Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397254.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_30.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15579451
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 73860 characters in sequence are not A, C, G, or T
File 31 of 32
Found at i:14775356 original size:21 final size:21
Alignment explanation
Indices: 14775331--14775372 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
14775321 TTTGAATAAT
14775331 GGCATCAATCTTTGTCATGAA
1 GGCATCAATCTTTGTCATGAA
**
14775352 GGCATCTGTCTTTGTCATGAA
1 GGCATCAATCTTTGTCATGAA
14775373 TTGCATGAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36
Consensus pattern (21 bp):
GGCATCAATCTTTGTCATGAA
Found at i:14777001 original size:13 final size:13
Alignment explanation
Indices: 14776983--14777009 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14776973 GATAAGTTGA
14776983 ATAATAAAACTAG
1 ATAATAAAACTAG
14776996 ATAATAAAACTAG
1 ATAATAAAACTAG
14777009 A
1 A
14777010 ATATCAAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.07, G:0.07, T:0.22
Consensus pattern (13 bp):
ATAATAAAACTAG
Found at i:14783860 original size:8 final size:8
Alignment explanation
Indices: 14783851--14783885 Score: 52
Period size: 8 Copynumber: 4.2 Consensus size: 8
14783841 TTCTCCCATT
*
14783851 CTTTCTTT
1 CTTTCTTC
14783859 CTTTCTTC
1 CTTTCTTC
14783867 CTTTCTTC
1 CTTTCTTC
14783875 CTTTGCTTC
1 CTTT-CTTC
14783884 CT
1 CT
14783886 AGTCGAATCT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
8 19 0.76
9 6 0.24
ACGTcount: A:0.00, C:0.34, G:0.03, T:0.63
Consensus pattern (8 bp):
CTTTCTTC
Found at i:14785839 original size:141 final size:142
Alignment explanation
Indices: 14785584--14785863 Score: 463
Period size: 141 Copynumber: 2.0 Consensus size: 142
14785574 ATACACATTG
*
14785584 TTTGAAAGTTTTTATGATATTTTCTAATGATACATGGCTTTTCAAACAATTTTTGTGACTTTAAA
1 TTTGAAAGTTTTTATGATATTTTCTAATGATACATGGCTTTTCAAACAATTCTTGTGACTTTAAA
* *
14785649 GGATGAAAAATATGATTGAGATAATTTCAAATGCTTAACATTAAAGTTAAGATATTGTACAATTT
66 GGATGAAAAATATGATTGAGACAATTTCAAATGCTTAACATTAAAGTTAAGATATCGTACAATTT
*
14785714 TTGTCAAATGAT
131 TTATCAAATGAT
* * * * *
14785726 TTTGAAAGTTTTTGTGTTATTTTCTAATGATGCATGGCTTTTCAAATAA-TCTTGTGACTTTAAG
1 TTTGAAAGTTTTTATGATATTTTCTAATGATACATGGCTTTTCAAACAATTCTTGTGACTTTAAA
*
14785790 GGATGAAAAATATGATTGAGACAATTTCAAATGCTTAACATTAAAGTTAAGATATCGTGCAATTT
66 GGATGAAAAATATGATTGAGACAATTTCAAATGCTTAACATTAAAGTTAAGATATCGTACAATTT
14785855 TTATCAAAT
131 TTATCAAAT
14785864 CAAAACATAA
Statistics
Matches: 128, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
141 83 0.65
142 45 0.35
ACGTcount: A:0.35, C:0.09, G:0.15, T:0.41
Consensus pattern (142 bp):
TTTGAAAGTTTTTATGATATTTTCTAATGATACATGGCTTTTCAAACAATTCTTGTGACTTTAAA
GGATGAAAAATATGATTGAGACAATTTCAAATGCTTAACATTAAAGTTAAGATATCGTACAATTT
TTATCAAATGAT
Found at i:14791230 original size:18 final size:18
Alignment explanation
Indices: 14791207--14791242 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
14791197 CCTTATTCAT
*
14791207 AAAAAATTTTAAAAATAA
1 AAAAAATTATAAAAATAA
*
14791225 AAAAAATTATAAATATAA
1 AAAAAATTATAAAAATAA
14791243 TTACTAAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (18 bp):
AAAAAATTATAAAAATAA
Found at i:14795506 original size:17 final size:17
Alignment explanation
Indices: 14795484--14795517 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
14795474 ATCTCCCCAA
*
14795484 TCAAAATTGTCTTGCGT
1 TCAAAATTGTATTGCGT
14795501 TCAAAATTGTATTGCGT
1 TCAAAATTGTATTGCGT
14795518 ACATTCCTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.41
Consensus pattern (17 bp):
TCAAAATTGTATTGCGT
Found at i:14796790 original size:45 final size:44
Alignment explanation
Indices: 14796695--14796790 Score: 104
Period size: 45 Copynumber: 2.1 Consensus size: 44
14796685 GGAATTTATA
* * * **
14796695 TTTTGTTTTGGAGTTTTAAAATTTGGTATTTTTGAAAAATTTTG
1 TTTTGTCTTGGAGCTATAAAATTTGGTATTTTTGAAAAATACTG
*
14796739 TATTTGTCTTGGAGCTATAAAATTTGGTATTTTATAGTAAAATACT-
1 T-TTTGTCTTGGAGCTATAAAATTTGGTATTTT-T-GAAAAATACTG
14796785 TTTTGT
1 TTTTGT
14796791 TACATATAAC
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
44 1 0.02
45 33 0.77
46 2 0.05
47 7 0.16
ACGTcount: A:0.27, C:0.03, G:0.17, T:0.53
Consensus pattern (44 bp):
TTTTGTCTTGGAGCTATAAAATTTGGTATTTTTGAAAAATACTG
Found at i:14799584 original size:12 final size:12
Alignment explanation
Indices: 14799569--14799628 Score: 66
Period size: 12 Copynumber: 4.8 Consensus size: 12
14799559 ATCTTGGTTG
*
14799569 CACACATACATG
1 CACACATACATA
*
14799581 CACACATAACTACA
1 CACACAT-AC-ATA
14799595 CACACATACATA
1 CACACATACATA
*
14799607 CATACATACATA
1 CACACATACATA
*
14799619 CATACATACA
1 CACACATACA
14799629 AGTCAAAACA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
12 30 0.71
13 4 0.10
14 8 0.19
ACGTcount: A:0.48, C:0.32, G:0.02, T:0.18
Consensus pattern (12 bp):
CACACATACATA
Found at i:14799605 original size:4 final size:4
Alignment explanation
Indices: 14799598--14799628 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
14799588 AACTACACAC
14799598 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA
14799629 AGTCAAAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.52, C:0.26, G:0.00, T:0.23
Consensus pattern (4 bp):
ACAT
Found at i:14811643 original size:26 final size:28
Alignment explanation
Indices: 14811609--14811660 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
14811599 TTTATTATTA
*
14811609 TTAGTTTTTG-TGATTTTTTAGTTTAGT
1 TTAGTTTTTGTTAATTTTTTAGTTTAGT
*
14811636 TTAG-TTTTGTTAATTTTTTATTTTA
1 TTAGTTTTTGTTAATTTTTTAGTTTA
14811661 TGCATATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 5 0.23
27 17 0.77
ACGTcount: A:0.17, C:0.00, G:0.13, T:0.69
Consensus pattern (28 bp):
TTAGTTTTTGTTAATTTTTTAGTTTAGT
Found at i:14836313 original size:21 final size:21
Alignment explanation
Indices: 14836287--14836339 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
14836277 ATCTAACTTC
*
14836287 ACATTTACATTGACACTATTT
1 ACATTTACATCGACACTATTT
14836308 ACATTTACATCGACACTATTT
1 ACATTTACATCGACACTATTT
14836329 ACATTTACATC
1 ACATTTACATC
14836340 ATGCTATAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.34, C:0.23, G:0.04, T:0.40
Consensus pattern (21 bp):
ACATTTACATCGACACTATTT
Found at i:14837781 original size:21 final size:21
Alignment explanation
Indices: 14837755--14837810 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
14837745 AAATGTATCA
14837755 ATACATTATGA-ACACACATTG
1 ATACATT-TGAGACACACATTG
14837776 ATACATTTGAGACACACATTG
1 ATACATTTGAGACACACATTG
14837797 ATACATTTGAGACA
1 ATACATTTGAGACA
14837811 AAATGTAGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 3 0.09
21 31 0.91
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (21 bp):
ATACATTTGAGACACACATTG
Found at i:14842372 original size:21 final size:21
Alignment explanation
Indices: 14842342--14842389 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
14842332 TAGCACAAAC
* * *
14842342 TAATGAATACATGGCCAAGAA
1 TAATGCATACATGACAAAGAA
*
14842363 TAATGCATACATGATAAAGAA
1 TAATGCATACATGACAAAGAA
14842384 TAATGC
1 TAATGC
14842390 CATCATTCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.48, C:0.12, G:0.17, T:0.23
Consensus pattern (21 bp):
TAATGCATACATGACAAAGAA
Found at i:14843402 original size:35 final size:35
Alignment explanation
Indices: 14843345--14843413 Score: 111
Period size: 35 Copynumber: 2.0 Consensus size: 35
14843335 ATTGAGTTAG
*
14843345 GCTTACCCCAAAGCCATTATAAAGTTAATCTCCAA
1 GCTTACCCCAAAGCCATCATAAAGTTAATCTCCAA
* *
14843380 GCTTACCCCGAATCCATCATAAAGTTAATCTCCA
1 GCTTACCCCAAAGCCATCATAAAGTTAATCTCCA
14843414 TAGGCATCAC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.35, C:0.30, G:0.09, T:0.26
Consensus pattern (35 bp):
GCTTACCCCAAAGCCATCATAAAGTTAATCTCCAA
Found at i:14845999 original size:28 final size:28
Alignment explanation
Indices: 14845968--14846084 Score: 164
Period size: 28 Copynumber: 4.1 Consensus size: 28
14845958 TGATCCCATA
*
14845968 AAAACCATGGGTTTGTGGTGAAC-CTGTT
1 AAAACCATGAGTTTGTGGTGAACTC-GTT
* *
14845996 AAAACCATGGGTTTATGGTGAACTCGTT
1 AAAACCATGAGTTTGTGGTGAACTCGTT
*
14846024 AAAACCACGAGTTTGTGGTGAACTCGTT
1 AAAACCATGAGTTTGTGGTGAACTCGTT
*
14846052 AAAACCATGAGTTTGTGGTTGAACTTGTT
1 AAAACCATGAGTTTGTGG-TGAACTCGTT
14846081 AAAA
1 AAAA
14846085 GTCATTAAAA
Statistics
Matches: 81, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
28 67 0.83
29 14 0.17
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.32
Consensus pattern (28 bp):
AAAACCATGAGTTTGTGGTGAACTCGTT
Found at i:14846016 original size:56 final size:56
Alignment explanation
Indices: 14845949--14846075 Score: 157
Period size: 56 Copynumber: 2.2 Consensus size: 56
14845939 AGTTAGTATA
* * *
14845949 GGTTTATGGTGATCCCATAAAAACCATGGGTTTGTGGTGAAC-CTGTTAAAACCATG
1 GGTTTATGGTGAACCCATAAAAACCACGAGTTTGTGGTGAACTC-GTTAAAACCATG
* * *
14846005 GGTTTATGGTGAACTCGTTAAAACCACGAGTTTGTGGTGAACTCGTTAAAACCATG
1 GGTTTATGGTGAACCCATAAAAACCACGAGTTTGTGGTGAACTCGTTAAAACCATG
* *
14846061 AGTTTGTGGTTGAAC
1 GGTTTATGG-TGAAC
14846076 TTGTTAAAAG
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
56 55 0.90
57 6 0.10
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (56 bp):
GGTTTATGGTGAACCCATAAAAACCACGAGTTTGTGGTGAACTCGTTAAAACCATG
Found at i:14852344 original size:10 final size:10
Alignment explanation
Indices: 14852331--14852358 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
14852321 TATTAGCATG
14852331 TATATATGTA
1 TATATATGTA
14852341 TATATATGTA
1 TATATATGTA
14852351 TATATATG
1 TATATATG
14852359 ATTACCTAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (10 bp):
TATATATGTA
Found at i:14862780 original size:2 final size:2
Alignment explanation
Indices: 14862773--14862798 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14862763 CCTAAAGTCT
14862773 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
14862799 GTGCAAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14878494 original size:41 final size:43
Alignment explanation
Indices: 14878442--14878543 Score: 163
Period size: 41 Copynumber: 2.4 Consensus size: 43
14878432 CCACCCACTT
*
14878442 TTCCCTCCAAAGTTTTTAATTCAAAGTATT-CCCCCCAAAAGA
1 TTCCCTCCAAAGTTTTCAATTCAAAGTATTCCCCCCCAAAAGA
14878484 -TCCCTCCAAAGTTTTCAATTCAAAGTATTCCCCCCCAAAAGA
1 TTCCCTCCAAAGTTTTCAATTCAAAGTATTCCCCCCCAAAAGA
14878526 TTTCCTCTCCAAAGTTTT
1 -TTCC-CTCCAAAGTTTT
14878544 GGAAGGTTCT
Statistics
Matches: 55, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
41 28 0.51
42 12 0.22
44 3 0.05
45 12 0.22
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.32
Consensus pattern (43 bp):
TTCCCTCCAAAGTTTTCAATTCAAAGTATTCCCCCCCAAAAGA
Found at i:14878687 original size:39 final size:39
Alignment explanation
Indices: 14878638--14878762 Score: 232
Period size: 39 Copynumber: 3.2 Consensus size: 39
14878628 CCTGGTGTGA
*
14878638 CTGGACTGGGCTGGCACCCTCTTGGGCCTCCAAGTGGGT
1 CTGGACTGGGCTGGCACCCTCTTGGGCCTCCAGGTGGGT
14878677 CTGGACTGGGCTGGCACCCTCTTGGGCCTCCAGGTGGGT
1 CTGGACTGGGCTGGCACCCTCTTGGGCCTCCAGGTGGGT
*
14878716 CTGGACTGGGCTGGCACCCTCTTGGGCCTCCTGGTGGGT
1 CTGGACTGGGCTGGCACCCTCTTGGGCCTCCAGGTGGGT
14878755 CTGGACTG
1 CTGGACTG
14878763 TGGCCCGTGA
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 84 1.00
ACGTcount: A:0.08, C:0.30, G:0.38, T:0.24
Consensus pattern (39 bp):
CTGGACTGGGCTGGCACCCTCTTGGGCCTCCAGGTGGGT
Found at i:14881375 original size:42 final size:43
Alignment explanation
Indices: 14881328--14881429 Score: 172
Period size: 43 Copynumber: 2.4 Consensus size: 43
14881318 CCCACCCACT
14881328 TTTCCCTCCAAAGTTTTTAATTCAAAGTATT-CCCCCAAAAGA
1 TTTCCCTCCAAAGTTTTTAATTCAAAGTATTCCCCCCAAAAGA
*
14881370 TTTCCCTCCAAAG-TTTTCATTCAAAGTATTCCCCCCCAAAAGA
1 TTTCCCTCCAAAGTTTTTAATTCAAAGTATT-CCCCCCAAAAGA
14881413 TTTCCCTCCAAAGTTTT
1 TTTCCCTCCAAAGTTTT
14881430 GGAAGGTTCT
Statistics
Matches: 56, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
41 16 0.29
42 13 0.23
43 24 0.43
44 3 0.05
ACGTcount: A:0.29, C:0.29, G:0.07, T:0.34
Consensus pattern (43 bp):
TTTCCCTCCAAAGTTTTTAATTCAAAGTATTCCCCCCAAAAGA
Found at i:14881423 original size:15 final size:15
Alignment explanation
Indices: 14881357--14881424 Score: 54
Period size: 15 Copynumber: 4.7 Consensus size: 15
14881347 ATTCAAAGTA
14881357 TTCCC-CCAAAAGAT
1 TTCCCTCCAAAAGAT
14881371 TTCCCTCC-AAAG-T
1 TTCCCTCCAAAAGAT
* * *
14881384 TTTCATTC-AAAGTAT
1 TTCCCTCCAAAAG-AT
* *
14881399 TCCCCCCCAAAAGAT
1 TTCCCTCCAAAAGAT
14881414 TTCCCTCCAAA
1 TTCCCTCCAAA
14881425 GTTTTGGAAG
Statistics
Matches: 40, Mismatches: 10, Indels: 7
0.70 0.18 0.12
Matches are distributed among these distances:
13 10 0.25
14 9 0.22
15 17 0.43
16 4 0.10
ACGTcount: A:0.31, C:0.35, G:0.06, T:0.28
Consensus pattern (15 bp):
TTCCCTCCAAAAGAT
Found at i:14881637 original size:39 final size:39
Alignment explanation
Indices: 14881524--14881646 Score: 198
Period size: 38 Copynumber: 3.2 Consensus size: 39
14881514 CCTGGTGTGA
*
14881524 CTGGACTGGGCTGGCACCCTCTTGGGCCTCCAAGT-GGT
1 CTGGACTGGGCTGGCACCCTCTTGGGCCTCCAGGTGGGT
14881562 CTGGACTGGGCTGGCA-CCTCTTGGGCCTCCAGGTGGGT
1 CTGGACTGGGCTGGCACCCTCTTGGGCCTCCAGGTGGGT
*
14881600 CTGGACTGGGCTGGCACCCTCTTGGGCCTCCTGGTGGGT
1 CTGGACTGGGCTGGCACCCTCTTGGGCCTCCAGGTGGGT
14881639 -TCGGACTG
1 CT-GGACTG
14881647 TGGCCCGTGA
Statistics
Matches: 80, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
37 17 0.21
38 36 0.45
39 27 0.34
ACGTcount: A:0.08, C:0.30, G:0.37, T:0.24
Consensus pattern (39 bp):
CTGGACTGGGCTGGCACCCTCTTGGGCCTCCAGGTGGGT
Found at i:14883427 original size:20 final size:20
Alignment explanation
Indices: 14883402--14883447 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
14883392 TATTGAATTT
*
14883402 TGAAAATATAA-AAAAAAATA
1 TGAAAAT-TAAGAAAAAAACA
*
14883422 TGAAAATTAAGAAAATAACA
1 TGAAAATTAAGAAAAAAACA
14883442 TGAAAA
1 TGAAAA
14883448 AAGGAGCTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 3 0.13
20 20 0.87
ACGTcount: A:0.70, C:0.02, G:0.09, T:0.20
Consensus pattern (20 bp):
TGAAAATTAAGAAAAAAACA
Found at i:14883950 original size:5 final size:6
Alignment explanation
Indices: 14883935--14883959 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
14883925 GTGAGTTTCC
14883935 TTTTTA TTTTTA TTTTTA TTTTTA T
1 TTTTTA TTTTTA TTTTTA TTTTTA T
14883960 GAATATGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:14903740 original size:17 final size:17
Alignment explanation
Indices: 14903708--14903741 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14903698 GTTCATAGGG
* *
14903708 CACATATTTAGGGGGAA
1 CACATATTCAGAGGGAA
14903725 CACATATTCAGAGGGAA
1 CACATATTCAGAGGGAA
14903742 AAATCCCTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.38, C:0.15, G:0.26, T:0.21
Consensus pattern (17 bp):
CACATATTCAGAGGGAA
Found at i:14906520 original size:39 final size:38
Alignment explanation
Indices: 14906439--14906602 Score: 147
Period size: 39 Copynumber: 4.3 Consensus size: 38
14906429 CAACACAAGT
* * *
14906439 TCAACCACAACCTTTACAAGAA--ACTGCCTTTCAAGGA
1 TCAAGCACAACCTCTACAA-AATCACTGCCTTTTAAGGA
** *
14906476 TCAAGCACAAGGTCTACAAAAGTCACTGCCTTTTTAGGA
1 TCAAGCACAACCTCTACAAAA-TCACTGCCTTTTAAGGA
* * *
14906515 ACAAGCATAACCTTTAC--AATCAACTGCCTTTTAAGGA
1 TCAAGCACAACCTCTACAAAATC-ACTGCCTTTTAAGGA
* * * *
14906552 TCAAGCACAACCACTACAAAACTCACTACTTTTTTAGGA
1 TCAAGCACAACCTCTACAAAA-TCACTGCCTTTTAAGGA
14906591 TCAAGCACAACC
1 TCAAGCACAACC
14906603 ATTGTAGCCA
Statistics
Matches: 101, Mismatches: 19, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
36 4 0.04
37 44 0.44
39 51 0.50
40 2 0.02
ACGTcount: A:0.37, C:0.27, G:0.12, T:0.24
Consensus pattern (38 bp):
TCAAGCACAACCTCTACAAAATCACTGCCTTTTAAGGA
Found at i:14906615 original size:76 final size:76
Alignment explanation
Indices: 14906444--14906638 Score: 219
Period size: 76 Copynumber: 2.6 Consensus size: 76
14906434 CAAGTTCAAC
* ** * *** * *
14906444 CACAACCTTTACAAGAAACTGCCTTTCAAGGATCAAGCACAAGGTCTACAAAAGTCACTGCCTTT
1 CACAACCATTACAACCAACTGCCTTTTAAGGATCAAGCACAACCACTACAAAACTCACTACCTTT
14906509 TTAGGAACAAG
66 TTAGGAACAAG
* * * *
14906520 CATAACCTTTACAATCAACTGCCTTTTAAGGATCAAGCACAACCACTACAAAACTCACTACTTTT
1 CACAACCATTACAACCAACTGCCTTTTAAGGATCAAGCACAACCACTACAAAACTCACTACCTTT
*
14906585 TTAGGATCAAG
66 TTAGGAACAAG
** * * *
14906596 CACAACCATTGTAGCCAACTGCCTTTTAACGATCAAACACAAC
1 CACAACCATTACAACCAACTGCCTTTTAAGGATCAAGCACAAC
14906639 TTCTCTACCT
Statistics
Matches: 100, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
76 100 1.00
ACGTcount: A:0.37, C:0.27, G:0.12, T:0.24
Consensus pattern (76 bp):
CACAACCATTACAACCAACTGCCTTTTAAGGATCAAGCACAACCACTACAAAACTCACTACCTTT
TTAGGAACAAG
Found at i:14912040 original size:19 final size:19
Alignment explanation
Indices: 14912016--14912059 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
14912006 AAACATGTGC
14912016 ATAATAATGTCCATTTGGG
1 ATAATAATGTCCATTTGGG
14912035 ATAATAATGTCCATTTGGG
1 ATAATAATGTCCATTTGGG
14912054 ATAATA
1 ATAATA
14912060 CACATTTGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.36
Consensus pattern (19 bp):
ATAATAATGTCCATTTGGG
Found at i:14912057 original size:16 final size:16
Alignment explanation
Indices: 14912019--14912074 Score: 60
Period size: 16 Copynumber: 3.3 Consensus size: 16
14912009 CATGTGCATA
14912019 ATAATGTCCATTTGGG
1 ATAATGTCCATTTGGG
14912035 ATAATAATGTCCATTTGGG
1 ---ATAATGTCCATTTGGG
*
14912054 ATAAT-ACACATTTGGG
1 ATAATGTC-CATTTGGG
14912070 ATAAT
1 ATAAT
14912075 CCTTTTTTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
15 1 0.03
16 18 0.51
19 16 0.46
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.36
Consensus pattern (16 bp):
ATAATGTCCATTTGGG
Found at i:14929058 original size:23 final size:23
Alignment explanation
Indices: 14929026--14929070 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
14929016 ACTATTGGAT
*
14929026 TATGATTGGATGTTTTTAATTATA
1 TATGATTGGATGCTTTT-ATTATA
14929050 TATG-TTGGATGCTTTTATTAT
1 TATGATTGGATGCTTTTATTAT
14929071 GTAGCATGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 5 0.25
23 11 0.55
24 4 0.20
ACGTcount: A:0.24, C:0.02, G:0.18, T:0.56
Consensus pattern (23 bp):
TATGATTGGATGCTTTTATTATA
Found at i:14942969 original size:20 final size:19
Alignment explanation
Indices: 14942928--14942972 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
14942918 TATTGAATTT
*
14942928 TGAAAATATAAAAAAAATA
1 TGAAAATATAAAAAAAACA
14942947 TGAAAAT-TAAGAAAATAACA
1 TGAAAATATAA-AAAA-AACA
14942967 TGAAAA
1 TGAAAA
14942973 AAGGAGCTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 3 0.13
19 11 0.48
20 9 0.39
ACGTcount: A:0.69, C:0.02, G:0.09, T:0.20
Consensus pattern (19 bp):
TGAAAATATAAAAAAAACA
Found at i:14952188 original size:512 final size:492
Alignment explanation
Indices: 14951151--14953758 Score: 1532
Period size: 512 Copynumber: 5.2 Consensus size: 492
14951141 TTACCTTAGA
* * * * * * * *
14951151 TAAAATTAGATTTTTTTTATTTAGTTGACTTGTTAAATTAACTCTCACACATTCACATTAAGACT
1 TAAAATTAGAATTTTGTGACTTAATTGACTTGTT-ACTTAA-TCTCACACATTGACATTAAGAAT
* * * * * * * * *
14951216 TTAAATTGGCTTGTTCAACCTTTATAAGTTTTTACATTAGTTTTTACAAGC-TTACATCAATACA
64 TTAAATTTGCTTATTCCACATTTATAA-TTTTTACGTCAATTCTTAC-AGCTTTACGT--ATA-A
* * * * * * *
14951280 -TTTCGA-GGGAAAGTTCTAATTATAATTATTCTTAACCTT-ATTATTCTTTATTTTAAAATTAA
124 TTTTCAATGGTAAACTTTTAATTATAATTATT-TTTATCTTGATTATTCTTTATTTT-AAACTAA
* * * * * *
14951342 AATTTATATACCGTTAAATACTTTTAG-TCGGGAAATATGAATTTAAA--TTT-TTTTTCATGAC
187 AATTTGTATATCGTTAAATACTTTTAGCTCGAG-AATATAAATTTAAATGTTTATTTTTCATTAA
* * * * * ** *
14951403 AATTAGATTGTTTTTACTTAATT-AACATGTTACATTAACTCTCTCACATTTATGCTAGGATTTT
251 AATTAGATTTTTTTTATTTAATTGAA-TTGTTA-ACTAACT-T-TAACATTTATATTAAGATTTT
* * * * * * * *
14951467 AAATTTGCATGTTCTAAC-ATTATTAGTTTTTACG-CTAATTCTTACAACTTTATGTTTAAGGGT
312 AAATTTACTTATTC-CACTTTTATAAGTTTTTACGTC-AATTCTTACAAC-TT-TG-TCAAGGCT
* * * * * * *
14951530 TTTCCAT-GTAATTTTTACCAATATTTATTTTTATCTTTATTATTCTTTATTTTAAAATTAAAAT
372 TTTCAATGGTAACTTTTAACTATAATCATTTTTATCCTTATTATTC-TTATTTTAAAATTAAAAT
* * **
14951594 TTGTATACTGTTTAATACTTTTAGCAT-GAGAATATAAATTTAAATGCTTGTTTTTCAT
436 TTGTATA-TGATTAATACTTTTAGC-TCAAGAATATAAATTTAAATTTTTGTTTTTCAT
* *
14951652 TGAAATTAGAATTGTGTGACTTAATTGACTTGTTATCTTAAGTCTCACACATTGACATTAAGAAT
1 TAAAATTAGAATTTTGTGACTTAATTGACTTGTTA-CTTAA-TCTCACACATTGACATTAAGAAT
* * ** *
14951717 TTACATTTGCTTATTCCACCTTTATACATTTTTATATCAATTCTTACAGCTTTGCGTCATAACTT
64 TTAAATTTGCTTATTCCACATTTATA-ATTTTTACGTCAATTCTTACAGCTTTACGT-ATAA-TT
14951782 TTCAATGGTAACTACTTTTAATTATAATTATTTTTATCTTGATTATTCTTTATTTTAAAGCTAAA
126 TTCAATGGTAA--ACTTTTAATTATAATTATTTTTATCTTGATTATTCTTTATTTTAAA-CTAAA
* * *
14951847 ATTTGTATAAT-GTTAAATACTTTTAGCTCGAGAATATAAATTTAAATGTTTCTTTTTGATAAAA
188 ATTTGTAT-ATCGTTAAATACTTTTAGCTCGAGAATATAAATTTAAATGTTTATTTTTCATTAAA
* * * * *
14951911 ATTTGAAATTCTTTTTTTATATATAATTGACTTGTTCCACTAACTATTATACTTTTATGTTAAGA
252 A-TT-AGA-T-TTTTTTTAT-T-TAATTGAATTGTT-AACTAACT-TTA-ACATTTATATTAAGA
* * * *
14951976 TTTTAAATTTACTTGTTGCACTTTTATAAGTTTTTACCTCAATTCTTCCAACTTTGCATCAAGGC
308 TTTTAAATTTACTTATTCCACTTTTATAAGTTTTTACGTCAATTCTTACAACTTTG--TCAAGGC
* * *
14952041 TTTTCAATGGAAACTTTTGACTATAATCATTTTTATCCTTATTATTCTTATTTTAAAATTAAATT
371 TTTTCAATGGTAACTTTTAACTATAATCATTTTTATCCTTATTATTCTTATTTTAAAATTAAAAT
** * *
14952106 TTGTATATCCTTAGATACTTTTTGCTCAAGAATATAAATATAAATTTTTGTTTTTCAT
436 TTGTATATGATTA-ATACTTTTAGCTCAAGAATATAAATTTAAATTTTTGTTTTTCAT
* * * * * ** * *
14952164 TTAAATTAGTATTTTGTTACTTAATTGACTTAG-TACCTCAACTCTCACACATTTATGTGAAGAT
1 TAAAATTAGAATTTTGTGACTTAATTGACTT-GTTA-CTTAA-TCTCACACATTGACATTAAGAA
* * * * *
14952228 TTTAAATTTG-TTGGTTTCATATTTATATGTTTTTACGTCAATTCTTACAGTTTTACG--TAA--
63 TTTAAATTTGCTT-ATTCCACATTTATA-ATTTTTACGTCAATTCTTACAGCTTTACGTATAATT
* * *
14952288 -T-AA----AAACTTATAATTATAATTATTTTTATCCTT-ATTATTCTATATTTTAAAACTGAAA
126 TTCAATGGTAAACTTTTAATTATAATTATTTTTAT-CTTGATTATTCTTTATTTT-AAACTAAAA
** * * * * *
14952346 TTTGTATATCGTTAAATACTTTTATTTCGAGAAAATACATCTAAATGTTTGTTTTTTATTAAAAT
189 TTTGTATATCGTTAAATACTTTTAGCTCGAGAATATAAATTTAAATGTTTATTTTTCATTAAAAT
* * * * * * *
14952411 TAGA-TTTTTTTACTTAATTGATTTGTTTAGTCAGCCTTCACACATTAATATTAAGATTTTAAAT
254 TAGATTTTTTTTATTTAATTGAATTGTTAACT-A-ACTTTA-ACATTTATATTAAGATTTTAAAT
* * * * *
14952475 TTACTTTTTTCACTTTTATAAGTTTATATGTCAATTCTTACAGA-TTTAGGTCAAGGCTTTTTAA
316 TTACTTATTCCACTTTTATAAGTTTTTACGTCAATTCTTACA-ACTTT--GTCAAGGCTTTTCAA
* * * *
14952539 TAGTAACCTTTAACTATAATTATTTTTATCCTTATTATTC----TTTAAAATTAAAATTTGTTTA
378 TGGTAACTTTTAACTATAATCATTTTTATCCTTATTATTCTTATTTTAAAATTAAAATTTGTATA
* * * *
14952600 TGATTAAATACTTTTAGCCCCGAA-AGTATAAATTTAAATGTTAT-TTTGTCAT
443 TGATT-AATACTTTTAG-CTC-AAGAATATAAATTTAAAT-TTTTGTTTTTCAT
* * ** * *
14952652 TAAAATTAAAATATTACGACTTAATTAATTTGTTACATTAA-CTCACACATTGACATTAA-AATT
1 TAAAATTAGAATTTTGTGACTTAATTGACTTGTTAC-TTAATCTCACACATTGACATTAAGAA-T
* * * * * ** *
14952715 TTAAAATTTGCTTATGCCACTTTTATAAGTTTTTACGTCAACTATTATAGCTTTTTGTGA-AGGT
64 TT-AAATTTGCTTATTCCACATTTATAA-TTTTTACGTCAATTCTTACAGCTTTACGT-ATA--A
* * * * * *
14952779 TTTTCAATGGT-AACTTTTAAATATAATTATTTTCATC-CGTATTATTTTTTATTTCAAA-TTAA
124 TTTTCAATGGTAAACTTTTAATTATAATTATTTTTATCTTG-ATTATTCTTTATTTTAAACTAAA
* * * * *
14952841 ATTTGTATATCGTTAAATACTTATAGCCCGAGATTATAAATTTAAGTGTTTATTTTTCTTTAAAA
188 ATTTGTATATCGTTAAATACTTTTAGCTCGAGAATATAAATTTAAATGTTTATTTTTCATTAAAA
* * * *
14952906 TTAGATTTTTTTTATTTAATTGAATTGTTAAGTTAACTTTCAATCATTTACATTAGGCTTTTAAA
253 TTAGATTTTTTTTATTTAATTGAATTGTTAA-CTAACTTT-AA-CATTTATATTAAGATTTTAAA
* * * * ** *
14952971 TTTGCTTATTCCACCTTTAAAACTTTTTTGGTCAATTATTACAACATTATGTCAAGGCTTTTCAA
315 TTTACTTATTCCACTTTTATAAGTTTTTACGTCAATTCTTACAAC-TT-TGTCAAGGCTTTTCAA
* * *
14953036 TGGTAACTTTTAACTATAA-CTATTTTTATTCTTATTATTTTTATTTTAAAATTAAAATTTATAT
378 TGGTAACTTTTAACTATAATC-ATTTTTATCCTTATTATTCTTATTTTAAAATTAAAATTTGTAT
* * * * * *
14953100 ATTG-TTAAATA-TCTTTACCTCGAGAATATAAATTTAAATGCTTT-CTTGT-AG
442 A-TGATT-AATACT-TTTAGCTCAAGAATATAAATTTAAAT-TTTTGTTTTTCAT
* * * * ** * * ** *
14953151 AAAAACTATATATTTT-TTACTTAATAAACTTATTA-TGTAAACTCTCACACATTTATGTTAGGA
1 TAAAATTAGA-ATTTTGTGACTTAATTGACTTGTTACT-T-AA-TCTCACACATTGACATTAAGA
* * * * * * *
14953214 TTTTAAATTTGCTTGTTCCATC-TTTTTGAGTTTTTACTTCAATTCTTATAGTTTTA--TATCAA
62 ATTTAAATTTGCTTATTCCA-CATTTAT-AATTTTTACGTCAATTCTTACAGCTTTACGTAT--A
* * * * * * * *
14953276 GACATTTCAAT-GTAAACTTTTGACTATAATTATCTATATCCTT-ATTTTTCTTTGTTTGCAAAA
123 -A-TTTTCAATGGTAAACTTTTAATTATAATTATTTTTAT-CTTGATTATTCTTTATTT--TAAA
* * ** ** * * * *
14953339 TTAAAATTTTTATATTATTAAATGTTTTTA-CCCTGAGAATATAAATTTAACTATTAATTTTTCA
183 CTAAAATTTGTATATCGTTAAATACTTTTAGCTC-GAGAATATAAATTTAAATGTTTATTTTTCA
* * * *
14953403 TTAAAATCT---TATTTTTTA-TTAATAGAATTG---A-T-A---TAA-ATTTACATTAAAATTT
247 TTAAAAT-TAGATTTTTTTTATTTAATTGAATTGTTAACTAACTTTAACATTTATATTAAGATTT
* * * * ** * *
14953455 T-AATTTTCTTGA-TCCACCTTTT-TAAATTTTTACATCAATTCTTATAGTTTTAAATTAAGGCT
311 TAAATTTACTT-ATTCCA-CTTTTATAAGTTTTTACGTCAATTCTTACAACTTT--GTCAAGGCT
* * * * *
14953517 TTTCAATTGTAACTTTTAACTATAATTATTTTTA-CC-TATTTAATTATTTACTTTAAAATTCAA
372 TTTCAATGGTAACTTTTAACTATAATCATTTTTATCCTTA-TT-ATT-CTTATTTTAAAATTAAA
* * * * *
14953580 ATTTGTATATCATTAAATACTTTTAGC-CTGAGAATATAAATTTAAATGTTTATTTTTTAT
434 ATTTGTATATGATT-AATACTTTTAGCTC-AAGAATATAAATTTAAATTTTTGTTTTTCAT
* * * * * * * * *
14953640 TAAAATTAGATTTTTTTTACTTAGTTTACTTGTTACGTTAACTCTTACACATTTACATTAACATT
1 TAAAATTAGAATTTTGTGACTTAATTGACTTGTTAC-TTAA-TCTCACACATTGACATTAAGAAT
* * * * *
14953705 TTAAATTTACTTGTTTCA-ACTTTATAAGTCTTTA-GCTCAATTTTTACAGCTTTA
64 TTAAATTTGCTTATTCCACA-TTTATAA-TTTTTACG-TCAATTCTTACAGCTTTA
14953759 TATCAAAGGC
Statistics
Matches: 1661, Mismatches: 326, Indels: 252
0.74 0.15 0.11
Matches are distributed among these distances:
485 4 0.00
486 22 0.01
487 146 0.09
488 132 0.08
489 91 0.05
490 5 0.00
491 124 0.07
492 4 0.00
493 9 0.01
494 2 0.00
495 3 0.00
496 68 0.04
497 133 0.08
498 134 0.08
499 36 0.02
500 126 0.08
501 156 0.09
502 14 0.01
503 63 0.04
504 74 0.04
505 6 0.00
506 3 0.00
507 10 0.01
508 2 0.00
509 5 0.00
510 1 0.00
511 16 0.01
512 172 0.10
513 98 0.06
514 2 0.00
ACGTcount: A:0.32, C:0.12, G:0.08, T:0.48
Consensus pattern (492 bp):
TAAAATTAGAATTTTGTGACTTAATTGACTTGTTACTTAATCTCACACATTGACATTAAGAATTT
AAATTTGCTTATTCCACATTTATAATTTTTACGTCAATTCTTACAGCTTTACGTATAATTTTCAA
TGGTAAACTTTTAATTATAATTATTTTTATCTTGATTATTCTTTATTTTAAACTAAAATTTGTAT
ATCGTTAAATACTTTTAGCTCGAGAATATAAATTTAAATGTTTATTTTTCATTAAAATTAGATTT
TTTTTATTTAATTGAATTGTTAACTAACTTTAACATTTATATTAAGATTTTAAATTTACTTATTC
CACTTTTATAAGTTTTTACGTCAATTCTTACAACTTTGTCAAGGCTTTTCAATGGTAACTTTTAA
CTATAATCATTTTTATCCTTATTATTCTTATTTTAAAATTAAAATTTGTATATGATTAATACTTT
TAGCTCAAGAATATAAATTTAAATTTTTGTTTTTCAT
Found at i:14952229 original size:251 final size:250
Alignment explanation
Indices: 14951151--14953810 Score: 1804
Period size: 250 Copynumber: 10.7 Consensus size: 250
14951141 TTACCTTAGA
* * ** * *
14951151 TAAAATTAG-ATTTTTTTTATTTAGTTGACTTGTTAAATTAACTCTCACACATTCACATTAAGAC
1 TAAAATTAGTA-TTTTTTTACTTAATTGACTTGTTACGTTAACTCTCACACATTTACATTAAGAT
* * * * * * * ** ** *
14951215 TTTAAATTGGCTTGTTCAACCTTTATAAGTTTTTACATTAGTTTTTACAAGCTTACATCAATACA
65 TTTAAATTTGCTTGTTCCACTTTTATAAGTTTTTACGTCAATTCTTAC-AGCTTTGATCAAGGCT
* * * * * * *
14951280 TTTCGAGGGAAAGTTCTAATTATAATTATTCTTAACCTTATTATTCTTTATTTTAAAATTAAAAT
129 TTTCAATGGAAACTTTTAACTATAATTATTTTTATCCTTATTATTC-TTATTTTAAAATTAAAAT
* * * *
14951345 TTATATACCGTTAAATACTTTTAG-TCGGGAAATATGAATTTAAA--TTT-TTTTTCAT
193 TTGTATATCGTTAAATACTTTTAGCTCGAG-AATATAAATTTAAATGTTTATTTTTCAT
* * * * * * *** *
14951400 GACAATTAG-ATTGTTTTTACTTAATTAACATGTTACATTAACTCTCTCACATTTATGCTAGGAT
1 TAAAATTAGTATT-TTTTTACTTAATTGACTTGTTACGTTAACTCTCACACATTTACATTAAGAT
* * * * * * *
14951464 TTTAAATTTGCATGTTCTAAC-ATTATTAGTTTTTACG-CTAATTCTTACAACTTTATGTTTAAG
65 TTTAAATTTGCTTGTTC-CACTTTTATAAGTTTTTACGTC-AATTCTTACAGC-TT-TGATCAAG
* * * * * * * *
14951527 GGTTTTCCAT-GTAATTTTTACCAATATTTATTTTTATCTTTATTATTCTTTATTTTAAAATTAA
126 GCTTTTCAATGGAAACTTTTAACTATAATTATTTTTATCCTTATTATTC-TTATTTTAAAATTAA
* * *
14951591 AATTTGTATA-CTGTTTAATACTTTTAGCAT-GAGAATATAAATTTAAATGCTTGTTTTTCAT
190 AATTTGTATATC-GTTAAATACTTTTAGC-TCGAGAATATAAATTTAAATGTTTATTTTTCAT
* * * * * * * *
14951652 TGAAATTAGAATTGTGTGACTTAATTGACTTGTTATC-TTAAGTCTCACACATTGACATTAAGAA
1 TAAAATTAGTATTTTTTTACTTAATTGACTTGTTA-CGTTAACTCTCACACATTTACATTAAGAT
* * * ** * *
14951716 TTTACATTTGCTTATTCCACCTTTATACA-TTTTTATATCAATTCTTACAGCTTTGCGTCATA-A
65 TTTAAATTTGCTTGTTCCACTTTTATA-AGTTTTTACGTCAATTCTTACAGCTTTG-ATCA-AGG
* **
14951779 CTTTTCAATGGTAACTACTTTTAATTATAATTATTTTTAT-CTTGATTATTCTTTATTTTAAAGC
127 CTTTTCAATGG-AA--ACTTTTAACTATAATTATTTTTATCCTT-ATTATTC-TTATTTTAAAAT
* *
14951843 TAAAATTTGTATAAT-GTTAAATACTTTTAGCTCGAGAATATAAATTTAAATGTTTCTTTTTGAT
187 TAAAATTTGTAT-ATCGTTAAATACTTTTAGCTCGAGAATATAAATTTAAATGTTTATTTTTCAT
* * * * * ** * * * * **
14951907 AAAAATTTGAAATTCTTTTTTTATATATAATTGACTTGTTCCACTAACTATTATACTTTTATGTT
1 TAAAA-TT---AGTATTTTTTTA-CT-TAATTGACTTGTTACGTTAACTCTCACACATTTACATT
* * * * *
14951972 AAGATTTTAAATTTACTTGTTGCACTTTTATAAGTTTTTACCTCAATTCTTCCAACTTTGCATCA
60 AAGATTTTAAATTTGCTTGTTCCACTTTTATAAGTTTTTACGTCAATTCTTACAGCTTTG-ATCA
* *
14952037 AGGCTTTTCAATGGAAACTTTTGACTATAATCATTTTTATCCTTATTATTCTTATTTTAAAATTA
124 AGGCTTTTCAATGGAAACTTTTAACTATAATTATTTTTATCCTTATTATTCTTATTTTAAAATTA
* * * * * * * *
14952102 AATTTTGTATATCCTTAGATACTTTTTGCTCAAGAATATAAATATAAATTTTTGTTTTTCAT
189 AAATTTGTATATCGTTAAATACTTTTAGCTCGAGAATATAAATTTAAATGTTTATTTTTCAT
* * * * ** *
14952164 TTAAATTAGTATTTTGTTACTTAATTGACTTAG-TACCTCAACTCTCACACATTTATGTGAAGAT
1 TAAAATTAGTATTTTTTTACTTAATTGACTT-GTTACGTTAACTCTCACACATTTACATTAAGAT
* *
14952228 TTTAAATTTG-TTGGTTTCA-TATTTATATGTTTTTACGTCAATTCTTACAG-TTT--T--A--C
65 TTTAAATTTGCTT-GTTCCACT-TTTATAAGTTTTTACGTCAATTCTTACAGCTTTGATCAAGGC
* ** * * * *
14952284 --GT-AATAAAAACTTATAATTATAATTATTTTTATCCTTATTATTCTATATTTTAAAACTGAAA
128 TTTTCAATGGAAACTTTTAACTATAATTATTTTTATCCTTATTATTCT-TATTTTAAAATTAAAA
** * * * * *
14952346 TTTGTATATCGTTAAATACTTTTATTTCGAGAAAATACATCTAAATGTTTGTTTTTTAT
192 TTTGTATATCGTTAAATACTTTTAGCTCGAGAATATAAATTTAAATGTTTATTTTTCAT
* * * * *
14952405 TAAAATTAG-ATTTTTTTACTTAATTGATTTGTTTA-GTCAGC-CTTCACACATTAATATTAAGA
1 TAAAATTAGTATTTTTTTACTTAATTGACTTG-TTACGTTAACTC-TCACACATTTACATTAAGA
* * * * * * *
14952467 TTTTAAATTTACTTTTTTCACTTTTATAAGTTTATATGTCAATTCTTACAGATTTAGGTCAAGGC
64 TTTTAAATTTGCTTGTTCCACTTTTATAAGTTTTTACGTCAATTCTTACAGCTTT-GATCAAGGC
* * * *
14952532 TTTTTAATAGTAACCTTTAACTATAATTATTTTTATCCTTATTATTC----TTTAAAATTAAAAT
128 TTTTCAATGGAAACTTTTAACTATAATTATTTTTATCCTTATTATTCTTATTTTAAAATTAAAAT
* *
14952593 TTGTTTAT-GATTAAATACTTTTAGCCCCGA-AAGTATAAATTTAAATG-TTATTTTGTCAT
193 TTGTATATCG-TTAAATACTTTTAG-CTCGAGAA-TATAAATTTAAATGTTTATTTT-TCAT
** * *** * * * * *
14952652 TAAAATTAAAATATTACGACTTAATTAATTTGTTACATTAA--CTCACACATTGACATTAAAATT
1 TAAAATTAGTATTTTTTTACTTAATTGACTTGTTACGTTAACTCTCACACATTTACATTAAGATT
* * * * * * *
14952715 TTAAAATTTGCTTATGCCACTTTTATAAGTTTTTACGTCAACTATTATAGCTTTTTG-TGAAGGT
66 TT-AAATTTGCTTGTTCCACTTTTATAAGTTTTTACGTCAATTCTTACAGC--TTTGATCAAGGC
* * * * * *
14952779 TTTTCAATGGTAACTTTTAAATATAATTATTTTCATCCGTATTATT-TTTTATTTCAAATT-AAA
128 TTTTCAATGGAAACTTTTAACTATAATTATTTTTATCCTTATTATTCTTAT-TTTAAAATTAAAA
* * * * *
14952842 TTTGTATATCGTTAAATACTTATAGCCCGAGATTATAAATTTAAGTGTTTATTTTTCTT
192 TTTGTATATCGTTAAATACTTTTAGCTCGAGAATATAAATTTAAATGTTTATTTTTCAT
* * * * * *
14952901 TAAAATTAG-ATTTTTTTTATTTAATTGAATTGTTAAGTTAACTTTCA-ATCATTTACATTAGGC
1 TAAAATTAGTA-TTTTTTTACTTAATTGACTTGTTACGTTAACTCTCACA-CATTTACATTAAGA
* * * * ** * *
14952964 TTTTAAATTTGCTTATTCCACCTTTAAAACTTTTTTGGTCAATTATTACAACATTATG-TCAAGG
64 TTTTAAATTTGCTTGTTCCACTTTTATAAGTTTTTACGTCAATTCTTACAGC-TT-TGATCAAGG
* * * *
14953028 CTTTTCAATGGTAACTTTTAACTATAACTATTTTTATTCTTATTATTTTTATTTTAAAATTAAAA
127 CTTTTCAATGGAAACTTTTAACTATAATTATTTTTATCCTTATTATTCTTATTTTAAAATTAAAA
* * * * * *
14953093 TTTATATATTGTTAAATA-TCTTTACCTCGAGAATATAAATTTAAATGCTTT-CTTGT-AG
192 TTTGTATATCGTTAAATACT-TTTAGCTCGAGAATATAAATTTAAATG-TTTATTTTTCAT
* * ** * * * ** *
14953151 AAAAACTA-TATATTTTTTACTTAATAAACTTATTATGTAAACTCTCACACATTTATGTTAGGAT
1 TAAAATTAGTAT-TTTTTTACTTAATTGACTTGTTACGTTAACTCTCACACATTTACATTAAGAT
* * * * * *
14953215 TTTAAATTTGCTTGTTCCATCTTTT-TGAGTTTTTACTTCAATTCTTATAGTTTTATATCAAGAC
65 TTTAAATTTGCTTGTTCCA-CTTTTATAAGTTTTTACGTCAATTCTTACAGCTTT-GATCAAGGC
* * * * * *
14953279 ATTTCAATGTAAACTTTTGACTATAATTATCTATATCCTTATTTTTCTT-TGTTTGCAAAATTAA
128 TTTTCAATGGAAACTTTTAACTATAATTATTTTTATCCTTATTATTCTTAT-TTT--AAAATTAA
* ** ** * * * *
14953343 AATTTTTATATTATTAAATGTTTTTA-CCCTGAGAATATAAATTTAACTATTAATTTTTCAT
190 AATTTGTATATCGTTAAATACTTTTAGCTC-GAGAATATAAATTTAAATGTTTATTTTTCAT
* * *
14953404 TAAAATCT--TA-TTTTTTA-TTAATAGAATTG--A---T-A---T-A-A-ATTTACATTAAAAT
1 TAAAAT-TAGTATTTTTTTACTTAATTGACTTGTTACGTTAACTCTCACACATTTACATTAAGAT
* * * * * * * *
14953453 TTT-AATTTTCTTGATCCACCTTTT-TAAATTTTTACATCAATTCTTATAGTTTTAAATTAAGGC
65 TTTAAATTTGCTTGTTCCA-CTTTTATAAGTTTTTACGTCAATTCTTACAGCTTT-GATCAAGGC
* * * * *
14953516 TTTTCAATTGTAACTTTTAACTATAATTATTTTTA-CC-TATTTAATTATTTACTTTAAAATTCA
128 TTTTCAATGGAAACTTTTAACTATAATTATTTTTATCCTTA-TT-ATT-CTTATTTTAAAATTAA
* *
14953579 AATTTGTATATCATTAAATACTTTTAGC-CTGAGAATATAAATTTAAATGTTTATTTTTTAT
190 AATTTGTATATCGTTAAATACTTTTAGCTC-GAGAATATAAATTTAAATGTTTATTTTTCAT
* * * *
14953640 TAAAATTAG-ATTTTTTTTACTTAGTTTACTTGTTACGTTAACTCTTACACATTTACATTAACAT
1 TAAAATTAGTA-TTTTTTTACTTAATTGACTTGTTACGTTAACTCTCACACATTTACATTAAGAT
* * * * *
14953704 TTTAAATTTACTTGTTTCAAC-TTTATAAGTCTTTA-GCTCAATTTTTACAGCTTTATATCAAAG
65 TTTAAATTTGCTTG-TTCCACTTTTATAAGTTTTTACG-TCAATTCTTACAGCTTT-GATC-AAG
* * * *
14953767 GCCTTTCAATTGCAACTTTTAACTATAATAATTTTTATCCTTAT
126 GCTTTTCAATGGAAACTTTTAACTATAATTATTTTTATCCTTAT
14953811 ACTTAAATAC
Statistics
Matches: 1892, Mismatches: 393, Indels: 247
0.75 0.16 0.10
Matches are distributed among these distances:
235 3 0.00
236 69 0.04
237 82 0.04
238 25 0.01
239 11 0.01
240 118 0.06
241 80 0.04
243 1 0.00
244 3 0.00
245 3 0.00
246 61 0.03
247 113 0.06
248 30 0.02
249 224 0.12
250 289 0.15
251 232 0.12
252 176 0.09
253 64 0.03
254 7 0.00
255 97 0.05
256 7 0.00
257 65 0.03
258 28 0.01
259 9 0.00
260 6 0.00
261 89 0.05
ACGTcount: A:0.32, C:0.12, G:0.08, T:0.48
Consensus pattern (250 bp):
TAAAATTAGTATTTTTTTACTTAATTGACTTGTTACGTTAACTCTCACACATTTACATTAAGATT
TTAAATTTGCTTGTTCCACTTTTATAAGTTTTTACGTCAATTCTTACAGCTTTGATCAAGGCTTT
TCAATGGAAACTTTTAACTATAATTATTTTTATCCTTATTATTCTTATTTTAAAATTAAAATTTG
TATATCGTTAAATACTTTTAGCTCGAGAATATAAATTTAAATGTTTATTTTTCAT
Found at i:14952469 original size:240 final size:240
Alignment explanation
Indices: 14952062--14952522 Score: 569
Period size: 240 Copynumber: 1.9 Consensus size: 240
14952052 AACTTTTGAC
* *
14952062 TATAATCATTTTTATCCTTATTATTCTTATTTTAAAATTAAATTTTGTATATCCTTAGATACTTT
1 TATAATCATTTTTATCCTTATTATTCTTATTTTAAAATGAAATTTTGTATATCCTTAAATACTTT
* * *
14952127 TTGCTCAAGAATATAAATATAAATTTTTGTTTTTCATTTAAATTAGTATTTTGTTACTTAATTGA
66 TTGCTCAAGAAAATAAATATAAATGTTTGTTTTTCATTAAAATTAGTATTTTGTTACTTAATTGA
* * *
14952192 CTTAGTACCTCAACTCTCACACATTTATGTGAAGATTTTAAATTT-GTTGGTTTCA-TATTTATA
131 CTTAGTACCTCAACTCTCACACATTAATATGAAGATTTTAAATTTACTT-GTTTCACT-TTTATA
* * *
14952255 TGTTTTTACGTCAATTCTTACAGTTTTACGTAATAAAAACTTATAAT
194 AGTTTATACGTCAATTCTTACAGATTTACGTAATAAAAACTTATAAT
* *
14952302 TATAATTATTTTTATCCTTATTATTCTATATTTTAAAACTGAAA-TTTGTATATCGTTAAATACT
1 TATAATCATTTTTATCCTTATTATTCT-TATTTTAAAA-TGAAATTTTGTATATCCTTAAATACT
* * * * * *
14952366 TTTAT-TTCGAGAAAATACATCTAAATGTTTGTTTTTTATTAAAATTAG-ATTTTTTTACTTAAT
64 TTT-TGCTCAAGAAAATAAATATAAATGTTTGTTTTTCATTAAAATTAGTATTTTGTTACTTAAT
* * * * *
14952429 TGA-TTTGTTTA-GTCAGC-CTTCACACATTAATATTAAGATTTTAAATTTACTTTTTTCACTTT
128 TGACTTAG--TACCTCAACTC-TCACACATTAATATGAAGATTTTAAATTTACTTGTTTCACTTT
*
14952491 TATAAGTTTATATGTCAATTCTTACAGATTTA
190 TATAAGTTTATACGTCAATTCTTACAGATTTA
14952523 GGTCAAGGCT
Statistics
Matches: 188, Mismatches: 25, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
239 4 0.02
240 108 0.57
241 71 0.38
242 5 0.03
ACGTcount: A:0.32, C:0.11, G:0.08, T:0.50
Consensus pattern (240 bp):
TATAATCATTTTTATCCTTATTATTCTTATTTTAAAATGAAATTTTGTATATCCTTAAATACTTT
TTGCTCAAGAAAATAAATATAAATGTTTGTTTTTCATTAAAATTAGTATTTTGTTACTTAATTGA
CTTAGTACCTCAACTCTCACACATTAATATGAAGATTTTAAATTTACTTGTTTCACTTTTATAAG
TTTATACGTCAATTCTTACAGATTTACGTAATAAAAACTTATAAT
Found at i:14954738 original size:251 final size:250
Alignment explanation
Indices: 14954345--14955730 Score: 1185
Period size: 251 Copynumber: 5.6 Consensus size: 250
14954335 AAATTAAAAT
* * * * * * *
14954345 GATTTTAAATTTACTTGTTCCACCTTTATAAGCTTTTATGTCAATTCTTACAATTTTATGTCAAG
1 GATTTTAAATTTATTTGTTCCACATTTATAAGTTTTTACGTCAATTCTTACAACTTTACGTTAAG
* * * * * *
14954410 GTTTTCAAGGGCAACTTTTAACTATAATTATTCTTATCC-TAATATTTTTTATTTTAAAATTAAA
66 ATTTTCAATGGCAAATTTTAACTATAATTATTTTTATCCTTATTATTCTTTATTTTAAAATTAAA
* * *
14954474 ATTTGTTTATTGTTAATTGCTTTTACGTCGAGAATATAAATTTAAAAGTTTGTTTTTCATTAAAA
131 ATTTGTATATTGTTAAATACTTTTACGTCGAGAATATAAATTTAAAAGTTTGTTTTTCATTAAAA
*
14954539 TTAGATTTTTTTACTTAATTGACCTATTACGTTAACTCTCACACATTTATGTTAA
196 TTAGATTTTTTTACTTAATTGACCTGTTACGTTAACTCTCACACATTTATGTTAA
* * * * *
14954594 GATTTTAAATTTATTTGTTCTACATTTATATGTTTTTACGTCAATTCTTTCAACCTTAGGTTAAG
1 GATTTTAAATTTATTTGTTCCACATTTATAAGTTTTTACGTCAATTCTTACAACTTTACGTTAA-
* * * * * ** *
14954659 GGTTTTCAATGGTAAATATGAATTATAATTATTTTTATAGTTATTATTCTTTATTTTAAAACTAA
65 GATTTTCAATGGCAAATTTTAACTATAATTATTTTTATCCTTATTATTCTTTATTTTAAAATTAA
* * * * *
14954724 AATTTATATATTGTTAAATACTTGTA-GTCTAAGAATATAAATTT-AAA-TTTATTTTTAATTAA
130 AATTTGTATATTGTTAAATACTTTTACGTC-GAGAATATAAATTTAAAAGTTTGTTTTTCATTAA
** * * *
14954786 AATTAGATTTTTTTTTACTTGTTTGACTTGTTCCATTAACTCTCACACATTTATGTTAA
194 AATTAGA--TTTTTTTACTTAATTGACCTGTTACGTTAACTCTCACACATTTATGTTAA
** * * * * * * *
14954845 GATTTTAAATTTGCTTGTTCTACCTTTATAAGTTTTTACATTAATTCTGACAGCTTTACATCT-A
1 GATTTTAAATTTATTTGTTCCACATTTATAAGTTTTTACGTCAATTCTTACAACTTTACGT-TAA
* * * *
14954909 GCATTTTCAATGACAACTTTAAACTATAATTATTTTTATCCTTATTATTGTTTATTTTAAAATTA
65 G-ATTTTCAATGGCAAATTTTAACTATAATTATTTTTATCCTTATTATTCTTTATTTTAAAATTA
* * *
14954974 AAATTTGTATATTGTTAACTACTTTTA-TTCCGAGAATTTAAATTT-AAA-TTT-TTTTTCCA--
129 AAATTTGTATATTGTTAAATACTTTTACGT-CGAGAATATAAATTTAAAAGTTTGTTTTT-CATT
* * * * * * * *** *
14955033 AAAGTTAGACTTTTTTACTTAATTGACATGTTACTTTGATTCTTACACATTTGCATTAT
192 AAAATTAGATTTTTTTACTTAATTGACCTGTTACGTTAACTCTCACACATTTATGTTAA
* * * * ** * *
14955092 GATTTTAAAATTGTTTGTTCCACATTTATGAGCTTTTACGTTTATTCTTACCAA-TTTACATTGA
1 GATTTTAAATTTATTTGTTCCACATTTATAAGTTTTTACGTCAATTCTTA-CAACTTTACGTTAA
* * * * *
14955156 GATATTTAAATGCCAAGTTTTAGCTAT-A--ATTTTTATCCATATTATTCTTTA-TTTAAAATTA
65 GAT-TTTCAATGGCAAATTTTAACTATAATTATTTTTATCCTTATTATTCTTTATTTTAAAATT-
* *** * * * *
14955217 AAAATTTGCATATCAATAAATATTTTTAACCT-GAGAATATAAATTTAAACGTTTGTTTTTTATT
128 AAAATTTGTATATTGTTAAATACTTTT-ACGTCGAGAATATAAATTTAAAAGTTTGTTTTTCATT
* * * * **
14955281 AAAATTA-ATTTTTTTTATTTAATTGACTTGTTACGTTAACTTTCACATATTTACATTAA
192 AAAATTAGA-TTTTTTTACTTAATTGACCTGTTACGTTAACTCTCACACATTTATGTTAA
** * *
14955340 GATTTTAAATTT-TATTGTTCCATTTTTA-AATGTTTTTACCTCAATTCTTACAACCTTACGTTG
1 GATTTTAAATTTAT-TTGTTCCACATTTATAA-GTTTTTACGTCAATTCTTACAACTTTACGTT-
* * * * **
14955403 AAGATTTTCAATGG-TAATCTTTAACTATAATTACTTTCATCCTTATTATT-ATTATTTTTTAAT
63 AAGATTTTCAATGGCAAAT-TTTAACTATAATTATTTTTATCCTTATTATTCTTTATTTTAAAAT
* * * * * * *
14955466 TAAAATTTATGTACTGTTAAATACTTTTAC-CCAAGAATATAAATTTAAATGTTTGTTTTTGATT
127 TAAAATTTGTATATTGTTAAATACTTTTACGTCGAGAATATAAATTTAAAAGTTTGTTTTTCATT
* *
14955530 AAAATTAGAATTTTATGACTTAATTGA-CTGGTTACGTTAA--CTCACACATTTATGTTAA
192 AAAATTAG-ATTTTTTTACTTAATTGACCT-GTTACGTTAACTCTCACACATTTATGTTAA
* *** * * * * * * * *
14955588 GATATTAAATTTGCATGTTCCCCTTTTATAAGTTATAACATCAATTCATT-CAGCTTTATGTCAA
1 GATTTTAAATTTATTTGTTCCACATTTATAAGTTTTTACGTCAATTC-TTACAACTTTACGTTAA
* * * * * *
14955652 GACTTTTCAAAGG-TAACTTTAACTATAATTA-TTTCA-CTCTTGTTATTCTTTATTTCAAAATT
65 GA-TTTTCAATGGCAAATTTTAACTATAATTATTTTTATC-CTTATTATTCTTTATTTTAAAATT
14955714 AAAATTTGTATATTGTT
128 AAAATTTGTATATTGTT
14955731 TTTTTGGCCT
Statistics
Matches: 913, Mismatches: 184, Indels: 82
0.77 0.16 0.07
Matches are distributed among these distances:
243 9 0.01
244 55 0.06
245 4 0.00
246 22 0.02
247 160 0.18
248 175 0.19
249 129 0.14
250 89 0.10
251 268 0.29
252 2 0.00
ACGTcount: A:0.32, C:0.11, G:0.08, T:0.48
Consensus pattern (250 bp):
GATTTTAAATTTATTTGTTCCACATTTATAAGTTTTTACGTCAATTCTTACAACTTTACGTTAAG
ATTTTCAATGGCAAATTTTAACTATAATTATTTTTATCCTTATTATTCTTTATTTTAAAATTAAA
ATTTGTATATTGTTAAATACTTTTACGTCGAGAATATAAATTTAAAAGTTTGTTTTTCATTAAAA
TTAGATTTTTTTACTTAATTGACCTGTTACGTTAACTCTCACACATTTATGTTAA
Found at i:14954795 original size:22 final size:22
Alignment explanation
Indices: 14954761--14954802 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
14954751 TCTAAGAATA
*
14954761 TAAATTTAAATTTATTTTTAAT
1 TAAAATTAAATTTATTTTTAAT
* *
14954783 TAAAATTAGATTTTTTTTTA
1 TAAAATTAAATTTATTTTTA
14954803 CTTGTTTGAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
TAAAATTAAATTTATTTTTAAT
Found at i:14955680 original size:495 final size:485
Alignment explanation
Indices: 14954345--14955726 Score: 1217
Period size: 495 Copynumber: 2.8 Consensus size: 485
14954335 AAATTAAAAT
* ** * ** ** *
14954345 GATTTTAAATTT-ACTTGTTCCACCTTTATAAGCTTTTATGTCAATTCTTACAATTTTATGTCAA
1 GATTTTAAATTTGA-TTGTTCCACCTTTATAAGTTTTTACATCAATTCTGACAACCTTACATCTA
* * *
14954409 G-GTTTTCAAGGGCAACTTTTAACTATAATTATTCTTATCCTAATATT-TTTTATTTTAAAATTA
65 GCATTTTCAATGACAAC-TTTAACTATAATTATT-TTATCCT--TATTATTTTATTTTAAAATTA
* * * * *
14954472 AAATTTGTTTATTGTTAATTGCTTTTACGTCGAGAATATAAATTTAAAAGTTTGTTTTTCATTAA
126 AAATTTGTATATTGTTAAATACTTTTAC-CCGAGAATATAAATTTAAATGTTTGTTTTTCATTAA
* *
14954537 AATTAGATTTTTTTACTTAATTGACCTATTACGTTAACTCTCACACATTTATGTTAAGATTTTAA
190 AATTAGAATTTTTTACTTAATTGA-CTGTTACGTTAA--CTCACACATTTATGTTAAGATTTTAA
* * * * * *
14954602 ATTTATTTGTTCTACATTTATATGTTTTTACGTCAATTCTTTCAACCTTAGGTTAAGGGTTTTCA
252 ATTTGTTTGTTCCACATTTATAAG-TTTTACGTCAATTC-TTC-ACTTTACGTTAA-GATTTTCA
* * * ** * *
14954667 ATGGTAAATATGAATTATAATTATTTTTATAGTTATTATTCTTTATTTTAAAACTAAAATTTATA
313 AAGGTAAAT-TTAACTAT-A--ATTTTTATCCTTATTATTCTTTA-TTTAAAATTAAAATTTGTA
*** **
14954732 TATTGTTAAATACTTGTAGTCTAAGAATATAAATTTAAATTTATTTTTAATTAAAATTAGATTTT
373 TATCAATAAATACTTGTAACCTAAGAATATAAATTTAAATTTATTTTTAATTAAAATTAGATTTT
** * **
14954797 TTTTTACTTGTTTGACTTGTTCCATTAACTCTCACACATTTATGTTAA
438 TTTTTACTTAATTGACTTGTTACATTAACTCTCACACATTTACATTAA
* * * * *
14954845 GATTTTAAATTTGCTTGTTCTACCTTTATAAGTTTTTACATTAATTCTGACAGCTTTACATCTAG
1 GATTTTAAATTTGATTGTTCCACCTTTATAAGTTTTTACATCAATTCTGACAACCTTACATCTAG
14954910 CATTTTCAATGACAACTTTAAACTATAATTATTTTTATCCTTATTATTGTTTATTTTAAAATTAA
66 CATTTTCAATGACAACTTT-AACTATAATTA-TTTTATCCTTATTA-T-TTTATTTTAAAATTAA
* * * *
14954975 AATTTGTATATTGTTAACTACTTTTATTCCGAGAATTTAAATTTAAAT-TTT-TTTTCCA--AAA
127 AATTTGTATATTGTTAAATACTTTTA-CCCGAGAATATAAATTTAAATGTTTGTTTTTCATTAAA
* * * * * *** *
14955036 GTTAGACTTTTTTACTTAATTGACATGTTACTTTGATTCTTACACATTTGCATTATGATTTTAAA
191 ATTAGAATTTTTTACTTAATTGAC-TGTTACGTT-A-ACTCACACATTTATGTTAAGATTTTAAA
* * ** * * *
14955101 ATTGTTTGTTCCACATTTATGAGCTTTTACGTTTATTCTTACCAATTTACATTGAGATATTT-AA
253 TTTGTTTGTTCCACATTTATAAG-TTTTACGTCAATTCTT--CACTTTACGTTAAGAT-TTTCAA
** * * * *
14955165 ATGCCAAGTTTTAGCTATAATTTTTATCCATATTATTCTTTATTTAAAATTAAAAATTTGCATAT
314 A-GGTAA-ATTTAACTATAATTTTTATCCTTATTATTCTTTATTTAAAATT-AAAATTTGTATAT
* * * * *
14955230 CAATAAATATTTTTAACCTGAGAATATAAATTTAAACGTTTGTTTTTTATTAAAATTA-A-TTTT
376 CAATAAATACTTGTAACCTAAGAATATAAATTTAAA--TTTATTTTTAATTAAAATTAGATTTTT
* * * *
14955293 TTTTATTTAATTGACTTGTTACGTTAACTTTCACATATTTACATTAA
439 TTTTACTTAATTGACTTGTTACATTAACTCTCACACATTTACATTAA
* ** * * *
14955340 GATTTTAAATTTTATTGTTCCATTTTTA-AATGTTTTTACCTCAATTCTTACAACCTTACGT-TG
1 GATTTTAAATTTGATTGTTCCACCTTTATAA-GTTTTTACATCAATTCTGACAACCTTACATCT-
** * **
14955403 AAG-ATTTTCAATGGTAATCTTTAACTATAATTACTTTCATCCTTATTATTATTATTTTTTAATT
64 -AGCATTTTCAATGACAA-CTTTAACTATAATTA-TTTTATCCTTATTATT-TTATTTTAAAATT
* * * * *
14955467 AAAATTTATGTACTGTTAAATACTTTTACCCAAGAATATAAATTTAAATGTTTGTTTTTGATTAA
125 AAAATTTGTATATTGTTAAATACTTTTACCCGAGAATATAAATTTAAATGTTTGTTTTTCATTAA
* *
14955532 AATTAGAATTTTATGACTTAATTGACTGGTTACGTTAACTCACACATTTATGTTAAGATATTAAA
190 AATTAGAATTTT-TTACTTAATTGACT-GTTACGTTAACTCACACATTTATGTTAAGATTTTAAA
** * * * * * *
14955597 TTTGCATGTTCCCCTTTTATAAGTTATAACATCAATTCATTCAGCTTTATGTCAAGACTTTTCAA
253 TTTGTTTGTTCCACATTTATAAGTT-TTACGTCAATTC-TTCA-CTTTACGTTAAGA-TTTTCAA
* *
14955662 AGGTAACTTTAACTATAATTATTTCA-CTCTTGTTATTCTTTATTTCAAAATTAAAATTTGTATA
314 AGGTAAATTTAACTATAATT-TTT-ATC-CTTATTATTCTTTATTT-AAAATTAAAATTTGTATA
14955726 T
375 T
14955727 TGTTTTTTTG
Statistics
Matches: 705, Mismatches: 138, Indels: 81
0.76 0.15 0.09
Matches are distributed among these distances:
493 19 0.03
494 50 0.07
495 205 0.29
496 71 0.10
497 74 0.10
498 126 0.18
499 7 0.01
500 61 0.09
501 34 0.05
502 58 0.08
ACGTcount: A:0.32, C:0.11, G:0.08, T:0.48
Consensus pattern (485 bp):
GATTTTAAATTTGATTGTTCCACCTTTATAAGTTTTTACATCAATTCTGACAACCTTACATCTAG
CATTTTCAATGACAACTTTAACTATAATTATTTTATCCTTATTATTTTATTTTAAAATTAAAATT
TGTATATTGTTAAATACTTTTACCCGAGAATATAAATTTAAATGTTTGTTTTTCATTAAAATTAG
AATTTTTTACTTAATTGACTGTTACGTTAACTCACACATTTATGTTAAGATTTTAAATTTGTTTG
TTCCACATTTATAAGTTTTACGTCAATTCTTCACTTTACGTTAAGATTTTCAAAGGTAAATTTAA
CTATAATTTTTATCCTTATTATTCTTTATTTAAAATTAAAATTTGTATATCAATAAATACTTGTA
ACCTAAGAATATAAATTTAAATTTATTTTTAATTAAAATTAGATTTTTTTTTACTTAATTGACTT
GTTACATTAACTCTCACACATTTACATTAA
Found at i:14965057 original size:18 final size:18
Alignment explanation
Indices: 14965034--14965071 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
14965024 ATAGTTTTCT
*
14965034 TACTATGGCGTTAAGCAA
1 TACTATGGCATTAAGCAA
14965052 TACTATGGCATTAAGCAA
1 TACTATGGCATTAAGCAA
14965070 TA
1 TA
14965072 AATTGTGTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (18 bp):
TACTATGGCATTAAGCAA
Found at i:14965704 original size:248 final size:243
Alignment explanation
Indices: 14965144--14966007 Score: 823
Period size: 248 Copynumber: 3.5 Consensus size: 243
14965134 TGCATTGAAT
* *
14965144 TTAGAGTTTTTTTAACTTAATTGACTTGTTACGTTAACTTTTAATCATTTACGTTAGGATTTTAA
1 TTAGA-TTTTTTTAA-TTAATTGACTTGTTACGTTAACTCTCAATCATTTACGTTAGGATTTTAA
* * * * ** * *
14965209 ATTTGCTTGTTTCACCTTTATAAGTTTTTAGGTT-AATT-ATAA-CTTTATGTTAAGGCTTTTCA
64 ATTTGCTTGTTCCACCTTTATAAATTTTTA-CTTCAATTCTTAAGCTTTACATCAAGACTTTTCA
*
14965271 ATGGTAACTTTTAATTATAATTATTTTTATCCTTATTATTCTTTATTTTAAAATTAAAACTTGTA
128 AT-G-AACTTTTAA-TATAATTATTTTTATCCTTATTATTCTTTATTTTAAAATTAAAATTTGTA
* * * * *
14965336 TATCGTTAAATGCTTTTAGCCTGAAAATATAAATTCAAATGTTTGTTCTTTTAATAAAA
190 TATCATTAAATACTTTTAGCCT-AAAATATAAATT-TAA--TTTATT-TTTTATTAAAA
* * * ** * ** * * * *
14965395 ATAAATTTTTCTTATTTGGTTAACTTGTTGTGTTCACTCAC-A-CATTTATGTTTGGATTTTAAA
1 TTAGATTTTT-TTAATTAATTGACTTGTTACGTTAACTCTCAATCATTTACGTTAGGATTTTAAA
* * *
14965458 TTTGCTTGTTCCATCTTTATAAGTTTTTACTTCAATTCTTAGAGCTTTACATCAAGACATTTCAA
65 TTTGCTTGTTCCACCTTTATAAATTTTTACTTCAATTCTTA-AGCTTTACATCAAGACTTTTCAA
* *
14965523 TGCAAACTTTTAACTATAATTATTTTTATCCTTATTATTTTTTGTTTTAAAAATTAAAATTTGTA
129 TG--AACTTTTAA-TATAATTATTTTTATCCTTATTATTCTTTATTTT-AAAATTAAAATTTGTA
* *
14965588 TATCATTAAATATTTTTAGCCTAAGAATATAAATTTAA-TTAATTTTTATTAAAA
190 TATCATTAAATACTTTTAGCCTAA-AATATAAATTTAATTTATTTTTTATTAAAA
* **
14965642 TTAGATTTTTTTAATTAATTGACTTCTTACGTTAACTCTCACA-CATTTACGTTAAAATTTTAAA
1 TTAGATTTTTTTAATTAATTGACTTGTTACGTTAACTCTCA-ATCATTTACGTTAGGATTTTAAA
* * * *
14965706 TTTGCTTGTTCCACCTGTATAAATTTTTACGTCAATTCTTACAGCTTTATATCAA-AGCTTTTTA
65 TTTGCTTGTTCCACCTTTATAAATTTTTACTTCAATTCTTA-AGCTTTACATCAAGA-CTTTTCA
*
14965770 ATG-A----T-AT-T-A--ATTTTTATGCTTATTATTCTTTATTTTAAAATTAAAATTTGTATAT
128 ATGAACTTTTAATATAATTATTTTTATCCTTATTATTCTTTATTTTAAAATTAAAATTTGTATAT
* * *
14965825 CCTTAAATACTTTTAACCCAAAAGTATAAATTTCAATATTTATTTTTTATTAAAA
193 CATTAAATACTTTTAGCCTAAAA-TATAAATTT--A-ATTTATTTTTTATTAAAA
* * * * ** *
14965880 TTTGATTTTTTTACTTATTTGACTTGTTATGCCCAA-TCTCAATCATTTACATTAGGATTTTAAA
1 TTAGATTTTTTTAATTAATTGACTTGTTACG-TTAACTCTCAATCATTTACGTTAGGATTTTAAA
** * *
14965944 TTTGCTTGTTTTACCTTTATAAATTTTTA-TGTCAATTCTTATAGCTTTACGTCAAGGCTTTTCA
65 TTTGCTTGTTCCACCTTTATAAATTTTTACT-TCAATTCTTA-AGCTTTACATCAAGACTTTTCA
14966008 TTAGTTATTT
Statistics
Matches: 508, Mismatches: 85, Indels: 53
0.79 0.13 0.08
Matches are distributed among these distances:
233 2 0.00
234 45 0.09
235 24 0.05
236 1 0.00
237 3 0.01
238 118 0.23
239 3 0.01
240 1 0.00
241 1 0.00
245 1 0.00
246 21 0.04
247 21 0.04
248 128 0.25
249 3 0.01
250 24 0.05
251 68 0.13
252 44 0.09
ACGTcount: A:0.31, C:0.12, G:0.08, T:0.49
Consensus pattern (243 bp):
TTAGATTTTTTTAATTAATTGACTTGTTACGTTAACTCTCAATCATTTACGTTAGGATTTTAAAT
TTGCTTGTTCCACCTTTATAAATTTTTACTTCAATTCTTAAGCTTTACATCAAGACTTTTCAATG
AACTTTTAATATAATTATTTTTATCCTTATTATTCTTTATTTTAAAATTAAAATTTGTATATCAT
TAAATACTTTTAGCCTAAAATATAAATTTAATTTATTTTTTATTAAAA
Found at i:14965942 original size:238 final size:235
Alignment explanation
Indices: 14965544--14965992 Score: 600
Period size: 238 Copynumber: 1.9 Consensus size: 235
14965534 AACTATAATT
* * * *
14965544 ATTTTTATCCTTATTATTTTTTGTTTTAAAAATTAAAATTTGTATATCATTAAATATTTTTAGCC
1 ATTTTTATCCTTATTATTCTTTATTTTAAAAATTAAAATTTGTATATCATTAAATACTTTTAACC
* *
14965609 TAAGAATATAAATTTAATTAATTTTTATTAAAATTAGATTTTTTTAATTAATTGACTTCTTACGT
66 CAAGAATATAAATTTAATTAATTTTTATTAAAATTAGATTTTTTTAATTAATTGACTTCTTACGC
* *
14965674 TAACTCTCACACATTTACGTTAAAATTTTAAATTTGCTTGTTCCACCTGTATAAATTTTTACGTC
131 CAACTCTCACACATTTACATTAAAATTTTAAATTTGCTTGTTCCACCTGTATAAATTTTTACGTC
14965739 AATTCTTACAGCTTTATATCAAAGCTTTTTAATGATATTA
196 AATTCTTACAGCTTTATATCAAAGCTTTTTAATGATATTA
* *
14965779 ATTTTTATGCTTATTATTCTTTATTTT-AAAATTAAAATTTGTATATCCTTAAATACTTTTAACC
1 ATTTTTATCCTTATTATTCTTTATTTTAAAAATTAAAATTTGTATATCATTAAATACTTTTAACC
* * * * *
14965843 CAA-AAGTATAAATTTCAATATTTATTTTTTATTAAAATTTGATTTTTTTACTTATTTGACTTGT
66 CAAGAA-TATAAATTT--A-A-TTAATTTTTATTAAAATTAGATTTTTTTAATTAATTGACTTCT
* ** ** *
14965907 TATGCCCAA-TCTCA-ATCATTTACATTAGGATTTTAAATTTGCTTGTTTTACCTTTATAAATTT
126 TACG-CCAACTCTCACA-CATTTACATTAAAATTTTAAATTTGCTTGTTCCACCTGTATAAATTT
* *
14965970 TTATGTCAATTCTTATAGCTTTA
189 TTACGTCAATTCTTACAGCTTTA
14965993 CGTCAAGGCT
Statistics
Matches: 184, Mismatches: 23, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
233 2 0.01
234 45 0.24
235 24 0.13
236 1 0.01
237 2 0.01
238 108 0.59
239 2 0.01
ACGTcount: A:0.32, C:0.11, G:0.06, T:0.50
Consensus pattern (235 bp):
ATTTTTATCCTTATTATTCTTTATTTTAAAAATTAAAATTTGTATATCATTAAATACTTTTAACC
CAAGAATATAAATTTAATTAATTTTTATTAAAATTAGATTTTTTTAATTAATTGACTTCTTACGC
CAACTCTCACACATTTACATTAAAATTTTAAATTTGCTTGTTCCACCTGTATAAATTTTTACGTC
AATTCTTACAGCTTTATATCAAAGCTTTTTAATGATATTA
Found at i:14967462 original size:35 final size:35
Alignment explanation
Indices: 14967423--14967490 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
14967413 CTAATTCTAC
* * *
14967423 AAAAGACATATTGTAGAGGTTATGCTTGATCTTGT
1 AAAAGACATATTGTAAAGATTATGCCTGATCTTGT
* *
14967458 AAAAGGCTTATTGTAAAGATTATGCCTGATCTT
1 AAAAGACATATTGTAAAGATTATGCCTGATCTT
14967491 ATTGAAATGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 28 1.00
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.37
Consensus pattern (35 bp):
AAAAGACATATTGTAAAGATTATGCCTGATCTTGT
Found at i:14970040 original size:25 final size:25
Alignment explanation
Indices: 14970012--14970063 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
14970002 TTCAAGTAAA
* *
14970012 TTATGATTTAATAAACATAATGTTC
1 TTATGATTCAATAAACATAATCTTC
14970037 TTATGATTCAATAAACATAATCTTC
1 TTATGATTCAATAAACATAATCTTC
14970062 TT
1 TT
14970064 GCCTTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.44
Consensus pattern (25 bp):
TTATGATTCAATAAACATAATCTTC
Found at i:14972865 original size:16 final size:18
Alignment explanation
Indices: 14972835--14972867 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
14972825 CAAACTCTTT
14972835 TCACTCTTTTATTTTCTA
1 TCACTCTTTTATTTTCTA
14972853 TCACT-TTTT-TTTTCT
1 TCACTCTTTTATTTTCT
14972868 CATGATCTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 4 0.27
18 5 0.33
ACGTcount: A:0.12, C:0.21, G:0.00, T:0.67
Consensus pattern (18 bp):
TCACTCTTTTATTTTCTA
Found at i:14975722 original size:101 final size:101
Alignment explanation
Indices: 14975547--14975749 Score: 352
Period size: 101 Copynumber: 2.0 Consensus size: 101
14975537 TTAAGAAGGC
* * * *
14975547 TAAAGAACAAATGATGAAGGGCAAAAGGAGGAATAAAGAAATTAAGATGGCCTATCTCATGTATC
1 TAAAGAACAAATGATGAAGGGCAAAAAGAGGAACAAAGAAATTAAGATGGCCCATCTCATATATC
14975612 AAATGAAACAAGGCAAAGGGCTTGATGAACTTAGCT
66 AAATGAAACAAGGCAAAGGGCTTGATGAACTTAGCT
* *
14975648 TAAAGAACAAATGATGAAGGGCAAAAAGAGGAACAAGGAAATTAAGATGGCCCATCTTATATATC
1 TAAAGAACAAATGATGAAGGGCAAAAAGAGGAACAAAGAAATTAAGATGGCCCATCTCATATATC
14975713 AAATGAAACAAGGCAAAGGGCTTGATGAACTTAGCT
66 AAATGAAACAAGGCAAAGGGCTTGATGAACTTAGCT
14975749 T
1 T
14975750 TAGTGAACTA
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
101 96 1.00
ACGTcount: A:0.45, C:0.12, G:0.23, T:0.20
Consensus pattern (101 bp):
TAAAGAACAAATGATGAAGGGCAAAAAGAGGAACAAAGAAATTAAGATGGCCCATCTCATATATC
AAATGAAACAAGGCAAAGGGCTTGATGAACTTAGCT
Found at i:14978699 original size:21 final size:21
Alignment explanation
Indices: 14978675--14978716 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
14978665 GTTTTGATTA
*
14978675 TTTTAATATTTATAAATAATAT
1 TTTTAA-ATTTAAAAATAATAT
*
14978697 TTTTCAATTTAAAAATAATA
1 TTTTAAATTTAAAAATAATA
14978717 AGTTGGATGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
TTTTAAATTTAAAAATAATAT
Found at i:14983382 original size:252 final size:250
Alignment explanation
Indices: 14982996--14985549 Score: 2010
Period size: 252 Copynumber: 10.2 Consensus size: 250
14982986 TACTTTTATG
* * * *
14982996 TAAAGCTATAAGAAATAACATAAAAACGT-ATAAAGGTGGAACAA-ACAATTTTAAAATCTTAAT
1 TAAAGCTGTAAGAATTAACGTAAAAAC-TAATAAAGGTGGAACAAGCCAA-TTTAAAATCTTAAT
* * * * * * *
14983059 GTAAATGTGTGAGAGATAAAGAAACAAGTCAATTATGTAAAAAAGCTCTAATTTTAATAAAAAAT
64 GTAAATGTGTGAGAGTTAACGTAACAAGTCAATTAAGTAAAAAA-ATCTAATTTTAATGAAAAAC
* * *
14983124 AAACATTTAAATTTATATTGTTCAGCTAAAAGTATTTAACGATATAAAAATTTTATTTTTAAGAT
128 AAACATTTAAATTTATATT-TTCAGCTAAAAGTATTTAACGATATACAAATTTTAATTTTAAAAT
* *
14983189 AAAGAATAATAAGGATAAAAATAATTATAGTTAAAAGTTACTATTGAAAAGCCTTAACA
192 AAAGAATAATAAGGATAAAAATAATTATAGTTAAAAGTTACCATTGAAAAGTCTTAACA
* * * * * * *
14983248 CAAAGCTATAAGAATTGA-GATAAAAGCTAAGAAAGGTGGAACAAGCCAATTTACAATCTTAATT
1 TAAAGCTGTAAGAATTAACG-TAAAAACTAATAAAGGTGGAACAAGCCAATTTAAAATCTTAATG
* * * * *
14983312 TAAATGTATGAAAGTTAACGGAATAAGTGAATTATA-TAAAAAAACTCTAATTTTAATGAAAAAC
65 TAAATGTGTGAGAGTTAACGTAACAAGTCAATTA-AGTAAAAAAA-TCTAATTTTAATGAAAAAC
* * *
14983376 AAACATTTAAATTTATATTCTCAGGCTAAAAGTATTTAATGATATACAAATTTTAGTTTTAAAAT
128 AAACATTTAAATTTATATTTTCA-GCTAAAAGTATTTAACGATATACAAATTTTAATTTTAAAAT
* * * * * *
14983441 TAAGAATAATAAGGATAAACATAATTATAATTAAAAGTTATCAATGAAAAGTCTTGACA
192 AAAGAATAATAAGGATAAAAATAATTATAGTTAAAAGTTACCATTGAAAAGTCTTAACA
* * * * * *
14983500 TTAAGTTATAAAAATTGACGTAAAAA-TGTATAAA-----AA-AAG--AA-TT--AA-C-----G
1 TAAAGCTGTAAGAATTAACGTAAAAACT-AATAAAGGTGGAACAAGCCAATTTAAAATCTTAATG
* * * * * * * * *
14983547 TAAATCTGTGAGACTTAAGGTAACCAGTCAATTAACT-CAAAAA-C---TTTTGATGAAAATCGA
65 TAAATGTGTGAGAGTTAACGTAACAAGTCAATTAAGTAAAAAAATCTAATTTTAATGAAAAACAA
* * * * *
14983607 ACATTTAAATTTATATTCTCAAGCTGAAAGTATTTAATGGTATACAAATTTAAATTTTAAAATAA
130 ACATTTAAATTTATATTTTC-AGCTAAAAGTATTTAACGATATACAAATTTTAATTTTAAAATAA
* * * * ** **
14983672 AAAATAATAAAGATAAAAATAATCATAGTTAAAAGTTTCCATTGAAAACCCTTTAATG
194 AGAATAATAAGGATAAAAATAATTATAGTTAAAAGTTACCATTGAAAAGTC-TTAACA
* * * * * * * * *
14983730 TAACA-TTGTAAGAATTGACGTAAAAGCTTATAATGGTAGAACATGCAAATTTAAAATCCTAATG
1 TAA-AGCTGTAAGAATTAACGTAAAAACTAATAAAGGTGGAACAAGCCAATTTAAAATCTTAATG
* * * * *
14983794 TAAATGTGTGACAATTAATGTAACACGTCAATTAAGTAAAAAAAAAATCTAATTTTCAT-AAGAA
65 TAAATGTGTGAGAGTTAACGTAACAAGTCAATTAAGT---AAAAAAATCTAATTTTAATGAA-AA
* * * *
14983858 ATAAATATTTAAATTTATATTCTTGAGCTAAAAGTATTTAACGATGTACAAATTTTAATTTTAAA
126 ACAAACATTTAAATTTATATT-TTCAGCTAAAAGTATTTAACGATATACAAATTTTAATTTTAAA
* * *
14983923 ATAAAGAATAATAAGGATAAGAATAATTATAGTTAAAAGTTACCCTTGAAAAGTCTTGACA
190 ATAAAGAATAATAAGGATAAAAATAATTATAGTTAAAAGTTACCATTGAAAAGTCTTAACA
* * * * * * ** * *
14983984 TAAAGCCGTAAGAATTTATGTAAATACTTATAAAGGTTGAACAAGAAAACTTAAAATCTTAATAT
1 TAAAGCTGTAAGAATTAACGTAAAAACTAATAAAGGTGGAACAAGCCAATTTAAAATCTTAATGT
* * * *
14984049 AAATGTGTGAGAGTTAACTTAACAAATCAAGTAAGTAAAAAAATATAATTTTAATGAAAAACAAA
66 AAATGTGTGAGAGTTAACGTAACAAGTCAATTAAGTAAAAAAATCTAATTTTAATGAAAAACAAA
* * * *
14984114 CATTTAAATTTACATTCTTC-GACT-AAA-TATTGAACAATATACAAATTTTAATTTTAAAACAA
131 CATTTAAATTTATATT-TTCAG-CTAAAAGTATTTAACGATATACAAATTTTAATTTTAAAATAA
* * * * * **
14984176 AGAATAATAAGGATAAAAGTAATTATAGTTAAAAGTTACGATTGAAATGTCGTGATG
194 AGAATAATAAGGATAAAAATAATTATAGTTAAAAGTTACCATTGAAAAGTCTTAACA
** * * * * * * ** * *
14984233 TAAAAATGTAAGAATTAACATAAAAACTTATAAAGGTAGAATAAACGAATAAAAAATCAT-ACGT
1 TAAAGCTGTAAGAATTAACGTAAAAACTAATAAAGGTGGAACAAGCCAATTTAAAATCTTAATGT
* * * * * * * * *
14984297 ATATATGTGACAGTTAATGTAACATGTCCATTAAGTAAAAAGAATCTAAAGTTT-GTGTAAAACA
66 AAATGTGTGAGAGTTAACGTAACAAGTCAATTAAGTAAAAA-AATCT-AATTTTAATGAAAAACA
* * * ** * * *
14984361 AACAATTGAATTCATATTGTTGTGCTAAAAGTATATAATGATGA-GCAAATTTTAATTTTAAAAT
129 AACATTTAAATTTATATT-TTCAGCTAAAAGTATTTAACGAT-ATACAAATTTTAATTTTAAAAT
* * * * * ** *
14984425 AAAAAATAATAATGATAAAAATAATTATAGTTAATAGTTGCAATTG-AAAGTCTCGACC
192 AAAGAATAATAAGGATAAAAATAATTATAGTTAAAAGTTACCATTGAAAAGTCTTAACA
* * *
14984483 TAAAGTTGTAAAAATTTACGTAAAAACTCAATAAA-GTGGAACAAG-CATATTTAAAATCTTAAT
1 TAAAGCTGTAAGAATTAACGTAAAAACT-AATAAAGGTGGAACAAGCCA-ATTTAAAATCTTAAT
* * * * * *
14984546 GTAAATGTGTGAGCA-TTAATGTATCAACTCAATTAAGTAAAAAATTTTTATTTTAATGAAAAAC
64 GTAAATGTGTGAG-AGTTAACGTAACAAGTCAATTAAGTAAAAAAATCTAATTTTAATGAAAAAC
* * * * * * * **
14984610 AATCATTTTAATTTTTATTCTCGAGCGAAAAGTATTTAACTATACACAAATTTTAATTGAAAAAT
128 AAACATTTAAATTTATATTTTC-AGCTAAAAGTATTTAACGATATACAAATTTTAATTTTAAAAT
* * * * * * * *
14984675 AAATAATTACAAGGATAAAAATTATTATAG-TAAAAGTTGCCATTAAAAAGTTATTAACG
192 AAAGAATAATAAGGATAAAAATAATTATAGTTAAAAGTTACCATTGAAAAG-TCTTAACA
* * * * * * *
14984734 TAAAACAGTAAAAATTAACGTAAAAACTCATAAAGGTGGAGCAA-ACAAGTTTAAAATCCTAATG
1 TAAAGCTGTAAGAATTAACGTAAAAACTAATAAAGGTGGAACAAGCCAA-TTTAAAATCTTAATG
* * * * *
14984798 TAAATGTGTGGGAGTTAACTTAACATGTCAATTAAGTAATAAAAATATAATTTTATTGAAAAACA
65 TAAATGTGTGAGAGTTAACGTAACAAGTCAATTAAGTAA-AAAAATCTAATTTTAATGAAAAACA
* * ** *
14984863 AACATTTAAATTTATATTCTT-GGACTAAAAGTATTTAATGATATATGAATTTTAATTTTGAAAT
129 AACATTTAAATTTATATT-TTCAG-CTAAAAGTATTTAACGATATACAAATTTTAATTTTAAAAT
* * * * * *
14984927 AAATAAAAATAAGTACAAAAATAATTATAGTTAAAAGTTACAATTGAAAAGCCTTAACA
192 AAAGAATAATAAGGATAAAAATAATTATAGTTAAAAGTTACCATTGAAAAGTCTTAACA
* ** * *
14984986 TAAAGCTGTAAGAATTAACATAAAAACTTGTAAAGGTGGAACAAG-CAAATTAAAAT-TGTAAAG
1 TAAAGCTGTAAGAATTAACGTAAAAACTAATAAAGGTGGAACAAGCCAATTTAAAATCT-TAATG
* * * * * *
14985049 TAAATTTGTGAGAGTAAATGTAACAAAG-AAATTATGTAAAAAAAAAAATCAAATTTTAATGAAA
65 TAAATGTGTGAGAGTTAACGTAAC-AAGTCAATTAAGT----AAAAAAATCTAATTTTAATGAAA
** * * *
14985113 AGTAAACATTTAAATTTATATTCTCGAACTAAAAATATTTAAC-AGTATACAAATTTTAATTTTT
125 AACAAACATTTAAATTTATATTTTC-AGCTAAAAGTATTTAACGA-TATACAAATTTTAA-TTTT
* * * *** * * **
14985177 AAAATAAAGTATAATTAGGATAAAAATAATTATAGCTAAAAGTTGGGATT-AAATGTTTTAATG
187 AAAATAAAGAATAATAAGGATAAAAATAATTATAGTTAAAAGTTACCATTGAAAAGTCTTAACA
* * * * ** ** * *
14985240 TAAAACTGTAAGAATTGAA-ATACATACTCGTAAAAATGGAACAAACAAATTTAAAATCTTAATG
1 TAAAGCTGTAAGAATT-AACGTAAAAACTAATAAAGGTGGAACAAGCCAATTTAAAATCTTAATG
* * * * *
14985304 TAAATGTGTGAGAATTATCATAACAAGTCCATTAAGTGAAAAAAAAAT-TAATTTTACTGAAAAA
65 TAAATGTGTGAGAGTTAACGTAACAAGTCAATTAAGT---AAAAAAATCTAATTTTAATGAAAAA
* * * *
14985368 CAAACATTTTAATTTATATTCT-AGATCTAAAAATATTTAACGATATATAAATTTTAATTTTAAA
127 CAAACATTTAAATTTATATTTTCAG--CTAAAAGTATTTAACGATATACAAATTTTAATTTTAAA
* * * * **
14985432 ATAAAAAATAATAAAGCTAAAAATAATTATATTTAAAAGTTACCATTGAAAAG-CTTTGATGA
190 ATAAAGAATAATAAGGATAAAAATAATTATAGTTAAAAGTTACCATTGAAAAGTC-TT-AACA
* * * * *
14985494 AAAAG-TATAAGAATTAACATAAAAACCT-ATAAAGGTGAAACAAGCAAATTTAAAAT
1 TAAAGCTGTAAGAATTAACGTAAAAA-CTAATAAAGGTGGAACAAGCCAATTTAAAAT
14985550 TCTAACGTAG
Statistics
Matches: 1817, Mismatches: 396, Indels: 177
0.76 0.17 0.07
Matches are distributed among these distances:
229 112 0.06
230 29 0.02
231 2 0.00
232 1 0.00
234 6 0.00
235 28 0.02
236 2 0.00
238 2 0.00
239 2 0.00
240 1 0.00
241 4 0.00
242 1 0.00
243 2 0.00
244 2 0.00
246 3 0.00
247 33 0.02
248 34 0.02
249 173 0.10
250 151 0.08
251 279 0.15
252 418 0.23
253 129 0.07
254 210 0.12
255 191 0.11
256 2 0.00
ACGTcount: A:0.49, C:0.08, G:0.12, T:0.32
Consensus pattern (250 bp):
TAAAGCTGTAAGAATTAACGTAAAAACTAATAAAGGTGGAACAAGCCAATTTAAAATCTTAATGT
AAATGTGTGAGAGTTAACGTAACAAGTCAATTAAGTAAAAAAATCTAATTTTAATGAAAAACAAA
CATTTAAATTTATATTTTCAGCTAAAAGTATTTAACGATATACAAATTTTAATTTTAAAATAAAG
AATAATAAGGATAAAAATAATTATAGTTAAAAGTTACCATTGAAAAGTCTTAACA
Found at i:14984799 original size:251 final size:252
Alignment explanation
Indices: 14983591--14985554 Score: 1597
Period size: 251 Copynumber: 7.8 Consensus size: 252
14983581 ACTCAAAAAC
* * * * * *
14983591 TTTTGATGAAAATCGAACATTTAAATTTATATTCTCAAGCTGAAAGTATTTAA-TGGTATACAAA
1 TTTTAATGAAAAACAAACATTTAAATTTATATTCTCGAGCTAAAAGTATTTAACT-ATATACAAA
* * * * *
14983655 TTTAAATTTTAAAATAAAAAATAATAAAGATAAAAATAATCATAGTTAAAAGTTTCCATTGAAAA
65 TTTTAATTTTAAAATAAATAATAATAAGGATAAAAATAATTATAGTTAAAAGTTACCATTGAAAA
** * * * ** * * * * * * **
14983720 CCCTTTAATGTAACATTGTAAGAATTGACGTAAAAGCTTATAATGGTAGAACATGCAAATTTAAA
130 GTC-TTGACGTAAAACAGTAAGAATTAACATAAAAACTCATAAAGGTGGAACAAAC-AATTTAAA
* * *
14983785 ATCCTAATGTAAATGTGTGA-CAATTAATGTAACACGTCAATTAAGTAAAAAAAAAATCTAA
193 ATCCTAATGTAAATGTGTGAGCAGTTAATGTAACAAGTCAATTAAGT--AAAAAAAATTTAA
* * * * * *
14983846 TTTTCAT-AAGAAATAAATATTTAAATTTATATTCTTGAGCTAAAAGTATTTAACGATGTACAAA
1 TTTTAATGAA-AAACAAACATTTAAATTTATATTCTCGAGCTAAAAGTATTTAACTATATACAAA
* * *
14983910 TTTTAATTTTAAAATAAAGAATAATAAGGATAAGAATAATTATAGTTAAAAGTTACCCTTGAAAA
65 TTTTAATTTTAAAATAAATAATAATAAGGATAAAAATAATTATAGTTAAAAGTTACCATTGAAAA
* * * * ** * * * * *
14983975 GTCTTGACATAAAGCCGTAAGAATTTATGTAAATACTTATAAAGGTTGAACAAGAAAACTTAAAA
130 GTCTTGACGTAAAACAGTAAGAATTAACATAAAAACTCATAAAGGTGGAACAA-ACAATTTAAAA
* * * * *
14984040 TCTTAATATAAATGTGTGAG-AGTTAACT-TAACAAATCAAGTAAGT-AAAAAAATATAA
194 TCCTAATGTAAATGTGTGAGCAGTTAA-TGTAACAAGTCAATTAAGTAAAAAAAATTTAA
* * *
14984097 TTTTAATGAAAAACAAACATTTAAATTTACATTCTTCGA-CT-AAA-TATTGAACAATATACAAA
1 TTTTAATGAAAAACAAACATTTAAATTTATATTC-TCGAGCTAAAAGTATTTAACTATATACAAA
* * * * *
14984159 TTTTAATTTTAAAACAAAGAATAATAAGGATAAAAGTAATTATAGTTAAAAGTTACGATTGAAAT
65 TTTTAATTTTAAAATAAATAATAATAAGGATAAAAATAATTATAGTTAAAAGTTACCATTGAAAA
* * * * * **
14984224 GTCGTGATGTAAAA-ATGTAAGAATTAACATAAAAACTTATAAAGGTAGAATAAACGAATAAAAA
130 GTCTTGACGTAAAACA-GTAAGAATTAACATAAAAACTCATAAAGGTGGAACAAAC-AATTTAAA
* * * * * * * *
14984288 ATCAT-ACGTATATATGTGA-CAGTTAATGTAACATGTCCATTAAGTAAAAAGAATCTAAA
193 ATCCTAATGTAAATGTGTGAGCAGTTAATGTAACAAGTCAATTAAGTAAAAAAAAT-TTAA
* * * * * * * * * * *
14984347 GTTT-GTGTAAAACAAACAATTGAATTCATATTGTTGTGCTAAAAGTATATAA-TGATGA-GCAA
1 TTTTAATGAAAAACAAACATTTAAATTTATATTCTCGAGCTAAAAGTATTTAACT-AT-ATACAA
* * * * *
14984409 ATTTTAATTTTAAAATAAAAAATAATAATGATAAAAATAATTATAGTTAATAGTTGCAATTG-AA
64 ATTTTAATTTTAAAATAAATAATAATAAGGATAAAAATAATTATAGTTAAAAGTTACCATTGAAA
* * *** * * * *
14984473 AGTCTCGACCTAAAGTTGTAAAAATTTACGTAAAAACTCAATAAA-GTGGAACAAGCATATTTAA
129 AGTCTTGACGTAAAACAGTAAGAATTAACATAAAAACTC-ATAAAGGTGGAACAAACA-ATTTAA
* * * * *
14984537 AATCTTAATGTAAATGTGTGAGCA-TTAATGTATCAACTCAATTAAGT-AAAAAATTTTTA
192 AATCCTAATGTAAATGTGTGAGCAGTTAATGTAACAAGTCAATTAAGTAAAAAAAATTTAA
* * * * *
14984596 TTTTAATGAAAAACAATCATTTTAATTTTTATTCTCGAGCGAAAAGTATTTAACTATACACAAAT
1 TTTTAATGAAAAACAAACATTTAAATTTATATTCTCGAGCTAAAAGTATTTAACTATATACAAAT
** * * * * *
14984661 TTTAATTGAAAAATAAATAATTACAAGGATAAAAATTATTATAG-TAAAAGTTGCCATTAAAAAG
66 TTTAATTTTAAAATAAATAATAATAAGGATAAAAATAATTATAGTTAAAAGTTACCATTGAAAAG
* * * * *
14984725 TTATTAACGTAAAACAGTAAAAATTAACGTAAAAACTCATAAAGGTGGAGCAAACAAGTTTAAAA
131 -TCTTGACGTAAAACAGTAAGAATTAACATAAAAACTCATAAAGGTGGAACAAACAA-TTTAAAA
* * * *
14984790 TCCTAATGTAAATGTGTG-GGAGTTAACT-TAACATGTCAATTAAGTAATAAAAATATAA
194 TCCTAATGTAAATGTGTGAGCAGTTAA-TGTAACAAGTCAATTAAGTAAAAAAAATTTAA
* * **
14984848 TTTTATTGAAAAACAAACATTTAAATTTATATTCTTG-GACTAAAAGTATTTAA-TGATATATGA
1 TTTTAATGAAAAACAAACATTTAAATTTATATTCTCGAG-CTAAAAGTATTTAACT-ATATACAA
* * * * *
14984911 ATTTTAATTTTGAAATAAATAAAAATAAGTACAAAAATAATTATAGTTAAAAGTTACAATTGAAA
64 ATTTTAATTTTAAAATAAATAATAATAAGGATAAAAATAATTATAGTTAAAAGTTACCATTGAAA
* * * * * ** * *
14984976 AGCCTTAACATAAAGCTGTAAGAATTAACATAAAAACTTGTAAAGGTGGAACAAGCAAATTAAAA
129 AGTCTTGACGTAAAACAGTAAGAATTAACATAAAAACTCATAAAGGTGGAACAAACAATTTAAAA
** * * * * * **
14985041 TTGTAAAGTAAATTTGTGAG-AGTAAATGTAACAAAG-AAATTATGTAAAAAAAAAAATCAAA
194 TCCTAATGTAAATGTGTGAGCAGTTAATGTAAC-AAGTCAATTAAGT---AAAAAAAATTTAA
** * *
14985102 TTTTAATGAAAAGTAAACATTTAAATTTATATTCTCGAACTAAAAATATTTAAC-AGTATACAAA
1 TTTTAATGAAAAACAAACATTTAAATTTATATTCTCGAGCTAAAAGTATTTAACTA-TATACAAA
* * ***
14985166 TTTTAATTTTTAAAATAAAGT-ATAATTAGGATAAAAATAATTATAGCTAAAAGTTGGGATT-AA
65 TTTTAA-TTTTAAAATAAA-TAATAATAAGGATAAAAATAATTATAGTTAAAAGTTACCATTGAA
* * * * * * * * **
14985229 ATGTTTTAATGTAAAACTGTAAGAATTGAA-ATACATACTCGTAAAAATGGAACAAACAAATTTA
128 AAGTCTTGACGTAAAACAGTAAGAATT-AACATAAAAACTCATAAAGGTGGAACAAAC-AATTTA
* * * * *
14985293 AAATCTTAATGTAAATGTGTGAG-AATT-ATCATAACAAGTCCATTAAGTGAAAAAAAAATTAA
191 AAATCCTAATGTAAATGTGTGAGCAGTTAAT-GTAACAAGTCAATTAAGT-AAAAAAAATTTAA
* * * * * * *
14985355 TTTTACTGAAAAACAAACATTTTAATTTATATTCTAGATCTAAAAATATTTAACGATATATAAAT
1 TTTTAATGAAAAACAAACATTTAAATTTATATTCTCGAGCTAAAAGTATTTAACTATATACAAAT
* * * *
14985420 TTTAATTTTAAAATAAAAAATAATAAAGCTAAAAATAATTATATTTAAAAGTTACCATTGAAAAG
66 TTTAATTTTAAAATAAATAATAATAAGGATAAAAATAATTATAGTTAAAAGTTACCATTGAAAAG
* * *
14985485 -CTTTGATG-AAAA-AGTATAAGAATTAACATAAAAAC-CTATAAAGGTGAAACAAGCAAATTTA
131 TC-TTGACGTAAAACAG--TAAGAATTAACATAAAAACTC-ATAAAGGTGGAACAAAC-AATTTA
*
14985546 AAATTCTAA
191 AAATCCTAA
14985555 CGTAGATGAT
Statistics
Matches: 1356, Mismatches: 294, Indels: 120
0.77 0.17 0.07
Matches are distributed among these distances:
247 1 0.00
248 32 0.02
249 174 0.13
250 156 0.12
251 261 0.19
252 203 0.15
253 138 0.10
254 200 0.15
255 190 0.14
256 1 0.00
ACGTcount: A:0.49, C:0.08, G:0.11, T:0.32
Consensus pattern (252 bp):
TTTTAATGAAAAACAAACATTTAAATTTATATTCTCGAGCTAAAAGTATTTAACTATATACAAAT
TTTAATTTTAAAATAAATAATAATAAGGATAAAAATAATTATAGTTAAAAGTTACCATTGAAAAG
TCTTGACGTAAAACAGTAAGAATTAACATAAAAACTCATAAAGGTGGAACAAACAATTTAAAATC
CTAATGTAAATGTGTGAGCAGTTAATGTAACAAGTCAATTAAGTAAAAAAAATTTAA
Found at i:14984949 original size:502 final size:495
Alignment explanation
Indices: 14982845--14985549 Score: 2048
Period size: 502 Copynumber: 5.4 Consensus size: 495
14982835 AACCGAATAA
* ** * * *
14982845 GTCAATTAAG-AAAAAAAATTCTAATTTTAATGAAAAGTAAACATTTATATTTATATTC-TCGAA
1 GTCAATTAAGTAAAAAAAA-TATAATTTT-ATGAAAAACAAACATTTAAATTTATATTCTTGGAG
* * * * * *
14982908 CTAAAAGTATTTAACGATATACAAATTTTAGTTTTAAAATATAGAATAATAAGGATAAAAATAAT
64 CTAAAAGTATTTAACGATATATAAATTTTAATTTTAAAATAAAAAATAATAA-TACAAAAATAAT
* * * * * * *
14982973 TATAATTAAAAATTAC--TT------T-TATG---TAAAGCTATAAGAAATAACATAAAAACGTA
128 TATAGTTAAAAGTTACAATTGAAAAGTCT-TGACATAAAGCTGTAAGAATTTACGTAAAAACTTA
* * * * * *
14983026 TAAAGGTGGAACAAACAATTTTAAAATCTTAATGTAAATGTGTGAGAGATAAAGAAACAAGTCAA
192 TAAAGGTGGAACAAGCAA-ATTAAAATCTTAATGTAAATGTGTGAGAGTTAATGTAACAAATCAA
* * * * * *
14983091 TTATGTAAAAAAGCTCTAATTTTAATAAAAAATAAACATTTAAATTTATATTGTTC-AGCTAAAA
256 TTAAGTAAAAAA-ATATAATTTTAATGAAAAACAAACATTTAAATTTATATT-CTCGA-C-AAAA
* * * * *
14983155 GTATTTAACGATATAAAAATTTTATTTTTAAGATAAAGAATAATAAGGATAAAAATAATTATAGT
317 -TATTTAAC-ATATACAAATTTTAATTTTAAAATAAATAATAATAAGGATAAAAATAATTATAGC
* * * ** *** * * * * * *
14983220 TAAAAGTTACTATTGAAAAGCCTTAACACAAAGCTA-TAAGAATTGAGATAAAAGCTAAGAAAGG
380 TAAAAGTTGCGATT-AAATGTTTTAATGTAAAAC-AGTAAGAATTAACATAAAAACTCATAAAGG
* * * * * * * * *
14983284 TGGAACAAGCCAATTTACAATCTTAATTTAAATGTATGA-AAGTTAACGGAATAA
443 TGGAACAA-ACAATTTAAAATCCTAATGTAAATGTGTGACAA-TTAATGTAACAT
* * * **
14983338 GTGAATTATA-TAAAAAAACTCTAATTTTAATGAAAAACAAACATTTAAATTTATATTCTCAG-G
1 GTCAATTA-AGTAAAAAAAATATAATTTT-ATGAAAAACAAACATTTAAATTTATATTCTTGGAG
* * * * * * * *
14983401 CTAAAAGTATTTAATGATATACAAATTTTAGTTTTAAAATTAAGAATAATAAGGATAAACATAAT
64 CTAAAAGTATTTAACGATATATAAATTTTAATTTTAAAATAAAAAATAATAA-TACAAAAATAAT
* * * * * *
14983466 TATAATTAAAAGTTATCAA-TGAAAAGTCTTGACATTAAGTTATAAAAATTGACGTAAAAA-TGT
128 TATAGTTAAAAGTTA-CAATTGAAAAGTCTTGACATAAAGCTGTAAGAATTTACGTAAAAACT-T
* * * * *
14983529 ATAAA-----AA-AAG--AATT--AA-C-----GTAAATCTGTGAGACTTAAGGTAACCAGTCAA
191 ATAAAGGTGGAACAAGCAAATTAAAATCTTAATGTAAATGTGTGAGAGTTAATGTAACAAATCAA
* * * * * * * *
14983578 TTAACT---CAAA-A-ACTTTTGATGAAAATCGAACATTTAAATTTATATTCTCAAGCTGAAAGT
256 TTAAGTAAAAAAATATAATTTTAATGAAAAACAAACATTTAAATTTATATTCTCGA-C--AAAAT
** * * * * *
14983638 ATTTAATGGTATACAAATTTAAATTTTAAAATAAAAAATAATAAAGATAAAAATAATCATAGTTA
318 ATTTAA-CATATACAAATTTTAATTTTAAAATAAATAATAATAAGGATAAAAATAATTATAGCTA
* * *** * ** * * * * * *
14983703 AAAGTTTCCATTGAAAACCCTTTAATGTAACATTGTAAGAATTGACGTAAAAGCTTATAATGGTA
382 AAAGTTGCGATT--AAATGTTTTAATGTAAAACAGTAAGAATTAACATAAAAACTCATAAAGGTG
** *
14983768 GAACATGCAAATTTAAAATCCTAATGTAAATGTGTGACAATTAATGTAACAC
445 GAACAAAC-AATTTAAAATCCTAATGTAAATGTGTGACAATTAATGTAACAT
* * *
14983820 GTCAATTAAGTAAAAAAAAAATCTAATTTTCAT-AAGAAATAAATATTTAAATTTATATTCTT-G
1 GTCAATTAAGT--AAAAAAAATATAATTTT-ATGAA-AAACAAACATTTAAATTTATATTCTTGG
* * * * * *
14983883 AGCTAAAAGTATTTAACGATGTACAAATTTTAATTTTAAAATAAAGAATAATAAGGATAAGAATA
62 AGCTAAAAGTATTTAACGATATATAAATTTTAATTTTAAAATAAAAAATAATAA-TACAAAAATA
** * * *
14983948 ATTATAGTTAAAAGTTACCCTTGAAAAGTCTTGACATAAAGCCGTAAGAATTTATGTAAATACTT
126 ATTATAGTTAAAAGTTACAATTGAAAAGTCTTGACATAAAGCTGTAAGAATTTACGTAAAAACTT
* * *
14984013 ATAAAGGTTGAACAAGAAAACTTAAAATCTTAATATAAATGTGTGAGAGTTAACT-TAACAAATC
191 ATAAAGGTGGAACAAGCAAA-TTAAAATCTTAATGTAAATGTGTGAGAGTTAA-TGTAACAAATC
* * *
14984077 AAGTAAGTAAAAAAATATAATTTTAATGAAAAACAAACATTTAAATTTACATTCTTCGACTAAAT
254 AATTAAGTAAAAAAATATAATTTTAATGAAAAACAAACATTTAAATTTATATTC-TCGACAAAAT
* * * * *
14984142 ATTGAACAATATACAAATTTTAATTTTAAAACAAAGAATAATAAGGATAAAAGTAATTATAGTTA
318 ATTTAAC-ATATACAAATTTTAATTTTAAAATAAATAATAATAAGGATAAAAATAATTATAGCTA
* ** * * *
14984207 AAAGTTACGATTGAAATGTCGTGATGTAAAA-ATGTAAGAATTAACATAAAAACTTATAAAGGTA
382 AAAGTTGCGATT-AAATGTTTTAATGTAAAACA-GTAAGAATTAACATAAAAACTCATAAAGGTG
* ** * * * * *
14984271 GAATAAACGAATAAAAAATCAT-ACGTATATATGTGACAGTTAATGTAACAT
445 GAACAAAC-AATTTAAAATCCTAATGTAAATGTGTGACAATTAATGTAACAT
* * * * * * * * * * *
14984322 GTCCATTAAGTAAAAAGAATCTAAAGTTTGTGTAAAACAAACAATTGAATTCATATTGTT-GTGC
1 GTCAATTAAGTAAAAAAAATAT-AATTTTATGAAAAACAAACATTTAAATTTATATTCTTGGAGC
* * ** *
14984386 TAAAAGTATATAATGATGA-GCAAATTTTAATTTTAAAATAAAAAATAATAATGATAAAAATAAT
65 TAAAAGTATTTAACGAT-ATATAAATTTTAATTTTAAAATAAAAAATAATAAT-ACAAAAATAAT
* * * * * * *
14984450 TATAGTTAATAGTTGCAATTG-AAAGTCTCGACCTAAAGTTGTAAAAATTTACGTAAAAACTCAA
128 TATAGTTAAAAGTTACAATTGAAAAGTCTTGACATAAAGCTGTAAGAATTTACGTAAAAACT-TA
* * *
14984514 TAAA-GTGGAACAAGCATATTTAAAATCTTAATGTAAATGTGTGAGCA-TTAATGTATCAACTCA
192 TAAAGGTGGAACAAGCA-AATTAAAATCTTAATGTAAATGTGTGAG-AGTTAATGTAACAAATCA
* * * * * *
14984577 ATTAAGTAAAAAATTTTTATTTTAATGAAAAACAATCATTTTAATTTTTATTCTCGAGCGAAAAG
255 ATTAAGTAAAAAAATATAATTTTAATGAAAAACAAACATTTAAATTTATATTCTCGA-C-AAAA-
* ** * * *
14984642 TATTTAACTATACACAAATTTTAATTGAAAAATAAATAATTACAAGGATAAAAATTATTATAG-T
317 TATTTAAC-ATATACAAATTTTAATTTTAAAATAAATAATAATAAGGATAAAAATAATTATAGCT
* * * * *
14984706 AAAAGTTGCCATTAAAAAGTTATTAACGTAAAACAGTAAAAATTAACGTAAAAACTCATAAAGGT
381 AAAAGTTGCGATT-AAATGTT-TTAATGTAAAACAGTAAGAATTAACATAAAAACTCATAAAGGT
* ** *
14984771 GGAGCAAACAAGTTTAAAATCCTAATGTAAATGTGTGGGAGTTAACT-TAACAT
444 GGAACAAACAA-TTTAAAATCCTAATGTAAATGTGTGACAATTAA-TGTAACAT
*
14984824 GTCAATTAAGTAATAAAAATATAATTTTATTGAAAAACAAACATTTAAATTTATATTCTTGGA-C
1 GTCAATTAAGTAAAAAAAATATAATTTTA-TGAAAAACAAACATTTAAATTTATATTCTTGGAGC
* * *
14984888 TAAAAGTATTTAATGATATATGAATTTTAATTTTGAAATAAATAAA-AATAAGTACAAAAATAAT
65 TAAAAGTATTTAACGATATATAAATTTTAATTTTAAAATAAA-AAATAATAA-TACAAAAATAAT
* * * * *
14984952 TATAGTTAAAAGTTACAATTGAAAAGCCTTAACATAAAGCTGTAAGAATTAACATAAAAACTTGT
128 TATAGTTAAAAGTTACAATTGAAAAGTCTTGACATAAAGCTGTAAGAATTTACGTAAAAACTTAT
* * * **
14985017 AAAGGTGGAACAAGCAAATTAAAAT-TGTAAAGTAAATTTGTGAGAGTAAATGTAACAAAGAAAT
193 AAAGGTGGAACAAGCAAATTAAAATCT-TAATGTAAATGTGTGAGAGTTAATGTAACAAATCAAT
* * **
14985081 TATGTAAAAAAAAAAATCAAATTTTAATGAAAAGTAAACATTTAAATTTATATTCTCGAACTAAA
257 TAAGT--AAAAAAATAT--AATTTTAATGAAAAACAAACATTTAAATTTATATTCTCG-AC--AA
*
14985146 AATATTTAACAGTATACAAATTTTAATTTTTAAAATAAAGT-ATAATTAGGATAAAAATAATTAT
315 AATATTTAACA-TATACAAATTTTAA-TTTTAAAATAAA-TAATAATAAGGATAAAAATAATTAT
* * * * *
14985210 AGCTAAAAGTTGGGATTAAATGTTTTAATGTAAAACTGTAAGAATTGAA-ATACATACTCGTAAA
377 AGCTAAAAGTTGCGATTAAATGTTTTAATGTAAAACAGTAAGAATT-AACATAAAAACTCATAAA
** * * * *
14985274 AATGGAACAAACAAATTTAAAATCTTAATGTAAATGTGTGAGAATT-ATCATAACAA
441 GGTGGAACAAAC-AATTTAAAATCCTAATGTAAATGTGTGACAATTAAT-GTAACAT
* * *
14985330 GTCCATTAAGTGAAAAAAAA-ATTAATTTTACTGAAAAACAAACATTTTAATTTATATTC-TAGA
1 GTCAATTAAGT-AAAAAAAATA-TAATTTTA-TGAAAAACAAACATTTAAATTTATATTCTTGGA
* *
14985393 TCTAAAAATATTTAACGATATATAAATTTTAATTTTAAAATAAAAAATAATAA-AGCTAAAAATA
63 GCTAAAAGTATTTAACGATATATAAATTTTAATTTTAAAATAAAAAATAATAATA-C-AAAAATA
* * * * * * *
14985457 ATTATATTTAAAAGTTACCATTGAAAAG-CTTTGATGAAAAAG-TATAAGAATTAACATAAAAAC
126 ATTATAGTTAAAAGTTACAATTGAAAAGTC-TTGA-CATAAAGCTGTAAGAATTTACGTAAAAAC
* *
14985520 CTATAAAGGTGAAACAAGCAAATTTAAAAT
189 TTATAAAGGTGGAACAAGCAAA-TTAAAAT
14985550 TCTAACGTAG
Statistics
Matches: 1781, Mismatches: 326, Indels: 195
0.77 0.14 0.08
Matches are distributed among these distances:
480 2 0.00
481 100 0.06
482 82 0.05
483 6 0.00
484 156 0.09
485 1 0.00
487 30 0.02
489 2 0.00
490 3 0.00
492 3 0.00
493 122 0.07
494 10 0.01
495 5 0.00
496 2 0.00
498 7 0.00
499 128 0.07
500 135 0.08
501 147 0.08
502 215 0.12
503 103 0.06
504 105 0.06
505 4 0.00
506 178 0.10
507 210 0.12
508 25 0.01
ACGTcount: A:0.49, C:0.08, G:0.11, T:0.32
Consensus pattern (495 bp):
GTCAATTAAGTAAAAAAAATATAATTTTATGAAAAACAAACATTTAAATTTATATTCTTGGAGCT
AAAAGTATTTAACGATATATAAATTTTAATTTTAAAATAAAAAATAATAATACAAAAATAATTAT
AGTTAAAAGTTACAATTGAAAAGTCTTGACATAAAGCTGTAAGAATTTACGTAAAAACTTATAAA
GGTGGAACAAGCAAATTAAAATCTTAATGTAAATGTGTGAGAGTTAATGTAACAAATCAATTAAG
TAAAAAAATATAATTTTAATGAAAAACAAACATTTAAATTTATATTCTCGACAAAATATTTAACA
TATACAAATTTTAATTTTAAAATAAATAATAATAAGGATAAAAATAATTATAGCTAAAAGTTGCG
ATTAAATGTTTTAATGTAAAACAGTAAGAATTAACATAAAAACTCATAAAGGTGGAACAAACAAT
TTAAAATCCTAATGTAAATGTGTGACAATTAATGTAACAT
Found at i:14987809 original size:252 final size:249
Alignment explanation
Indices: 14987004--14988392 Score: 1238
Period size: 252 Copynumber: 5.6 Consensus size: 249
14986994 AATGATTAAA
* * * *
14987004 AGTTAACATAACAAGTCAA-T---TAAAAGAATCTAATTCTAATG-AAAGCAAAT-TTTAAATTT
1 AGTTAACGTAACAAGTCAATTAAGTAAAAAAATCTAATTTTAATGAAAAACAAATATTTAAATTT
* * ** * ** * * *
14987063 AGAATCTTAGGCTAAAAGTGTTTAACAATATAAAAATTTTAATTTTAAGATAAAGAATAATAAGA
66 ATATTCTCGGGCTAAAAGTATTTAATGATATACAAATTTTAATTTTAAAATAAAGAATAATAAGG
* * * *
14987128 ATGAAAATAATTATAGTTAAAAGTTACCATTGAAAAGCTTTGATGTAAAACTGTAAGAATTGACG
131 ATAAAAATAATTATAGTTAAAAGTTACCATTGAAAA-CCTTGACGTAAAAGTGTAAGAATTGACG
* * *
14987193 TAAAAACTTATAACA-GTGAAAGAAACAAATTTAAAAT-TTAACGTAAATGTG--TG
195 T-AAAACTTATAA-AGGTGGAACAAGCAAATTTAAAATCTTAACGTAAATGTGTATG
* * * * * * *
14987246 AGTTAACGT-A-AAGTCAAGTAAGTCACAAAATTCTACTTTTTATGAAAAACAAATATTGAACTT
1 AGTTAACGTAACAAGTCAATTAAGT-AAAAAAATCTAATTTTAATGAAAAACAAATATTTAAATT
* *
14987309 TATATTCTCAAGG-TAAAAGTATTCAATGATATACAAATTTTAATTTTAAAATAAA-AATAATAA
65 TATATTCTC-GGGCTAAAAGTATTTAATGATATACAAATTTTAATTTTAAAATAAAGAATAATAA
* * *** * * *
14987372 GGATAAAAATAACTATAGTTAAAATTTACCATTAGAGGGCCTTGACCTAAAATTGTAAGAATGGA
129 GGATAAAAATAATTATAGTTAAAAGTTACCATT-GAAAACCTTGACGTAAAAGTGTAAGAATTGA
* ** * ** * * * *
14987437 TGTACAAACTTATAAATATGGAACAAGTAAAAATCACATCTTAACATAAATGTTTGA-G
193 CGTA-AAACTTATAAAGGTGGAACAAGCAAATTTAAAATCTTAACGTAAATGTGT-ATG
* * * * * * * *
14987495 AGTTAATGCAATAGGTCAATTAAGTAAAATAAATATAATTTTAATTAAGAATAAATATTTAAATT
1 AGTTAACGTAACAAGTCAATTAAGTAAAA-AAATCTAATTTTAATGAAAAACAAATATTTAAATT
** * * *
14987560 TATATTCTCGGGCTAAAAGTATTTAATGATATACAAATTTTGGTTTTAAAAGAAAGAATACTAAT
65 TATATTCTCGGGCTAAAAGTATTTAATGATATACAAATTTTAATTTTAAAATAAAGAATAATAAG
* * * * **
14987625 GATAAAAATAATTATAATTAAAAGGTGCTATTGAATAACCTTGACGTAAAAGTGTGGGAATTGAC
130 GATAAAAATAATTATAGTTAAAAGTTACCATTGAA-AACCTTGACGTAAAAGTGTAAGAATTGAC
* *
14987690 ATAAAGA-TATATAAAGGTGGAACAAGCAAATTTAAAATCTTAACGTAAATGTGTATA
194 GTAAA-ACT-TATAAAGGTGGAACAAGCAAATTTAAAATCTTAACGTAAATGTGTATG
* * * * * *
14987747 AGTTAAGGTAACAAGTTAACTAAGTCACAAAATTCTAATTTTAATGAAAAACAAACATTTAAATT
1 AGTTAACGTAACAAGTCAATTAAGT-AAAAAAATCTAATTTTAATGAAAAACAAATATTTAAATT
* * * * *
14987812 TATATTATCGGGTTAAAAGTATTTAATGATATATAAA-TTTAATTTT-AAATAAAGAAGAATAAT
65 TATATTCTCGGGCTAAAAGTATTTAATGATATACAAATTTTAATTTTAAAATAAAGAATAATAAG
* * * * *
14987875 GATAAAAATAATTATAGTTAAAATTTACCATTGAAACCCTTTA-ATATAAAGCTGTAAGAGTTGA
130 GATAAAAATAATTATAGTTAAAAGTTACCATTGAAAACCTTGACGTA-AAAG-TGTAAGAATTGA
* * * * * * * * *
14987939 TGTGAAACATATAATGGTAGACCAAGCAAATTTGAAATCCTAGA-GTAAATATGTGA-G
193 CGTAAAACTTATAAAGGTGGAACAAGCAAATTTAAAATCTTA-ACGTAAATGTGT-ATG
* * * * * * * *
14987996 AGCTAATGTAACATGTCAAAT-A--AAAAAAATATAATTTCAATGAAAAATAAACATTTAAATTT
1 AGTTAACGTAACAAGTCAATTAAGTAAAAAAATCTAATTTTAATGAAAAACAAATATTTAAATTT
* * * * * *
14988058 ACATTCACAAGGG--AAAAATATTTAATGATATGCAAAATTTTAATTTTAAAATAAAAAATAAGA
66 ATATTCTC--GGGCTAAAAGTATTTAATGATATAC-AAATTTTAATTTTAAAATAAAGAATAATA
* * *
14988121 AAGATAAGAATAATTATAGTTAAAAGTTACC-TTCGAAAAGCCTTGATGT-AAAGTTGTAAGAAT
128 AGGATAAAAATAATTATAGTTAAAAGTTACCATT-GAAAA-CCTTGACGTAAAAG-TGTAAGAAT
* *
14988184 TGACGTAAAAACTTATAAAGGTGGAATAAGCAAATTTAAAATCTTAACGTAAAGGTGTGA-G
190 TGACGT-AAAACTTATAAAGGTGGAACAAGCAAATTTAAAATCTTAACGTAAATGTGT-ATG
* * * * * *
14988245 AGTTAACATAATAAGTTAATTATGTAAAAAAATCTAATTTTAATGAAAAATAAATATTTATATTT
1 AGTTAACGTAACAAGTCAATTAAGTAAAAAAATCTAATTTTAATGAAAAACAAATATTTAAATTT
*
14988310 ATATTCTC-GACTTAAAA-TATTTAATGATATACAAATTTTAATTTTAAAATAAAGAATAATAAG
66 ATATTCTCGGGC-TAAAAGTATTTAATGATATACAAATTTTAATTTTAAAATAAAGAATAATAAG
*
14988373 GATAAATATAATTATAGTTA
130 GATAAAAATAATTATAGTTA
14988393 GCACCCTAGC
Statistics
Matches: 909, Mismatches: 192, Indels: 84
0.77 0.16 0.07
Matches are distributed among these distances:
240 7 0.01
241 2 0.00
242 8 0.01
244 1 0.00
245 73 0.08
246 94 0.10
247 76 0.08
248 68 0.07
249 134 0.15
250 111 0.12
251 111 0.12
252 221 0.24
253 3 0.00
ACGTcount: A:0.48, C:0.08, G:0.13, T:0.32
Consensus pattern (249 bp):
AGTTAACGTAACAAGTCAATTAAGTAAAAAAATCTAATTTTAATGAAAAACAAATATTTAAATTT
ATATTCTCGGGCTAAAAGTATTTAATGATATACAAATTTTAATTTTAAAATAAAGAATAATAAGG
ATAAAAATAATTATAGTTAAAAGTTACCATTGAAAACCTTGACGTAAAAGTGTAAGAATTGACGT
AAAACTTATAAAGGTGGAACAAGCAAATTTAAAATCTTAACGTAAATGTGTATG
Found at i:14988107 original size:498 final size:501
Alignment explanation
Indices: 14987090--14988392 Score: 1454
Period size: 498 Copynumber: 2.6 Consensus size: 501
14987080 GTGTTTAACA
* *
14987090 ATATA-AAAATTTTAATTTTAAGATAAAGAATAATAAGAATGAAAATAATTATAGTTAAAAGTTA
1 ATATACAAAATTTTAATTTTAAAATAAAGAATAATAAG-ATAAAAATAATTATAGTTAAAAGTTA
* * * * * *
14987154 CCATTGAAAAGCTTTGATGTAAAACTGTAAGAATTGACGTAAAAACTTATAACA-GTGAAAGAAA
65 CTATTGAAAAGCCTTGATGTAAAAGTGTAAGAATTGACGTAAAAACTTATAA-AGGTGGAACAAG
* *
14987218 CAAATTTAAAAT-TTAACGTAAATGTG--TGAGTTAACGT-AAAGTCAAGTAAGTCACAAAATTC
129 CAAATTTAAAATCTTAACGTAAATGTGTATGAGTTAACGTAAAAGTTAACTAAGTCACAAAATTC
* * * * * *
14987279 TACTTTTTATGAAAAACAAATATTGAACTTTATATTCTCAAGG-TAAAAGTATTCAATGATATAC
194 TAATTTTAATGAAAAACAAATATTTAAATTTATATTCTC-GGGTTAAAAGTATTTAATGATATAC
*
14987343 AAATTTTAATTTTAAAATAAA-AATAATAAGGATAAAAATAACTATAGTTAAAATTTACCATTAG
258 AAATTTTAATTTTAAAATAAAGAATAATAAGGATAAAAATAATTATAGTTAAAATTTACCATTAG
*** * * * * *
14987407 AGGGCCTTGACCTAAAATTGTAAGAATGGATGTACAAACTTATAAATATGGAACAAGTAAAAATC
323 AAACCCTTGACATAAAACTGTAAGAATGGATGTACAAACATATAAATATAGAACAAGCAAAAATC
* * * * * * * *
14987472 ACATCTTAACATAAATGTTTGAGAGTTAATGCAATAGGTCAATTAAGTAAAATAAATATAATTTT
388 AAATCCTAACATAAATATGTGAGAGCTAATGCAACAGGTCAA-TAAGTAAAAAAAATATAATTTC
* * * * * *
14987537 AATTAAGAATAAATATTTAAATTTATATTCTCGGGCTAAAAGTATTTAATG
452 AATGAAAAATAAACATTTAAATTTACATTCACGGGC-AAAAATATTTAATG
** * * * * *
14987588 ATATAC-AAATTTTGGTTTTAAAAGAAAGAATACTAATGATAAAAATAATTATAATTAAAAGGTG
1 ATATACAAAATTTTAATTTTAAAATAAAGAATAATAA-GATAAAAATAATTATAGTTAAAAGTTA
* ** * *
14987652 CTATTGAATAA-CCTTGACGTAAAAGTGTGGGAATTGACATAAAGA-TATATAAAGGTGGAACAA
65 CTATTGAA-AAGCCTTGATGTAAAAGTGTAAGAATTGACGTAAAAACT-TATAAAGGTGGAACAA
* *
14987715 GCAAATTTAAAATCTTAACGTAAATGTGTATAAGTTAAGGTAACAAGTTAACTAAGTCACAAAAT
128 GCAAATTTAAAATCTTAACGTAAATGTGTATGAGTTAACGTAA-AAGTTAACTAAGTCACAAAAT
* *
14987780 TCTAATTTTAATGAAAAACAAACATTTAAATTTATATTATCGGGTTAAAAGTATTTAATGATATA
192 TCTAATTTTAATGAAAAACAAATATTTAAATTTATATTCTCGGGTTAAAAGTATTTAATGATATA
* * *
14987845 TAAA-TTTAATTTT-AAATAAAGAAGAATAATGATAAAAATAATTATAGTTAAAATTTACCATT-
257 CAAATTTTAATTTTAAAATAAAGAATAATAAGGATAAAAATAATTATAGTTAAAATTTACCATTA
* * * * * *
14987907 GAAACCCTTTA-ATATAAAGCTGTAAGAGTTGATGT-GAAACATAT-AATGGTAGACCAAGCAAA
322 GAAACCCTTGACATA-AAA-CTGTAAGAATGGATGTACAAACATATAAAT-ATAGAACAAGCAAA
** * * * *
14987969 TTTGAAATCCTAGA-GTAAATATGTGAGAGCTAATGTAACATGTC-A-AA-TAAAAAAAATATAA
384 AATCAAATCCTA-ACATAAATATGTGAGAGCTAATGCAACAGGTCAATAAGTAAAAAAAATATAA
14988030 TTTCAATGAAAAATAAACATTTAAATTTACATTCACAAGGG-AAAAATATTTAATG
448 TTTCAATGAAAAATAAACATTTAAATTTACATTCAC--GGGCAAAAATATTTAATG
* * * *
14988085 ATATGCAAAATTTTAATTTTAAAATAAAAAATAAGAAAGATAAGAATAATTATAGTTAAAAGTTA
1 ATATACAAAATTTTAATTTTAAAATAAAGAATAA-TAAGATAAAAATAATTATAGTTAAAAGTTA
* *
14988150 CCT-TCGAAAAGCCTTGATGT-AAAGTTGTAAGAATTGACGTAAAAACTTATAAAGGTGGAATAA
65 -CTATTGAAAAGCCTTGATGTAAAAG-TGTAAGAATTGACGTAAAAACTTATAAAGGTGGAACAA
* * * * *
14988213 GCAAATTTAAAATCTTAACGTAAAGGTGTGA-GAGTTAACATAATAAGTTAATTATGT-AAAAAA
128 GCAAATTTAAAATCTTAACGTAAATGTGT-ATGAGTTAACGTAA-AAGTTAACTAAGTCACAAAA
* * * **
14988276 ATCTAATTTTAATGAAAAATAAATATTTATATTTATATTCTCGACTTAAAA-TATTTAATGATAT
191 TTCTAATTTTAATGAAAAACAAATATTTAAATTTATATTCTCGGGTTAAAAGTATTTAATGATAT
*
14988340 ACAAATTTTAATTTTAAAATAAAGAATAATAAGGATAAATATAATTATAGTTA
256 ACAAATTTTAATTTTAAAATAAAGAATAATAAGGATAAAAATAATTATAGTTA
14988393 GCACCCTAGC
Statistics
Matches: 671, Mismatches: 107, Indels: 54
0.81 0.13 0.06
Matches are distributed among these distances:
496 17 0.03
497 127 0.19
498 282 0.42
499 26 0.04
500 6 0.01
501 73 0.11
502 64 0.10
503 76 0.11
ACGTcount: A:0.48, C:0.07, G:0.13, T:0.32
Consensus pattern (501 bp):
ATATACAAAATTTTAATTTTAAAATAAAGAATAATAAGATAAAAATAATTATAGTTAAAAGTTAC
TATTGAAAAGCCTTGATGTAAAAGTGTAAGAATTGACGTAAAAACTTATAAAGGTGGAACAAGCA
AATTTAAAATCTTAACGTAAATGTGTATGAGTTAACGTAAAAGTTAACTAAGTCACAAAATTCTA
ATTTTAATGAAAAACAAATATTTAAATTTATATTCTCGGGTTAAAAGTATTTAATGATATACAAA
TTTTAATTTTAAAATAAAGAATAATAAGGATAAAAATAATTATAGTTAAAATTTACCATTAGAAA
CCCTTGACATAAAACTGTAAGAATGGATGTACAAACATATAAATATAGAACAAGCAAAAATCAAA
TCCTAACATAAATATGTGAGAGCTAATGCAACAGGTCAATAAGTAAAAAAAATATAATTTCAATG
AAAAATAAACATTTAAATTTACATTCACGGGCAAAAATATTTAATG
Found at i:14989001 original size:249 final size:249
Alignment explanation
Indices: 14988524--14989167 Score: 549
Period size: 249 Copynumber: 2.6 Consensus size: 249
14988514 ACCTCGACGT
* * * ** *
14988524 AAACTATAAGAATTAACATAAAAAATTCATAGAAG-TGAAACAAGTGAATTTAAAATCCTAATAT
1 AAACTATAAGAATTAACGTAAAAAA-TCATA-AAGACGGAACAAGCAAATTTAAAATCCTAACAT
* * * * * * ** ** *
14988588 AAATTTATGA-AAGCTAAGGA-AACATGTTAATTAATTAAAAAAAAATCTTTTTTTTGTTAA-AA
64 AAATGTGTGAGGA-TTAA-CATAACATGTCAATTAAGGAAAAAAAAATC--TAATTT-TAAAGAA
* * * *
14988650 ACAAACATTTAAATTCATATTGTCAAGCTAAAAGTATTCAATGATATACAAATCTTAATTTTAAA
124 AAAAACATTTAAATTTATATTGTCAAGCAAAAAGTATTCAACGATATACAAATCTTAATTTTAAA
* * * *
14988715 ATAAAGAAAAATAAGGATAAAAAAATTTTTGGTTAAAA-GTTGGCT-TTGAAAAGCCTTGACGTA
189 ATAAAGAAAAATAAAGAT-AAAAAATTTTTAGTTAAAAGGTT--CTATTGAAAAGCC-TAACATA
** * * * * *
14988778 AAGTTCTAAGAATTAATGTAAAAAATCATAAAGACGGAA-TAG-ACATTTAAAATCTTAACATAA
1 AAACTATAAGAATTAACGTAAAAAATCATAAAGACGGAACAAGCAAATTTAAAATCCTAACATAA
** * *
14988841 ATGTGTG-GGTATTAACATAACA-GTTCAATTAA-GTCATAAAATTCTAATTTTAAAGAAAAATA
66 ATGTGTGAGG-ATTAACATAACATG-TCAATTAAGGAAAAAAAAATCTAATTTTAAAGAAAAA-A
* * * *
14988903 ACATTTAAATTTATA-TGCTCAAGCAAAAAGTATTTAACGATTTACAATTTTTAATTTTAAAATA
128 ACATTTAAATTTATATTG-TCAAGCAAAAAGTATTCAACGATATACAAATCTTAATTTTAAAATA
* ** * *
14988967 AATAATTATAAAGCT-AAAAATTATTATAGTTAAAAGGTTCTATTTAAAAGCCTAACATA
192 AAGAAAAATAAAGATAAAAAATT-TT-TAGTTAAAAGGTTCTATTGAAAAGCCTAACATA
* ** **
14989026 AAACTATAAGAATTAGCGTAAAAGCTCATAAAGGTGGAACAAGCAAATTTAAAATCCTAACATAA
1 AAACTATAAGAATTAACGTAAAAAATCATAAAGACGGAACAAGCAAATTTAAAATCCTAACATAA
* * * * *
14989091 ATGTGTGAGGGTTAACGTAATATGTCAATTAAGGAAAAAAAAATCTAATTTTAATGAAAAAAAAA
66 ATGTGTGAGGATTAACATAACATGTCAATTAAGGAAAAAAAAATCTAATTTTAAAGAAAAAAACA
14989156 TTTAAATTTATA
131 TTTAAATTTATA
14989168 CTAAGGAGAG
Statistics
Matches: 309, Mismatches: 64, Indels: 38
0.75 0.16 0.09
Matches are distributed among these distances:
247 10 0.03
248 49 0.16
249 84 0.27
250 70 0.23
251 62 0.20
252 6 0.02
253 8 0.03
254 20 0.06
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.32
Consensus pattern (249 bp):
AAACTATAAGAATTAACGTAAAAAATCATAAAGACGGAACAAGCAAATTTAAAATCCTAACATAA
ATGTGTGAGGATTAACATAACATGTCAATTAAGGAAAAAAAAATCTAATTTTAAAGAAAAAAACA
TTTAAATTTATATTGTCAAGCAAAAAGTATTCAACGATATACAAATCTTAATTTTAAAATAAAGA
AAAATAAAGATAAAAAATTTTTAGTTAAAAGGTTCTATTGAAAAGCCTAACATA
Found at i:14989163 original size:23 final size:22
Alignment explanation
Indices: 14989119--14989165 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
14989109 AATATGTCAA
14989119 TTAAGGAAAAAAAAATCTAATT
1 TTAAGGAAAAAAAAATCTAATT
* * *
14989141 TTAATGAAAAAAAAATTTAAAT
1 TTAAGGAAAAAAAAATCTAATT
14989163 TTA
1 TTA
14989166 TACTAAGGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32
Consensus pattern (22 bp):
TTAAGGAAAAAAAAATCTAATT
Found at i:14994110 original size:16 final size:16
Alignment explanation
Indices: 14994089--14994123 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
14994079 TGAATCATTA
14994089 ATGGCTAAATCAATTG
1 ATGGCTAAATCAATTG
14994105 ATGGCTAAATCAATTG
1 ATGGCTAAATCAATTG
14994121 ATG
1 ATG
14994124 AGGCATATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.31
Consensus pattern (16 bp):
ATGGCTAAATCAATTG
Found at i:14995030 original size:14 final size:14
Alignment explanation
Indices: 14995013--14995042 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
14995003 AGGATCCAAG
14995013 CAACTTTACTATTT
1 CAACTTTACTATTT
14995027 CAACTTTACTATTT
1 CAACTTTACTATTT
14995041 CA
1 CA
14995043 TGCACAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.23, G:0.00, T:0.47
Consensus pattern (14 bp):
CAACTTTACTATTT
Found at i:15003600 original size:20 final size:20
Alignment explanation
Indices: 15003562--15003599 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
15003552 TCCTTTTTCT
15003562 TTCTTTTTCTCTGATTTTTG
1 TTCTTTTTCTCTGATTTTTG
15003582 TTCTTTTTCTCT-ATTTTT
1 TTCTTTTTCTCTGATTTTT
15003600 TTCCCAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.05, C:0.16, G:0.05, T:0.74
Consensus pattern (20 bp):
TTCTTTTTCTCTGATTTTTG
Found at i:15006238 original size:21 final size:21
Alignment explanation
Indices: 15006214--15006253 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
15006204 ATACTTCAAG
15006214 AATTCAAAG-ATCGACTTCTTA
1 AATTCAAAGAATCGA-TTCTTA
*
15006235 AATTCTAAGAATCGATTCT
1 AATTCAAAGAATCGATTCT
15006254 CAAGAAGAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (21 bp):
AATTCAAAGAATCGATTCTTA
Found at i:15009215 original size:27 final size:27
Alignment explanation
Indices: 15009177--15009230 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
15009167 ATTCAAATTT
15009177 TGGTGTCTAGACCATAATGAAGAACTA
1 TGGTGTCTAGACCATAATGAAGAACTA
15009204 TGGTGTCTAGACCATAATGAAGAACTA
1 TGGTGTCTAGACCATAATGAAGAACTA
15009231 ACACCTTGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (27 bp):
TGGTGTCTAGACCATAATGAAGAACTA
Found at i:15014087 original size:29 final size:29
Alignment explanation
Indices: 15014029--15014093 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 29
15014019 TTTTCCAAAG
* * *
15014029 TACTTATGTTTTAAATGGAATTTTCTAAT
1 TACTTATGTTTTAAATGGAAGTGTCCAAT
*
15014058 TACTTATGTTTTAAAT-TAAGTGTCACAAT
1 TACTTATGTTTTAAATGGAAGTGTC-CAAT
15014087 TAACTTA
1 T-ACTTA
15014094 AGTATAATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
28 5 0.17
29 20 0.67
30 5 0.17
ACGTcount: A:0.34, C:0.09, G:0.09, T:0.48
Consensus pattern (29 bp):
TACTTATGTTTTAAATGGAAGTGTCCAAT
Found at i:15015434 original size:20 final size:20
Alignment explanation
Indices: 15015411--15015449 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
15015401 TTTTTATGTA
15015411 ACAAAGATGGCTAATATTTG
1 ACAAAGATGGCTAATATTTG
15015431 ACAAAGATGGCTAATATTT
1 ACAAAGATGGCTAATATTT
15015450 AGGCAGTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ACAAAGATGGCTAATATTTG
Found at i:15021627 original size:73 final size:73
Alignment explanation
Indices: 15021490--15021627 Score: 177
Period size: 73 Copynumber: 1.9 Consensus size: 73
15021480 CAGTCGACTA
* * * *
15021490 AGAGCTTACTACCAAAAATCGAGTTCAAAGACAAAAATGACTTAATCGACTAAGAAGTATTGTTA
1 AGAGCTTACTACCAAAAATCGAGTTCAAAGACAAAAACGACTTAATCAACTAAGAAGCAATGTTA
15021555 GTCAATTG
66 GTCAATTG
* * * * * * *
15021563 AGAGCTTATTGCCAAAAATTGAGTTTAGAGACAAAAACGATTTAATCAACTAAGTAGCAATGTTA
1 AGAGCTTACTACCAAAAATCGAGTTCAAAGACAAAAACGACTTAATCAACTAAGAAGCAATGTTA
15021628 ATTGACTAAG
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
73 54 1.00
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.27
Consensus pattern (73 bp):
AGAGCTTACTACCAAAAATCGAGTTCAAAGACAAAAACGACTTAATCAACTAAGAAGCAATGTTA
GTCAATTG
Found at i:15024535 original size:12 final size:12
Alignment explanation
Indices: 15024518--15024565 Score: 51
Period size: 13 Copynumber: 3.7 Consensus size: 12
15024508 CTCATGTGTG
15024518 TATTATTTTATT
1 TATTATTTTATT
*
15024530 TATTATTATTGTTT
1 TATTATT-TT-ATT
15024544 ATATTATTTTATT
1 -TATTATTTTATT
15024557 TATTTATTT
1 TA-TTATTT
15024566 GACCTAACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
12 9 0.30
13 10 0.33
14 4 0.13
15 7 0.23
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (12 bp):
TATTATTTTATT
Found at i:15024555 original size:17 final size:17
Alignment explanation
Indices: 15024524--15024564 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 17
15024514 TGTGTATTAT
15024524 TTTATTTATTATTATTG
1 TTTATTTATTATTATTG
*
15024541 TTTA--TATTATT-TTA
1 TTTATTTATTATTATTG
15024555 TTTATTTATT
1 TTTATTTATT
15024565 TGACCTAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
14 6 0.29
15 7 0.33
16 4 0.19
17 4 0.19
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (17 bp):
TTTATTTATTATTATTG
Found at i:15024625 original size:2 final size:2
Alignment explanation
Indices: 15024618--15024648 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
15024608 TACTCATTGT
15024618 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
15024649 TATCTTTCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15024753 original size:2 final size:2
Alignment explanation
Indices: 15024746--15024770 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
15024736 AGTTTTCTTT
15024746 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
15024771 TTATGTTCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15024940 original size:2 final size:2
Alignment explanation
Indices: 15024933--15024962 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
15024923 TAATTAAAAT
15024933 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15024963 CACACACACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:15024954 original size:157 final size:156
Alignment explanation
Indices: 15024793--15025090 Score: 501
Period size: 157 Copynumber: 1.9 Consensus size: 156
15024783 CCTAAACTAA
*
15024793 ATATATACT-CACACACACACACACACACACACATGCTCTCAATTACTATTATTATTCCTATTAT
1 ATATATA-TACACACACACACACACACACACACATGCTCTCAATTACTATTATCATTCCTATTAT
*
15024857 TACTAATATTATTTTAACCACTAACTTCAAATAAATA-TAAAATCAAACCTTTTAAATAATAAAG
65 TACTAATATTATTTTAACCACTAACTTCAAATAAA-ACTAAAAACAAACCTTTTAAATAATAAA-
15024921 CCTAATTAAAATTATATATATATATATAT
128 CCTAATTAAAATTATATATATATATATAT
* * *
15024950 ATATATATATATACACACACACACACACACATATGCTCTCAATTACTATTATCATTCCTATTATT
1 ATATATATACACACACACACACACACACACACATGCTCTCAATTACTATTATCATTCCTATTATT
*
15025015 ACTAATATTATTTTAACCACTAACTTGAAATAAAACTAAAAACAAACCTTTTAAATAATAAACCT
66 ACTAATATTATTTTAACCACTAACTTCAAATAAAACTAAAAACAAACCTTTTAAATAATAAACCT
15025080 AATTAAAATTA
131 AATTAAAATTA
15025091 AACTAACAAG
Statistics
Matches: 133, Mismatches: 6, Indels: 5
0.92 0.04 0.03
Matches are distributed among these distances:
156 16 0.12
157 117 0.88
ACGTcount: A:0.45, C:0.19, G:0.01, T:0.34
Consensus pattern (156 bp):
ATATATATACACACACACACACACACACACACATGCTCTCAATTACTATTATCATTCCTATTATT
ACTAATATTATTTTAACCACTAACTTCAAATAAAACTAAAAACAAACCTTTTAAATAATAAACCT
AATTAAAATTATATATATATATATAT
Found at i:15025128 original size:30 final size:33
Alignment explanation
Indices: 15025085--15025151 Score: 90
Period size: 30 Copynumber: 2.2 Consensus size: 33
15025075 AACCTAATTA
15025085 AAAT-TAAACTAACAAGT-TAAA-CAGCCCAAT-
1 AAATATAAACTAACAA-TATAAACCAGCCCAATG
15025115 AAATATAAA-TAACAATATAAACCAGCCCAATG
1 AAATATAAACTAACAATATAAACCAGCCCAATG
15025147 AAATA
1 AAATA
15025152 ACCTAAACAA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
29 1 0.03
30 14 0.42
31 13 0.39
32 5 0.15
ACGTcount: A:0.57, C:0.18, G:0.06, T:0.19
Consensus pattern (33 bp):
AAATATAAACTAACAATATAAACCAGCCCAATG
Found at i:15025831 original size:26 final size:26
Alignment explanation
Indices: 15025784--15025841 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
15025774 TTTTTTTAGA
*
15025784 TTTTTTTTTGAAAGCTCGCTTTTGTCG
1 TTTTTTTTTGAAAGCTCCCTTTT-TCG
* * *
15025811 TTTTTTTTTGGAA-TTCCCTTTTTGG
1 TTTTTTTTTGAAAGCTCCCTTTTTCG
15025836 TTTTTT
1 TTTTTT
15025842 CGATCTCTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 8 0.30
26 7 0.26
27 12 0.44
ACGTcount: A:0.09, C:0.12, G:0.16, T:0.64
Consensus pattern (26 bp):
TTTTTTTTTGAAAGCTCCCTTTTTCG
Found at i:15026060 original size:15 final size:15
Alignment explanation
Indices: 15026042--15026071 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
15026032 TTTTTTTGAA
15026042 TTTTTCTATTTTTTC
1 TTTTTCTATTTTTTC
*
15026057 TTTTTTTATTTTTTC
1 TTTTTCTATTTTTTC
15026072 CAAAATATTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.10, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTCTATTTTTTC
Found at i:15027170 original size:17 final size:19
Alignment explanation
Indices: 15027144--15027182 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
15027134 AAATTAAAAT
*
15027144 AAAGTGTTGAA-CAAAAGA
1 AAAGTGTTGAAGAAAAAGA
15027162 AAAGT-TTGAAGAAAAAGA
1 AAAGTGTTGAAGAAAAAGA
15027180 AAA
1 AAA
15027183 AGGAGCTACT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.62, C:0.03, G:0.21, T:0.15
Consensus pattern (19 bp):
AAAGTGTTGAAGAAAAAGA
Found at i:15028336 original size:29 final size:29
Alignment explanation
Indices: 15028273--15028367 Score: 102
Period size: 29 Copynumber: 3.2 Consensus size: 29
15028263 ATCAAGCAAT
* *
15028273 AACCCATGGTTTTTAA-TGGATTCAACCACA
1 AACCCATGGTTTTCAACAGG-TTC-ACCACA
* *
15028303 CACCCATGGTTTTCAACAGGTTCACCATA
1 AACCCATGGTTTTCAACAGGTTCACCACA
* * *
15028332 AACCCGTTGTTTTCAACAAGTTCACCACA
1 AACCCATGGTTTTCAACAGGTTCACCACA
15028361 AACCCAT
1 AACCCAT
15028368 ACTAACTTTT
Statistics
Matches: 54, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
29 35 0.65
30 17 0.31
31 2 0.04
ACGTcount: A:0.32, C:0.29, G:0.12, T:0.27
Consensus pattern (29 bp):
AACCCATGGTTTTCAACAGGTTCACCACA
Found at i:15028851 original size:23 final size:24
Alignment explanation
Indices: 15028824--15028868 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
15028814 ATAGCTTCAT
15028824 CAAGGTCGACTAT-GGCATTATTC
1 CAAGGTCGACTATAGGCATTATTC
* *
15028847 CAAGGTTGACTATAGGCTTTAT
1 CAAGGTCGACTATAGGCATTAT
15028869 GGGGTCAACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (24 bp):
CAAGGTCGACTATAGGCATTATTC
Found at i:15030642 original size:23 final size:22
Alignment explanation
Indices: 15030616--15030660 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
15030606 CAGAAGCCTA
*
15030616 ATAAATACTAGAAAGAAAGCTTG
1 ATAAA-ACAAGAAAGAAAGCTTG
* *
15030639 ATAAAGCAAGTAAGAAAGCTTG
1 ATAAAACAAGAAAGAAAGCTTG
15030661 TTATCTTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.51, C:0.09, G:0.20, T:0.20
Consensus pattern (22 bp):
ATAAAACAAGAAAGAAAGCTTG
Found at i:15041678 original size:11 final size:11
Alignment explanation
Indices: 15041662--15041686 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
15041652 GTGTCGAGAT
15041662 ATAGGCAAAAA
1 ATAGGCAAAAA
15041673 ATAGGCAAAAA
1 ATAGGCAAAAA
15041684 ATA
1 ATA
15041687 TCATAAGACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.08, G:0.16, T:0.12
Consensus pattern (11 bp):
ATAGGCAAAAA
Found at i:15065186 original size:22 final size:22
Alignment explanation
Indices: 15065161--15065206 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
15065151 AAGACTATAA
15065161 TAGTCTCCTCGATAAAGCACTC
1 TAGTCTCCTCGATAAAGCACTC
* *
15065183 TAGTCTCTTCTATAAAGCACTC
1 TAGTCTCCTCGATAAAGCACTC
15065205 TA
1 TA
15065207 CTTCTACAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.33
Consensus pattern (22 bp):
TAGTCTCCTCGATAAAGCACTC
Found at i:15065482 original size:47 final size:47
Alignment explanation
Indices: 15065317--15065480 Score: 267
Period size: 47 Copynumber: 3.5 Consensus size: 47
15065307 TGCAAACAAG
* *
15065317 TTTACTTAACAAATAAGTAAAATAATTATA-CTATGCATTTTATAAAT
1 TTTACCTAACAAATAAGTAAAATAATTACATC-ATGCATTTTATAAAT
15065364 TTTACCTAACAAATAAGTAAAATAATTACATCATGCATTTTATAAAT
1 TTTACCTAACAAATAAGTAAAATAATTACATCATGCATTTTATAAAT
* * *
15065411 TTTACCTAACAAATAAGTAAAATCAGTACATCATGCTTTTTATAAAT
1 TTTACCTAACAAATAAGTAAAATAATTACATCATGCATTTTATAAAT
15065458 TTTACCTAACAAATAAGTAAAAT
1 TTTACCTAACAAATAAGTAAAAT
15065481 CATACAAAAT
Statistics
Matches: 111, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
47 110 0.99
48 1 0.01
ACGTcount: A:0.46, C:0.12, G:0.05, T:0.37
Consensus pattern (47 bp):
TTTACCTAACAAATAAGTAAAATAATTACATCATGCATTTTATAAAT
Found at i:15066507 original size:21 final size:21
Alignment explanation
Indices: 15066478--15066556 Score: 79
Period size: 21 Copynumber: 3.8 Consensus size: 21
15066468 GAGATAGGAT
*
15066478 ATTATATTTAAATTTAAACAA
1 ATTAAATTTAAATTTAAACAA
* **
15066499 ATTAAATTTAAATAT-AATTA
1 ATTAAATTTAAATTTAAACAA
**
15066519 ATCTTTATTTAAATTTAAACAA
1 AT-TAAATTTAAATTTAAACAA
*
15066541 ATTAAACTTAAATTTA
1 ATTAAATTTAAATTTA
15066557 TATCTTATCT
Statistics
Matches: 44, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
20 5 0.11
21 34 0.77
22 5 0.11
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (21 bp):
ATTAAATTTAAATTTAAACAA
Found at i:15066555 original size:27 final size:27
Alignment explanation
Indices: 15066500--15066556 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
15066490 TTTAAACAAA
* * *
15066500 TTAAATTTAAATATAATTAATCTTTAT
1 TTAAATTTAAACATAATTAAACTTAAT
15066527 TTAAATTTAAACA-AATTAAACTTAAAT
1 TTAAATTTAAACATAATTAAACTT-AAT
15066554 TTA
1 TTA
15066557 TATCTTATCT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 9 0.35
27 17 0.65
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (27 bp):
TTAAATTTAAACATAATTAAACTTAAT
Found at i:15067004 original size:15 final size:15
Alignment explanation
Indices: 15066981--15067019 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
15066971 CAAGGAATGA
*
15066981 TAACGTGACAATTGC
1 TAACATGACAATTGC
*
15066996 TAACTTGACAATTGC
1 TAACATGACAATTGC
15067011 TAACATGAC
1 TAACATGAC
15067020 TACTAATGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (15 bp):
TAACATGACAATTGC
Found at i:15067945 original size:10 final size:10
Alignment explanation
Indices: 15067932--15067956 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
15067922 TTTTCCCCCT
15067932 TCTTCCTCTC
1 TCTTCCTCTC
15067942 TCTTCCTCTC
1 TCTTCCTCTC
15067952 TCTTC
1 TCTTC
15067957 TTGAAAATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (10 bp):
TCTTCCTCTC
Found at i:15070972 original size:29 final size:29
Alignment explanation
Indices: 15070925--15071119 Score: 218
Period size: 29 Copynumber: 6.7 Consensus size: 29
15070915 TTAAGACAAC
* *
15070925 TCTTGTCTTTAATTAAGACAAAACATGTTA
1 TCTTGTC-TAAATTAAGACAAAACATGTTT
*
15070955 TCTTGTCTAAATTGAGAC-AAACATGTTTT
1 TCTTGTCTAAATTAAGACAAAACATG-TTT
* *
15070984 TCTTGTCTAGAA-TAAGACAACATAT-TTT
1 TCTTGTCTA-AATTAAGACAAAACATGTTT
* * *
15071012 TCTTGTCTTAATTTAAGA-TAAATATGTTT
1 TCTTGTC-TAAATTAAGACAAAACATGTTT
*
15071041 TCTTGTCTAAATTAAAACAAAACATGTTT
1 TCTTGTCTAAATTAAGACAAAACATGTTT
* *
15071070 TCTTATCTTAAATTAAGACAAAACATATTT
1 TCTTGTC-TAAATTAAGACAAAACATGTTT
15071100 TCTTGTCTAAATTAAGACAA
1 TCTTGTCTAAATTAAGACAA
15071120 TCATGCAAAA
Statistics
Matches: 140, Mismatches: 17, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
28 31 0.22
29 70 0.50
30 39 0.28
ACGTcount: A:0.37, C:0.13, G:0.09, T:0.41
Consensus pattern (29 bp):
TCTTGTCTAAATTAAGACAAAACATGTTT
Found at i:15071088 original size:87 final size:86
Alignment explanation
Indices: 15070925--15071119 Score: 236
Period size: 86 Copynumber: 2.2 Consensus size: 86
15070915 TTAAGACAAC
* * *
15070925 TCTTGTCTTTAATTAAGACAAAACATGTTATCTTGTCTAAATTGAGACAAACATGTTTTTCTTGT
1 TCTTGTC-TTAATTAAGACAAAACATGTTATCTTGTCTAAATTAAAACAAACATGTTTTTCTTAT
15070990 CTAGAATAAGAC-AACATATTTT
65 CTAGAATAAGACAAACATA-TTT
* * *
15071012 TCTTGTCTTAATTTAAGA-TAAATATGTTTTCTTGTCTAAATTAAAACAAAACATG-TTTTCTTA
1 TCTTGTCTTAA-TTAAGACAAAACATGTTATCTTGTCTAAATTAAAAC-AAACATGTTTTTCTTA
15071075 TCTTA-AATTAAGACAAAACATATTT
64 TC-TAGAA-TAAGAC-AAACATATTT
*
15071100 TCTTGTCTAAATTAAGACAA
1 TCTTGTCTTAATTAAGACAA
15071120 TCATGCAAAA
Statistics
Matches: 93, Mismatches: 8, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
86 39 0.42
87 34 0.37
88 14 0.15
89 6 0.06
ACGTcount: A:0.37, C:0.13, G:0.09, T:0.41
Consensus pattern (86 bp):
TCTTGTCTTAATTAAGACAAAACATGTTATCTTGTCTAAATTAAAACAAACATGTTTTTCTTATC
TAGAATAAGACAAACATATTT
Found at i:15077496 original size:58 final size:57
Alignment explanation
Indices: 15077394--15077554 Score: 144
Period size: 58 Copynumber: 2.8 Consensus size: 57
15077384 TTATTTTTAA
* * * *
15077394 TTAAGACAAAACATATTATCTTATCTAAATTGAGACCAATATGTTTTCTTGTCTGGG
1 TTAAGAAAAAACATATTATCTTATCTAAATTAAGACAAACATGTTTTCTTGTCTGGG
* * * ***
15077451 TTAAGAAAAAATATATTTTCATT-TCTTAAATTAAGACAAACATGTTTTGTTGTCTAAA
1 TTAAGAAAAAACATATTATC-TTATC-TAAATTAAGACAAACATGTTTTCTTGTCTGGG
* * * * * *
15077509 TTAAGAGAAAACATGTTTTTTTGTCTAAATTAATACAAAACATGTT
1 TTAAGAAAAAACATATTATCTTATCTAAATTAAGAC-AAACATGTT
15077555 AAAGTTGTCA
Statistics
Matches: 85, Mismatches: 15, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
57 31 0.36
58 54 0.64
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.40
Consensus pattern (57 bp):
TTAAGAAAAAACATATTATCTTATCTAAATTAAGACAAACATGTTTTCTTGTCTGGG
Found at i:15077510 original size:28 final size:28
Alignment explanation
Indices: 15077477--15077554 Score: 111
Period size: 29 Copynumber: 2.7 Consensus size: 28
15077467 TTTCATTTCT
15077477 TAAATTAAGACAAACATGTTTTGTTGTC
1 TAAATTAAGACAAACATGTTTTGTTGTC
* *
15077505 TAAATTAAGAGAAAACATGTTTTTTTGTC
1 TAAATTAAGA-CAAACATGTTTTGTTGTC
*
15077534 TAAATTAATACAAAACATGTT
1 TAAATTAAGAC-AAACATGTT
15077555 AAAGTTGTCA
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 10 0.23
29 34 0.77
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.38
Consensus pattern (28 bp):
TAAATTAAGACAAACATGTTTTGTTGTC
Found at i:15078521 original size:35 final size:36
Alignment explanation
Indices: 15078482--15078706 Score: 251
Period size: 35 Copynumber: 6.4 Consensus size: 36
15078472 TTAATTGTTT
* * *
15078482 AATTTAATCAATTAAGCCTAATAATTTAATTAAAC-
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAACA
*
15078517 AATTTAATCAATTAGGCCCAATAACTTGATTAAACA
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAACA
*
15078553 AATTTAATTAATTAGGCCCAATAACTTAATTAAAC-
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAACA
*
15078588 AATTTAATCAATTAGGCCCAATAACCTAATTAAACA
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAACA
* * * * ****
15078624 AATTTAATCAGTTAGACCTAATAATTTAATT-GTTT
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAACA
* * * *
15078659 AACTTAATTAATCAGGCCCAATGACTTAATTAAAC-
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAACA
*
15078694 AATTTAATGAATT
1 AATTTAATCAATT
15078707 TGACACAACT
Statistics
Matches: 156, Mismatches: 31, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
35 97 0.62
36 59 0.38
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.35
Consensus pattern (36 bp):
AATTTAATCAATTAGGCCCAATAACTTAATTAAACA
Found at i:15078566 original size:71 final size:71
Alignment explanation
Indices: 15078482--15078706 Score: 283
Period size: 71 Copynumber: 3.2 Consensus size: 71
15078472 TTAATTGTTT
*
15078482 AATTTAATCAATTAAGCCTAATAATTTAATTAAACAATTTAATCAATTAGGCCCAATAACTTGAT
1 AATTTAATCAATTAAGCCTAATAATTTAATTAAACAATTTAATCAATTAGGCCCAATAACTTAAT
15078547 TAAACA
66 TAAACA
* * * * *
15078553 AATTTAATTAATTAGGCCCAATAACTTAATTAAACAATTTAATCAATTAGGCCCAATAACCTAAT
1 AATTTAATCAATTAAGCCTAATAATTTAATTAAACAATTTAATCAATTAGGCCCAATAACTTAAT
15078618 TAAACA
66 TAAACA
* **** * * * *
15078624 AATTTAATCAGTT-AGACCTAATAATTTAATTGTTTAACTTAATTAATCAGGCCCAATGACTTAA
1 AATTTAATCAATTAAG-CCTAATAATTTAATTAAACAATTTAATCAATTAGGCCCAATAACTTAA
15078688 TTAAAC-
65 TTAAACA
*
15078694 AATTTAATGAATT
1 AATTTAATCAATT
15078707 TGACACAACT
Statistics
Matches: 131, Mismatches: 22, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
70 12 0.09
71 119 0.91
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.35
Consensus pattern (71 bp):
AATTTAATCAATTAAGCCTAATAATTTAATTAAACAATTTAATCAATTAGGCCCAATAACTTAAT
TAAACA
Found at i:15078666 original size:106 final size:106
Alignment explanation
Indices: 15078482--15078706 Score: 281
Period size: 106 Copynumber: 2.1 Consensus size: 106
15078472 TTAATTGTTT
* ** * *
15078482 AATTTAATCAATTAAGCCTAATAATTTAATTAAACAATTTAATCAATTAGGCCCAATAACTTGAT
1 AATTTAATCAATTAAGCCCAATAACCTAATTAAACAATTTAATCAATTAGACCCAATAACTTAAT
* *
15078547 TAAACAAATTTAATTAATTAGGCCCAATAACTTAATTAAAC
66 TAAACAAACTTAATTAATCAGGCCCAATAACTTAATTAAAC
* * * *
15078588 AATTTAATCAATTAGGCCCAATAACCTAATTAAACAAATTTAATCAGTTAGACCTAATAATTTAA
1 AATTTAATCAATTAAGCCCAATAACCTAATTAAAC-AATTTAATCAATTAGACCCAATAACTTAA
**** *
15078653 TT-GTTTAACTTAATTAATCAGGCCCAATGACTTAATTAAAC
65 TTAAACAAACTTAATTAATCAGGCCCAATAACTTAATTAAAC
*
15078694 AATTTAATGAATT
1 AATTTAATCAATT
15078707 TGACACAACT
Statistics
Matches: 101, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
106 75 0.74
107 26 0.26
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.35
Consensus pattern (106 bp):
AATTTAATCAATTAAGCCCAATAACCTAATTAAACAATTTAATCAATTAGACCCAATAACTTAAT
TAAACAAACTTAATTAATCAGGCCCAATAACTTAATTAAAC
Found at i:15086863 original size:17 final size:16
Alignment explanation
Indices: 15086815--15086867 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
15086805 TCAAACAACC
* * *
15086815 AAAATTAAAGATAGCG
1 AAAATTAAAGAAAACT
15086831 AAAATTAAAGAAAACT
1 AAAATTAAAGAAAACT
*
15086847 AAAATTAAACTAAAACT
1 AAAATTAAA-GAAAACT
15086864 AAAA
1 AAAA
15086868 ACAAGAACTA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
16 22 0.69
17 10 0.31
ACGTcount: A:0.66, C:0.08, G:0.08, T:0.19
Consensus pattern (16 bp):
AAAATTAAAGAAAACT
Found at i:15090460 original size:66 final size:68
Alignment explanation
Indices: 15090389--15090571 Score: 228
Period size: 68 Copynumber: 2.7 Consensus size: 68
15090379 TCTCATGTAA
* * *
15090389 TATATGGAATCTACATCATACACACATTCTCATGGCATTCATCATGCATAC-T-ATCA-CTTCAT
1 TATATGGAATTTACATCATACACACAATCTTATGGCATTCATCATGCATACTTAATCATCTT-AT
15090451 AAGG
65 AAGG
** * *
15090455 TATATGGAATTTGGATCATACACACAATCTTATGGAATTCATCTTGCATACTTAATCATCTTATA
1 TATATGGAATTTACATCATACACACAATCTTATGGCATTCATCATGCATACTTAATCATCTTATA
15090520 AGG
66 AGG
* * * * *
15090523 TATATGGAATTTACAACAAATACACAATCTTATGCCATTCACCATGCAT
1 TATATGGAATTTACATCATACACACAATCTTATGGCATTCATCATGCAT
15090572 TTTTTGGAGA
Statistics
Matches: 98, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
66 44 0.45
67 1 0.01
68 50 0.51
69 3 0.03
ACGTcount: A:0.35, C:0.21, G:0.11, T:0.33
Consensus pattern (68 bp):
TATATGGAATTTACATCATACACACAATCTTATGGCATTCATCATGCATACTTAATCATCTTATA
AGG
Found at i:15094987 original size:59 final size:59
Alignment explanation
Indices: 15094882--15094993 Score: 179
Period size: 59 Copynumber: 1.9 Consensus size: 59
15094872 CGTAATCATC
*
15094882 CAAAGTAGTTTGCATGTGATAGATTTATTTTATACAATTTAATAAATGCTATGTAAGTG
1 CAAAGTAGTATGCATGTGATAGATTTATTTTATACAATTTAATAAATGCTATGTAAGTG
* * * *
15094941 CAAATTAGTATGCATGTGATAGATTTATTTTATGCGATTTAGTAAATGCTATG
1 CAAAGTAGTATGCATGTGATAGATTTATTTTATACAATTTAATAAATGCTATG
15094994 CCTGTAAAGA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
59 48 1.00
ACGTcount: A:0.34, C:0.07, G:0.18, T:0.41
Consensus pattern (59 bp):
CAAAGTAGTATGCATGTGATAGATTTATTTTATACAATTTAATAAATGCTATGTAAGTG
Found at i:15101358 original size:24 final size:25
Alignment explanation
Indices: 15101301--15101364 Score: 71
Period size: 24 Copynumber: 2.6 Consensus size: 25
15101291 TAACAAAGTG
*
15101301 AGAAGAGAAAGGGA-GAAAGAAAGAA
1 AGAA-AGAAAGGGAGGAAAAAAAGAA
*
15101326 AGGAA-AAAGGGAGGAAAAAAAGAA
1 AGAAAGAAAGGGAGGAAAAAAAGAA
*
15101350 A-AAAGAAAGGAAGGA
1 AGAAAGAAAGGGAGGA
15101365 TCGGCTTAGT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
23 9 0.27
24 21 0.64
25 3 0.09
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (25 bp):
AGAAAGAAAGGGAGGAAAAAAAGAA
Found at i:15101360 original size:20 final size:20
Alignment explanation
Indices: 15101314--15101361 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
15101304 AGAGAAAGGG
* *
15101314 AGAAA-GAAAGAAAGGAAAA
1 AGAAAGGAAAAAAAGAAAAA
**
15101333 AGGGAGGAAAAAAAGAAAAA
1 AGAAAGGAAAAAAAGAAAAA
15101353 AGAAAGGAA
1 AGAAAGGAA
15101362 GGATCGGCTT
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
19 3 0.14
20 19 0.86
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (20 bp):
AGAAAGGAAAAAAAGAAAAA
Found at i:15113240 original size:19 final size:19
Alignment explanation
Indices: 15113195--15113244 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 19
15113185 TCTAACTTTC
*
15113195 TTTCTTTTTTTT-GAATTT
1 TTTCTTTTTTTTAAAATTT
***
15113213 TTAAATTTTTTTAAAATTT
1 TTTCTTTTTTTTAAAATTT
15113232 TTTCTTTTTTTTA
1 TTTCTTTTTTTTA
15113245 TTTTCACTTT
Statistics
Matches: 24, Mismatches: 7, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
18 9 0.38
19 15 0.62
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.74
Consensus pattern (19 bp):
TTTCTTTTTTTTAAAATTT
Found at i:15135513 original size:76 final size:77
Alignment explanation
Indices: 15135433--15135597 Score: 233
Period size: 76 Copynumber: 2.1 Consensus size: 77
15135423 TCAATTTCTC
* * *
15135433 AAATTAAAATACTATCCTTAATTTTAGGAATTTCTTTTAAAGTAGGAAACAATTTCCTA-TTTTT
1 AAATTAAAATACTATCCTTAATTTTAGGAATTACTTTCAAAGTAGAAAACAATTTCCTATTTTTT
15135497 ATGAATCACCCA
66 ATGAATCACCCA
* * *
15135509 AAATTAAAATTCTATCCTTAATTTTAGGAATTACTTTCAAAGTAGAAAATAATTTCGTATTTTTT
1 AAATTAAAATACTATCCTTAATTTTAGGAATTACTTTCAAAGTAGAAAACAATTTCCTA-TTTTT
* **
15135574 TTTGAATCACTTA
65 TATGAATCACCCA
15135587 AAATTAAAATA
1 AAATTAAAATA
15135598 GATGGTATTT
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
76 53 0.69
78 24 0.31
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.41
Consensus pattern (77 bp):
AAATTAAAATACTATCCTTAATTTTAGGAATTACTTTCAAAGTAGAAAACAATTTCCTATTTTTT
ATGAATCACCCA
Found at i:15141706 original size:16 final size:18
Alignment explanation
Indices: 15141679--15141716 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
15141669 TTTCTCTTTT
15141679 CTTTTTTCTCCTCTC-TC
1 CTTTTTTCTCCTCTCTTC
*
15141696 CTTTTTT-TCCTTTCTTC
1 CTTTTTTCTCCTCTCTTC
15141713 CTTT
1 CTTT
15141717 CTCATTTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (18 bp):
CTTTTTTCTCCTCTCTTC
Found at i:15141732 original size:23 final size:23
Alignment explanation
Indices: 15141663--15141741 Score: 74
Period size: 23 Copynumber: 3.4 Consensus size: 23
15141653 TAGGCCAAAC
*
15141663 CTTCACTTTCTCTTTTC-TTTTTT
1 CTTC-CTTTCTCATTTCTTTTTTT
* *
15141686 C-TCCTCTCTCCTTT-TTTTCCTTT
1 CTTCCTTTCTCATTTCTTTT--TTT
15141709 CTTCCTTTCTCATTTCTTTTTTT
1 CTTCCTTTCTCATTTCTTTTTTT
*
15141732 CTTCTTTTCT
1 CTTCCTTTCT
15141742 TGCTTTGCTT
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
21 12 0.26
22 2 0.04
23 17 0.37
24 11 0.24
25 4 0.09
ACGTcount: A:0.03, C:0.30, G:0.00, T:0.67
Consensus pattern (23 bp):
CTTCCTTTCTCATTTCTTTTTTT
Found at i:15141747 original size:9 final size:8
Alignment explanation
Indices: 15141669--15141752 Score: 50
Period size: 8 Copynumber: 10.9 Consensus size: 8
15141659 AAACCTTCAC
15141669 TTTC-TCT
1 TTTCTTCT
15141676 TTTCTT-T
1 TTTCTTCT
*
15141683 TTTC-TCC
1 TTTCTTCT
* *
15141690 TCTCTCCT
1 TTTCTTCT
* *
15141698 TTTTTTCC
1 TTTCTTCT
*
15141706 TTTCTTCC
1 TTTCTTCT
*
15141714 TTTC-TCA
1 TTTCTTCT
*
15141721 TTTCTTTT
1 TTTCTTCT
15141729 TTTCTTCT
1 TTTCTTCT
15141737 TTTCTTGCT
1 TTTCTT-CT
*
15141746 TTGCTTC
1 TTTCTTC
15141753 CCAGCCGAAT
Statistics
Matches: 58, Mismatches: 14, Indels: 9
0.72 0.17 0.11
Matches are distributed among these distances:
6 1 0.02
7 18 0.31
8 32 0.55
9 7 0.12
ACGTcount: A:0.01, C:0.29, G:0.02, T:0.68
Consensus pattern (8 bp):
TTTCTTCT
Found at i:15145372 original size:18 final size:18
Alignment explanation
Indices: 15145349--15145385 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
15145339 TTGTTCTTCA
15145349 AAAGTTAACCCTTCATCT
1 AAAGTTAACCCTTCATCT
15145367 AAAGTTAACCCTTCATCT
1 AAAGTTAACCCTTCATCT
15145385 A
1 A
15145386 GAGGAACCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.27, G:0.05, T:0.32
Consensus pattern (18 bp):
AAAGTTAACCCTTCATCT
Found at i:15154540 original size:28 final size:28
Alignment explanation
Indices: 15154508--15154564 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
15154498 AATTTCATCC
**
15154508 AAAAATTTTGTCA-AAAATCCATTGGAAA
1 AAAAATTCCGTCAGAAAATCCATT-GAAA
*
15154536 AAAAATTCCGTCAGCAAATCCATTGAAA
1 AAAAATTCCGTCAGAAAATCCATTGAAA
15154564 A
1 A
15154565 TTTCCAACAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 16 0.64
29 9 0.36
ACGTcount: A:0.49, C:0.16, G:0.11, T:0.25
Consensus pattern (28 bp):
AAAAATTCCGTCAGAAAATCCATTGAAA
Found at i:15156029 original size:144 final size:144
Alignment explanation
Indices: 15155767--15156050 Score: 387
Period size: 144 Copynumber: 2.0 Consensus size: 144
15155757 GTTAAAGAGC
*
15155767 ATTTCATACATGTAGATAATTCCATACAATCCTTGAACAAAGTTAACAATACTATATGCTAGTAT
1 ATTTCATACATGTAGATAATTCCATACAATCCTTGAACAAAATTAACAATACTATATGCTAGTAT
* **
15155832 GCATTTGTAGGTATCTGTGATGGTACAGGCAATTGTTATGCACAAAAGCTAACATCAAATAATTG
66 GCATTTGTAGATATCTGTGACCGTACAGGCAATTGTTATGCACAAAAGCTAACATCAAATAATTG
*
15155897 TAATTGTCAAGCTA
131 AAATTGTCAAGCTA
* * * *
15155911 ATTTCATACATGTTGATAA-TCCTATACAATTCTTGAACAAAATTAA-GATGACTATCTGCT-GA
1 ATTTCATACATGTAGATAATTCC-ATACAATCCTTGAACAAAATTAACAAT-ACTATATGCTAG-
* * *
15155973 TATGCATTTGTAGATATTTGTGACCGTAGAGGCAATTGTTAT-CTACAAAAGTTAACATCAAATA
63 TATGCATTTGTAGATATCTGTGACCGTACAGGCAATTGTTATGC-ACAAAAGCTAACATCAAATA
*
15156037 GTTGAAATTGTCAA
127 ATTGAAATTGTCAA
15156051 ATTGCTTATA
Statistics
Matches: 123, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
143 7 0.06
144 116 0.94
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (144 bp):
ATTTCATACATGTAGATAATTCCATACAATCCTTGAACAAAATTAACAATACTATATGCTAGTAT
GCATTTGTAGATATCTGTGACCGTACAGGCAATTGTTATGCACAAAAGCTAACATCAAATAATTG
AAATTGTCAAGCTA
Found at i:15158942 original size:17 final size:17
Alignment explanation
Indices: 15158906--15158953 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
15158896 AAAAAATGAC
* *
15158906 AAACAAATGAA-CATAG
1 AAACAAATAAATCATAA
**
15158922 AAACCCATAAATCATAA
1 AAACAAATAAATCATAA
15158939 AAACAAATAAATCAT
1 AAACAAATAAATCAT
15158954 TTACGATAAG
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
16 8 0.32
17 17 0.68
ACGTcount: A:0.62, C:0.17, G:0.04, T:0.17
Consensus pattern (17 bp):
AAACAAATAAATCATAA
Found at i:15166063 original size:14 final size:14
Alignment explanation
Indices: 15166046--15166082 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
15166036 GTTTATTCTA
15166046 TTTGGTTTTACTAT
1 TTTGGTTTTACTAT
15166060 TTTGGTTTTACTAT
1 TTTGGTTTTACTAT
15166074 TTTGGTTTT
1 TTTGGTTTT
15166083 CTTTTTACTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.11, C:0.05, G:0.16, T:0.68
Consensus pattern (14 bp):
TTTGGTTTTACTAT
Found at i:15168070 original size:25 final size:25
Alignment explanation
Indices: 15168030--15168088 Score: 91
Period size: 25 Copynumber: 2.4 Consensus size: 25
15168020 AAATCTCTCA
* *
15168030 TAAGCCCCCATCCTTTGCAAGCAGT
1 TAAGCCCCTATCCTTTGCAAGCAAT
*
15168055 TAAGCCCCTATTCTTTGCAAGCAAT
1 TAAGCCCCTATCCTTTGCAAGCAAT
15168080 TAAGCCCCT
1 TAAGCCCCT
15168089 TACCTGCCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.25, C:0.34, G:0.14, T:0.27
Consensus pattern (25 bp):
TAAGCCCCTATCCTTTGCAAGCAAT
Found at i:15182208 original size:20 final size:20
Alignment explanation
Indices: 15182172--15182209 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
15182162 CGGTGGGATG
*
15182172 TTTTGCTAGCAATTAGAATC
1 TTTTGCTAGCAACTAGAATC
15182192 TTTTGC-AGACAACTAGAA
1 TTTTGCTAG-CAACTAGAA
15182210 CTTCATCTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 2 0.12
20 14 0.88
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (20 bp):
TTTTGCTAGCAACTAGAATC
Found at i:15183232 original size:17 final size:17
Alignment explanation
Indices: 15183179--15183234 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 17
15183169 CTAAATTAAA
*
15183179 TAAAGAAAATAAAATTC
1 TAAATAAAATAAAATTC
** * *
15183196 TAAACCAACTAAAATAC
1 TAAATAAAATAAAATTC
*
15183213 TAAATAAAATAGAATTC
1 TAAATAAAATAAAATTC
15183230 TAAAT
1 TAAAT
15183235 GTGTCTGCAT
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.61, C:0.11, G:0.04, T:0.25
Consensus pattern (17 bp):
TAAATAAAATAAAATTC
Found at i:15186705 original size:14 final size:14
Alignment explanation
Indices: 15186673--15186711 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
15186663 ACACAACACA
*
15186673 ATAAATCTAAAAAG
1 ATAAATTTAAAAAG
15186687 A-AAATTTAAAAAG
1 ATAAATTTAAAAAG
15186700 ATAAA-TTAAAAA
1 ATAAATTTAAAAA
15186712 CTTAAAGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 19 0.83
14 4 0.17
ACGTcount: A:0.69, C:0.03, G:0.05, T:0.23
Consensus pattern (14 bp):
ATAAATTTAAAAAG
Found at i:15187982 original size:45 final size:45
Alignment explanation
Indices: 15187918--15188005 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
15187908 CATGGTGTGA
*
15187918 CACAATTGGCCCCAAAAGGTGCCAATAACATCCTGATGAGTGCGG
1 CACAATCGGCCCCAAAAGGTGCCAATAACATCCTGATGAGTGCGG
*
15187963 CACAATCGGCCCCAAAAGGTGCCAATTACATCCTGATGAGTGC
1 CACAATCGGCCCCAAAAGGTGCCAATAACATCCTGATGAGTGC
15188006 ACTGAACAGG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.31, C:0.28, G:0.23, T:0.18
Consensus pattern (45 bp):
CACAATCGGCCCCAAAAGGTGCCAATAACATCCTGATGAGTGCGG
Found at i:15195667 original size:17 final size:18
Alignment explanation
Indices: 15195635--15195669 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
15195625 CGCATTGTTA
15195635 ATATATAAAGAACAAAAAT
1 ATATATAAAG-ACAAAAAT
15195654 ATATATAAAG-CAAAAA
1 ATATATAAAGACAAAAA
15195670 GAATAAAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
19 10 0.62
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.20
Consensus pattern (18 bp):
ATATATAAAGACAAAAAT
Found at i:15196053 original size:2 final size:2
Alignment explanation
Indices: 15196046--15196080 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
15196036 ATTCTGAGTA
* *
15196046 AT AT AT AT AT AT AT AT AT AT GT AT AT AT TT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
15196081 CTTTGAGCAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
AT
Found at i:15196736 original size:51 final size:50
Alignment explanation
Indices: 15196682--15196846 Score: 210
Period size: 51 Copynumber: 3.3 Consensus size: 50
15196672 TTTCATTTCT
15196682 TTTTTTCCTTAGCTCAAATTTT-AGAATTATTTTTCTTTTC-TTTTTTCCC
1 TTTTTTCCTTAGCTCAAATTTTGA-AATTATTTTTCTTTTCTTTTTTTCCC
*
15196731 ATTTTTT-CTTAGCTCAAATTTTGAAATTATTTTTCTTTCCCTTTTTTTCCC
1 -TTTTTTCCTTAGCTCAAATTTTGAAATTATTTTTCTTT-TCTTTTTTTCCC
* * * * *
15196782 TATTTTCCTTAGCTCAAAATTTGAAATTAGTGTTCTTTTCTTTCTTTTTCCT
1 TTTTTTCCTTAGCTCAAATTTTGAAATTATTTTTCTTTTC-TT-TTTTTCCC
15196834 TTTTTTCCTTAGC
1 TTTTTTCCTTAGC
15196847 GCATCTAGGT
Statistics
Matches: 101, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
49 29 0.29
50 14 0.14
51 39 0.39
52 19 0.19
ACGTcount: A:0.17, C:0.19, G:0.05, T:0.59
Consensus pattern (50 bp):
TTTTTTCCTTAGCTCAAATTTTGAAATTATTTTTCTTTTCTTTTTTTCCC
Found at i:15198203 original size:23 final size:25
Alignment explanation
Indices: 15198161--15198210 Score: 77
Period size: 23 Copynumber: 2.1 Consensus size: 25
15198151 ATGAAGGCTT
15198161 ATTTGATTTAAAATAAAATACAAAA
1 ATTTGATTTAAAATAAAATACAAAA
*
15198186 ATTTGA-TT-AAATATAATACAAAA
1 ATTTGATTTAAAATAAAATACAAAA
15198209 AT
1 AT
15198211 AAAAATTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 16 0.67
24 2 0.08
25 6 0.25
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.34
Consensus pattern (25 bp):
ATTTGATTTAAAATAAAATACAAAA
Found at i:15199814 original size:3 final size:3
Alignment explanation
Indices: 15199806--15199839 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
15199796 ACTCTTCGCT
15199806 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
15199840 GATAAATTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:15201183 original size:6 final size:6
Alignment explanation
Indices: 15201172--15201218 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
15201162 TAAGCCTATA
* * *
15201172 TATATT TATATT TATA-T TATGTT TATCTC TATATTT TATATT TATAT
1 TATATT TATATT TATATT TATATT TATATT TATA-TT TATATT TATAT
15201219 CATGCTAAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
5 4 0.12
6 25 0.74
7 5 0.15
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (6 bp):
TATATT
Found at i:15201196 original size:11 final size:12
Alignment explanation
Indices: 15201172--15201218 Score: 51
Period size: 13 Copynumber: 3.9 Consensus size: 12
15201162 TAAGCCTATA
15201172 TATATTTATATT
1 TATATTTATATT
*
15201184 TATA-TTATGTT
1 TATATTTATATT
* *
15201195 TATCTCTATATTT
1 TATATTTATA-TT
15201208 TATATTTATAT
1 TATATTTATAT
15201219 CATGCTAAAG
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
11 9 0.33
12 8 0.30
13 10 0.37
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (12 bp):
TATATTTATATT
Found at i:15202306 original size:2 final size:2
Alignment explanation
Indices: 15202299--15202332 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
15202289 AAAGATCTTA
15202299 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
15202333 CCATATATCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:15223712 original size:23 final size:23
Alignment explanation
Indices: 15223686--15224135 Score: 120
Period size: 23 Copynumber: 19.6 Consensus size: 23
15223676 AATGAATTGT
15223686 GTGTCACATATTCTCACCATGGC
1 GTGTCACATATTCTCACCATGGC
*
15223709 GTGTCACATATT-TCCTCCATGGC
1 GTGTCACATATTCT-CACCATGGC
* * * **
15223732 GTGGCACATATACCCTTCATGGC
1 GTGTCACATATTCTCACCATGGC
* ** * * *
15223755 ATGTCATGTATTCTTACCGTTGC
1 GTGTCACATATTCTCACCATGGC
* * *
15223778 GTGCCACATATTC-CTTCCATGGT
1 GTGTCACATATTCTC-ACCATGGC
* ** **
15223801 GTGCCATGTATTCTCACCATGTT
1 GTGTCACATATTCTCACCATGGC
* * * * **
15223824 GTGGCACATATTCACTCAATGAT
1 GTGTCACATATTCTCACCATGGC
* ***
15223847 GTGTTACATATTCTCATTGTGGC
1 GTGTCACATATTCTCACCATGGC
* * * * ***
15223870 ATGTCACATATTCCCTCTAAACC
1 GTGTCACATATTCTCACCATGGC
*
15223893 ATGTCACATATTC-CATCCATGGC
1 GTGTCACATATTCTCA-CCATGGC
* * *
15223916 GTGTCACAT-TTTTC-CTTGATGGT
1 GTGTCACATATTCTCAC--CATGGC
* * * **
15223939 GTGCCTCATATTCTCACCGTCCC
1 GTGTCACATATTCTCACCATGGC
* * **
15223962 ATGTCACATATTCCCTTCATGGC
1 GTGTCACATATTCTCACCATGGC
* * *
15223985 GTGTCACATATTTTCATCGTGGC
1 GTGTCACATATTCTCACCATGGC
* * * *
15224008 ATGTCACATATTCCCTCCATGGT
1 GTGTCACATATTCTCACCATGGC
* * * * *
15224031 ATGGCACACATTCCCTCCATGGC
1 GTGTCACATATTCTCACCATGGC
* * * *
15224054 ATGTCATATATTCTCACCGTGAC
1 GTGTCACATATTCTCACCATGGC
* * ***
15224077 ATAG-CACATATTCCCTTAATGGC
1 GT-GTCACATATTCTCACCATGGC
* * * *
15224100 ATGTCACATATTCTCACCGTCGT
1 GTGTCACATATTCTCACCATGGC
*
15224123 GTGTCACACATTC
1 GTGTCACATATTC
15224136 CCTCCAAGCT
Statistics
Matches: 297, Mismatches: 118, Indels: 24
0.68 0.27 0.05
Matches are distributed among these distances:
21 1 0.00
22 5 0.02
23 284 0.96
24 6 0.02
25 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.34
Consensus pattern (23 bp):
GTGTCACATATTCTCACCATGGC
Found at i:15224018 original size:69 final size:69
Alignment explanation
Indices: 15223847--15224022 Score: 192
Period size: 69 Copynumber: 2.6 Consensus size: 69
15223837 ACTCAATGAT
* * * *
15223847 GTGTTACATATTCTCATTGTGGCATGTCACATATTCCCTCTAAACCATGTCACATATTCCATCCA
1 GTGTCACATATTTTCATTGTGGCATGTCACATATTCCCACCAAACCATGTCACATATTCCATCCA
15223912 TGGC
66 TGGC
* ** * * * *** * *
15223916 GTGTCACAT-TTTTCCTTGATGGTGTGCCTCATATTCTCACCGTCCCATGTCACATATTCCCTTC
1 GTGTCACATATTTTCATTG-TGGCATGTCACATATTCCCACCAAACCATGTCACATATTCCATCC
15223980 ATGGC
65 ATGGC
*
15223985 GTGTCACATATTTTCATCGTGGCATGTCACATATTCCC
1 GTGTCACATATTTTCATTGTGGCATGTCACATATTCCC
15224023 TCCATGGTAT
Statistics
Matches: 83, Mismatches: 22, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
68 7 0.08
69 69 0.83
70 7 0.08
ACGTcount: A:0.20, C:0.28, G:0.15, T:0.36
Consensus pattern (69 bp):
GTGTCACATATTTTCATTGTGGCATGTCACATATTCCCACCAAACCATGTCACATATTCCATCCA
TGGC
Found at i:15224054 original size:46 final size:46
Alignment explanation
Indices: 15224004--15224141 Score: 159
Period size: 46 Copynumber: 3.0 Consensus size: 46
15223994 ATTTTCATCG
* * *
15224004 TGGCATGTCACATATTCCCTCCATGGTATGGCACACATTCCCTCCA
1 TGGCATGTCACATATTCTCACCGTGGTATGGCACACATTCCCTCCA
* ** * * **
15224050 TGGCATGTCATATATTCTCACCGTGACATAGCACATATTCCCTTAA
1 TGGCATGTCACATATTCTCACCGTGGTATGGCACACATTCCCTCCA
* * *
15224096 TGGCATGTCACATATTCTCACCGTCGTGTGTCACACATTCCCTCCA
1 TGGCATGTCACATATTCTCACCGTGGTATGGCACACATTCCCTCCA
15224142 AGCTATGTCA
Statistics
Matches: 72, Mismatches: 20, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
46 72 1.00
ACGTcount: A:0.23, C:0.32, G:0.14, T:0.30
Consensus pattern (46 bp):
TGGCATGTCACATATTCTCACCGTGGTATGGCACACATTCCCTCCA
Found at i:15224293 original size:23 final size:23
Alignment explanation
Indices: 15224267--15224414 Score: 77
Period size: 23 Copynumber: 6.4 Consensus size: 23
15224257 ACATATTTTT
15224267 TCCATGGCGTCTCACATATTCCC
1 TCCATGGCGTCTCACATATTCCC
* * * * *
15224290 TCCATGCCGTGTCATAAAGAT-CC
1 TCCATGGCGTCTCACATA-TTCCC
*
15224313 TCCATGGCGTGC-CACATATTCTC
1 TCCATGGCGT-CTCACATATTCCC
* * * **
15224336 ACTATGGTGTGC-CGTATATTCCC
1 TCCATGGCGT-CTCACATATTCCC
* * * *
15224359 TCTATTGCATCTCACATATTCAC
1 TCCATGGCGTCTCACATATTCCC
* * *
15224382 TACATGGCGTCTCATATATTCTC
1 TCCATGGCGTCTCACATATTCCC
*
15224405 ACCATGGCGT
1 TCCATGGCGT
15224415 GTTACGTAGG
Statistics
Matches: 89, Mismatches: 32, Indels: 8
0.69 0.25 0.06
Matches are distributed among these distances:
22 2 0.02
23 86 0.97
24 1 0.01
ACGTcount: A:0.21, C:0.31, G:0.16, T:0.32
Consensus pattern (23 bp):
TCCATGGCGTCTCACATATTCCC
Done.