAATTATTAAT
Found at i:7660260 original size:29 final size:30
Alignment explanation
Indices: 7660224--7660340 Score: 139
Period size: 30 Copynumber: 3.9 Consensus size: 30
7660214 AATTATTAAT
7660224 TATAAAAATTTATTTAATTTTAAATAAAAA
1 TATAAAAATTTATTTAATTTTAAATAAAAA
* *
7660254 TATAAAAATTTATTTTATTTAAAATAAAAA
1 TATAAAAATTTATTTAATTTTAAATAAAAA
* ***
7660284 TATAAAAATATGA-TTAAGAGT-AATAAAAA
1 TATAAAAAT-TTATTTAATTTTAAATAAAAA
7660313 TATAAAAATTTATTTAAAATTTTAAATA
1 TATAAAAATTTATTT--AATTTTAAATA
7660341 CAATTTAAAA
Statistics
Matches: 70, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
28 2 0.03
29 19 0.27
30 40 0.57
31 5 0.07
32 4 0.06
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (30 bp):
TATAAAAATTTATTTAATTTTAAATAAAAA
Found at i:7661408 original size:28 final size:27
Alignment explanation
Indices: 7661340--7661409 Score: 72
Period size: 28 Copynumber: 2.6 Consensus size: 27
7661330 TTTAAAAATA
7661340 TTTAAATAAA-TTTTTATTTTTATTAAG
1 TTTAAATAAATTTTTTATTTTTATT-AG
* * *
7661367 TTTAATTAAGTTTTTTATTTTTATT-T
1 TTTAAATAAATTTTTTATTTTTATTAG
7661393 TTATCAAATAAATTTTT
1 TT-T-AAATAAATTTTT
7661410 ATAATTAATG
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
26 2 0.06
27 9 0.26
28 24 0.69
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.63
Consensus pattern (27 bp):
TTTAAATAAATTTTTTATTTTTATTAG
Found at i:7661682 original size:29 final size:30
Alignment explanation
Indices: 7661636--7661703 Score: 102
Period size: 29 Copynumber: 2.3 Consensus size: 30
7661626 AATCATTCGT
* *
7661636 TATAAAAACTTATTTGATTCAAAA-AAAAA
1 TATAAAAATTTATCTGATTCAAAATAAAAA
7661665 TATAAAAATTTATCTGATTCAAAATAAAAA
1 TATAAAAATTTATCTGATTCAAAATAAAAA
*
7661695 TACAAAAAT
1 TATAAAAAT
7661704 ATGATTGAAC
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
29 22 0.63
30 13 0.37
ACGTcount: A:0.59, C:0.07, G:0.03, T:0.31
Consensus pattern (30 bp):
TATAAAAATTTATCTGATTCAAAATAAAAA
Found at i:7667584 original size:99 final size:99
Alignment explanation
Indices: 7667426--7667614 Score: 288
Period size: 99 Copynumber: 1.9 Consensus size: 99
7667416 TACGTATATC
* *
7667426 AATTCTAATTCTCATGTGGTGCCAAATATATTTTCAATTTTTAAAACAGTTAATTGTTAAATTTT
1 AATTCTAATTCTCATGTGGTACCAAATATATTTTCAATTTTCAAAACAGTTAATTGTTAAATTTT
**
7667491 AATTTTAAATATATAGCACTAAAGTACATATGTT
66 AACATTAAATATATAGCACTAAAGTACATATGTT
* * * * *
7667525 AATTCTAATTTTCATGTGGTACCAAATTTATTTTCACTTTTCAAAATAGTTCATTGTTAAATTTT
1 AATTCTAATTCTCATGTGGTACCAAATATATTTTCAATTTTCAAAACAGTTAATTGTTAAATTTT
*
7667590 AACATTAAATATATAGTACTAAAGT
66 AACATTAAATATATAGCACTAAAGT
7667615 GATTCATTAT
Statistics
Matches: 80, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
99 80 1.00
ACGTcount: A:0.37, C:0.11, G:0.08, T:0.44
Consensus pattern (99 bp):
AATTCTAATTCTCATGTGGTACCAAATATATTTTCAATTTTCAAAACAGTTAATTGTTAAATTTT
AACATTAAATATATAGCACTAAAGTACATATGTT
Found at i:7667674 original size:119 final size:119
Alignment explanation
Indices: 7667509--7667980 Score: 547
Period size: 119 Copynumber: 3.9 Consensus size: 119
7667499 ATATATAGCA
* * * *
7667509 CTAAAGTACATATGTTAATTCTAATTTTCATGTGGTACCAAATTTATTTTCACTTTTCAAAATAG
1 CTAAAGTACATATATTAATTCTAATTTTCATGCGGTACCAAATTTATTTTCAATTTTCAAAATAA
* **
7667574 TTCATTGTTAAATTTTAACATTAAATATATAGTACTAAAGTGATTCATTATTAT
66 TTAATTGTTAAATTTTAATTTTAAATATATAGTACTAAAGTGATTCATTATTAT
* * * * *
7667628 CTAAAGTA-AGTATATTAATTCTAATTTTCAAGCCGTGCCAATTTTATTTTCATTTTTCAAAATA
1 CTAAAGTACA-TATATTAATTCTAATTTTCATGCGGTACCAAATTTATTTTCAATTTTCAAAATA
*
7667692 ATTAATTGTTAAATTTTAATTTTAAATATATAGTACTAAAGTGATTCATAATTAT
65 ATTAATTGTTAAATTTTAATTTTAAATATATAGTACTAAAGTGATTCATTATTAT
* * ** * *
7667747 TTAAAGTACGTATA-TAATTCTAATTTTCATGTAGCACCAAATATTTTTTTTCTCAATTTTCAAA
1 CTAAAGTACATATATTAATTCTAATTTTCATGCGGTACC-AA-A-TTTATTT-TCAATTTTCAAA
** ** * * * * *
7667811 ATTGTTAAACGTAAAATTTTAATTTTAAAGATATAATACTAAAGTGATTTATTA-CAT
62 ATAATTAATTGTTAAATTTTAATTTTAAATATATAGTACTAAAGTGATTCATTATTAT
* * * * *
7667868 CTAAAATACATATATTAATTATAATTTTCATGCGGTACAAAATTTATTTTTAATTTTTAAAATAA
1 CTAAAGTACATATATTAATTCTAATTTTCATGCGGTACCAAATTTATTTTCAATTTTCAAAATAA
* *
7667933 TTAATTGTTAAATTTTAATTTTAAATATATA-TAACTAAAATTATTCAT
66 TTAATTGTTAAATTTTAATTTTAAATATATAGT-ACTAAAGTGATTCAT
7667981 GTTGGTCTCA
Statistics
Matches: 293, Mismatches: 52, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
117 1 0.00
118 71 0.24
119 124 0.42
120 1 0.00
121 21 0.07
122 75 0.26
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.45
Consensus pattern (119 bp):
CTAAAGTACATATATTAATTCTAATTTTCATGCGGTACCAAATTTATTTTCAATTTTCAAAATAA
TTAATTGTTAAATTTTAATTTTAAATATATAGTACTAAAGTGATTCATTATTAT
Found at i:7667916 original size:240 final size:238
Alignment explanation
Indices: 7667510--7667980 Score: 601
Period size: 240 Copynumber: 2.0 Consensus size: 238
7667500 TATATAGCAC
* * * *
7667510 TAAAGTACATATGTTAATTCTAATTTTCATGTGGTACCAAATTTATTTTCACTTTTCAAAATAGT
1 TAAAGTACATATGATAATTCTAATTTTCATGTAGCACCAAATTTATTTTCAATTTTCAAAATAGT
* ** * * * * *
7667575 TCATTGTTAAATTTTAACATTAAATATATAGTACTAAAGTGATTCATTATTATCTAAAGTAAGTA
66 TAAACGTAAAATTTTAACATTAAAGATATAATACTAAAGTGATTCATTATCATCTAAAATAAGTA
* * * * *
7667640 TATTAATTCTAATTTTCAAGCCGTGCCAATTTTA-TTTTCATTTTTCAAAATAATTAATTGTTAA
131 TATTAATTATAATTTTCAAGCCGTACAAAATTTATTTTTAATTTTT-AAAATAATTAATTGTTAA
*
7667704 ATTTTAATTTTAAATATATAGT-ACTAAAGTGATTCATAATTATT
195 ATTTTAATTTTAAATATATA-TAACTAAAATGATTCATAATTATT
* *
7667748 TAAAGTACGTAT-ATAATTCTAATTTTCATGTAGCACCAAATATTTTTTTTCTCAATTTTCAAAA
1 TAAAGTACATATGATAATTCTAATTTTCATGTAGCACC-AA-A-TTTATTT-TCAATTTTCAAAA
* ** *
7667812 TTGTTAAACGTAAAATTTTAATTTTAAAGATATAATACTAAAGTGATTTATTA-CATCTAAAATA
62 TAGTTAAACGTAAAATTTTAACATTAAAGATATAATACTAAAGTGATTCATTATCATCTAAAATA
* *
7667876 CA-TATATTAATTATAATTTTCATGCGGTACAAAATTTATTTTTAATTTTTAAAATAATTAATTG
127 -AGTATATTAATTATAATTTTCAAGCCGTACAAAATTTATTTTTAATTTTTAAAATAATTAATTG
*
7667940 TTAAATTTTAATTTTAAATATATATAACTAAAATTATTCAT
191 TTAAATTTTAATTTTAAATATATATAACTAAAATGATTCAT
7667981 GTTGGTCTCA
Statistics
Matches: 199, Mismatches: 27, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
237 22 0.11
238 13 0.07
239 2 0.01
240 96 0.48
241 66 0.33
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.45
Consensus pattern (238 bp):
TAAAGTACATATGATAATTCTAATTTTCATGTAGCACCAAATTTATTTTCAATTTTCAAAATAGT
TAAACGTAAAATTTTAACATTAAAGATATAATACTAAAGTGATTCATTATCATCTAAAATAAGTA
TATTAATTATAATTTTCAAGCCGTACAAAATTTATTTTTAATTTTTAAAATAATTAATTGTTAAA
TTTTAATTTTAAATATATATAACTAAAATGATTCATAATTATT
Found at i:7669480 original size:121 final size:120
Alignment explanation
Indices: 7669347--7669812 Score: 540
Period size: 121 Copynumber: 3.9 Consensus size: 120
7669337 AGAGTCAACA
* * *
7669347 ATTCATTATTATCTAAAGTATGTACATTAATTCTAATTTTCATGTGGTATCAAATTTTTTATTTC
1 ATTCATTATTATCTAAAGTACGTATATTAATTCTAATTTTCATGTGGTA-CAAATTTCTTATTTC
*
7669412 AATTTTCAAAATAGTTAATAGTTAAATTTTAATTTTAAATATATAGTATTAAAGTG
65 AATTTTCAAAATAGTTAATAGTTAAATTTTAATTTTAAATATATAGTACTAAAGTG
* * * ** * * *
7669468 ATTCATTATTATCTAAAGTACATGTATTCATTCTAATTTTCATGTAATACCAATTTTTTTTTTTC
1 ATTCATTATTATCTAAAGTACGTATATTAATTCTAATTTTCATGTGGTA-CAAATTTCTTATTTC
* * *
7669533 AATCTT-AAAAGTAGTTAATAGTAAAATTTTAATTTTAAAGATATAGTACTAAAGTG
65 AATTTTCAAAA-TAGTTAATAGTTAAATTTTAATTTTAAATATATAGTACTAAAGTG
* * * *
7669589 ATTCATTATTATCTAAAGTGCGCATATTAATTATAAGTTTCATGTGGTACAAAATTTACTTATTT
1 ATTCATTATTATCTAAAGTACGTATATTAATTCTAATTTTCATGTGGTAC-AAATTT-CTTA-TT
* * * * * ** *
7669654 TCAATTTGCAAAAGAATTAATTGTTAAATTTCAATTTTTCATATATACTACTAAAGTG
63 TCAATTTTCAAAATAGTTAATAGTTAAATTTTAATTTTAAATATATAGTACTAAAGTG
* * * * *
7669712 ATTCATTATTATCTAAAGTACATATATTAATTCTATTTTTCAAGTGGTACCAATTTCAT-TTTCA
1 ATTCATTATTATCTAAAGTACGTATATTAATTCTAATTTTCATGTGGTACAAATTTCTTATTTCA
* * * *
7669776 ATTTACAAAATAGTCAATTGTTAAAATTTAATTTTAA
66 ATTTTCAAAATAGTTAATAGTTAAATTTTAATTTTAA
7669813 TAAAATTTTT
Statistics
Matches: 286, Mismatches: 54, Indels: 12
0.81 0.15 0.03
Matches are distributed among these distances:
119 34 0.12
120 5 0.02
121 149 0.52
122 7 0.02
123 87 0.30
124 4 0.01
ACGTcount: A:0.37, C:0.09, G:0.08, T:0.45
Consensus pattern (120 bp):
ATTCATTATTATCTAAAGTACGTATATTAATTCTAATTTTCATGTGGTACAAATTTCTTATTTCA
ATTTTCAAAATAGTTAATAGTTAAATTTTAATTTTAAATATATAGTACTAAAGTG
Found at i:7670078 original size:47 final size:47
Alignment explanation
Indices: 7670007--7670098 Score: 148
Period size: 47 Copynumber: 2.0 Consensus size: 47
7669997 TTGATGCGTG
*
7670007 AAAGATGACTTAAATTATCATTGAATTTATATTAAGAAAGAACTCTA
1 AAAGATGACTTAAATTACCATTGAATTTATATTAAGAAAGAACTCTA
* * *
7670054 AAAGATGACTTAAATTGCCTTTGAATTTATATTAAGTAAGAACTC
1 AAAGATGACTTAAATTACCATTGAATTTATATTAAGAAAGAACTC
7670099 CACGAACGTG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.43, C:0.10, G:0.12, T:0.35
Consensus pattern (47 bp):
AAAGATGACTTAAATTACCATTGAATTTATATTAAGAAAGAACTCTA
Found at i:7677195 original size:21 final size:21
Alignment explanation
Indices: 7677171--7677212 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
7677161 CATACAACAT
7677171 GAGATAAGGATAAAAAGAAGA
1 GAGATAAGGATAAAAAGAAGA
*
7677192 GAGATAAGGATACAAAGAAGA
1 GAGATAAGGATAAAAAGAAGA
7677213 CCCAATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.60, C:0.02, G:0.29, T:0.10
Consensus pattern (21 bp):
GAGATAAGGATAAAAAGAAGA
Found at i:7687784 original size:28 final size:28
Alignment explanation
Indices: 7687744--7687813 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 28
7687734 TAAATAACAA
* * * *
7687744 AAACATATTATAAGCAAATAAATTATATT
1 AAACATA-AATAAACAAATAAATTACATC
*
7687773 AAACATAAATAAACAAATACATTACATC
1 AAACATAAATAAACAAATAAATTACATC
*
7687801 AAATATAAATAAA
1 AAACATAAATAAA
7687814 ATTTTAAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
28 28 0.80
29 7 0.20
ACGTcount: A:0.61, C:0.10, G:0.01, T:0.27
Consensus pattern (28 bp):
AAACATAAATAAACAAATAAATTACATC
Found at i:7691132 original size:20 final size:20
Alignment explanation
Indices: 7691109--7691148 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
7691099 AATTAATTTT
* *
7691109 AAATTAATTTACTAATAATA
1 AAATTAATATACTAACAATA
*
7691129 AAATTTATATACTAACAATA
1 AAATTAATATACTAACAATA
7691149 CATTAAATAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (20 bp):
AAATTAATATACTAACAATA
Found at i:7705809 original size:9 final size:9
Alignment explanation
Indices: 7705772--7705845 Score: 58
Period size: 9 Copynumber: 8.2 Consensus size: 9
7705762 TCAAATCCTC
*
7705772 ACAGCCACA
1 ACAGCAACA
* *
7705781 GCAGCAGCA
1 ACAGCAACA
* *
7705790 GCAGCAGCA
1 ACAGCAACA
7705799 ACAGCAACA
1 ACAGCAACA
* *
7705808 ACAACAACC
1 ACAGCAACA
7705817 ACAGCAACA
1 ACAGCAACA
*
7705826 ACAGCAGCA
1 ACAGCAACA
* *
7705835 GCAGCCACA
1 ACAGCAACA
7705844 AC
1 AC
7705846 CACTCTTTCC
Statistics
Matches: 51, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
9 51 1.00
ACGTcount: A:0.45, C:0.38, G:0.18, T:0.00
Consensus pattern (9 bp):
ACAGCAACA
Found at i:7708075 original size:2 final size:2
Alignment explanation
Indices: 7708068--7708096 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7708058 ACTTGTTGCG
7708068 CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
7708097 TAATATGGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.52, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:7715563 original size:2 final size:2
Alignment explanation
Indices: 7715556--7715585 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7715546 CTCTTCTTGC
7715556 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7715586 GTTAATTGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7719906 original size:37 final size:37
Alignment explanation
Indices: 7719856--7719927 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
7719846 GTCTCTGGCT
*
7719856 TCTATCAGATTGGCTTAAGATGCGAGCGCAGAGACCA
1 TCTATCAGATTGGCTTAAGATGCGAACGCAGAGACCA
* * *
7719893 TCTATCAGTTTGGCTTAAGGTGCGAATGCAGAGAC
1 TCTATCAGATTGGCTTAAGATGCGAACGCAGAGAC
7719928 TATCAGACTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (37 bp):
TCTATCAGATTGGCTTAAGATGCGAACGCAGAGACCA
Found at i:7727615 original size:18 final size:19
Alignment explanation
Indices: 7727582--7727621 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
7727572 CTTTTGACCC
* *
7727582 TTCTCTTTCGTCTCTTTGT
1 TTCTCTCTCGTCTCTTTAT
7727601 TTCTCTCTC-TCTCTTTAT
1 TTCTCTCTCGTCTCTTTAT
7727619 TTC
1 TTC
7727622 AGTCTTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.03, C:0.30, G:0.05, T:0.62
Consensus pattern (19 bp):
TTCTCTCTCGTCTCTTTAT
Found at i:7745953 original size:5 final size:5
Alignment explanation
Indices: 7745943--7745972 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
7745933 TGTGCTTGGA
7745943 GAAGG GAAGG GAAGG GAAGG GAAGG GAAGG
1 GAAGG GAAGG GAAGG GAAGG GAAGG GAAGG
7745973 AAGAGCCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.60, T:0.00
Consensus pattern (5 bp):
GAAGG
Found at i:7746040 original size:2 final size:2
Alignment explanation
Indices: 7746033--7746061 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7746023 ACAAAAACGG
7746033 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7746062 GGGCCTTAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7753312 original size:2 final size:2
Alignment explanation
Indices: 7753305--7753330 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7753295 TATTAAAAAG
7753305 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
7753331 ATATTGCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:7772868 original size:17 final size:17
Alignment explanation
Indices: 7772835--7772869 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
7772825 AAACTTTCCA
* *
7772835 TAGAATATATATGTTCG
1 TAGAATATAAATATTCG
7772852 TAGAATATAAATATTCG
1 TAGAATATAAATATTCG
7772869 T
1 T
7772870 GGTTATCTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.40, C:0.06, G:0.14, T:0.40
Consensus pattern (17 bp):
TAGAATATAAATATTCG
Found at i:7776800 original size:26 final size:25
Alignment explanation
Indices: 7776745--7776801 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
7776735 ATACAATAAC
* *
7776745 TAAATTGAACAAAATTAAAATGAGAT
1 TAAATTGAAAAAAATTAAAA-GAAAT
7776771 TAAATTGAAAAAAAATTAAAA-AAAT
1 TAAATTG-AAAAAAATTAAAAGAAAT
7776796 ATAAAT
1 -TAAAT
7776802 CTTCAAGTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 3 0.11
26 12 0.44
27 12 0.44
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26
Consensus pattern (25 bp):
TAAATTGAAAAAAATTAAAAGAAAT
Found at i:7777577 original size:210 final size:207
Alignment explanation
Indices: 7777272--7777895 Score: 809
Period size: 210 Copynumber: 3.0 Consensus size: 207
7777262 CATCTATAAA
* *
7777272 TATATATATGAAATTAATTATATAATTTATATGTTATAATATTTTATATCAAAATTTATATAATA
1 TATATATAT--AATTAATGATATAA-TTATATGTTATAATATTTTATATCAAAATTAATA-AATA
* * * * * *
7777337 AAAACTAATTATAAACAATATGTTATAAAATCTAAGGTGATAGCTAATACACTTATTAAATGTAA
62 ATAACTAATTATAAACAATATGTTATAAAATCTAATGTGATAACTAATAAAGTTATAAAATGTAA
* * * *
7777402 TCATATAAATAAAATTTATTATAAGTTATAGTGATGGTTATGTATAAATTAAATATATGTATATA
127 TCATATAAATAAAGTTTATTATAAATTATAGTAATGCTTATGTATAAATTAAATATATGTATATA
*
7777467 TAACATATTACTTTAT
192 TAATATATTACTTTAT
* * * *
7777483 TATATATATAATGAATGATATATATTATATGTTAAAATGTTTTATATCAAAGTTCGAATAAATAA
1 TATATATATAATTAATGATATA-ATTATATGTTATAATATTTTATATCAAAATT--AATAAATAA
*
7777548 TAACTAATTATAAACAATATGTTATAAAATCTAATGTGAAAACTAATAAAGTTATAAAATGTAAT
63 TAACTAATTATAAACAATATGTTATAAAATCTAATGTGATAACTAATAAAGTTATAAAATGTAAT
* * * *
7777613 CATATAAATAAAGTCTATTATAACTTATAGTAATACTTATGTATAAATTAAACATATGTATATAT
128 CATATAAATAAAGTTTATTATAAATTATAGTAATGCTTATGTATAAATTAAATATATGTATATAT
*
7777678 AATATATGACTTTAT
193 AATATATTACTTTAT
* * * *
7777693 TATATATAAAATTAATGACATGACTTATATATTATAATATTTTATATCAAAATTTATATAAATAA
1 TATATATATAATTAATGATAT-AATTATATGTTATAATATTTTATATCAAAA-TTA-ATAAATAA
* * * * *
7777758 TAACTAATTATAAA-ATATATATTATAAAATCGAATGTGATAACTAATAAAGTTATCAAGTATAA
63 TAACTAATTATAAACA-ATATGTTATAAAATCTAATGTGATAACTAATAAAGTTATAAAATGTAA
* * * * *
7777822 TCATGTAAATAAAGTTTATTATAAATTATAGCAATGTTTATGTAAAAACTAAATATATGTATATA
127 TCATATAAATAAAGTTTATTATAAATTATAGTAATGCTTATGTATAAATTAAATATATGTATATA
7777887 TAATATATT
192 TAATATATT
7777896 TATACAATTA
Statistics
Matches: 360, Mismatches: 46, Indels: 15
0.86 0.11 0.04
Matches are distributed among these distances:
209 40 0.11
210 305 0.85
211 15 0.04
ACGTcount: A:0.47, C:0.05, G:0.07, T:0.40
Consensus pattern (207 bp):
TATATATATAATTAATGATATAATTATATGTTATAATATTTTATATCAAAATTAATAAATAATAA
CTAATTATAAACAATATGTTATAAAATCTAATGTGATAACTAATAAAGTTATAAAATGTAATCAT
ATAAATAAAGTTTATTATAAATTATAGTAATGCTTATGTATAAATTAAATATATGTATATATAAT
ATATTACTTTAT
Found at i:7780729 original size:35 final size:34
Alignment explanation
Indices: 7780690--7780794 Score: 115
Period size: 33 Copynumber: 3.1 Consensus size: 34
7780680 AATAAATGAA
* *
7780690 AAAAATATATAATATGGAAAATTATATTAAAAAAT
1 AAAAATATATAATAT-TAAAATTATATTAAGAAAT
* *
7780725 AAAAATA-A-AATATATAAAATTATAATACGAAAT
1 AAAAATATATAATAT-TAAAATTATATTAAGAAAT
* *
7780758 AAAAAAATATAATATTAAAAATATATTTAAGAAAT
1 AAAAATATATAATATTAAAATTATA-TTAAGAAAT
7780793 AA
1 AA
7780795 TATTGTAAAA
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
33 26 0.45
34 11 0.19
35 21 0.36
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.30
Consensus pattern (34 bp):
AAAAATATATAATATTAAAATTATATTAAGAAAT
Found at i:7780744 original size:33 final size:32
Alignment explanation
Indices: 7780707--7780794 Score: 88
Period size: 35 Copynumber: 2.6 Consensus size: 32
7780697 TATAATATGG
7780707 AAAATTATATTAAAAAATAAAAATAAAATATAT
1 AAAATTATATTAAAAAATAAAAATAAAATAT-T
* *
7780740 AAAATTATAATACGAAATAA-AAAAATATAATATT
1 AAAATTATATTA--AAA-AATAAAAATAAAATATT
* *
7780774 AAAAATATATTTAAGAAATAA
1 AAAATTATA-TTAAAAAATAA
7780795 TATTGTAAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
32 2 0.04
33 15 0.33
34 9 0.20
35 17 0.38
36 2 0.04
ACGTcount: A:0.67, C:0.01, G:0.02, T:0.30
Consensus pattern (32 bp):
AAAATTATATTAAAAAATAAAAATAAAATATT
Found at i:7780779 original size:14 final size:14
Alignment explanation
Indices: 7780760--7780823 Score: 55
Period size: 14 Copynumber: 4.7 Consensus size: 14
7780750 TACGAAATAA
7780760 AAAAATATAATATT
1 AAAAATATAATATT
7780774 AAAAATAT-AT-TT
1 AAAAATATAATATT
*
7780786 AAGAA-ATAATATTGT
1 AAAAATATAATA-T-T
*
7780801 AAAAAT-TAATAAT
1 AAAAATATAATATT
*
7780814 AAAAAAATAA
1 AAAAATATAA
7780824 ATATATTAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
11 2 0.05
12 8 0.20
13 8 0.20
14 12 0.30
15 10 0.25
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (14 bp):
AAAAATATAATATT
Found at i:7781374 original size:13 final size:13
Alignment explanation
Indices: 7781356--7781415 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
7781346 ATTAAAAAAA
7781356 TTTAAA-TAATTAT
1 TTTAAATTAATT-T
7781369 TTTAAATTAATTT
1 TTTAAATTAATTT
** *
7781382 TTTATTTTTATTAT
1 TTTAAATTAATT-T
*
7781396 ATTTAATTTAATTT
1 -TTTAAATTAATTT
7781410 TTTAAA
1 TTTAAA
7781416 ATAAATAATT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
13 21 0.55
14 7 0.18
15 10 0.26
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
TTTAAATTAATTT
Found at i:7781562 original size:22 final size:21
Alignment explanation
Indices: 7781523--7781577 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
7781513 TCCTAAAATT
*
7781523 TAAATTTTTT-TATATATTATA
1 TAAATTTTTTAAATATATTA-A
*
7781544 TAAATTTTTTAAATTTATTAA
1 TAAATTTTTTAAATATATTAA
7781565 TAAATTTTCTTAA
1 TAAATTTT-TTAA
7781578 TAGCCTCTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
21 19 0.63
22 11 0.37
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (21 bp):
TAAATTTTTTAAATATATTAA
Found at i:7781696 original size:14 final size:14
Alignment explanation
Indices: 7781677--7781733 Score: 62
Period size: 14 Copynumber: 4.0 Consensus size: 14
7781667 GTTATTTTTG
*
7781677 TTTTTTTAAATTTA
1 TTTTTTTATATTTA
7781691 TTTTTTTATTATTTA
1 TTTTTTTA-TATTTA
*
7781706 TATTTATT-TATTTA
1 T-TTTTTTATATTTA
*
7781720 TTTATTTATATTTA
1 TTTTTTTATATTTA
7781734 CTCATATATT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
13 4 0.11
14 21 0.58
15 6 0.17
16 5 0.14
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTTTTTATATTTA
Found at i:7781705 original size:21 final size:21
Alignment explanation
Indices: 7781659--7781733 Score: 73
Period size: 21 Copynumber: 3.5 Consensus size: 21
7781649 GTGTGACTCA
*
7781659 ATTTTAATGTTATTTTTGTT-TT
1 ATTTAAAT-TTATTTTT-TTATT
7781681 -TTTAAATTTATTTTTTTATT
1 ATTTAAATTTATTTTTTTATT
* *
7781701 ATTTATATTTATTTATTTATTT
1 ATTTAAATTTATTTTTTTA-TT
*
7781723 ATTTATATTTA
1 ATTTAAATTTA
7781734 CTCATATATT
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
19 2 0.04
20 10 0.21
21 22 0.47
22 13 0.28
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (21 bp):
ATTTAAATTTATTTTTTTATT
Found at i:7781706 original size:4 final size:4
Alignment explanation
Indices: 7781686--7781728 Score: 56
Period size: 4 Copynumber: 11.5 Consensus size: 4
7781676 GTTTTTTTAA
*
7781686 ATTT ATTT TTTT A-TT ATTT A--T ATTT ATTT ATTT ATTT ATTT AT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT AT
7781729 ATTTACTCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
2 2 0.06
3 3 0.09
4 29 0.85
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
ATTT
Found at i:7781727 original size:22 final size:21
Alignment explanation
Indices: 7781681--7781733 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
7781671 TTTTTGTTTT
* *
7781681 TTTAAATTTATTTTTTTATTA
1 TTTATATTTATTTATTTATTA
7781702 TTTATATTTATTTATTTATTTA
1 TTTATATTTATTTATTTA-TTA
7781724 TTTATATTTA
1 TTTATATTTA
7781734 CTCATATATT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 16 0.55
22 13 0.45
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTATATTTATTTATTTATTA
Found at i:7781743 original size:22 final size:22
Alignment explanation
Indices: 7781699--7781744 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
7781689 TATTTTTTTA
* * *
7781699 TTATTTATATTTATTTATTTAT
1 TTATTTATATTTACTCATATAT
7781721 TTATTTATATTTACTCATATAT
1 TTATTTATATTTACTCATATAT
7781743 TT
1 TT
7781745 TAAATTTCTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.67
Consensus pattern (22 bp):
TTATTTATATTTACTCATATAT
Found at i:7782310 original size:17 final size:19
Alignment explanation
Indices: 7782280--7782316 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
7782270 CTAAACTCAT
7782280 TAAGTTTTAATATAA-ATA
1 TAAGTTTTAATATAACATA
*
7782298 TAAG-TTTATTATAACATA
1 TAAGTTTTAATATAACATA
7782316 T
1 T
7782317 TATATTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (19 bp):
TAAGTTTTAATATAACATA
Found at i:7782551 original size:2 final size:2
Alignment explanation
Indices: 7782544--7782573 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7782534 TCTATTCAAG
7782544 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7782574 ACACCATCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7785089 original size:30 final size:30
Alignment explanation
Indices: 7785033--7785089 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
7785023 TACTGTAAGT
* * *
7785033 AACAAAAATATTACTGTTCCACAACTCTAG
1 AACAAAAACATTACTCTTCAACAACTCTAG
*
7785063 AACAAAAACATTACTCTTCAATAACTC
1 AACAAAAACATTACTCTTCAACAACTC
7785090 AGGTTTTATG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.46, C:0.25, G:0.04, T:0.26
Consensus pattern (30 bp):
AACAAAAACATTACTCTTCAACAACTCTAG
Found at i:7810552 original size:15 final size:15
Alignment explanation
Indices: 7810532--7810563 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7810522 GAAAAGCCCC
7810532 AAATAAATACTCACT
1 AAATAAATACTCACT
*
7810547 AAATAAATATTCACT
1 AAATAAATACTCACT
7810562 AA
1 AA
7810564 TTACACCAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (15 bp):
AAATAAATACTCACT
Found at i:7811097 original size:3 final size:3
Alignment explanation
Indices: 7811091--7811116 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7811081 TCACGAAAAC
7811091 ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
7811117 GAGAAAAACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:7812728 original size:13 final size:13
Alignment explanation
Indices: 7812710--7812735 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7812700 ATGTGATAGA
7812710 TAAAAAAAATTTT
1 TAAAAAAAATTTT
7812723 TAAAAAAAATTTT
1 TAAAAAAAATTTT
7812736 ACCACATCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
TAAAAAAAATTTT
Found at i:7822917 original size:196 final size:197
Alignment explanation
Indices: 7822699--7823079 Score: 509
Period size: 196 Copynumber: 1.9 Consensus size: 197
7822689 ATAATTTATG
* * * * *
7822699 TAAATTCTCCAACGACAAAATCTCAAGAAAATCAAAAGTGGCTT-TTTAGGAATTTTTAGGTGAG
1 TAAATTCTCCAACGACAAAATCTCAAGAAAACCAAAAGTGACTTCTTGA-GAATTTCTAAGTGAG
* * *
7822763 ATAATGTTTC-AAAATTTTACCATAAGCATTTGGGAGATTTTGGGAAATGTTCAATATCAAGAAT
65 AGAAT-TTTCAAAAATTTTACCATAAGCATTTGGGAGATTTTGAGAAATGTTCAATATCAAGAAC
* * *
7822827 TTTTATTTATTTCGAAAAACTAATAAAATA-AAATTGAGAAAA-GAAATAAAATTAAAGAATTAA
129 TATTATTTATTTCAAAAAACTAATAAAATAGAAA-TAAGAAAAGGAAATAAAATTAAAGAATTAA
7822890 ATAAA
193 ATAAA
* * * *
7822895 TAAATTCTCCAATGATAAAATCTTAAGAAAACCAAAAGTGACTTCTTGAGACTTTCTAAGTGAGA
1 TAAATTCTCCAACGACAAAATCTCAAGAAAACCAAAAGTGACTTCTTGAGAATTTCTAAGTGAGA
* * * *
7822960 GAATTTTCAAAAATTTTACTATGAGCGTTTGGGAGATTTTGAGAAATTTTCAATATCAAGAACTA
66 GAATTTTCAAAAATTTTACCATAAGCATTTGGGAGATTTTGAGAAATGTTCAATATCAAGAACTA
* * *
7823025 TTATTTATTTTAAAAAACTAATAAATTAGAAATAAGAAAAGGAAATAGAATTAAA
131 TTATTTATTTCAAAAAACTAATAAAATAGAAATAAGAAAAGGAAATAAAATTAAA
7823080 ATATTGAATT
Statistics
Matches: 159, Mismatches: 22, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
195 4 0.03
196 136 0.86
197 19 0.12
ACGTcount: A:0.45, C:0.09, G:0.14, T:0.32
Consensus pattern (197 bp):
TAAATTCTCCAACGACAAAATCTCAAGAAAACCAAAAGTGACTTCTTGAGAATTTCTAAGTGAGA
GAATTTTCAAAAATTTTACCATAAGCATTTGGGAGATTTTGAGAAATGTTCAATATCAAGAACTA
TTATTTATTTCAAAAAACTAATAAAATAGAAATAAGAAAAGGAAATAAAATTAAAGAATTAAATA
AA
Found at i:7834784 original size:12 final size:12
Alignment explanation
Indices: 7834760--7834807 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
7834750 ATTATGATCT
*
7834760 AATTTTGTGATA
1 AATTTAGTGATA
*
7834772 AATTTAGTTATA
1 AATTTAGTGATA
*
7834784 AACTTTTGTGATA
1 AA-TTTAGTGATA
*
7834797 AATTTTGTGAT
1 AATTTAGTGAT
7834808 CCTAAAACCT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
12 21 0.68
13 10 0.32
ACGTcount: A:0.33, C:0.02, G:0.15, T:0.50
Consensus pattern (12 bp):
AATTTAGTGATA
Found at i:7835716 original size:20 final size:20
Alignment explanation
Indices: 7835668--7835717 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
7835658 TACTAAGAGG
*
7835668 ATAATATTTTAAAATTTTTTA
1 ATAAT-TTTTAAAATTTTTAA
** *
7835689 ATTTTTTTTGAAATTTTTAA
1 ATAATTTTTAAAATTTTTAA
7835709 ATAATTTTT
1 ATAATTTTT
7835718 TATTATTTCA
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
20 20 0.87
21 3 0.13
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (20 bp):
ATAATTTTTAAAATTTTTAA
Found at i:7836038 original size:20 final size:20
Alignment explanation
Indices: 7836015--7836059 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
7836005 TTATTCGATT
7836015 TAAAATAAAAAT-ATTAAAAA
1 TAAAATAAAAATAATT-AAAA
* *
7836035 TAAATTAAATATAATTAAAA
1 TAAAATAAAAATAATTAAAA
7836055 TAAAA
1 TAAAA
7836060 AATTATTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
20 18 0.86
21 3 0.14
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (20 bp):
TAAAATAAAAATAATTAAAA
Found at i:7836085 original size:22 final size:20
Alignment explanation
Indices: 7836055--7836101 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
7836045 ATAATTAAAA
* *
7836055 TAAAAAATTATTTAAATTTTT
1 TAAAAAATTA-ATAAAATTTT
7836076 TAAAATAATTAATAAAATTTT
1 TAAAA-AATTAATAAAATTTT
7836097 TAAAA
1 TAAAA
7836102 CAAGAATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
TAAAAAATTAATAAAATTTT
Found at i:7836113 original size:21 final size:21
Alignment explanation
Indices: 7836067--7836112 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
7836057 AAAAATTATT
* * *
7836067 TAAATTTTTTAAAATAATTAA
1 TAAAATTTTTAAAACAATGAA
7836088 TAAAATTTTTAAAACAA-GAA
1 TAAAATTTTTAAAACAATGAA
7836108 TAAAA
1 TAAAA
7836113 AGGGAAATGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (21 bp):
TAAAATTTTTAAAACAATGAA
Found at i:7850993 original size:6 final size:6
Alignment explanation
Indices: 7850982--7851056 Score: 53
Period size: 6 Copynumber: 12.0 Consensus size: 6
7850972 TTTAAGACAA
* * * *
7850982 TTTTAT TTTTAT TTATTAT TATAAT ATTTTAT ATTTTAT TTTTA- ATATAT
1 TTTTAT TTTTAT TT-TTAT TTTTAT -TTTTAT -TTTTAT TTTTAT TTTTAT
* *
7851032 TTATAT TTTTAT TATTAAT TTTTAT
1 TTTTAT TTTTAT T-TTTAT TTTTAT
7851057 ATAATATCAT
Statistics
Matches: 55, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
5 3 0.05
6 31 0.56
7 21 0.38
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTAT
Found at i:7851219 original size:6 final size:6
Alignment explanation
Indices: 7851208--7851282 Score: 53
Period size: 6 Copynumber: 12.0 Consensus size: 6
7851198 ATGTCATATA
* * * *
7851208 TTTTAT TTTTAT TTATTAT TATAAT ATTTTAT ATTTTAT TTTTA- ATATAT
1 TTTTAT TTTTAT TT-TTAT TTTTAT -TTTTAT -TTTTAT TTTTAT TTTTAT
* *
7851258 TTATAT TTTTAT TATTAAT TTTTAT
1 TTTTAT TTTTAT T-TTTAT TTTTAT
7851283 ATAATATCAT
Statistics
Matches: 55, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
5 3 0.05
6 31 0.56
7 21 0.38
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTAT
Found at i:7851285 original size:23 final size:22
Alignment explanation
Indices: 7851213--7851285 Score: 71
Period size: 23 Copynumber: 3.4 Consensus size: 22
7851203 ATATATTTTA
*
7851213 TTTTTAT-TTATTATTA-TAAT
1 TTTTTATATTTTTATTATTAAT
* *
7851233 ATTTTATA-TTTTATTTTTAAT
1 TTTTTATATTTTTATTATTAAT
*
7851254 ATATTTATATTTTTATTATTAAT
1 -TTTTTATATTTTTATTATTAAT
7851277 TTTTATATA
1 TTTT-TATA
7851286 ATATCATATT
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
20 12 0.29
21 4 0.10
22 9 0.22
23 16 0.39
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (22 bp):
TTTTTATATTTTTATTATTAAT
Found at i:7851359 original size:113 final size:113
Alignment explanation
Indices: 7850981--7851344 Score: 685
Period size: 113 Copynumber: 3.2 Consensus size: 113
7850971 TTTTAAGACA
7850981 ATTTTATTTTTATTTATTATTATAATATTTTATATTTTATTTTTAATATATTTATATTTTTATTA
1 ATTTTATTTTTATTTATTATTATAATATTTTATATTTTATTTTTAATATATTTATATTTTTATTA
*
7851046 TTAATTTTTATATAATATCATTTCTTAAATATATTTTTAATATCATAT
66 TTAATTTTTATATAATATCATTTCTTAAATATATTTTTAATGTCATAT
*
7851094 ATTTTATTTTTATTTATTATTATAATATTTTATATTTTATTTTTAATATATTTATATTTATATTA
1 ATTTTATTTTTATTTATTATTATAATATTTTATATTTTATTTTTAATATATTTATATTTTTATTA
7851159 TTAATTTTTATATAATATCATTTCTTAAATATATTTTTAATGTCATAT
66 TTAATTTTTATATAATATCATTTCTTAAATATATTTTTAATGTCATAT
7851207 ATTTTATTTTTATTTATTATTATAATATTTTATATTTTATTTTTAATATATTTATATTTTTATTA
1 ATTTTATTTTTATTTATTATTATAATATTTTATATTTTATTTTTAATATATTTATATTTTTATTA
*
7851272 TTAATTTTTATATAATATCATATT-TTAAATATATTTTTACTGTCATAT
66 TTAATTTTTATATAATATCAT-TTCTTAAATATATTTTTAATGTCATAT
7851320 ATTTTATTTTTATTTATTATTATAA
1 ATTTTATTTTTATTTATTATTATAA
7851345 AAATATATTT
Statistics
Matches: 246, Mismatches: 4, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
113 244 0.99
114 2 0.01
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (113 bp):
ATTTTATTTTTATTTATTATTATAATATTTTATATTTTATTTTTAATATATTTATATTTTTATTA
TTAATTTTTATATAATATCATTTCTTAAATATATTTTTAATGTCATAT
Found at i:7858446 original size:29 final size:30
Alignment explanation
Indices: 7858412--7858476 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
7858402 AGTTCCCCAC
*
7858412 ACATTTCCCTCCAAAA-TTTTCCCTCCAAA
1 ACATTTCCCTCCAAAAGATTTCCCTCCAAA
* *
7858441 GCATTTCCCTCCAAAAGATTTCCCTTCAAA
1 ACATTTCCCTCCAAAAGATTTCCCTCCAAA
7858471 ACATTT
1 ACATTT
7858477 GGGAGGGAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 15 0.48
30 16 0.52
ACGTcount: A:0.31, C:0.34, G:0.03, T:0.32
Consensus pattern (30 bp):
ACATTTCCCTCCAAAAGATTTCCCTCCAAA
Found at i:7858449 original size:15 final size:15
Alignment explanation
Indices: 7858413--7858476 Score: 71
Period size: 15 Copynumber: 4.3 Consensus size: 15
7858403 GTTCCCCACA
7858413 CATTTCCCTCCAAA-
1 CATTTCCCTCCAAAG
7858427 -ATTTTCCCTCCAAAG
1 CA-TTTCCCTCCAAAG
7858442 CATTTCCCTCCAAAAG
1 CATTTCCCTCC-AAAG
* *
7858458 -ATTTCCCTTCAAAA
1 CATTTCCCTCCAAAG
7858472 CATTT
1 CATTT
7858477 GGGAGGGAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
13 1 0.02
14 15 0.35
15 22 0.51
16 5 0.12
ACGTcount: A:0.30, C:0.34, G:0.03, T:0.33
Consensus pattern (15 bp):
CATTTCCCTCCAAAG
Found at i:7858718 original size:15 final size:15
Alignment explanation
Indices: 7858698--7858742 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
7858688 CGAGCCATCT
7858698 TGCGTGCCGCGCACC
1 TGCGTGCCGCGCACC
* *
7858713 TGCGTGCCGCGTACT
1 TGCGTGCCGCGCACC
* *
7858728 TGAGTGCCGCACACC
1 TGCGTGCCGCGCACC
7858743 CCTACTGGCC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.11, C:0.40, G:0.31, T:0.18
Consensus pattern (15 bp):
TGCGTGCCGCGCACC
Found at i:7858981 original size:51 final size:51
Alignment explanation
Indices: 7858924--7859116 Score: 208
Period size: 51 Copynumber: 3.8 Consensus size: 51
7858914 TTCTGGCACA
* * * * *
7858924 CTGTCGGGCTAGCTCTCCCAAGGGCCTGTGCTGCGCACCCCTTCTAGCATC
1 CTGTCGGGCTAGCTCACCCAAGGGCCTGTGCCGTGCGCCCCTGCTAGCATC
** * * * *
7858975 CTGTCGGGCTAGCTTGCCCAGGGGTCGGTGCCGTGCGCCCCTGCTAGCGTC
1 CTGTCGGGCTAGCTCACCCAAGGGCCTGTGCCGTGCGCCCCTGCTAGCATC
* * *
7859026 CTGTCGGGCTAGCTCACCTAGGGGCCTGTGCCGTACGCCCCTGCTAGCATC
1 CTGTCGGGCTAGCTCACCCAAGGGCCTGTGCCGTGCGCCCCTGCTAGCATC
* * **
7859077 CCGTCGGGCTGGCTCACCCATA-GGCCTGTGATGTGCGCCC
1 CTGTCGGGCTAGCTCACCCA-AGGGCCTGTGCCGTGCGCCC
7859117 TTAATGGCAT
Statistics
Matches: 117, Mismatches: 24, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
51 117 1.00
ACGTcount: A:0.10, C:0.37, G:0.31, T:0.22
Consensus pattern (51 bp):
CTGTCGGGCTAGCTCACCCAAGGGCCTGTGCCGTGCGCCCCTGCTAGCATC
Found at i:7859176 original size:51 final size:51
Alignment explanation
Indices: 7859072--7859169 Score: 137
Period size: 51 Copynumber: 1.9 Consensus size: 51
7859062 GCCCCTGCTA
7859072 GCATCCCGTCGGGCTGGCTCACCCATAGGCCTGTGATGTGCGCCCTTAATG
1 GCATCCCGTCGGGCTGGCTCACCCATAGGCCTGTGATGTGCGCCCTTAATG
** *
7859123 GCATCCCGTCGGGAC-GGCTTGCCCA-AGGGCCTGTGATGTGGGCCCTT
1 GCATCCCGTCGGG-CTGGCTCACCCATA-GGCCTGTGATGTGCGCCCTT
7859170 GTTGGCACCC
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
50 1 0.02
51 40 0.95
52 1 0.02
ACGTcount: A:0.12, C:0.33, G:0.33, T:0.22
Consensus pattern (51 bp):
GCATCCCGTCGGGCTGGCTCACCCATAGGCCTGTGATGTGCGCCCTTAATG
Found at i:7859198 original size:51 final size:51
Alignment explanation
Indices: 7859072--7859198 Score: 134
Period size: 51 Copynumber: 2.5 Consensus size: 51
7859062 GCCCCTGCTA
* *
7859072 GCATCCCGTCGGGCTGGCTCACCCATAGGCCTGTGATGTGCGCCCTTAATG
1 GCATCCCGCCGGGCTGGCTCGCCCATAGGCCTGTGATGTGCGCCCTTAATG
* * * **
7859123 GCATCCCGTCGGGAC-GGCTTGCCCA-AGGGCCTGTGATGTGGGCCCTTGTTG
1 GCATCCCGCCGGG-CTGGCTCGCCCATA-GGCCTGTGATGTGCGCCCTTAATG
*
7859174 GCA-CCCTGCCGGGCTAGCTCGCCCA
1 GCATCCC-GCCGGGCTGGCTCGCCCA
7859199 GGGTCTTGTG
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
50 5 0.08
51 58 0.91
52 1 0.02
ACGTcount: A:0.12, C:0.35, G:0.32, T:0.21
Consensus pattern (51 bp):
GCATCCCGCCGGGCTGGCTCGCCCATAGGCCTGTGATGTGCGCCCTTAATG
Found at i:7876147 original size:21 final size:21
Alignment explanation
Indices: 7876107--7876156 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
7876097 ATCATCCACG
* *
7876107 TATCCTCCTCCACCAGCTGCT
1 TATCCTCCCCCACCAGCTGCA
**
7876128 TATCCTCCCCCACCTTCTGCA
1 TATCCTCCCCCACCAGCTGCA
*
7876149 TACCCTCC
1 TATCCTCC
7876157 ACCTCCTCCA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.14, C:0.52, G:0.06, T:0.28
Consensus pattern (21 bp):
TATCCTCCCCCACCAGCTGCA
Found at i:7876169 original size:27 final size:27
Alignment explanation
Indices: 7876131--7876184 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
7876121 AGCTGCTTAT
*
7876131 CCTCCCCCACCTTCTGCATACCCTCCA
1 CCTCCCCCACCTTCAGCATACCCTCCA
* *
7876158 CCTCCTCCACCTTCAGCATATCCTCCA
1 CCTCCCCCACCTTCAGCATACCCTCCA
7876185 GCTACATATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.17, C:0.56, G:0.04, T:0.24
Consensus pattern (27 bp):
CCTCCCCCACCTTCAGCATACCCTCCA
Found at i:7888730 original size:3 final size:3
Alignment explanation
Indices: 7888722--7888751 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
7888712 AAGTTTTCAA
7888722 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
7888752 CCACCCCACC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:7889711 original size:2 final size:2
Alignment explanation
Indices: 7889704--7889730 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7889694 CATGATTCAT
7889704 GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA G
7889731 GAATGTGTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7894425 original size:15 final size:15
Alignment explanation
Indices: 7894405--7894473 Score: 93
Period size: 15 Copynumber: 4.6 Consensus size: 15
7894395 ATTACAATGC
* *
7894405 AATGTGATTACAGGT
1 AATGTGATTGCAAGT
7894420 AATGTGATTGCAAGT
1 AATGTGATTGCAAGT
*
7894435 AATGTAATTGCAAGT
1 AATGTGATTGCAAGT
* *
7894450 AATGTAATTGCAAGC
1 AATGTGATTGCAAGT
7894465 AATGTGATT
1 AATGTGATT
7894474 ACAGAGAAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 49 1.00
ACGTcount: A:0.36, C:0.07, G:0.23, T:0.33
Consensus pattern (15 bp):
AATGTGATTGCAAGT
Found at i:7894439 original size:30 final size:30
Alignment explanation
Indices: 7894403--7894477 Score: 105
Period size: 30 Copynumber: 2.5 Consensus size: 30
7894393 ACATTACAAT
*
7894403 GCAATGTGATTACAGGTAATGTGATTGCAA
1 GCAATGTGATTACAGGTAATGTAATTGCAA
* * * *
7894433 GTAATGTAATTGCAAGTAATGTAATTGCAA
1 GCAATGTGATTACAGGTAATGTAATTGCAA
7894463 GCAATGTGATTACAG
1 GCAATGTGATTACAG
7894478 AGAAAATAAC
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.36, C:0.09, G:0.24, T:0.31
Consensus pattern (30 bp):
GCAATGTGATTACAGGTAATGTAATTGCAA
Found at i:7894688 original size:29 final size:27
Alignment explanation
Indices: 7894622--7895060 Score: 166
Period size: 28 Copynumber: 15.4 Consensus size: 27
7894612 AAAATATAAG
* *
7894622 TTTAATATATTTATATTTTTTATTATTAATT
1 TTTAATATA-ATATA-TTTTAATTA-T-ATT
*
7894653 TTT-ATATAATATCATTCTTAAATATATT
1 TTTAATATAATAT-ATT-TTAATTATATT
* *
7894681 TTTAATATCATATATTTT--TTTTATT
1 TTTAATATAATATATTTTAATTATATT
* * *
7894706 TATTATTATAATATTTTATTTTTTATTTTATT
1 T-TTAATATAATA---TA-TTTTAATTATATT
* *
7894738 TTTAATATATTTATATTTTTATTATTAATT
1 TTTAATATA-ATATATTTTAATTA-T-ATT
*
7894768 TTT-ATATAATATCATTTCTTAAATATATT
1 TTTAATATAATAT-A-TT-TTAATTATATT
* * * *
7894797 TTTAATATCATATATGTTATTTTTATT
1 TTTAATATAATATATTTTAATTATATT
*
7894824 TATT-ATAT-ATAT-TTTTATATTTTA-T
1 T-TTAATATAATATATTTTA-ATTATATT
* * *
7894849 TTTAATATATTTTATATTTATATTATTAAT
1 TTTAATATAATATAT-TTTA-ATTA-TATT
*
7894879 TTT-ATATAATATCATTTCTTAAATATATT
1 TTTAATATAATAT-A-TT-TTAATTATATT
* * * *
7894908 TTTAATGTCATATATTTTATTTTTATT
1 TTTAATATAATATATTTTAATTATATT
* *
7894935 TATTATTAT-A-ATATTTTATATTTTATT
1 T-TTAATATAATATATTTTA-ATTATATT
*
7894962 TTTAATTATATTATA-TTTATATTATTAATT
1 TTTAA-TATAATATATTTTA-ATTA-T-ATT
*
7894992 TTT-ATATAATATCATATTTTAAATATATTT
1 TTTAATAT-A-AT-ATATTTTAATTATA-TT
* * * *
7895022 TTTAATGTCATATATTTTATTTTTATT
1 TTTAATATAATATATTTTAATTATATT
*
7895049 TATTATTATAAT
1 T-TTAATATAAT
7895061 TTTAATATTT
Statistics
Matches: 316, Mismatches: 49, Indels: 89
0.70 0.11 0.20
Matches are distributed among these distances:
24 2 0.01
25 16 0.05
26 31 0.10
27 40 0.13
28 67 0.21
29 57 0.18
30 61 0.19
31 28 0.09
32 14 0.04
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (27 bp):
TTTAATATAATATATTTTAATTATATT
Found at i:7894734 original size:12 final size:12
Alignment explanation
Indices: 7894717--7894772 Score: 58
Period size: 12 Copynumber: 4.2 Consensus size: 12
7894707 ATTATTATAA
7894717 TATTTTATTTTT
1 TATTTTATTTTT
7894729 TATTTTATTTTT
1 TATTTTATTTTT
7894741 AATATATTTATATTTT
1 --TAT-TTTAT-TTTT
*
7894757 TATTATTAATTTT
1 TATT-TTATTTTT
7894770 TAT
1 TAT
7894773 ATAATATCAT
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
12 12 0.32
13 8 0.21
14 9 0.24
15 5 0.13
16 4 0.11
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (12 bp):
TATTTTATTTTT
Found at i:7894748 original size:23 final size:23
Alignment explanation
Indices: 7894690--7894766 Score: 57
Period size: 23 Copynumber: 3.1 Consensus size: 23
7894680 TTTTAATATC
*
7894690 ATATATTTTTTTTATTTATTATTATA
1 ATATATTTTTTAT-TTTATT-TT-TA
7894716 ATATTTTATTTTTTATTTTATTTTTA
1 ATA---TATTTTTTATTTTATTTTTA
* *
7894742 ATATA-TTTATATTTTTATTATTA
1 ATATATTTTTTA-TTTTATTTTTA
7894765 AT
1 AT
7894767 TTTTATATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
22 5 0.11
23 14 0.32
26 8 0.18
27 2 0.05
28 6 0.14
29 9 0.20
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (23 bp):
ATATATTTTTTATTTTATTTTTA
Found at i:7894795 original size:42 final size:41
Alignment explanation
Indices: 7894749--7894911 Score: 113
Period size: 40 Copynumber: 4.2 Consensus size: 41
7894739 TTAATATATT
7894749 TATATTTTTATTATTAATTTTTATATAATATCATTTCTTAAA
1 TATATTTTTATTATTAATTTTTAT-TAATATCATTTCTTAAA
* * * * * *
7894791 TATATTTTTAATATCATATATGTTATT--T-TTATTTATTATA
1 TATATTTTTATTATTA-AT-TTTTATTAATATCATTTCTTAAA
*
7894831 TATATTTTTA-TATT--TTATT-TTAATAT-A--T-TT---
1 TATATTTTTATTATTAATTTTTATTAATATCATTTCTTAAA
*
7894861 TATATTTATATTATTAA-TTTTATATAATATCATTTCTTAAA
1 TATATTTTTATTATTAATTTTTAT-TAATATCATTTCTTAAA
7894902 TATATTTTTA
1 TATATTTTTA
7894912 ATGTCATATA
Statistics
Matches: 93, Mismatches: 11, Indels: 35
0.67 0.08 0.25
Matches are distributed among these distances:
30 9 0.10
31 4 0.04
32 3 0.03
33 3 0.03
34 9 0.10
35 4 0.04
36 3 0.03
37 2 0.02
38 2 0.02
39 3 0.03
40 19 0.20
41 10 0.11
42 14 0.15
43 3 0.03
44 5 0.05
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (41 bp):
TATATTTTTATTATTAATTTTTATTAATATCATTTCTTAAA
Found at i:7894825 original size:25 final size:27
Alignment explanation
Indices: 7894796--7895076 Score: 96
Period size: 25 Copynumber: 10.1 Consensus size: 27
7894786 TTAAATATAT
7894796 TTTTAATATCATATA-TGTTAT-TTTTA
1 TTTTAATAT-ATATATTGTTATATTTTA
* *
7894822 -TTTATTATATATATTTTTATATTTTA
1 TTTTAATATATATATTGTTATATTTTA
*
7894848 TTTTAATATATTTTATAT-TTATATTATTAA
1 TTTTAATATA-TATAT-TGTTATATT-TT-A
* * *
7894878 TTTT-ATATAATATCATTTCTTA-AATATA
1 TTTTAATAT-ATAT-A-TTGTTATATTTTA
*
7894906 TTTTTAATGTCATATATT-TTAT-TTTTA
1 -TTTTAATAT-ATATATTGTTATATTTTA
*
7894933 -TTTATTATTATAATATT-TTATATTTTA
1 TTTTAATA-TAT-ATATTGTTATATTTTA
7894960 TTTTTAAT-TATATTATAT-TTATATTATTAA
1 -TTTTAATATATA-TAT-TGTTATATT-TT-A
*
7894990 TTTTTATATAATATCATATT-TTAAATATATT-
1 -TTTTA-AT-ATAT-ATATTGTT--ATATTTTA
*
7895021 TTTTAATGTCATATATT-TTAT-TTTTA
1 TTTTAATAT-ATATATTGTTATATTTTA
*
7895047 -TTTATTAT-TATAATT-TTAATATTTTA
1 TTTTAATATATAT-ATTGTT-ATATTTTA
7895073 TTTT
1 TTTT
7895077 CATTTCTTTA
Statistics
Matches: 201, Mismatches: 19, Indels: 69
0.70 0.07 0.24
Matches are distributed among these distances:
23 3 0.01
24 10 0.05
25 30 0.15
26 23 0.11
27 28 0.14
28 30 0.15
29 26 0.13
30 29 0.14
31 6 0.03
32 3 0.01
33 8 0.04
34 5 0.02
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (27 bp):
TTTTAATATATATATTGTTATATTTTA
Found at i:7894959 original size:112 final size:113
Alignment explanation
Indices: 7894622--7895076 Score: 687
Period size: 111 Copynumber: 4.0 Consensus size: 113
7894612 AAAATATAAG
*
7894622 TTTAATATATTTATATTTTTTATTATTAATTTTTATATAATATCA-TTCTTAAATATATTTTTAA
1 TTTAATATATTTATA-TTTATATTATTAATTTTTATATAATATCATTTCTTAAATATATTTTTAA
7894686 TATCATATA-TTT-TTTTTATTTATTATTATAATATTTTATTTTTTATTTTATT
65 TATCATATATTTTATTTTTATTTATTATTATAATATTTTA-----TATTTTATT
*
7894738 TTTAATATATTTATATTTTTATTATTAATTTTTATATAATATCATTTCTTAAATATATTTTTAAT
1 TTTAATATATTTATATTTATATTATTAATTTTTATATAATATCATTTCTTAAATATATTTTTAAT
*
7894803 ATCATATATGTTATTTTTATTTATTA-TAT-ATATTTTTATATTTTA-T
66 ATCATATATTTTATTTTTATTTATTATTATAATA-TTTTATATTTTATT
7894849 TTTAATATATTTTATATTTATATTATTAA-TTTTATATAATATCATTTCTTAAATATATTTTTAA
1 TTTAATATA-TTTATATTTATATTATTAATTTTTATATAATATCATTTCTTAAATATATTTTTAA
*
7894913 TGTCATATATTTTATTTTTATTTATTATTATAATATTTTATATTTTATT
65 TATCATATATTTTATTTTTATTTATTATTATAATATTTTATATTTTATT
7894962 TTTAAT-TATATTATATTTATATTATTAATTTTTATATAATATCATATT-TTAAATATATTTTTT
1 TTTAATATAT-TTATATTTATATTATTAATTTTTATATAATATCAT-TTCTTAAATATA-TTTTT
* *
7895025 AATGTCATATATTTTATTTTTATTTATTATTATAAT-TTTAATATTTTATT
63 AATATCATATATTTTATTTTTATTTATTATTATAATATTTTATATTTTATT
7895075 TT
1 TT
7895077 CATTTCTTTA
Statistics
Matches: 322, Mismatches: 5, Indels: 27
0.91 0.01 0.08
Matches are distributed among these distances:
111 71 0.22
112 60 0.19
113 50 0.16
114 43 0.13
115 29 0.09
116 46 0.14
117 10 0.03
118 13 0.04
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (113 bp):
TTTAATATATTTATATTTATATTATTAATTTTTATATAATATCATTTCTTAAATATATTTTTAAT
ATCATATATTTTATTTTTATTTATTATTATAATATTTTATATTTTATT
Found at i:7894999 original size:23 final size:23
Alignment explanation
Indices: 7894931--7894999 Score: 67
Period size: 23 Copynumber: 3.1 Consensus size: 23
7894921 ATTTTATTTT
7894931 TATTTATTATTA-TAATATTTTATA
1 TATTTA-TATTATTAAT-TTTTATA
*
7894955 T-TTTAT-TT-TTAA-TTATATTA
1 TATTTATATTATTAATTTTTA-TA
7894975 TATTTATATTATTAATTTTTATA
1 TATTTATATTATTAATTTTTATA
7894998 TA
1 TA
7895000 ATATCATATT
Statistics
Matches: 37, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
19 4 0.11
20 3 0.08
21 10 0.27
22 3 0.08
23 12 0.32
24 5 0.14
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (23 bp):
TATTTATATTATTAATTTTTATA
Found at i:7895016 original size:224 final size:224
Alignment explanation
Indices: 7894622--7895076 Score: 708
Period size: 224 Copynumber: 2.0 Consensus size: 224
7894612 AAAATATAAG
*
7894622 TTTAATATATTTATATTTTTTATTATTAATTTTTATATAATATCATTCTTAAATATATTTTTAAT
1 TTTAATATATTTATATTTTATATTATTAATTTTTATATAATATCATTCTTAAATATATTTTTAAT
7894687 ATCATATATTTTTTTTATTTATTATTATAATATTTTATTTTTTATTTTATTTTTAATATATTTAT
66 ATCATATATTTTTTTTATTTATTATTATAATATTTTA----TTATTTTATTTTTAATATATTTAT
*
7894752 ATTTTTATTATTAATTTTTATATAATATCATTTCTTAAATATA-TTTTTAATATCATATATGTTA
127 ATTTATATTATTAATTTTTATATAATATCATTTCTTAAATATATTTTTTAATATCATATATGTTA
*
7894816 TTTTTATTTATTA-TATATATTTTTATATTTTAT
192 TTTTTATTTATTATTATA-ATTTTAATATTTTAT
7894849 TTTAATATATTT-TATATTTATATTATTAA-TTTTATATAATATCATTTCTTAAATATATTTTTA
1 TTTAATATATTTATAT-TTTATATTATTAATTTTTATATAATATCA-TTCTTAAATATATTTTTA
*
7894912 ATGTCATATATTTTATTTTTATTTATTATTATAATATTTTA-TATTTTATTTTTAAT-TATATTA
64 ATATCATATA-TTT-TTTTTATTTATTATTATAATATTTTATTATTTTATTTTTAATATAT-TTA
* *
7894975 TATTTATATTATTAATTTTTATATAATATCATATT-TTAAATATATTTTTTAATGTCATATATTT
126 TATTTATATTATTAATTTTTATATAATATCAT-TTCTTAAATATATTTTTTAATATCATATATGT
7895039 TATTTTTATTTATTATTATAATTTTAATATTTTAT
190 TATTTTTATTTATTATTATAATTTTAATATTTTAT
7895074 TTT
1 TTT
7895077 CATTTCTTTA
Statistics
Matches: 214, Mismatches: 6, Indels: 18
0.90 0.03 0.08
Matches are distributed among these distances:
223 3 0.01
224 58 0.27
225 51 0.24
226 22 0.10
227 51 0.24
228 3 0.01
229 26 0.12
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (224 bp):
TTTAATATATTTATATTTTATATTATTAATTTTTATATAATATCATTCTTAAATATATTTTTAAT
ATCATATATTTTTTTTATTTATTATTATAATATTTTATTATTTTATTTTTAATATATTTATATTT
ATATTATTAATTTTTATATAATATCATTTCTTAAATATATTTTTTAATATCATATATGTTATTTT
TATTTATTATTATAATTTTAATATTTTAT
Found at i:7895102 original size:33 final size:30
Alignment explanation
Indices: 7894691--7895115 Score: 116
Period size: 28 Copynumber: 14.6 Consensus size: 30
7894681 TTTAATATCA
*
7894691 TATATTTT-TTTTATTTATTATTATAATATTT
1 TATATTTTATTTTATTTATTAATAT-A-ATTT
*
7894722 TATTTTTTATTTTATTT-TTAATAT-A-TT
1 TATATTTTATTTTATTTATTAATATAATTT
*
7894749 TATATTTTTATTATTAATTT-TT-ATATAATAT
1 TATA-TTTTATT-TT-ATTTATTAATATAATTT
* * * *
7894780 CAT-TTCTTAAATATATTT-TTAATATCA---
1 TATATT-TT-ATTTTATTTATTAATATAATTT
*
7894807 TATATGTTATTTTTATTTATT-ATATATATTT
1 TATATTTTA-TTTTATTTATTAATATA-ATTT
7894838 T-TA---TATTTTA-TT-TTAATAT-ATTT
1 TATATTTTATTTTATTTATTAATATAATTT
* *
7894861 TATATTTATATTATTAATT-TT-ATATAATAT
1 TATATTT-TATT-TTATTTATTAATATAATTT
* * * * *
7894891 CAT-TTCTTAAATATATTT-TTAATGTCA---
1 TATATT-TT-ATTTTATTTATTAATATAATTT
*
7894918 TATATTTTATTTTTATTTATTATTATAA---
1 TATATTTTA-TTTTATTTATTAATATAATTT
*
7894946 TAT-TTTATATTTTATTT-TTAAT-T-ATAT
1 TATATTT-TATTTTATTTATTAATATAATTT
*
7894973 TATATTTATATTATTAATTT-TT-ATATAATAT
1 TATATTT-TATT-TT-ATTTATTAATATAATTT
* * * * * *
7895004 CATATTTTAAATATATTTTTTAATGTCA---
1 TATATTTT-ATTTTATTTATTAATATAATTT
*
7895032 TATATTTTATTTTTATTTATTATTATAATTT
1 TATATTTTA-TTTTATTTATTAATATAATTT
*
7895063 TAATATTTTATTTTCATTTCTTTAATATAAATTT
1 T-ATATTTTATTTT-ATTT-ATTAATAT-AATTT
7895097 TATATTATATATTTTATTT
1 TATATT-T-TATTTTATTT
7895116 TAATTTGTTT
Statistics
Matches: 300, Mismatches: 41, Indels: 103
0.68 0.09 0.23
Matches are distributed among these distances:
23 5 0.02
24 5 0.02
25 7 0.02
26 11 0.04
27 46 0.15
28 56 0.19
29 38 0.13
30 44 0.15
31 40 0.13
32 20 0.07
33 11 0.04
34 11 0.04
35 6 0.02
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (30 bp):
TATATTTTATTTTATTTATTAATATAATTT
Found at i:7899396 original size:19 final size:19
Alignment explanation
Indices: 7899372--7899409 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
7899362 GGCAAAACAT
7899372 TGTGAACATATCATCCATC
1 TGTGAACATATCATCCATC
*
7899391 TGTGAACATATCGTCCATC
1 TGTGAACATATCATCCATC
7899410 GAGGGGGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (19 bp):
TGTGAACATATCATCCATC
Found at i:7901608 original size:31 final size:33
Alignment explanation
Indices: 7901571--7901634 Score: 87
Period size: 34 Copynumber: 2.0 Consensus size: 33
7901561 AAGAGAGATT
* *
7901571 TATGTTAT-TATAA-ATTTTTATTATAATTTTA
1 TATGTTATATAAAATATTTTTATTACAATTTTA
7901602 TATGTTATATAAAATTATTTTTATTACAATTTT
1 TATGTTATATAAAA-TATTTTTATTACAATTTT
7901635 TTTATAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 8 0.29
32 4 0.14
34 16 0.57
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (33 bp):
TATGTTATATAAAATATTTTTATTACAATTTTA
Found at i:7913296 original size:22 final size:20
Alignment explanation
Indices: 7913261--7913303 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 20
7913251 ACATTATGTA
7913261 ATTTAAAAATAATAAATAAT
1 ATTTAAAAATAATAAATAAT
*
7913281 ATTTAAATCAATAATAATTAAT
1 ATTTAAA--AATAATAAATAAT
7913303 A
1 A
7913304 AGATTTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 7 0.35
22 13 0.65
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (20 bp):
ATTTAAAAATAATAAATAAT
Found at i:7932581 original size:29 final size:32
Alignment explanation
Indices: 7932533--7932604 Score: 84
Period size: 31 Copynumber: 2.4 Consensus size: 32
7932523 GAACAAAATG
7932533 AATTT-AAAA-TA-AAAACATTTAAAAT-TTT
1 AATTTAAAAATTATAAAACATTTAAAATCTTT
* *
7932561 -ATTTATAAATTATAAAA-ATTTAATATCTTT
1 AATTTAAAAATTATAAAACATTTAAAATCTTT
7932591 AATTTAAAAATTAT
1 AATTTAAAAATTAT
7932605 TAATATTTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
27 4 0.11
28 3 0.08
29 10 0.28
30 7 0.19
31 12 0.33
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (32 bp):
AATTTAAAAATTATAAAACATTTAAAATCTTT
Found at i:7932625 original size:17 final size:17
Alignment explanation
Indices: 7932605--7932638 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
7932595 TAAAAATTAT
7932605 TAATATTTT-AATTATAA
1 TAAT-TTTTAAATTATAA
7932622 TAATTTTTAAATTATAA
1 TAATTTTTAAATTATAA
7932639 ATAAAATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TAATTTTTAAATTATAA
Found at i:7932626 original size:24 final size:23
Alignment explanation
Indices: 7932568--7932628 Score: 72
Period size: 23 Copynumber: 2.6 Consensus size: 23
7932558 TTTATTTATA
*
7932568 AATTATAAAAATTTAATATCTTT
1 AATTATAAAATTTTAATATCTTT
7932591 AATT-TAAAAATTATTAATAT-TTT
1 AATTAT-AAAATT-TTAATATCTTT
7932614 AATTATAATAATTTT
1 AATTATAA-AATTTT
7932629 TAAATTATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
22 1 0.03
23 20 0.61
24 12 0.36
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (23 bp):
AATTATAAAATTTTAATATCTTT
Found at i:7932631 original size:24 final size:24
Alignment explanation
Indices: 7932579--7932631 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
7932569 ATTATAAAAA
7932579 TTTAATATCTTTAATTTAAAAATT
1 TTTAATATCTTTAATTTAAAAATT
* *
7932603 ATTAATAT-TTTAATTATAATAATT
1 TTTAATATCTTTAATT-TAAAAATT
7932627 TTTAA
1 TTTAA
7932632 ATTATAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 7 0.28
24 18 0.72
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (24 bp):
TTTAATATCTTTAATTTAAAAATT
Found at i:7949957 original size:40 final size:40
Alignment explanation
Indices: 7949902--7949983 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
7949892 ATAATTTTAC
7949902 AATCTACACTTAATACTAGCTCAAGTAATTGCTTATTCTT
1 AATCTACACTTAATACTAGCTCAAGTAATTGCTTATTCTT
7949942 AATCTACACTTAATACTAGCTCAAGTAATTGCTTATTCTT
1 AATCTACACTTAATACTAGCTCAAGTAATTGCTTATTCTT
7949982 AA
1 AA
7949984 AGGAATCATG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.34, C:0.20, G:0.07, T:0.39
Consensus pattern (40 bp):
AATCTACACTTAATACTAGCTCAAGTAATTGCTTATTCTT
Found at i:7954795 original size:2 final size:2
Alignment explanation
Indices: 7954788--7954817 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
7954778 TGTACCACAG
*
7954788 TA TA TA TA TA TA GA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7954818 GTACATTGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:7961837 original size:4 final size:4
Alignment explanation
Indices: 7961828--7961864 Score: 65
Period size: 4 Copynumber: 9.2 Consensus size: 4
7961818 GAAGACTACC
*
7961828 AGAA AGAA AGAA AGAA AGAA AGAA AGAA CGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
7961865 AACAAAATCC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.73, C:0.03, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:7969643 original size:5 final size:5
Alignment explanation
Indices: 7969633--7969657 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
7969623 TGTTTCTGCA
7969633 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
7969658 TCAAGATTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:7973439 original size:17 final size:17
Alignment explanation
Indices: 7973417--7973462 Score: 92
Period size: 17 Copynumber: 2.7 Consensus size: 17
7973407 TTATGCAAAA
7973417 CAAGTACTGTTTATGAT
1 CAAGTACTGTTTATGAT
7973434 CAAGTACTGTTTATGAT
1 CAAGTACTGTTTATGAT
7973451 CAAGTACTGTTT
1 CAAGTACTGTTT
7973463 TGGACTTGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.28, C:0.13, G:0.17, T:0.41
Consensus pattern (17 bp):
CAAGTACTGTTTATGAT
Found at i:7975370 original size:22 final size:22
Alignment explanation
Indices: 7975345--7975386 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7975335 ATTGATGTAT
* *
7975345 AATTTTTTATTTTAAAAAAATA
1 AATTTTTTAATTAAAAAAAATA
7975367 AATTTTTTAATTAAAAAAAA
1 AATTTTTTAATTAAAAAAAA
7975387 ATCTTATCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
AATTTTTTAATTAAAAAAAATA
Found at i:7975384 original size:23 final size:22
Alignment explanation
Indices: 7975345--7975388 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
7975335 ATTGATGTAT
**
7975345 AATTTTTTATTTTAAAAAAATA
1 AATTTTTTATTAAAAAAAAATA
7975367 AATTTTTTAATTAAAAAAAAAT
1 AATTTTTT-ATTAAAAAAAAAT
7975389 CTTATCTGCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
AATTTTTTATTAAAAAAAAATA
Found at i:7976303 original size:19 final size:19
Alignment explanation
Indices: 7976275--7976311 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
7976265 CAAGTGTCCA
7976275 ATGGACTTACCAACAAATC
1 ATGGACTTACCAACAAATC
*
7976294 ATGGATTTACCAACAAAT
1 ATGGACTTACCAACAAAT
7976312 AATGATAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.43, C:0.22, G:0.11, T:0.24
Consensus pattern (19 bp):
ATGGACTTACCAACAAATC
Found at i:7981796 original size:2 final size:2
Alignment explanation
Indices: 7981789--7981814 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7981779 GGTTGATATT
7981789 GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA
7981815 ACAGGTTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7984969 original size:29 final size:29
Alignment explanation
Indices: 7984911--7984970 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
7984901 TTTTACATTG
* *
7984911 TTTTCGTATACCTATTCATATACATATTT
1 TTTTCGTATACCTATTCACATACAGATTT
* * *
7984940 TTTTCTTATACCTATTTACATACAGCTTT
1 TTTTCGTATACCTATTCACATACAGATTT
7984969 TT
1 TT
7984971 CTGTTGTTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.25, C:0.18, G:0.03, T:0.53
Consensus pattern (29 bp):
TTTTCGTATACCTATTCACATACAGATTT
Found at i:7988290 original size:16 final size:16
Alignment explanation
Indices: 7988266--7988303 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7988256 TAAGCCAAAT
7988266 ATTTA-AGTGTAAAAA
1 ATTTATAGTGTAAAAA
*
7988281 ATTTATAGTGTTAAAA
1 ATTTATAGTGTAAAAA
*
7988297 ATATATA
1 ATTTATA
7988304 AAAATTTTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 5 0.25
16 15 0.75
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (16 bp):
ATTTATAGTGTAAAAA
Found at i:7991893 original size:25 final size:25
Alignment explanation
Indices: 7991865--7991921 Score: 64
Period size: 24 Copynumber: 2.2 Consensus size: 25
7991855 TGTAATAACT
7991865 TTTTTTAACTATGACATATAAC-AT-A
1 TTTTTT-AC-ATGACATATAACAATAA
*
7991890 TTTTTGTACATGACGTATAACAATAA
1 TTTTT-TACATGACATATAACAATAA
7991916 TTTTTT
1 TTTTTT
7991922 TTTCAACATG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
24 11 0.39
25 10 0.36
26 7 0.25
ACGTcount: A:0.35, C:0.11, G:0.07, T:0.47
Consensus pattern (25 bp):
TTTTTTACATGACATATAACAATAA
Found at i:7991922 original size:79 final size:79
Alignment explanation
Indices: 7991786--7991994 Score: 233
Period size: 80 Copynumber: 2.6 Consensus size: 79
7991776 AACAATAACA
* * * * * * * * *
7991786 TTTTTTCAAC-ATGAC-TATAACATGTTTTATATATAACATGTAACAAGAAATTTTTTTTTTAAC
1 TTTTTTTAACTATGACATATAACATATTTTGTACATGACGTATAACAA-TAATTTTTTTTTCAAC
*
7991849 ATAGCGTGTAATAAC
65 ATAGCGTGTAACAAC
7991864 TTTTTTTAACTATGACATATAACATATTTTTGTACATGACGTATAACAATAATTTTTTTTTCAAC
1 TTTTTTTAACTATGACATATAACATA-TTTTGTACATGACGTATAACAATAATTTTTTTTTCAAC
* *
7991929 ATGGTGTGTAACAAC
65 ATAGCGTGTAACAAC
* * * * *
7991944 TTTTTTTAACTATGGCGTATAACTTATTTTGTACATGACGTGTAATAATAA
1 TTTTTTTAACTATGACATATAACATATTTTGTACATGACGTATAACAATAA
7991995 CATTTCTTCA
Statistics
Matches: 111, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
78 9 0.08
79 28 0.25
80 57 0.51
81 17 0.15
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.44
Consensus pattern (79 bp):
TTTTTTTAACTATGACATATAACATATTTTGTACATGACGTATAACAATAATTTTTTTTTCAACA
TAGCGTGTAACAAC
Found at i:7991966 original size:26 final size:25
Alignment explanation
Indices: 7991839--7991966 Score: 80
Period size: 26 Copynumber: 4.9 Consensus size: 25
7991829 CAAGAAATTT
* * *
7991839 TTTTTTTAACATAGCGTGTAATAAC
1 TTTTTTTAACATGGCGTATAACAAC
* *
7991864 TTTTTTTAACTATGACATATAACATA-
1 TTTTTTTAAC-ATGGCGTATAACA-AC
* * *
7991890 TTTTTGT-ACATGACGTATAACAATAATT
1 TTTTTTTAACATGGCGTATAAC---AA-C
* *
7991918 TTTTTTTCAACATGGTGTGTAACAAC
1 TTTTTTT-AACATGGCGTATAACAAC
7991944 TTTTTTTAACTATGGCGTATAAC
1 TTTTTTTAAC-ATGGCGTATAAC
7991967 TTATTTTGTA
Statistics
Matches: 79, Mismatches: 14, Indels: 19
0.71 0.12 0.17
Matches are distributed among these distances:
24 11 0.14
25 15 0.19
26 32 0.41
27 4 0.05
28 6 0.08
30 11 0.14
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.45
Consensus pattern (25 bp):
TTTTTTTAACATGGCGTATAACAAC
Found at i:7999431 original size:3 final size:3
Alignment explanation
Indices: 7999423--7999462 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
7999413 TTTACTATTT
*
7999423 ATA ATA ATA ATA ATA ATA ATA ATA ACA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7999463 CTCATATAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:8013427 original size:30 final size:30
Alignment explanation
Indices: 8013391--8013460 Score: 140
Period size: 30 Copynumber: 2.3 Consensus size: 30
8013381 TATCTAAAAA
8013391 AATAAAAAAATTAATAATTTTTTTAATTTT
1 AATAAAAAAATTAATAATTTTTTTAATTTT
8013421 AATAAAAAAATTAATAATTTTTTTAATTTT
1 AATAAAAAAATTAATAATTTTTTTAATTTT
8013451 AATAAAAAAA
1 AATAAAAAAA
8013461 AGGTCTTATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (30 bp):
AATAAAAAAATTAATAATTTTTTTAATTTT
Found at i:8022697 original size:19 final size:19
Alignment explanation
Indices: 8022673--8022712 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
8022663 TTATATGTTT
*
8022673 AATAAAATATATTTTTTAA
1 AATAAAATATATATTTTAA
* *
8022692 AATAAATTATCTATTTTAA
1 AATAAAATATATATTTTAA
8022711 AA
1 AA
8022713 GTTAATAAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (19 bp):
AATAAAATATATATTTTAA
Found at i:8029036 original size:22 final size:22
Alignment explanation
Indices: 8029005--8029051 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
8028995 AAAATTAAAT
*
8029005 TTAAATTAATAAAATTTATTATA
1 TTAAATTAATAAAATATATTA-A
*
8029028 TTAAA-TAATAATATATATTAA
1 TTAAATTAATAAAATATATTAA
8029049 TTA
1 TTA
8029052 TATTTTATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 4 0.18
22 13 0.59
23 5 0.23
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
TTAAATTAATAAAATATATTAA
Found at i:8033922 original size:48 final size:48
Alignment explanation
Indices: 8033854--8033951 Score: 142
Period size: 48 Copynumber: 2.0 Consensus size: 48
8033844 TATGGTATAT
* * * *
8033854 ATAGGAGTTGGATGGCAGTCGCCAGGTGGCACTTGGCTTTCTATATTA
1 ATAGGAGTTGGACGGCAGTCGCCAGGTCGCACCTGGCTTTCAATATTA
* *
8033902 ATAGGAGTTGGACGGTAGTCGCCAGGTCGTACCTGGCTTTCAATATTA
1 ATAGGAGTTGGACGGCAGTCGCCAGGTCGCACCTGGCTTTCAATATTA
8033950 AT
1 AT
8033952 GGTATTGTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.31
Consensus pattern (48 bp):
ATAGGAGTTGGACGGCAGTCGCCAGGTCGCACCTGGCTTTCAATATTA
Found at i:8035851 original size:2 final size:2
Alignment explanation
Indices: 8035844--8035868 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8035834 CATAACTCCA
8035844 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
8035869 ATTTTTGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8038651 original size:18 final size:19
Alignment explanation
Indices: 8038628--8038677 Score: 70
Period size: 18 Copynumber: 2.7 Consensus size: 19
8038618 TTTATATTAT
8038628 TATAAT-TAAAATAAAATA
1 TATAATATAAAATAAAATA
8038646 TATAATATAAAAATAAAATA
1 TATAATAT-AAAATAAAATA
8038666 -A-AATATAAAATA
1 TATAATATAAAATA
8038678 TAAAAAATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.20
18 11 0.37
19 2 0.07
20 11 0.37
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (19 bp):
TATAATATAAAATAAAATA
Found at i:8038666 original size:16 final size:17
Alignment explanation
Indices: 8038629--8038694 Score: 57
Period size: 18 Copynumber: 3.8 Consensus size: 17
8038619 TTATATTATT
*
8038629 ATAAT-TAAAATAAAATA
1 ATAATATAAAATATAA-A
8038646 TATAATATAAAA-ATAAA
1 -ATAATATAAAATATAAA
8038663 ATAAAATATAAAATATAAA
1 AT--AATATAAAATATAAA
*
8038682 A-AATATATAATAT
1 ATAATATAAAATAT
8038695 TATTCACAGC
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
16 13 0.31
17 1 0.02
18 17 0.40
19 11 0.26
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
ATAATATAAAATATAAA
Found at i:8038689 original size:18 final size:18
Alignment explanation
Indices: 8038635--8038691 Score: 71
Period size: 18 Copynumber: 3.1 Consensus size: 18
8038625 TATTATAATT
8038635 AAAATAAAATATATAATATA
1 AAAATAAAATA-A-AATATA
8038655 AAAATAAAATAAAATATA
1 AAAATAAAATAAAATATA
*
8038673 AAATATAAAA-AATATATA
1 AAA-ATAAAATAAAATATA
8038691 A
1 A
8038692 TATTATTCAC
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 17 0.49
19 7 0.20
20 11 0.31
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (18 bp):
AAAATAAAATAAAATATA
Found at i:8038691 original size:25 final size:25
Alignment explanation
Indices: 8038634--8038683 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
8038624 TTATTATAAT
*
8038634 TAAAATAAAATATATAATATAAAAA
1 TAAAATAAAATATAAAATATAAAAA
8038659 TAAAATAAAATATAAAATATAAAAA
1 TAAAATAAAATATAAAATATAAAAA
8038684 ATATATAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (25 bp):
TAAAATAAAATATAAAATATAAAAA
Found at i:8040203 original size:14 final size:14
Alignment explanation
Indices: 8040184--8040232 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
8040174 TTTTAAAGAA
8040184 TTAAATTATTTAAT
1 TTAAATTATTTAAT
* *
8040198 TTAAATTTTTTATAA
1 TTAAATTATTTA-AT
* *
8040213 ATAAATTAGTTAAT
1 TTAAATTATTTAAT
8040227 TTAAAT
1 TTAAAT
8040233 AATAATTAAT
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
14 17 0.63
15 10 0.37
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (14 bp):
TTAAATTATTTAAT
Found at i:8040586 original size:16 final size:16
Alignment explanation
Indices: 8040545--8040589 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
8040535 GAACTCCATG
*
8040545 TTCTTTTTTCTCTTTC
1 TTCTTTTTTTTCTTTC
*
8040561 TTCTTCTTTTTCTTTC
1 TTCTTTTTTTTCTTTC
*
8040577 TTTTTTTTTTTCT
1 TTCTTTTTTTTCT
8040590 CTCCTTACAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (16 bp):
TTCTTTTTTTTCTTTC
Found at i:8041750 original size:2 final size:2
Alignment explanation
Indices: 8041743--8041768 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8041733 ATGATAATGG
8041743 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8041769 CAATTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8045157 original size:18 final size:18
Alignment explanation
Indices: 8045134--8045170 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
8045124 TGCTTGGGCC
8045134 TTGGTGCATGCAAGAACT
1 TTGGTGCATGCAAGAACT
8045152 TTGGTGCATGCAAGAACT
1 TTGGTGCATGCAAGAACT
8045170 T
1 T
8045171 GGCTACTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (18 bp):
TTGGTGCATGCAAGAACT
Found at i:8063255 original size:27 final size:26
Alignment explanation
Indices: 8063228--8063300 Score: 77
Period size: 27 Copynumber: 3.0 Consensus size: 26
8063218 ATTTTGTTTT
8063228 ATTT-TAATTT-TT-AAATATTAATA
1 ATTTATAATTTATTCAAATATTAATA
8063251 ATTTATAATTTAGTTCAAATATTAATA
1 ATTTATAATTTA-TTCAAATATTAATA
* *
8063278 ATTGATCA-TT-TT-AAATATTAATA
1 ATTTATAATTTATTCAAATATTAATA
8063301 TTTTGTTTAT
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
23 15 0.34
24 8 0.18
26 4 0.09
27 17 0.39
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (26 bp):
ATTTATAATTTATTCAAATATTAATA
Found at i:8063362 original size:26 final size:25
Alignment explanation
Indices: 8063332--8063401 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 25
8063322 TAACATTATA
8063332 AAATATTAATATTTTATTTATAATTC
1 AAATATTAATATTTTATTTAT-ATTC
* * *
8063358 AAATATTATTATGATTATTTATATTT
1 AAATATTAATAT-TTTATTTATATTC
8063384 AAATATTAATAATTTTAT
1 AAATATTAAT-ATTTTAT
8063402 AATTTTATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
26 27 0.73
27 10 0.27
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (25 bp):
AAATATTAATATTTTATTTATATTC
Found at i:8063431 original size:28 final size:28
Alignment explanation
Indices: 8063347--8063433 Score: 90
Period size: 29 Copynumber: 3.1 Consensus size: 28
8063337 TTAATATTTT
* *
8063347 ATTTATAATTCAAATATTATT-A-TGATT
1 ATTTAT-ATTTAAATATTATTAATTGATA
* *
8063374 ATTTATATTTAAATATTAATAATTTTATA
1 ATTTATATTTAAATATTATTAA-TTGATA
8063403 ATTT-TATTTAAAATATTATTAATTGATA
1 ATTTATATTT-AAATATTATTAATTGATA
8063431 ATT
1 ATT
8063434 AAATTATTAA
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
26 12 0.24
27 7 0.14
28 13 0.26
29 18 0.36
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (28 bp):
ATTTATATTTAAATATTATTAATTGATA
Found at i:8063479 original size:144 final size:141
Alignment explanation
Indices: 8063083--8063615 Score: 585
Period size: 144 Copynumber: 3.7 Consensus size: 141
8063073 TTATTTTTGT
* *
8063083 TTTATTTTTAAATATTAAT-ATGTTATAATTTATTTAAAATACTAATAATTGATAGTTTAAATT-
1 TTTATTTTTAAATATTAATAAT-TTATAATTTATTTAAAATATTAATAATTGATAGATTAAATTA
* * * *
8063146 TTAATATTTTATTTAGAATTTAATCATTAGTATTATATAATATTACTATTTTA-TTATAATTTAA
65 TTAATATTTTA-TTA-TATTTAATCATTAATATTATAAAATATTAATATTTTATTTATAA-TTAA
*
8063210 ATATTATTATTTTGTTTTA
127 ATATTATTA---TG-ATTA
* * **
8063229 TTTTAATTTTTAAATATTAATAATTTATAATTTAGTTCAAATATTAATAATTGATCATTTTAAA-
1 -TTT-ATTTTTAAATATTAATAATTTATAATTTATTTAAAATATTAATAATTGAT-AGATTAAAT
* *
8063293 TATTAATATTTTGTTTATAATTTAATCATTAACATTATAAAATATTAATATTTTATTTATAATTC
63 TATTAATATTTT-ATTAT-ATTTAATCATTAATATTATAAAATATTAATATTTTATTTATAATT-
8063358 AAATATTATTATGATTA
125 AAATATTATTATGATTA
* *
8063375 TTTATATTTAAATATTAATAATTTTATAATTTTATTTAAAATATTATTAATTGATA-ATTAAATT
1 TTTATTTTTAAATATTAATAA-TTTATAA-TTTATTTAAAATATTAATAATTGATAGATTAAATT
* * *
8063439 ATTAATGTTTTATTATATTTCAATCACTAATATT-TAAAAATATTGATATTTTATTTATAAGTTA
64 ATTAATATTTTATTATATTT-AATCATTAATATTAT-AAAATATTAATATTTTATTTATAA-TTA
* * *
8063503 AATGTTATTACGATAA
126 AATATTATTATGATTA
* * * *
8063519 TTAATTTTAAAATATTAATAATTTATAATTTATTTAAAATATTAATAATTGAT-CATTTAATTAT
1 TTTATTTTTAAATATTAATAATTTATAATTTATTTAAAATATTAATAATTGATAGATTAAATTAT
* *
8063583 TAATATTTTATTTAAAATTTAATTATTAATATT
66 TAATATTTTA-TT-ATATTTAATCATTAATATT
8063616 TGAGGGTTGT
Statistics
Matches: 336, Mismatches: 33, Indels: 38
0.83 0.08 0.09
Matches are distributed among these distances:
142 42 0.12
143 25 0.07
144 97 0.29
145 24 0.07
146 25 0.07
147 5 0.01
148 45 0.13
149 56 0.17
150 17 0.05
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.53
Consensus pattern (141 bp):
TTTATTTTTAAATATTAATAATTTATAATTTATTTAAAATATTAATAATTGATAGATTAAATTAT
TAATATTTTATTATATTTAATCATTAATATTATAAAATATTAATATTTTATTTATAATTAAATAT
TATTATGATTA
Found at i:8063560 original size:27 final size:28
Alignment explanation
Indices: 8063514--8063577 Score: 94
Period size: 27 Copynumber: 2.3 Consensus size: 28
8063504 ATGTTATTAC
*
8063514 GATAATTAATTTTAAAATATTAATAATT
1 GATAATTTATTTTAAAATATTAATAATT
*
8063542 TATAATTTA-TTTAAAATATTAATAATT
1 GATAATTTATTTTAAAATATTAATAATT
*
8063569 GATCATTTA
1 GATAATTTA
8063578 ATTATTAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 25 0.78
28 7 0.22
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.48
Consensus pattern (28 bp):
GATAATTTATTTTAAAATATTAATAATT
Found at i:8063604 original size:19 final size:20
Alignment explanation
Indices: 8063547--8063605 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 20
8063537 TAATTTATAA
8063547 TTTATTTAAAATATTAATAAT
1 TTTATTTAAAATATTAAT-AT
* *
8063568 TGATCATTT-AATTATTAATAT
1 T--TTATTTAAAATATTAATAT
8063589 TTTATTTAAAAT-TTAAT
1 TTTATTTAAAATATTAAT
8063606 TATTAATATT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
19 10 0.32
20 3 0.10
21 4 0.13
22 9 0.29
23 5 0.16
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (20 bp):
TTTATTTAAAATATTAATAT
Found at i:8063616 original size:14 final size:14
Alignment explanation
Indices: 8063573--8063616 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
8063563 ATAATTGATC
8063573 ATTTAATTATTAAT
1 ATTTAATTATTAAT
* *
8063587 ATTTTA-T-TTAAA
1 ATTTAATTATTAAT
8063599 ATTTAATTATTAAT
1 ATTTAATTATTAAT
8063613 ATTT
1 ATTT
8063617 GAGGGTTGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
12 9 0.38
13 2 0.08
14 13 0.54
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
ATTTAATTATTAAT
Found at i:8095877 original size:53 final size:53
Alignment explanation
Indices: 8095820--8095926 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
8095810 AATTAAGCCC
8095820 TACCTGCAATTAAAGATAGGATTAAGATCTACACTTCAAAATTGGAGTAAGAA
1 TACCTGCAATTAAAGATAGGATTAAGATCTACACTTCAAAATTGGAGTAAGAA
8095873 TACCTGCAATTAAAGATAGGATTAAGATCTACACTTCAAAATTGGAGTAAGAA
1 TACCTGCAATTAAAGATAGGATTAAGATCTACACTTCAAAATTGGAGTAAGAA
8095926 T
1 T
8095927 TTTTCTTTTG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.43, C:0.13, G:0.17, T:0.27
Consensus pattern (53 bp):
TACCTGCAATTAAAGATAGGATTAAGATCTACACTTCAAAATTGGAGTAAGAA
Found at i:8095924 original size:25 final size:25
Alignment explanation
Indices: 8095842--8095924 Score: 87
Period size: 25 Copynumber: 3.2 Consensus size: 25
8095832 AAGATAGGAT
8095842 TAAGATCTACACTTCAAAATTGGAG
1 TAAGATCTACACTTCAAAATTGGAG
* * * *
8095867 TAAGAATACCTGCAATT-AAAGATAGGAT
1 TAAG-AT--CTACACTTCAAA-ATTGGAG
8095895 TAAGATCTACACTTCAAAATTGGAG
1 TAAGATCTACACTTCAAAATTGGAG
8095920 TAAGA
1 TAAGA
8095925 ATTTTTCTTT
Statistics
Matches: 45, Mismatches: 8, Indels: 10
0.71 0.13 0.16
Matches are distributed among these distances:
25 20 0.44
26 5 0.11
27 5 0.11
28 15 0.33
ACGTcount: A:0.43, C:0.13, G:0.17, T:0.27
Consensus pattern (25 bp):
TAAGATCTACACTTCAAAATTGGAG
Found at i:8106275 original size:14 final size:14
Alignment explanation
Indices: 8106256--8106284 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
8106246 AGCGAAGGGG
8106256 AAAAAAAAAGAAAA
1 AAAAAAAAAGAAAA
8106270 AAAAAAAAAGAAAA
1 AAAAAAAAAGAAAA
8106284 A
1 A
8106285 TGCGGTGGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAGAAAA
Found at i:8106369 original size:2 final size:2
Alignment explanation
Indices: 8106362--8106396 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
8106352 GTCGCGGAAC
* *
8106362 GA GA GA GA GA GA AA GA GA GA GA GA GA GA TA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
8106397 GGCTCGTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.51, C:0.00, G:0.46, T:0.03
Consensus pattern (2 bp):
GA
Found at i:8119972 original size:20 final size:20
Alignment explanation
Indices: 8119947--8119984 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8119937 GAAATTGGCA
8119947 AATTGCTAAATTTAGTTTGG
1 AATTGCTAAATTTAGTTTGG
* *
8119967 AATTGCTGATTTTAGTTT
1 AATTGCTAAATTTAGTTT
8119985 AAGTATTTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.05, G:0.18, T:0.50
Consensus pattern (20 bp):
AATTGCTAAATTTAGTTTGG
Found at i:8128007 original size:16 final size:16
Alignment explanation
Indices: 8127986--8128019 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
8127976 TGTCAAAAAG
8127986 AAAGAATAATTTATGA
1 AAAGAATAATTTATGA
8128002 AAAGAATAATTTATGA
1 AAAGAATAATTTATGA
8128018 AA
1 AA
8128020 TTACTCCTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.12, T:0.29
Consensus pattern (16 bp):
AAAGAATAATTTATGA
Done.