Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397263.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_86.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8461613
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 85630 characters in sequence are not A, C, G, or T
File 17 of 18
Found at i:7611725 original size:13 final size:13
Alignment explanation
Indices: 7611704--7611740 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
7611694 AATATATAAT
*
7611704 TTTTGTTATTTTA
1 TTTTATTATTTTA
7611717 TTTTATTATTTTA
1 TTTTATTATTTTA
7611730 TTATTATTATT
1 TT-TTATTATT
7611741 ATATATATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 14 0.64
14 8 0.36
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.76
Consensus pattern (13 bp):
TTTTATTATTTTA
Found at i:7611777 original size:62 final size:63
Alignment explanation
Indices: 7611656--7611811 Score: 201
Period size: 62 Copynumber: 2.5 Consensus size: 63
7611646 AATATATTGA
* * *
7611656 TTATTATAATTATT-TTATTA-TATATATTAATAATAATAAATATATAATTTTTGTTATTTTATT
1 TTATTAT-TTTATTATTATTATTATATA-TATTAATAATAAATATATAATTATTGTTATTTTATT
*
7611719 TTATTATTTTATTATTATTATTATATATATTAATAATAAATATATCA-TATTGTTATTTTATT
1 TTATTATTTTATTATTATTATTATATATATTAATAATAAATATATAATTATTGTTATTTTATT
* * * *
7611781 TTGTTGTTTTTTTATTATTATTATATGTATT
1 TTATTATTTTATTATTATTATTATATATATT
7611812 TTTAATTGAC
Statistics
Matches: 83, Mismatches: 8, Indels: 5
0.86 0.08 0.05
Matches are distributed among these distances:
62 46 0.55
63 31 0.37
64 6 0.07
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.62
Consensus pattern (63 bp):
TTATTATTTTATTATTATTATTATATATATTAATAATAAATATATAATTATTGTTATTTTATT
Found at i:7614313 original size:36 final size:36
Alignment explanation
Indices: 7614266--7614339 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
7614256 GGAGTTGATA
7614266 CTGATGGTGCTAGAGCTACTCCAATTAATCCTCATG
1 CTGATGGTGCTAGAGCTACTCCAATTAATCCTCATG
* *
7614302 CTGATGGTGCTAGAGCTGCTCCAATTAATCCTCGTG
1 CTGATGGTGCTAGAGCTACTCCAATTAATCCTCATG
7614338 CT
1 CT
7614340 TCTTCCTCCC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.31
Consensus pattern (36 bp):
CTGATGGTGCTAGAGCTACTCCAATTAATCCTCATG
Found at i:7615217 original size:52 final size:52
Alignment explanation
Indices: 7615161--7615320 Score: 127
Period size: 52 Copynumber: 3.1 Consensus size: 52
7615151 AGCCAAATCA
*
7615161 TGAGCAATAAAGCTAGTGGCTGAAACGTTAATGATAAATTATGGTCAAAGAT
1 TGAGCGATAAAGCTAGTGGCTGAAACGTTAATGATAAATTATGGTCAAAGAT
* * * ** * *
7615213 TGAGCGATATACCT--T-GC--AACCAATAAT-ATAGTATCATTATAGTCAAATCA-
1 TGAGCGATAAAGCTAGTGGCTGAAACGTTAATGATA--A--ATTATGGTCAAA-GAT
* *
7615263 TGAGCGATAAAGCTAGCGGCTGAAATGTTAATGATAAATTATGGTCAAAGAT
1 TGAGCGATAAAGCTAGTGGCTGAAACGTTAATGATAAATTATGGTCAAAGAT
*
7615315 TAAGCG
1 TGAGCG
7615321 TTATAGCTTG
Statistics
Matches: 78, Mismatches: 18, Indels: 24
0.65 0.15 0.20
Matches are distributed among these distances:
46 3 0.04
47 7 0.09
48 1 0.01
49 2 0.03
50 24 0.31
51 2 0.03
52 27 0.35
53 2 0.03
54 1 0.01
55 6 0.08
56 3 0.04
ACGTcount: A:0.39, C:0.12, G:0.21, T:0.28
Consensus pattern (52 bp):
TGAGCGATAAAGCTAGTGGCTGAAACGTTAATGATAAATTATGGTCAAAGAT
Found at i:7615287 original size:102 final size:102
Alignment explanation
Indices: 7615130--7615380 Score: 342
Period size: 102 Copynumber: 2.5 Consensus size: 102
7615120 AAGCTTGTGG
* *
7615130 CCAATAACATAATATCATTATAGCCAAATCATGAGCAATAAAGCTAGTGGCTGAAACGTTAATGA
1 CCAATAATATAATATCATTATAGCCAAATCATGAGCAATAAAGCTAGCGGCTGAAACGTTAATGA
*
7615195 TAAATTATGGTCAAAGATTGAGCGATATACCTTGCAA
66 TAAATTATGGTCAAAGATTAAGCGATATACCTTGCAA
* * * *
7615232 CCAATAATATAGTATCATTATAGTCAAATCATGAGCGATAAAGCTAGCGGCTGAAATGTTAATGA
1 CCAATAATATAATATCATTATAGCCAAATCATGAGCAATAAAGCTAGCGGCTGAAACGTTAATGA
* * *
7615297 TAAATTATGGTCAAAGATTAAGCGTTATAGCTTGCGA
66 TAAATTATGGTCAAAGATTAAGCGATATACCTTGCAA
* * ** * *
7615334 CTAATAATATAATATAATTGCAGCCAAGAT-ATAAGCAATGAAGCTAG
1 CCAATAATATAATATCATTATAGCCAA-ATCATGAGCAATAAAGCTAG
7615381 TGGTTAAAAT
Statistics
Matches: 129, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
102 127 0.98
103 2 0.02
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (102 bp):
CCAATAATATAATATCATTATAGCCAAATCATGAGCAATAAAGCTAGCGGCTGAAACGTTAATGA
TAAATTATGGTCAAAGATTAAGCGATATACCTTGCAA
Found at i:7620275 original size:29 final size:29
Alignment explanation
Indices: 7620234--7620328 Score: 95
Period size: 29 Copynumber: 3.3 Consensus size: 29
7620224 GAGCTAATAA
*
7620234 AGAAAA-GTTGTACGTGAACAGGTACAAG
1 AGAAAAGGCTGTACGTGAACAGGTACAAG
* * * *
7620262 AGAGGAA-GCTGTACATGAATAGCTACAAG
1 AGA-AAAGGCTGTACGTGAACAGGTACAAG
* *
7620291 AGAAAAGGCTGTACGTGAACAAGTATAAG
1 AGAAAAGGCTGTACGTGAACAGGTACAAG
7620320 AGAACAAGG
1 AGAA-AAGG
7620329 AAAAAGCAAA
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
28 5 0.09
29 44 0.83
30 4 0.08
ACGTcount: A:0.44, C:0.12, G:0.28, T:0.16
Consensus pattern (29 bp):
AGAAAAGGCTGTACGTGAACAGGTACAAG
Found at i:7633656 original size:26 final size:26
Alignment explanation
Indices: 7633619--7633669 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
7633609 GTTTTCCTAA
7633619 AATGCCCATAAAATTTCTAAGAACTG
1 AATGCCCATAAAATTTCTAAGAACTG
*
7633645 AATGCCCCTAAAATTTCTAAGAACT
1 AATGCCCATAAAATTTCTAAGAACT
7633670 TCAACCCTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.41, C:0.22, G:0.10, T:0.27
Consensus pattern (26 bp):
AATGCCCATAAAATTTCTAAGAACTG
Found at i:7642575 original size:27 final size:26
Alignment explanation
Indices: 7642545--7642601 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
7642535 AATCAATAAT
*
7642545 AAACTAAACTAAAAGCAATTTAACA-TA
1 AAACTAAAATAAAA-CAATTTAA-ATTA
*
7642572 AAACTAAAATAAAATAATTTAAATTA
1 AAACTAAAATAAAACAATTTAAATTA
7642598 AAAC
1 AAAC
7642602 AACTGAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
25 1 0.04
26 13 0.48
27 13 0.48
ACGTcount: A:0.63, C:0.11, G:0.02, T:0.25
Consensus pattern (26 bp):
AAACTAAAATAAAACAATTTAAATTA
Found at i:7651906 original size:21 final size:21
Alignment explanation
Indices: 7651882--7651939 Score: 98
Period size: 21 Copynumber: 2.8 Consensus size: 21
7651872 ATTTTGAATA
7651882 AATGTATCGATACATTGAGGC
1 AATGTATCGATACATTGAGGC
7651903 AATGTATCGATACATTGAGGC
1 AATGTATCGATACATTGAGGC
* *
7651924 AATGAATTGATACATT
1 AATGTATCGATACATT
7651940 TCAGGCAGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (21 bp):
AATGTATCGATACATTGAGGC
Found at i:7652678 original size:80 final size:80
Alignment explanation
Indices: 7652590--7652811 Score: 227
Period size: 80 Copynumber: 2.8 Consensus size: 80
7652580 ATAACATTTC
** *
7652590 CATAAATCATCAT-CATACTTAGTTTATGGTGTATATGATTATCTCAACACATACATCTCATGAC
1 CATAAATCAT-ATGCATACTTAGCCTATAGTGTATATGATTATCTCAACACATACATCTCATGAC
*
7652654 ATAT-ATTTCATAACCT
65 AT-TCATTACATAACCT
* * * * * *
7652670 CATAAATCATTTGTATGCTTAGCCTATAGTGTATATGATTATCTCAACACATATATCTTATGGCA
1 CATAAATCATATGCATACTTAGCCTATAGTGTATATGATTATCTCAACACATACATCTCATGACA
7652735 TTCATTACATAACCT
66 TTCATTACATAACCT
* * * ** * *
7652750 CATAAATCACT-TACATGCTTAGCCCATAAAGTACATGA-TATACTTAACACATACATCTCATG
1 CATAAATCA-TATGCATACTTAGCCTATAGTGTATATGATTAT-CTCAACACATACATCTCATG
7652812 GTATACATGT
Statistics
Matches: 119, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
79 5 0.04
80 113 0.95
81 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.36
Consensus pattern (80 bp):
CATAAATCATATGCATACTTAGCCTATAGTGTATATGATTATCTCAACACATACATCTCATGACA
TTCATTACATAACCT
Found at i:7652832 original size:80 final size:79
Alignment explanation
Indices: 7652624--7652836 Score: 223
Period size: 80 Copynumber: 2.7 Consensus size: 79
7652614 TATGGTGTAT
* * * * **
7652624 ATGATTATCTCAACACATACATCTCATGACATATATTTCATAACCTCATAAATCATTTGTATGCT
1 ATGATTATCTCAACACATACATCTCATGGCATACATTT-ACAACCTCATAAATCACTTACATGCT
* ** *
7652689 TAGCCTATAGTGTAT
65 TAGCCCATAAAGTAC
* * *
7652704 ATGATTATCTCAACACATATATCTTATGGCATTCA-TTACATAACCTCATAAATCACTTACATGC
1 ATGATTATCTCAACACATACATCTCATGGCATACATTTAC--AACCTCATAAATCACTTACATGC
7652768 TTAGCCCATAAAGTAC
64 TTAGCCCATAAAGTAC
* * *
7652784 ATGA-TATACTTAACACATACATCTCATGGTATACATGTTACAATCTCATAAAT
1 ATGATTAT-CTCAACACATACATCTCATGGCATACAT-TTACAACCTCATAAAT
7652837 GGAACTCATG
Statistics
Matches: 109, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
78 1 0.01
79 5 0.05
80 99 0.91
82 4 0.04
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.35
Consensus pattern (79 bp):
ATGATTATCTCAACACATACATCTCATGGCATACATTTACAACCTCATAAATCACTTACATGCTT
AGCCCATAAAGTAC
Found at i:7658679 original size:20 final size:21
Alignment explanation
Indices: 7658653--7658700 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
7658643 GAAGAACATG
*
7658653 AATAGATGAGC-AGATTTATC
1 AATAGATGAGCTAGATCTATC
*
7658673 CATAGAT-AGCTAGATCTATC
1 AATAGATGAGCTAGATCTATC
7658693 AATAGATG
1 AATAGATG
7658701 GCTCCAATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 3 0.13
20 20 0.87
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (21 bp):
AATAGATGAGCTAGATCTATC
Found at i:7674726 original size:19 final size:20
Alignment explanation
Indices: 7674702--7674742 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
7674692 TGATAATTTT
7674702 CTTGATGA-TATATATATTG
1 CTTGATGAGTATATATATTG
* *
7674721 CTTGATGAGTATGTCTATTG
1 CTTGATGAGTATATATATTG
7674741 CT
1 CT
7674743 AGGTGTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.24, C:0.10, G:0.20, T:0.46
Consensus pattern (20 bp):
CTTGATGAGTATATATATTG
Found at i:7677487 original size:17 final size:17
Alignment explanation
Indices: 7677465--7677503 Score: 62
Period size: 17 Copynumber: 2.3 Consensus size: 17
7677455 AATTTTATTA
7677465 GAGCACATA-TTCAAGGG
1 GAGCACATACTT-AAGGG
7677482 GAGCACATACTTAAGGG
1 GAGCACATACTTAAGGG
7677499 GAGCA
1 GAGCA
7677504 ATCCTTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 19 0.90
18 2 0.10
ACGTcount: A:0.36, C:0.18, G:0.31, T:0.15
Consensus pattern (17 bp):
GAGCACATACTTAAGGG
Found at i:7682520 original size:15 final size:15
Alignment explanation
Indices: 7682500--7682529 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
7682490 AATAGACTAT
7682500 CATAAACAACTAAGC
1 CATAAACAACTAAGC
7682515 CATAAACAACTAAGC
1 CATAAACAACTAAGC
7682530 ATCATCAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.27, G:0.07, T:0.13
Consensus pattern (15 bp):
CATAAACAACTAAGC
Found at i:7685713 original size:73 final size:74
Alignment explanation
Indices: 7685599--7685771 Score: 206
Period size: 73 Copynumber: 2.4 Consensus size: 74
7685589 TTAATCAGCC
* ** * * * * * * *
7685599 AAGAGGCATTGTTAGTTAACTAAGAGCTTACTGCTAGAAACTAGGTTCAG-AGACAGAGATAACT
1 AAGAAGCATTGTTAGTCGACTAAGAGCTCACTACCAAAAACTAGGATCAGAAGACAGAAACAACT
7685663 TAATCGACT
66 TAATCGACT
* * *
7685672 AAGAAGCATTGTTAGTCGACTAAGAGCTCACTACCAAAAACTGGGATCAGAAGATAGAAACGACT
1 AAGAAGCATTGTTAGTCGACTAAGAGCTCACTACCAAAAACTAGGATCAGAAGACAGAAACAACT
7685737 TAATCGACT
66 TAATCGACT
*
7685746 AAGAAGTA-TGTTAGTCGACTAAGAGC
1 AAGAAGCATTGTTAGTCGACTAAGAGC
7685772 ATTCTGATTG
Statistics
Matches: 85, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
73 59 0.69
74 26 0.31
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (74 bp):
AAGAAGCATTGTTAGTCGACTAAGAGCTCACTACCAAAAACTAGGATCAGAAGACAGAAACAACT
TAATCGACT
Found at i:7699970 original size:18 final size:19
Alignment explanation
Indices: 7699937--7699972 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
7699927 NNNNNNNNNN
7699937 TTTTATTCATAAAATATTA
1 TTTTATTCATAAAATATTA
*
7699956 TTTTATTTA-AAAATATT
1 TTTTATTCATAAAATATT
7699973 CTTCTTACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (19 bp):
TTTTATTCATAAAATATTA
Found at i:7716486 original size:49 final size:48
Alignment explanation
Indices: 7716433--7716684 Score: 213
Period size: 49 Copynumber: 5.1 Consensus size: 48
7716423 TGTTGAGGAA
* * * * *
7716433 TATGTTCCATTCATGGATGATTATGGATAATGATATGATGTGGATTATG
1 TATGTTCCATCCGTAGATGATTCTGGATGATGATATGATGTGGA-TATG
* * * *
7716482 TATGTTCCGTCCGTAGATGATTCCGAATGATGATATGATGTAAGATATG
1 TATGTTCCATCCGTAGATGATTCTGGATGATGATATGATGT-GGATATG
* ** *** *
7716531 TATGTTCCGTTGGTAGATGATTCCAAATGATGATATGAAGTGAGATATG
1 TATGTTCCATCCGTAGATGATTCTGGATGATGATATGATGTG-GATATG
*
7716580 TATGTTCCATCCGTCA-ATGATT-TCGGATGATGATATGATGCGAGATATG
1 TATGTTCCATCCGT-AGATGATTCT-GGATGATGATATGATGTG-GATATG
* ** * *
7716629 CATGTTCCATGTGTAGATGATTTTGGATGATGATCA-GATGTGAGGTATG
1 TATGTTCCATCCGTAGATGATTCTGGATGATGAT-ATGATGTG-GATATG
7716678 TATGTTC
1 TATGTTC
7716685 TGTCCATGGA
Statistics
Matches: 168, Mismatches: 28, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
48 1 0.01
49 162 0.96
50 5 0.03
ACGTcount: A:0.27, C:0.10, G:0.26, T:0.37
Consensus pattern (48 bp):
TATGTTCCATCCGTAGATGATTCTGGATGATGATATGATGTGGATATG
Found at i:7716700 original size:98 final size:98
Alignment explanation
Indices: 7716434--7716716 Score: 288
Period size: 98 Copynumber: 2.9 Consensus size: 98
7716424 GTTGAGGAAT
** * *
7716434 ATGTTCCATTCATGGATGATTATGGATAATGATATGATGTG-GATTATGTATGTTCCGTCCGTAG
1 ATGTTCCATTGGTAGATGATTATGGATGATGATATGATGTGAGA-TATGTATGTTCCGTCCGTAG
* * * *
7716498 ATGATTCCGAATGATGATATGATGTAAGATATGT
65 ATGATTTCGGATGATGATATGATGCAAGATATGC
* **** * *
7716532 ATGTTCCGTTGGTAGATGATTCCAAATGATGATATGAAGTGAGATATGTATGTTCCATCCGTCA-
1 ATGTTCCATTGGTAGATGATTATGGATGATGATATGATGTGAGATATGTATGTTCCGTCCGT-AG
*
7716596 ATGATTTCGGATGATGATATGATGCGAGATATGC
65 ATGATTTCGGATGATGATATGATGCAAGATATGC
* * * * *
7716630 ATGTTCCA-TGTGTAGATGATTTTGGATGATGATCA-GATGTGAGGTATGTATGTTCTGTCCATG
1 ATGTTCCATTG-GTAGATGATTATGGATGATGAT-ATGATGTGAGATATGTATGTTCCGTCCGTA
*
7716693 GATGATTTCAGG-CGATGATATGAT
64 GATGATTTC-GGATGATGATATGAT
7716717 ATCAAGTATG
Statistics
Matches: 151, Mismatches: 28, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
97 2 0.01
98 143 0.95
99 6 0.04
ACGTcount: A:0.27, C:0.10, G:0.26, T:0.36
Consensus pattern (98 bp):
ATGTTCCATTGGTAGATGATTATGGATGATGATATGATGTGAGATATGTATGTTCCGTCCGTAGA
TGATTTCGGATGATGATATGATGCAAGATATGC
Found at i:7721781 original size:49 final size:49
Alignment explanation
Indices: 7721713--7722014 Score: 270
Period size: 49 Copynumber: 6.2 Consensus size: 49
7721703 TGTTGAGGAA
* * * *
7721713 TATGTTCCATCTATAGATGATTTTGGTCAATGATATGATGTG-GATTATG
1 TATGTTCCATCTGTAGATGATTTCGGACGATGATATGATGTGAGA-TATG
** * *
7721762 TATGTTCTGTCTGTAGATGATTTCGGACGATGATATAATCTGAGATATG
1 TATGTTCCATCTGTAGATGATTTCGGACGATGATATGATGTGAGATATG
* *
7721811 TATGTTCCATCTATAGATGATTTCGGACGATGATATGATGCGAGATATG
1 TATGTTCCATCTGTAGATGATTTCGGACGATGATATGATGTGAGATATG
* * * **
7721860 TATATTCCATCCGTAGATGA-TTCTGGACGATGACATGATGCAAGATATG
1 TATGTTCCATCTGTAGATGATTTC-GGACGATGATATGATGTGAGATATG
* ** * ** *
7721909 TATGCTCCATCCATAAATGA-TTCTAAACGATGATATGATGTGAGGTATG
1 TATGTTCCATCTGTAGATGATTTC-GGACGATGATATGATGTGAGATATG
* * * * ** * *
7721958 TATATTCCGTTTGTGGATGA-TTCTGGGTGATGATATGATATGAGGTATG
1 TATGTTCCATCTGTAGATGATTTC-GGACGATGATATGATGTGAGATATG
7722007 TATGTTCC
1 TATGTTCC
7722015 GTCAATGGAG
Statistics
Matches: 208, Mismatches: 43, Indels: 4
0.82 0.17 0.02
Matches are distributed among these distances:
48 3 0.01
49 203 0.98
50 2 0.01
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.37
Consensus pattern (49 bp):
TATGTTCCATCTGTAGATGATTTCGGACGATGATATGATGTGAGATATG
Found at i:7721823 original size:98 final size:97
Alignment explanation
Indices: 7721713--7722014 Score: 329
Period size: 98 Copynumber: 3.1 Consensus size: 97
7721703 TGTTGAGGAA
* * * *
7721713 TATGTTCCATCTATAGATGATTTTGGTCAATGATATGATGTGGATTATGTATGTTCTGTCTGTAG
1 TATGTTCCATCTATAGATGATTTTGGACGATGATATGATGTGGA-TATGTATATTCCGTCTGTAG
*
7721778 ATGATT-TCGGACGATGATATAATCTGAGATATG
65 ATGATTCT-GGACGATGATATGATCTGAGATATG
* * * *
7721811 TATGTTCCATCTATAGATGATTTCGGACGATGATATGATGCGAGATATGTATATTCCATCCGTAG
1 TATGTTCCATCTATAGATGATTTTGGACGATGATATGATGTG-GATATGTATATTCCGTCTGTAG
* *
7721876 ATGATTCTGGACGATGACATGATGC-AAGATATG
65 ATGATTCTGGACGATGATATGAT-CTGAGATATG
* * * * ** * * *
7721909 TATGCTCCATCCATAAATGATTCTAAACGATGATATGATGTGAGGTATGTATATTCCGTTTGTGG
1 TATGTTCCATCTATAGATGATTTTGGACGATGATATGATGTG-GATATGTATATTCCGTCTGTAG
** * *
7721974 ATGATTCTGGGTGATGATATGATATGAGGTATG
65 ATGATTCTGGACGATGATATGATCTGAGATATG
7722007 TATGTTCC
1 TATGTTCC
7722015 GTCAATGGAG
Statistics
Matches: 169, Mismatches: 31, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
98 165 0.98
99 4 0.02
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.37
Consensus pattern (97 bp):
TATGTTCCATCTATAGATGATTTTGGACGATGATATGATGTGGATATGTATATTCCGTCTGTAGA
TGATTCTGGACGATGATATGATCTGAGATATG
Found at i:7723154 original size:12 final size:12
Alignment explanation
Indices: 7723126--7723160 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
7723116 TAAATGCAAG
*
7723126 AAAATAAT-ATT
1 AAAATAATAATA
7723137 AAAATAATAATA
1 AAAATAATAATA
7723149 AAAATAATAATA
1 AAAATAATAATA
7723161 TTTTATCAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 8 0.36
12 14 0.64
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (12 bp):
AAAATAATAATA
Found at i:7729854 original size:38 final size:38
Alignment explanation
Indices: 7729803--7729879 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
7729793 TCTCTATAGG
*
7729803 AATGATACTCTACTTCATCACTATATTATTTGTTCGAT
1 AATGATACTCTACTTCATCACTATATTACTTGTTCGAT
7729841 AATGATACTCTACTTCATCACTATATTACTTGTTCGAT
1 AATGATACTCTACTTCATCACTATATTACTTGTTCGAT
7729879 A
1 A
7729880 TGTATATTTG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.30, C:0.19, G:0.08, T:0.43
Consensus pattern (38 bp):
AATGATACTCTACTTCATCACTATATTACTTGTTCGAT
Found at i:7733562 original size:36 final size:36
Alignment explanation
Indices: 7733522--7733592 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
7733512 CTTGTTTGTC
7733522 TGCCATTTATTAGTAGTTTTTAAAGTGTTTAATTGG
1 TGCCATTTATTAGTAGTTTTTAAAGTGTTTAATTGG
7733558 TGCCATTTATTAGTAGTTTTTAAAGTGTTTAATTG
1 TGCCATTTATTAGTAGTTTTTAAAGTGTTTAATTG
7733593 TGGCTCTTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.25, C:0.06, G:0.18, T:0.51
Consensus pattern (36 bp):
TGCCATTTATTAGTAGTTTTTAAAGTGTTTAATTGG
Found at i:7744035 original size:63 final size:63
Alignment explanation
Indices: 7743936--7744171 Score: 346
Period size: 63 Copynumber: 3.7 Consensus size: 63
7743926 CTCAACTGTC
* * * * *
7743936 TGAACTGTATTAACTCTGTTAACTCTTTATTGAGCACCATTGTGATCAGCTCTTTTAGCTCTT
1 TGAACTGTATCAACTCTGTCAACTCTCTATTGAGCACCATTGTCATCAGCTCTCTTAGCTCTT
*
7743999 TGAACTGTATCAACTCTGTCAACTCTCTATTGAGCACCATTATCATCAGCTCTCTTAGCTCTT
1 TGAACTGTATCAACTCTGTCAACTCTCTATTGAGCACCATTGTCATCAGCTCTCTTAGCTCTT
* *
7744062 TGAACTGTATCAGCTCTGTCAACTCTCTATTGAGCACCATTGTCATCAGCTCTCTTAACTCTT
1 TGAACTGTATCAACTCTGTCAACTCTCTATTGAGCACCATTGTCATCAGCTCTCTTAGCTCTT
* * * * * *
7744125 TCAACTGTATTAGCTCTGTCAACTCTCTGTTGAGCACTATCGTCATC
1 TGAACTGTATCAACTCTGTCAACTCTCTATTGAGCACCATTGTCATC
7744172 GTGCTATGGT
Statistics
Matches: 159, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
63 159 1.00
ACGTcount: A:0.22, C:0.26, G:0.13, T:0.38
Consensus pattern (63 bp):
TGAACTGTATCAACTCTGTCAACTCTCTATTGAGCACCATTGTCATCAGCTCTCTTAGCTCTT
Found at i:7744087 original size:27 final size:27
Alignment explanation
Indices: 7743980--7744150 Score: 72
Period size: 27 Copynumber: 5.7 Consensus size: 27
7743970 CACCATTGTG
* * *
7743980 ATCAGCTCTTTTAGCTCTTTGAACTGT
1 ATCAGCTCTGTCAACTCTTTGAACTGT
* *
7744007 ATCAACTCTGTCAACTCTCTATTGAGCACCATTAT
1 ATCAGCTCTGTCAA--CTCT-TTGA--A-C--TGT
* * *
7744042 CATCAGCTCTCTTAGCTCTTTGAACTGT
1 -ATCAGCTCTGTCAACTCTTTGAACTGT
7744070 ATCAGCTCTGTCAACTCTCTATTGAGCACCATTGT
1 ATCAGCTCTGTCAA--CTCT-TTGA--A-C--TGT
* * *
7744105 CATCAGCTCTCTTAACTCTTTCAACTGT
1 -ATCAGCTCTGTCAACTCTTTGAACTGT
*
7744133 ATTAGCTCTGTCAACTCT
1 ATCAGCTCTGTCAACTCT
7744151 CTGTTGAGCA
Statistics
Matches: 107, Mismatches: 19, Indels: 36
0.66 0.12 0.22
Matches are distributed among these distances:
27 36 0.34
28 5 0.05
29 8 0.07
30 10 0.09
31 2 0.02
32 2 0.02
33 9 0.08
34 8 0.07
35 5 0.05
36 22 0.21
ACGTcount: A:0.22, C:0.28, G:0.12, T:0.38
Consensus pattern (27 bp):
ATCAGCTCTGTCAACTCTTTGAACTGT
Found at i:7744521 original size:23 final size:22
Alignment explanation
Indices: 7744435--7744530 Score: 77
Period size: 23 Copynumber: 4.3 Consensus size: 22
7744425 AAATATGGTG
* * *
7744435 TGTAACATGTTGTGAATATGGCG
1 TGTAACAT-TTTTGAAAATGGCA
* * ** *
7744458 TGTAACAATTTTG-AACTTTCG
1 TGTAACATTTTTGAAAATGGCA
7744479 TGTAACATTTTTGAAAATGGCA
1 TGTAACATTTTTGAAAATGGCA
* *
7744501 TGTAACATTTTTTGGACATGGCA
1 TGTAACA-TTTTTGAAAATGGCA
7744524 TGTAACA
1 TGTAACA
7744531 ACATGACTAA
Statistics
Matches: 58, Mismatches: 13, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
21 16 0.28
22 15 0.26
23 27 0.47
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (22 bp):
TGTAACATTTTTGAAAATGGCA
Found at i:7745237 original size:21 final size:22
Alignment explanation
Indices: 7745199--7745258 Score: 72
Period size: 21 Copynumber: 2.9 Consensus size: 22
7745189 GAGGCTATGG
*
7745199 CACTT-GAGGACAATACTGTGA
1 CACTTAGAGGATAATACTGTGA
* *
7745220 C-GTTAGAGGATAACACTGTGA
1 CACTTAGAGGATAATACTGTGA
7745241 CACTTA-AGGATAATACTG
1 CACTTAGAGGATAATACTG
7745259 CAGTTGATAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
20 2 0.06
21 27 0.84
22 3 0.09
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (22 bp):
CACTTAGAGGATAATACTGTGA
Found at i:7748733 original size:76 final size:76
Alignment explanation
Indices: 7748653--7748846 Score: 201
Period size: 76 Copynumber: 2.6 Consensus size: 76
7748643 ATTAAATGTT
* * * *
7748653 GATGACATCTGGGGGTGACACGCTAAGTGGCTGTAGTATTATGGGGTGACA-TGCCATGCCCCAA
1 GATGACATCTTGAGGTGACACGCTAAGTGGTTGTAGTATTATGGGGTGACACT-CCACGCCCCAA
7748717 TTGTTAGATATC
65 TTGTTAGATATC
* * * * * * * *
7748729 GATGACATCTTAAGGTGACACGTTAAATGATTGCAGTATTATGGGTTGACACTCCACGTCCTAAT
1 GATGACATCTTGAGGTGACACGCTAAGTGGTTGTAGTATTATGGGGTGACACTCCACGCCCCAAT
* *
7748794 TGTTAGATGTT
66 TGTTAGATATC
* * * * *
7748805 GATGACATCTTGTGGTAACACACTGAGTGGTTGTAATATTAT
1 GATGACATCTTGAGGTGACACGCTAAGTGGTTGTAGTATTAT
7748847 AGGAAGACAC
Statistics
Matches: 93, Mismatches: 24, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
76 92 0.99
77 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (76 bp):
GATGACATCTTGAGGTGACACGCTAAGTGGTTGTAGTATTATGGGGTGACACTCCACGCCCCAAT
TGTTAGATATC
Found at i:7752767 original size:22 final size:23
Alignment explanation
Indices: 7752715--7752779 Score: 71
Period size: 23 Copynumber: 2.8 Consensus size: 23
7752705 GTCACAACTG
* *
7752715 TGTCACATATTCTCACCAT-TACG
1 TGTCACACATTC-CACCATGTACA
*
7752738 TGTTACACATTCCACCATGT-CA
1 TGTCACACATTCCACCATGTACA
7752760 TGTCACACATTCCCACCATG
1 TGTCACACATT-CCACCATG
7752780 ACACCCTAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
22 17 0.47
23 19 0.53
ACGTcount: A:0.26, C:0.34, G:0.09, T:0.31
Consensus pattern (23 bp):
TGTCACACATTCCACCATGTACA
Found at i:7753299 original size:21 final size:22
Alignment explanation
Indices: 7753275--7753322 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
7753265 TTACCTAATT
7753275 TTAATTCTAACT-TT-AATATTG
1 TTAATTCTAACTATTAAATA-TG
*
7753296 TTAAATCTAACTATTAAATATG
1 TTAATTCTAACTATTAAATATG
7753318 TTAAT
1 TTAAT
7753323 GTAATATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 11 0.48
22 8 0.35
23 4 0.17
ACGTcount: A:0.40, C:0.08, G:0.04, T:0.48
Consensus pattern (22 bp):
TTAATTCTAACTATTAAATATG
Found at i:7762337 original size:21 final size:21
Alignment explanation
Indices: 7762295--7762351 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
7762285 TGATGACATG
* * *
7762295 AATCTTTGGCATGAAGGTATC
1 AATCTTTGTCATGAAAGCATC
*
7762316 ATTCTTTGTCATGAAAGCATC
1 AATCTTTGTCATGAAAGCATC
*
7762337 AACCTTTGTCATGAA
1 AATCTTTGTCATGAA
7762352 GTGCATGGAC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.35
Consensus pattern (21 bp):
AATCTTTGTCATGAAAGCATC
Found at i:7765187 original size:5 final size:5
Alignment explanation
Indices: 7765171--7765213 Score: 59
Period size: 5 Copynumber: 8.2 Consensus size: 5
7765161 GGAAATGGCA
*
7765171 TCATT TCCTT TCATT TCATT TCAATT TACATT TCATT TCATT T
1 TCATT TCATT TCATT TCATT TC-ATT T-CATT TCATT TCATT T
7765214 TCTTTAAGGT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
5 25 0.74
6 8 0.24
7 1 0.03
ACGTcount: A:0.21, C:0.21, G:0.00, T:0.58
Consensus pattern (5 bp):
TCATT
Found at i:7767458 original size:17 final size:17
Alignment explanation
Indices: 7767436--7767468 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
7767426 ATAGAAGAAA
7767436 GTAGAATTTGTTCTCAC
1 GTAGAATTTGTTCTCAC
7767453 GTAGAATTTGTTCTCA
1 GTAGAATTTGTTCTCA
7767469 TGGAGAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.42
Consensus pattern (17 bp):
GTAGAATTTGTTCTCAC
Found at i:7767475 original size:17 final size:17
Alignment explanation
Indices: 7767438--7767477 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
7767428 AGAAGAAAGT
*
7767438 AGAATTTGTTCTCACGT
1 AGAATTTGTTCTCACGG
*
7767455 AGAATTTGTTCTCATGG
1 AGAATTTGTTCTCACGG
7767472 AGAATT
1 AGAATT
7767478 GAATTAATCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.28, C:0.12, G:0.20, T:0.40
Consensus pattern (17 bp):
AGAATTTGTTCTCACGG
Found at i:7767568 original size:21 final size:20
Alignment explanation
Indices: 7767537--7767592 Score: 58
Period size: 21 Copynumber: 2.8 Consensus size: 20
7767527 TCTAAATAAT
* *
7767537 TAAATTTAAAATTATTAAAA
1 TAAAATTAAAATTAATAAAA
* *
7767557 TAAAAATTAAAACTAATAAAC
1 T-AAAATTAAAATTAATAAAA
*
7767578 TGAAATTAAAATTAA
1 TAAAATTAAAATTAA
7767593 ATAGTAAATT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
20 13 0.45
21 16 0.55
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (20 bp):
TAAAATTAAAATTAATAAAA
Found at i:7770308 original size:10 final size:10
Alignment explanation
Indices: 7770295--7770323 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
7770285 GATTTTTGAG
7770295 TCATCTAAGC
1 TCATCTAAGC
7770305 TCATCTAAGC
1 TCATCTAAGC
7770315 TCATCTAAG
1 TCATCTAAG
7770324 GTAAGGATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.31, C:0.28, G:0.10, T:0.31
Consensus pattern (10 bp):
TCATCTAAGC
Found at i:7772375 original size:16 final size:17
Alignment explanation
Indices: 7772343--7772377 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7772333 TGAGTTTTAT
*
7772343 GAAATGTGTGCATAATG
1 GAAATGTATGCATAATG
7772360 GAAATGTATG-ATAATG
1 GAAATGTATGCATAATG
7772376 GA
1 GA
7772378 TATTTTGTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.40, C:0.03, G:0.29, T:0.29
Consensus pattern (17 bp):
GAAATGTATGCATAATG
Found at i:7773657 original size:71 final size:70
Alignment explanation
Indices: 7773575--7773760 Score: 225
Period size: 71 Copynumber: 2.7 Consensus size: 70
7773565 TTAATTGTTT
* * ** * *
7773575 AATTTAATCAATTAGGCCCAATAACTTCATTAAACAATTTAATTAATTAGGCCTAATAATTTAAT
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAACAATTTAATCAACAAGGCCCAATAACTTAAT
*
7773640 TAAAT
66 TAAAC
* **
7773645 AATTTTAATCAATTAGGCCCAATGACTTAATTAAACAATTTTAATCAACAAGGCCCAATGCCTTA
1 AA-TTTAATCAATTAGGCCCAATAACTTAATTAAACAA-TTTAATCAACAAGGCCCAATAACTTA
7773710 ATTAAAC
64 ATTAAAC
*
7773717 AATTTAATTAATTAGG--C-ATAACTTAATTAAACAATTTTAATCAA
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAACAA-TTTAATCAA
7773761 GTGCTTGAGA
Statistics
Matches: 102, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
68 26 0.25
69 1 0.01
70 2 0.02
71 46 0.45
72 27 0.26
ACGTcount: A:0.44, C:0.15, G:0.06, T:0.35
Consensus pattern (70 bp):
AATTTAATCAATTAGGCCCAATAACTTAATTAAACAATTTAATCAACAAGGCCCAATAACTTAAT
TAAAC
Found at i:7773659 original size:36 final size:36
Alignment explanation
Indices: 7773577--7773760 Score: 234
Period size: 36 Copynumber: 5.2 Consensus size: 36
7773567 AATTGTTTAA
*
7773577 TTTAATCAATTAGGCCCAATAACTTCATTAAACAA-
1 TTTAATCAATTAGGCCCAATAACTTAATTAAACAAT
* * * *
7773612 TTTAATTAATTAGGCCTAATAATTTAATTAAATAAT
1 TTTAATCAATTAGGCCCAATAACTTAATTAAACAAT
*
7773648 TTTAATCAATTAGGCCCAATGACTTAATTAAACAAT
1 TTTAATCAATTAGGCCCAATAACTTAATTAAACAAT
** **
7773684 TTTAATCAACAAGGCCCAATGCCTTAATTAAACAA-
1 TTTAATCAATTAGGCCCAATAACTTAATTAAACAAT
*
7773719 TTTAATTAATTAGG--C-ATAACTTAATTAAACAAT
1 TTTAATCAATTAGGCCCAATAACTTAATTAAACAAT
7773752 TTTAATCAA
1 TTTAATCAA
7773761 GTGCTTGAGA
Statistics
Matches: 128, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
32 15 0.12
33 9 0.07
35 41 0.32
36 63 0.49
ACGTcount: A:0.43, C:0.15, G:0.07, T:0.35
Consensus pattern (36 bp):
TTTAATCAATTAGGCCCAATAACTTAATTAAACAAT
Found at i:7778390 original size:34 final size:35
Alignment explanation
Indices: 7778323--7778398 Score: 127
Period size: 36 Copynumber: 2.2 Consensus size: 35
7778313 TGCATGATCA
*
7778323 TCATCATCCTTATGATGTTGATATGCTTCCTTATCC
1 TCATCATCCTTATGATGTTGA-AGGCTTCCTTATCC
7778359 TCATCATCCTTATGATGTTG-AGGCTTCCTTATCC
1 TCATCATCCTTATGATGTTGAAGGCTTCCTTATCC
7778393 TCATCA
1 TCATCA
7778399 CTAGCATCAA
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
34 19 0.49
36 20 0.51
ACGTcount: A:0.20, C:0.26, G:0.12, T:0.42
Consensus pattern (35 bp):
TCATCATCCTTATGATGTTGAAGGCTTCCTTATCC
Found at i:7779285 original size:189 final size:190
Alignment explanation
Indices: 7778958--7779338 Score: 611
Period size: 189 Copynumber: 2.0 Consensus size: 190
7778948 GAGTAAGACC
*
7778958 CACCAATAGCTCAAACATATTCGTGTAAAAGTGTGGCCTTGAGTGTGCTCAACAAGCATATGATT
1 CACCAATAGCTCAAACATATTCGTGTAAAAGTGTGGCCTTGAGTGTGCTCAACAAGCATATAATT
* *
7779023 AAAAGAGTAGGCAAATTATCTTTCTATATGGTGGAAGGAAACTTAATCATACGTGATATGTGACT
66 AAAAGAGTAGGCAAAGTATCATTCTATATGGTGGAAGGAAACTTAATCATACGTGATATGTGACT
* *
7779088 TAATATTTACCAAAAGATTTTATC-CTTTCGTTTTATTAACGTCTCATTTGATTAATATG
131 TAATATTTACCAAAAGATTTTATCTCTTTCATTTTATTAACGTCTCATTTGATTAACATG
* * *
7779147 CACCAATAGCTCAAACATATTTGTGTAAAAGTGTGGCCTTGAGTGTGCTCAACAAGCCTCTAATT
1 CACCAATAGCTCAAACATATTCGTGTAAAAGTGTGGCCTTGAGTGTGCTCAACAAGCATATAATT
* * * *
7779212 AAAAGAGTAGGCAAGGTATCATTCTATATGGTGGAAGGCAACTTAATCATATGTGGTATGTGACT
66 AAAAGAGTAGGCAAAGTATCATTCTATATGGTGGAAGGAAACTTAATCATACGTGATATGTGACT
* * * *
7779277 TTATATTTACCAAAATATTTTATCTTTTTCATTTTATTAAGGTCTCATTTGATTAACATG
131 TAATATTTACCAAAAGATTTTATCTCTTTCATTTTATTAACGTCTCATTTGATTAACATG
7779337 CA
1 CA
7779339 TAGCATTTAA
Statistics
Matches: 175, Mismatches: 16, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
189 142 0.81
190 33 0.19
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (190 bp):
CACCAATAGCTCAAACATATTCGTGTAAAAGTGTGGCCTTGAGTGTGCTCAACAAGCATATAATT
AAAAGAGTAGGCAAAGTATCATTCTATATGGTGGAAGGAAACTTAATCATACGTGATATGTGACT
TAATATTTACCAAAAGATTTTATCTCTTTCATTTTATTAACGTCTCATTTGATTAACATG
Found at i:7782403 original size:36 final size:36
Alignment explanation
Indices: 7782329--7782499 Score: 199
Period size: 36 Copynumber: 4.9 Consensus size: 36
7782319 AATTTAATCG
*
7782329 ATTAGGCCCAATAACTTAATTAAACAA-TTTAATTA
1 ATTAGGCCCAACAACTTAATTAAACAATTTTAATTA
** * *
7782364 ATTAGGCTTAACAATTTAATTAAACAATTTTAATAA
1 ATTAGGCCCAACAACTTAATTAAACAATTTTAATTA
**
7782400 ATTAGGCCCAATGACTTAATTAAACAATTTTAATTA
1 ATTAGGCCCAACAACTTAATTAAACAATTTTAATTA
** * *
7782436 ATTAGGCCCAATGACTTAATTATACAA-TTTAGTTA
1 ATTAGGCCCAACAACTTAATTAAACAATTTTAATTA
*
7782471 ATTA-G-TC-ACAACTTAATTAAACAATTTTA
1 ATTAGGCCCAACAACTTAATTAAACAATTTTA
7782500 TGCAAGTGCT
Statistics
Matches: 117, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
32 14 0.12
33 5 0.04
34 1 0.01
35 34 0.29
36 63 0.54
ACGTcount: A:0.43, C:0.13, G:0.07, T:0.37
Consensus pattern (36 bp):
ATTAGGCCCAACAACTTAATTAAACAATTTTAATTA
Found at i:7782474 original size:71 final size:71
Alignment explanation
Indices: 7782329--7782499 Score: 206
Period size: 71 Copynumber: 2.4 Consensus size: 71
7782319 AATTTAATCG
** *
7782329 ATTAGGCCCAATAACTTAATTAAACAA-TTTAATTAATTAGGCTTAACAATTTAATTAAACAATT
1 ATTAGGCCCAAT-ACTTAATTAAACAATTTTAATTAATTAGGCCCAACAACTTAATTAAACAATT
7782393 TTAATAA
65 TTAATAA
** *
7782400 ATTAGGCCCAATGACTTAATTAAACAATTTTAATTAATTAGGCCCAATGACTTAATTATACAA-T
1 ATTAGGCCCAAT-ACTTAATTAAACAATTTTAATTAATTAGGCCCAACAACTTAATTAAACAATT
* *
7782464 TTAGTTA
65 TTAATAA
* *
7782471 ATTAGTCAC-A-ACTTAATTAAACAATTTTA
1 ATTAGGCCCAATACTTAATTAAACAATTTTA
7782500 TGCAAGTGCT
Statistics
Matches: 88, Mismatches: 11, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
68 19 0.22
70 1 0.01
71 39 0.44
72 29 0.33
ACGTcount: A:0.43, C:0.13, G:0.07, T:0.37
Consensus pattern (71 bp):
ATTAGGCCCAATACTTAATTAAACAATTTTAATTAATTAGGCCCAACAACTTAATTAAACAATTT
TAATAA
Found at i:7791555 original size:25 final size:25
Alignment explanation
Indices: 7791504--7791559 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
7791494 TCGCAACCAC
* * *
7791504 GTATATCAACTCGTGGCCTAGATAT
1 GTATATCAACCCATGGCCTAGACAT
* *
7791529 GTATATCAACCCATGGCCTTGCCAT
1 GTATATCAACCCATGGCCTAGACAT
7791554 GTATAT
1 GTATAT
7791560 ATATCATAGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (25 bp):
GTATATCAACCCATGGCCTAGACAT
Found at i:7793072 original size:20 final size:21
Alignment explanation
Indices: 7793049--7793088 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7793039 TTTCCTCTTT
*
7793049 CTCCATTC-TCTTTCTTTTTC
1 CTCCATTCTTCCTTCTTTTTC
*
7793069 CTCCTTTCTTCCTTCTTTTT
1 CTCCATTCTTCCTTCTTTTT
7793089 TGTTTTCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.03, C:0.35, G:0.00, T:0.62
Consensus pattern (21 bp):
CTCCATTCTTCCTTCTTTTTC
Found at i:7803287 original size:18 final size:18
Alignment explanation
Indices: 7803261--7803298 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
7803251 ATCTTTGTAA
*
7803261 TATATGGAGTGGAAAATG
1 TATAAGGAGTGGAAAATG
7803279 TATAAGGAGTGGAAAATG
1 TATAAGGAGTGGAAAATG
7803297 TA
1 TA
7803299 ACACCTCCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.32, T:0.26
Consensus pattern (18 bp):
TATAAGGAGTGGAAAATG
Found at i:7809571 original size:35 final size:35
Alignment explanation
Indices: 7809525--7809714 Score: 166
Period size: 35 Copynumber: 5.4 Consensus size: 35
7809515 AGTTGTGCCC
* *
7809525 AATTAATTAAATTGTCTAATTAAATCATTGGGCCT
1 AATTAATTAAATTATCTAATTAAATTATTGGGCCT
* * * *
7809560 AATTAATTAAATTATTTAATTAAGTCATTGAGCCT
1 AATTAATTAAATTATCTAATTAAATTATTGGGCCT
* * * *
7809595 AATTAAGTAAATTAAAC-AATTAAATTATTAGACCT
1 AATTAATTAAATT-ATCTAATTAAATTATTGGGCCT
* * * * *
7809630 AATTGATTAAAATTGTTTAATTAAATTGTTGGGCTT
1 AATTAATT-AAATTATCTAATTAAATTATTGGGCCT
* * * *
7809666 AATTAATTAACTTATATAATTAAGTTATTGGGTCT
1 AATTAATTAAATTATCTAATTAAATTATTGGGCCT
* *
7809701 AATTGACTAAATTA
1 AATTAATTAAATTA
7809715 AACAATTAAG
Statistics
Matches: 120, Mismatches: 32, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
35 93 0.77
36 27 0.22
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.42
Consensus pattern (35 bp):
AATTAATTAAATTATCTAATTAAATTATTGGGCCT
Found at i:7809651 original size:106 final size:105
Alignment explanation
Indices: 7809525--7809723 Score: 281
Period size: 106 Copynumber: 1.9 Consensus size: 105
7809515 AGTTGTGCCC
*
7809525 AATTAATTAAATTGTCTAATTAAATCATTGGGCCTAATTAATTAAATTATTTAATTAAGTCATTG
1 AATTAATTAAATTGTCTAATTAAATCATTGGGCCTAATTAATTAAATTATATAATTAAGTCATTG
*
7809590 AGCCTAATTAAGTAAATTAAACAATTAAATTATTAGACCT
66 AGCCTAATTAACTAAATTAAACAATTAAATTATTAGACCT
* * ** * * *
7809630 AATTGATTAAAATTGTTTAATTAAATTGTTGGGCTTAATTAATTAACTTATATAATTAAGTTATT
1 AATTAATT-AAATTGTCTAATTAAATCATTGGGCCTAATTAATTAAATTATATAATTAAGTCATT
* * *
7809695 GGGTCTAATTGACTAAATTAAACAATTAA
65 GAGCCTAATTAACTAAATTAAACAATTAA
7809724 GTTAATTGGG
Statistics
Matches: 81, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
105 7 0.09
106 74 0.91
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.41
Consensus pattern (105 bp):
AATTAATTAAATTGTCTAATTAAATCATTGGGCCTAATTAATTAAATTATATAATTAAGTCATTG
AGCCTAATTAACTAAATTAAACAATTAAATTATTAGACCT
Found at i:7812381 original size:31 final size:32
Alignment explanation
Indices: 7812324--7812389 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
7812314 GATAGCCATT
7812324 AAATGTTATTTCATTAAAGTTAAAAGAGATCA
1 AAATGTTATTTCATTAAAGTTAAAAGAGATCA
*
7812356 AAATGTTATTTCATTATA-TTAAAAGAGATCA
1 AAATGTTATTTCATTAAAGTTAAAAGAGATCA
7812387 AAA
1 AAA
7812390 AAGAAAATGT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 16 0.48
32 17 0.52
ACGTcount: A:0.48, C:0.06, G:0.11, T:0.35
Consensus pattern (32 bp):
AAATGTTATTTCATTAAAGTTAAAAGAGATCA
Found at i:7826203 original size:52 final size:51
Alignment explanation
Indices: 7826128--7826299 Score: 146
Period size: 52 Copynumber: 3.5 Consensus size: 51
7826118 CTAACAAAAT
* * *
7826128 AACACAATGTCATCAATACACCATTAAAAACAAACCATATCCATACTATATA
1 AACAAAATGTCATCAACAAACCATT-AAAACAAACCATATCCATACTATATA
* * *
7826180 AACAAAATGTCATCAACAAACCA-T-------ACCATTTTCA-ACAAAATATA
1 AACAAAATGTCATCAACAAACCATTAAAACAAACCATATCCATAC--TATATA
** * * *
7826224 AACACGATGTCATTAACAGACCATTAACAACAAACCATATCCATACTATAAA
1 AACAAAATGTCATCAACAAACCATTAA-AACAAACCATATCCATACTATATA
7826276 AACAAAATGTCATCAACAAACCAT
1 AACAAAATGTCATCAACAAACCAT
7826300 ACCATGTTCA
Statistics
Matches: 90, Mismatches: 18, Indels: 24
0.68 0.14 0.18
Matches are distributed among these distances:
42 2 0.02
43 8 0.09
44 24 0.27
45 1 0.01
51 1 0.01
52 44 0.49
53 8 0.09
54 2 0.02
ACGTcount: A:0.51, C:0.24, G:0.03, T:0.22
Consensus pattern (51 bp):
AACAAAATGTCATCAACAAACCATTAAAACAAACCATATCCATACTATATA
Found at i:7826225 original size:44 final size:44
Alignment explanation
Indices: 7826175--7826321 Score: 118
Period size: 44 Copynumber: 3.2 Consensus size: 44
7826165 TATCCATACT
*
7826175 ATATAAACAAAATGTCATCAACAAACCATACCATTTTCAACAAA
1 ATATAAACAAAATGTCATCAACAAACCATACCATATTCAACAAA
** * * *
7826219 ATATAAACACGATGTCATTAACAGACCATTAACAACAAACCATATCCATAC--T
1 ATATAAACAAAATGTCA-T--CA-A-CA--AAC--CATACCATATTCA-ACAAA
* *
7826271 ATAAAAACAAAATGTCATCAACAAACCATACCATGTTCAACAAA
1 ATATAAACAAAATGTCATCAACAAACCATACCATATTCAACAAA
7826315 ATATAAA
1 ATATAAA
7826322 TCCTAAATCC
Statistics
Matches: 77, Mismatches: 14, Indels: 24
0.67 0.12 0.21
Matches are distributed among these distances:
42 2 0.03
43 10 0.13
44 21 0.27
45 4 0.05
47 4 0.05
48 2 0.03
49 4 0.05
51 4 0.05
52 14 0.18
53 10 0.13
54 2 0.03
ACGTcount: A:0.52, C:0.22, G:0.04, T:0.22
Consensus pattern (44 bp):
ATATAAACAAAATGTCATCAACAAACCATACCATATTCAACAAA
Found at i:7826235 original size:96 final size:96
Alignment explanation
Indices: 7826128--7826321 Score: 325
Period size: 96 Copynumber: 2.0 Consensus size: 96
7826118 CTAACAAAAT
* *
7826128 AACACAATGTCATCAATACACCATTAAAAACAAACCATATCCATACTATATAAACAAAATGTCAT
1 AACACAATGTCATCAACACACCATTAAAAACAAACCATATCCATACTATAAAAACAAAATGTCAT
*
7826193 CAACAAACCATACCATTTTCAACAAAATATA
66 CAACAAACCATACCATGTTCAACAAAATATA
* * * *
7826224 AACACGATGTCATTAACAGACCATTAACAACAAACCATATCCATACTATAAAAACAAAATGTCAT
1 AACACAATGTCATCAACACACCATTAAAAACAAACCATATCCATACTATAAAAACAAAATGTCAT
7826289 CAACAAACCATACCATGTTCAACAAAATATA
66 CAACAAACCATACCATGTTCAACAAAATATA
7826320 AA
1 AA
7826322 TCCTAAATCC
Statistics
Matches: 91, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 91 1.00
ACGTcount: A:0.51, C:0.24, G:0.04, T:0.22
Consensus pattern (96 bp):
AACACAATGTCATCAACACACCATTAAAAACAAACCATATCCATACTATAAAAACAAAATGTCAT
CAACAAACCATACCATGTTCAACAAAATATA
Found at i:7831337 original size:14 final size:15
Alignment explanation
Indices: 7831318--7831346 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7831308 TTTCAACACC
7831318 TTCAATTTT-AATAT
1 TTCAATTTTCAATAT
7831332 TTCAATTTTCAATAT
1 TTCAATTTTCAATAT
7831347 CTGATAGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.34, C:0.10, G:0.00, T:0.55
Consensus pattern (15 bp):
TTCAATTTTCAATAT
Found at i:7839476 original size:21 final size:21
Alignment explanation
Indices: 7839450--7839532 Score: 71
Period size: 21 Copynumber: 3.9 Consensus size: 21
7839440 AGCCGAACCC
* *
7839450 TCCTTT-TCCTTTTCTTCTTCT
1 TCCTTTCTCCCTTTC-TCTCCT
7839471 TCCTTTCTCCCTTTCTCTCCT
1 TCCTTTCTCCCTTTCTCTCCT
* *
7839492 TCCTTTCTTCCTTTCGCTTCCT
1 TCCTTTCTCCCTTTCTC-TCCT
*
7839514 T-TTTTCTTCTCCTTTCTCT
1 TCCTTTC-TC-CCTTTCTCT
7839533 TTCTTCTTGG
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
21 30 0.59
22 14 0.27
23 7 0.14
ACGTcount: A:0.00, C:0.39, G:0.01, T:0.60
Consensus pattern (21 bp):
TCCTTTCTCCCTTTCTCTCCT
Found at i:7844502 original size:24 final size:24
Alignment explanation
Indices: 7844448--7844503 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
7844438 CTGAATTTTT
7844448 AATATT-AAATAGCCCCATTCTAG
1 AATATTCAAATAGCCCCATTCTAG
* * *
7844471 AATTTTCAAATTGCCTCATTCTAG
1 AATATTCAAATAGCCCCATTCTAG
*
7844495 AGTATTCAA
1 AATATTCAA
7844504 TGCAACTGTT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 5 0.19
24 22 0.81
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.36
Consensus pattern (24 bp):
AATATTCAAATAGCCCCATTCTAG
Found at i:7844986 original size:17 final size:17
Alignment explanation
Indices: 7844935--7844986 Score: 68
Period size: 17 Copynumber: 3.1 Consensus size: 17
7844925 TTTTTCAAAT
*
7844935 GTGATTATTCAAATTAA
1 GTGACTATTCAAATTAA
* *
7844952 ATGACTCTTCAAATTAA
1 GTGACTATTCAAATTAA
*
7844969 GTGAGTATTCAAATTAA
1 GTGACTATTCAAATTAA
7844986 G
1 G
7844987 GCATGACTCT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (17 bp):
GTGACTATTCAAATTAA
Found at i:7853454 original size:29 final size:27
Alignment explanation
Indices: 7853422--7853505 Score: 114
Period size: 29 Copynumber: 3.0 Consensus size: 27
7853412 GTTACACCTA
7853422 ATCCTTGAAAAGGAAAAAGGTTATGCTTG
1 ATCCTTGAAAAGG-AAAAGGTTATG-TTG
*
7853451 ATCCTTTAAAAGGTAAAAGGTTATGTCTG
1 ATCCTTGAAAAGG-AAAAGGTTATGT-TG
*
7853480 ATCCTTGAAAAGGCAAAGGTTATGTT
1 ATCCTTGAAAAGGAAAAGGTTATGTT
7853506 TGCTCACGTG
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
27 1 0.02
28 12 0.24
29 37 0.74
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.31
Consensus pattern (27 bp):
ATCCTTGAAAAGGAAAAGGTTATGTTG
Found at i:7853517 original size:29 final size:28
Alignment explanation
Indices: 7853422--7853523 Score: 89
Period size: 29 Copynumber: 3.5 Consensus size: 28
7853412 GTTACACCTA
* *
7853422 ATCCTTGAAAAGGAAAAAGGTTATG-CTTG
1 ATCCGTGAAAAGG-CAAAGGTTATGTC-TG
* * *
7853451 ATCCTTTAAAAGGTAAAAGGTTATGTCTG
1 ATCCGTGAAAAGG-CAAAGGTTATGTCTG
* *
7853480 ATCCTTGAAAAGGCAAAGGTTATGTTTG
1 ATCCGTGAAAAGGCAAAGGTTATGTCTG
*
7853508 CTCACGTGAAAAGGCA
1 ATC-CGTGAAAAGGCA
7853524 TTGTGTGGGT
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
28 15 0.23
29 48 0.75
30 1 0.02
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (28 bp):
ATCCGTGAAAAGGCAAAGGTTATGTCTG
Found at i:7853568 original size:34 final size:34
Alignment explanation
Indices: 7853492--7853568 Score: 91
Period size: 34 Copynumber: 2.3 Consensus size: 34
7853482 CCTTGAAAAG
* * *
7853492 GCAAAGGTTATGTTTGCTCACGTGAAAAGGCATT
1 GCAAGGGTTATGCTTGCTCACATGAAAAGGCATT
*** *
7853526 GTGTGGGTTATGCTTGCTCCCATGAAAAGGCATT
1 GCAAGGGTTATGCTTGCTCACATGAAAAGGCATT
7853560 GCAAGGGTT
1 GCAAGGGTT
7853569 GTACTTCAAC
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.30
Consensus pattern (34 bp):
GCAAGGGTTATGCTTGCTCACATGAAAAGGCATT
Found at i:7859024 original size:16 final size:17
Alignment explanation
Indices: 7859003--7859034 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
7858993 TTAAAATTCA
7859003 AAAAAATC-AGAAAAAT
1 AAAAAATCTAGAAAAAT
7859019 AAAAAATCTAGAAAAA
1 AAAAAATCTAGAAAAA
7859035 AAATAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.75, C:0.06, G:0.06, T:0.12
Consensus pattern (17 bp):
AAAAAATCTAGAAAAAT
Found at i:7864282 original size:38 final size:36
Alignment explanation
Indices: 7864157--7864284 Score: 123
Period size: 36 Copynumber: 3.5 Consensus size: 36
7864147 TGGGCAAGTA
* * *
7864157 ATTACTACAAAAAAATTAATTGTAATAGTTCTAGGC
1 ATTATTACAAAAAAAATAATTTTAATAGTTCTAGGC
* * * *
7864193 TTTATTACAAAAACAAA-AGTTTTAACAGTTCTAAGC
1 ATTATTACAAAAA-AAATAATTTTAATAGTTCTAGGC
* *
7864229 ACTATTACACAAAAAATAATTTTATAATAGTTCTAGGC
1 ATTATTACAAAAAAAATAA-TTT-TAATAGTTCTAGGC
* *
7864267 GTTCTTACAAAAAAAATA
1 ATTATTACAAAAAAAATA
7864285 CAAATTTTTA
Statistics
Matches: 71, Mismatches: 17, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
35 3 0.04
36 37 0.52
37 5 0.07
38 26 0.37
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (36 bp):
ATTATTACAAAAAAAATAATTTTAATAGTTCTAGGC
Found at i:7870620 original size:17 final size:17
Alignment explanation
Indices: 7870598--7870634 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
7870588 TTCTTAGTAC
7870598 AATCGACATTCAAAAGG
1 AATCGACATTCAAAAGG
7870615 AATCGACATTCAAAAGG
1 AATCGACATTCAAAAGG
7870632 AAT
1 AAT
7870635 GTTATGAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.19
Consensus pattern (17 bp):
AATCGACATTCAAAAGG
Found at i:7870751 original size:19 final size:19
Alignment explanation
Indices: 7870727--7870774 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
7870717 AAAAAAAGTA
*
7870727 ATTTGATATGAAT-TCTTAT
1 ATTTGATATGAATATC-TAG
*
7870746 ATTTGATTATGTATATCTAG
1 ATTTGA-TATGAATATCTAG
7870766 ATTTGATAT
1 ATTTGATAT
7870775 AGATTGAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 9 0.36
20 14 0.56
21 2 0.08
ACGTcount: A:0.31, C:0.04, G:0.12, T:0.52
Consensus pattern (19 bp):
ATTTGATATGAATATCTAG
Found at i:7871113 original size:13 final size:13
Alignment explanation
Indices: 7871081--7871114 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
7871071 TGACATGATG
*
7871081 ATGTGGAAATGCC
1 ATGTGGCAATGCC
7871094 ATGTGGCAATGCC
1 ATGTGGCAATGCC
7871107 ATGTGGCA
1 ATGTGGCA
7871115 CTAATATGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (13 bp):
ATGTGGCAATGCC
Found at i:7892606 original size:21 final size:22
Alignment explanation
Indices: 7892561--7892606 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
7892551 CAGAGTGCTT
* *
7892561 TTTGTCCAAAAGGTATCGATGC
1 TTTGTCCAAAAGGTATCAATAC
*
7892583 TTTGT-CATAAGGTATCAATAC
1 TTTGTCCAAAAGGTATCAATAC
7892604 TTT
1 TTT
7892607 TGAAATAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.39
Consensus pattern (22 bp):
TTTGTCCAAAAGGTATCAATAC
Found at i:7893167 original size:74 final size:73
Alignment explanation
Indices: 7893079--7893348 Score: 346
Period size: 74 Copynumber: 3.7 Consensus size: 73
7893069 GTCGATTCAG
* * * ** *
7893079 AGACAGAGAAAACTTAGTCGACTAAGAAGCATGGTTAGTCGACTAAGAGCTCACAACTAAAGACT
1 AGACA-AGAGAACTTAATCGACTAAGAAGCATGGTTAGTCAACTAAGAGCTCATTACTAGAGACT
7893144 TCAATTACA
65 TCAATTACA
* *
7893153 AGACAAAGAGAACTTAATCGACTAAGAAGCATGGTTAGTCAACTAACAGCTCATTACCAGAGACT
1 AGAC-AAGAGAACTTAATCGACTAAGAAGCATGGTTAGTCAACTAAGAGCTCATTACTAGAGACT
7893218 TCAATTACA
65 TCAATTACA
* * *
7893227 AGGCAA-AGAACTTAATCGACTAAGAAGCATGGTTAGTCAACTAAGAGCTCATTGCTAGAGAATT
1 AGACAAGAGAACTTAATCGACTAAGAAGCATGGTTAGTCAACTAAGAGCTCATTACTAGAGACTT
*
7893291 CAATTATA
66 CAATTACA
* * * *
7893299 AGATCGAGAAGATC-TAATCGACTAAGAAGTATGGTTAGTTAACTAAGAGC
1 AGA-CAAG-AGAACTTAATCGACTAAGAAGCATGGTTAGTCAACTAAGAGC
7893349 ACTCTGTCAA
Statistics
Matches: 173, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
72 63 0.36
73 4 0.02
74 101 0.58
75 5 0.03
ACGTcount: A:0.41, C:0.17, G:0.19, T:0.23
Consensus pattern (73 bp):
AGACAAGAGAACTTAATCGACTAAGAAGCATGGTTAGTCAACTAAGAGCTCATTACTAGAGACTT
CAATTACA
Found at i:7898144 original size:67 final size:67
Alignment explanation
Indices: 7898052--7898249 Score: 272
Period size: 68 Copynumber: 2.9 Consensus size: 67
7898042 GAAAAGTTAG
* *
7898052 TTTTGGATTTTGGTTGATCCAATGAAAAACCATTTTTAAAGGTTGTGGTTGAGCCTTTGAAAAAC
1 TTTTAGATTTTGGTTGATCCCATGAAAAACCATTTTTAAAGGTTGTGGTTGAGCCTTTGAAAAAC
7898117 TA
66 TA
* *
7898119 TTTGTAG-TTTTGGTTAATCCCATGAAAAACCATTGTTAAAAGGTTGTGGTTGAGCCTTTGAAAA
1 TTT-TAGATTTTGGTTGATCCCATGAAAAACCATT-TTTAAAGGTTGTGGTTGAGCCTTTGAAAA
7898183 ACTA
64 ACTA
* * * * * * *
7898187 TTTTGGATTTTGGTTGATCCCATGAAAAATCATTATTAAAGGTAGTGGCTAAGCCTGTGAAAA
1 TTTTAGATTTTGGTTGATCCCATGAAAAACCATTTTTAAAGGTTGTGGTTGAGCCTTTGAAAA
7898250 GTCATTATAA
Statistics
Matches: 115, Mismatches: 13, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
67 53 0.46
68 62 0.54
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.37
Consensus pattern (67 bp):
TTTTAGATTTTGGTTGATCCCATGAAAAACCATTTTTAAAGGTTGTGGTTGAGCCTTTGAAAAAC
TA
Found at i:7898213 original size:32 final size:32
Alignment explanation
Indices: 7898052--7898220 Score: 101
Period size: 32 Copynumber: 5.1 Consensus size: 32
7898042 GAAAAGTTAG
*
7898052 TTTTGGATTTTGGTTGATCCAATGAAAAACCA
1 TTTTGGATTTTGGTTGATCCCATGAAAAACCA
* * ** *
7898084 TTTTTAAAGG-TTGTGGTTGAGCCTTTGAAAAACTA
1 -TTTT---GGATTTTGGTTGATCCCATGAAAAACCA
* *
7898119 -TTTGTAGTTTTGGTTAATCCCATGAAAAACCA
1 TTTTGGA-TTTTGGTTGATCCCATGAAAAACCA
* * ** *
7898151 TTGTTAAAAGG-TTGTGGTTGAGCCTTTGAAAAACTA
1 TT-TT----GGATTTTGGTTGATCCCATGAAAAACCA
*
7898187 TTTTGGATTTTGGTTGATCCCATGAAAAATCA
1 TTTTGGATTTTGGTTGATCCCATGAAAAACCA
7898219 TT
1 TT
7898221 ATTAAAGGTA
Statistics
Matches: 99, Mismatches: 25, Indels: 25
0.66 0.17 0.17
Matches are distributed among these distances:
30 1 0.01
31 2 0.02
32 40 0.40
33 8 0.08
34 2 0.02
35 22 0.22
36 23 0.23
38 1 0.01
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (32 bp):
TTTTGGATTTTGGTTGATCCCATGAAAAACCA
Found at i:7903669 original size:21 final size:21
Alignment explanation
Indices: 7903645--7903685 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7903635 TCTCTCCCAT
* *
7903645 CTGAAATCGCTCTTCTCAAAA
1 CTGAAACCCCTCTTCTCAAAA
*
7903666 CTGAAACCCCTCTTTTCAAA
1 CTGAAACCCCTCTTCTCAAA
7903686 CTCTCTAAAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.32, G:0.07, T:0.29
Consensus pattern (21 bp):
CTGAAACCCCTCTTCTCAAAA
Found at i:7906531 original size:73 final size:73
Alignment explanation
Indices: 7906427--7906602 Score: 219
Period size: 73 Copynumber: 2.4 Consensus size: 73
7906417 GACTTAGTTG
* * * **
7906427 ACTAAGAAGCATGGTTAGTCAACTAAGAGCTTACTACTAAAAACTTTAGTTACAAGACAGAGATG
1 ACTAAGAAGCA-AGTTAGTCAACTAAGAGCTTACTACTAAAAACTTCAGTTACAAGACAAAGACA
7906492 ACTTAATCA
65 ACTTAATCA
* * *
7906501 ACTGAA-AAGCAAGTTAGTCAACTAAGAGCTTATTACTAGAAACTTCAGTTACAAGATAAAGACA
1 ACT-AAGAAGCAAGTTAGTCAACTAAGAGCTTACTACTAAAAACTTCAGTTACAAGACAAAGACA
*
7906565 ACTTAATCG
65 ACTTAATCA
* * *
7906574 ACTAAGAAGCATGTTAATCAAGTAAGAGC
1 ACTAAGAAGCAAGTTAGTCAACTAAGAGC
7906603 ACTTTATCTT
Statistics
Matches: 88, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
72 2 0.02
73 76 0.86
74 8 0.09
75 2 0.02
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.24
Consensus pattern (73 bp):
ACTAAGAAGCAAGTTAGTCAACTAAGAGCTTACTACTAAAAACTTCAGTTACAAGACAAAGACAA
CTTAATCA
Found at i:7907101 original size:67 final size:68
Alignment explanation
Indices: 7907008--7907139 Score: 203
Period size: 67 Copynumber: 2.0 Consensus size: 68
7906998 GAAAATTTAG
* * * *
7907008 TTTTAGGTTTTGGTTGATCCCGTGAAAAATTATTGTT-AAAGGTTATGGTCGAGCTTTTGAAAAA
1 TTTTAGATTTTGGTTGATCCCATGAAAAATCATTGTTAAAAGGTTATGGTCGAGCTTTCGAAAAA
7907072 TCA
66 TCA
* *
7907075 TTTTAGATTTTGGTTGATCCCATGAAAAATCATTGTTAAAATGTTATGGTTGAGCTTTCGAAAAA
1 TTTTAGATTTTGGTTGATCCCATGAAAAATCATTGTTAAAAGGTTATGGTCGAGCTTTCGAAAAA
7907140 CTATTTTGGG
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
67 34 0.59
68 24 0.41
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.40
Consensus pattern (68 bp):
TTTTAGATTTTGGTTGATCCCATGAAAAATCATTGTTAAAAGGTTATGGTCGAGCTTTCGAAAAA
TCA
Found at i:7907160 original size:68 final size:67
Alignment explanation
Indices: 7907008--7907161 Score: 184
Period size: 68 Copynumber: 2.3 Consensus size: 67
7906998 GAAAATTTAG
* * * * *
7907008 TTTTAGGTTTTGGTTGATCCCGTGAAAAATTATTGTTAAAGGTTATGGTCGAGCTTTTGAAAAAT
1 TTTTAGATTTTAGTTGATCCCATGAAAAATCATTGTTAAAGGTTATGGTCGAGCTTTCGAAAAAT
7907073 CA
66 CA
* * *
7907075 TTTTAGATTTTGGTTGATCCCATGAAAAATCATTGTTAAAATGTTATGGTTGAGCTTTCGAAAAA
1 TTTTAGATTTTAGTTGATCCCATGAAAAATCATTGTT-AAAGGTTATGGTCGAGCTTTCGAAAAA
7907140 -CTA
65 TC-A
* * *
7907143 TTTTGGGTTTTATTTGATC
1 TTTTAGATTTTAGTTGATC
7907162 AAACCATTGT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
67 35 0.47
68 40 0.53
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (67 bp):
TTTTAGATTTTAGTTGATCCCATGAAAAATCATTGTTAAAGGTTATGGTCGAGCTTTCGAAAAAT
CA
Found at i:7908769 original size:21 final size:20
Alignment explanation
Indices: 7908706--7908769 Score: 53
Period size: 21 Copynumber: 3.2 Consensus size: 20
7908696 AACTTAATCG
7908706 ACTAAGAAGCATGGTTAGTCA
1 ACTAAGAAG-ATGGTTAGTCA
* * * *
7908727 A-TTAGAAGA--CTTAATCG
1 ACTAAGAAGATGGTTAGTCA
7908744 ACTAAGAAGTATGGTTAGTCA
1 ACTAAGAAG-ATGGTTAGTCA
7908765 ACTAA
1 ACTAA
7908770 AAGCACTTTG
Statistics
Matches: 31, Mismatches: 8, Indels: 8
0.66 0.17 0.17
Matches are distributed among these distances:
17 6 0.19
18 6 0.19
19 2 0.06
20 6 0.19
21 11 0.35
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.27
Consensus pattern (20 bp):
ACTAAGAAGATGGTTAGTCA
Found at i:7910048 original size:20 final size:21
Alignment explanation
Indices: 7910023--7910075 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
7910013 GGCTATAGAG
*
7910023 AATATGCAAAAT-AGGTGGCC
1 AATATGCAAAATAAGGTAGCC
7910043 AATATG-ACAAATGAAGGTAGCC
1 AATATGCA-AAAT-AAGGTAGCC
*
7910065 AATATCCAAAA
1 AATATGCAAAA
7910076 CATATCATCC
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
19 1 0.04
20 10 0.37
22 15 0.56
23 1 0.04
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (21 bp):
AATATGCAAAATAAGGTAGCC
Found at i:7911916 original size:39 final size:39
Alignment explanation
Indices: 7911862--7911986 Score: 184
Period size: 39 Copynumber: 3.3 Consensus size: 39
7911852 CTATCTTTCA
7911862 AGGATCAAGCATAACCTATACAAAAGCCATTGCCTTTTT
1 AGGATCAAGCATAACCTATACAAAAGCCATTGCCTTTTT
7911901 AGGATCAAGCATAACCTATACAAAAGCCATTGCC-TTTT
1 AGGATCAAGCATAACCTATACAAAAGCCATTGCCTTTTT
* * * **
7911939 AGGATCAAGCATAACCT-T-TATAAGTCATTGCCTTTCA
1 AGGATCAAGCATAACCTATACAAAAGCCATTGCCTTTTT
7911976 AGGATCAAGCA
1 AGGATCAAGCA
7911987 CAATCTTTAC
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
36 11 0.14
37 14 0.17
38 21 0.26
39 34 0.43
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.27
Consensus pattern (39 bp):
AGGATCAAGCATAACCTATACAAAAGCCATTGCCTTTTT
Found at i:7912049 original size:37 final size:36
Alignment explanation
Indices: 7911934--7912054 Score: 97
Period size: 37 Copynumber: 3.3 Consensus size: 36
7911924 AAGCCATTGC
* * * * *
7911934 CTTTT-AGGATCAAGCATAACCTTTATAAGTCATTGC
1 CTTTTAAGGATCAAGCATAACTTTTACAACT-AATGT
* *
7911970 CTTTCAAGGATCAAGCACAA-TCTTTACAAACT-A-GT
1 CTTTTAAGGATCAAGCATAACT-TTTAC-AACTAATGT
7912005 ACATTTTAAGGATCAAGCATAACTTTTACAACTAAATGT
1 -C-TTTTAAGGATCAAGCATAACTTTTACAACT-AATGT
7912044 CTTTTAAGGAT
1 CTTTTAAGGAT
7912055 AAAGGATAGT
Statistics
Matches: 67, Mismatches: 9, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
35 1 0.01
36 9 0.13
37 49 0.73
38 6 0.09
39 2 0.03
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (36 bp):
CTTTTAAGGATCAAGCATAACTTTTACAACTAATGT
Found at i:7913221 original size:25 final size:25
Alignment explanation
Indices: 7913193--7913248 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
7913183 GTGGTCACAA
* * *
7913193 CCACGTATATCAA-CTCGTGGCCTTG
1 CCACGTATAACAATC-CATGGCCTAG
7913218 CCACGTATAACAATCCATGGCCTAG
1 CCACGTATAACAATCCATGGCCTAG
7913243 CCACGT
1 CCACGT
7913249 TTAATAGCCC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 26 0.96
26 1 0.04
ACGTcount: A:0.25, C:0.34, G:0.18, T:0.23
Consensus pattern (25 bp):
CCACGTATAACAATCCATGGCCTAG
Found at i:7915538 original size:29 final size:30
Alignment explanation
Indices: 7915506--7915571 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 30
7915496 AATTGAACCT
*
7915506 TTAA-TTTTTAATAATTACAACTT-CACCCC
1 TTAACTTTTCAATAATTACAA-TTCCACCCC
* *
7915535 TTAACTTTTCATTATTTACAATTCCACCCC
1 TTAACTTTTCAATAATTACAATTCCACCCC
*
7915565 TTGACTT
1 TTAACTT
7915572 CTTATTCTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
29 6 0.19
30 25 0.81
ACGTcount: A:0.29, C:0.26, G:0.02, T:0.44
Consensus pattern (30 bp):
TTAACTTTTCAATAATTACAATTCCACCCC
Found at i:7915563 original size:30 final size:29
Alignment explanation
Indices: 7915520--7915586 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 29
7915510 TTTTTAATAA
7915520 TTACAACTTCACCCCTTAACTT-TTCATTAT
1 TTACAA-TTCACCCCTTAACTTCTT-ATTAT
* *
7915550 TTACAATTCCACCCCTTGACTTCTTATTCT
1 TTACAATT-CACCCCTTAACTTCTTATTAT
7915580 TTACAAT
1 TTACAAT
7915587 AAGTACTCCC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 2 0.06
30 29 0.88
31 2 0.06
ACGTcount: A:0.25, C:0.30, G:0.01, T:0.43
Consensus pattern (29 bp):
TTACAATTCACCCCTTAACTTCTTATTAT
Found at i:7922182 original size:37 final size:37
Alignment explanation
Indices: 7922093--7922225 Score: 131
Period size: 37 Copynumber: 3.5 Consensus size: 37
7922083 ATATCAACTG
* * * *
7922093 CCTTTCGAGGATCAATCATAACTTATACAAAATTCACTA
1 CCTTTCAAGGATCAAGCACAACTTATAC--AAGTCACTA
* * * *
7922132 CCTTTCTAGGATCAAGCACAACCTATACAAGTCGCTG
1 CCTTTCAAGGATCAAGCACAACTTATACAAGTCACTA
* * *
7922169 CCTTTCAAGGATCAAGTACAACTTTTACAAGCCACTA
1 CCTTTCAAGGATCAAGCACAACTTATACAAGTCACTA
* *
7922206 CCTTTTAAGAATCAAGCACA
1 CCTTTCAAGGATCAAGCACA
7922226 GGCTTTACAA
Statistics
Matches: 77, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
37 53 0.69
39 24 0.31
ACGTcount: A:0.35, C:0.26, G:0.11, T:0.27
Consensus pattern (37 bp):
CCTTTCAAGGATCAAGCACAACTTATACAAGTCACTA
Found at i:7928606 original size:9 final size:9
Alignment explanation
Indices: 7928594--7928643 Score: 52
Period size: 9 Copynumber: 5.7 Consensus size: 9
7928584 TTCTTCTTTT
7928594 TTTTTTAAA
1 TTTTTTAAA
7928603 TTTTTTAAA
1 TTTTTTAAA
*
7928612 GATTTTTAAA
1 -TTTTTTAAA
7928622 --TTTTAAA
1 TTTTTTAAA
7928629 TTTTTCT-AA
1 TTTTT-TAAA
7928638 TTTTTT
1 TTTTTT
7928644 TTATTTTGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
7 7 0.19
8 1 0.03
9 19 0.53
10 9 0.25
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (9 bp):
TTTTTTAAA
Found at i:7928876 original size:19 final size:18
Alignment explanation
Indices: 7928846--7928900 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 18
7928836 GAATTTGACT
7928846 AACAAT-AAAATAAAATA
1 AACAATAAAAATAAAATA
7928863 AGACAATAAAAATAAAATA
1 A-ACAATAAAAATAAAATA
7928882 AAGCACATAAAAAATAAAA
1 AA-CA-AT-AAAAATAAAA
7928901 ACACATATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
17 1 0.03
18 6 0.18
19 14 0.42
20 2 0.06
21 10 0.30
ACGTcount: A:0.75, C:0.07, G:0.04, T:0.15
Consensus pattern (18 bp):
AACAATAAAAATAAAATA
Found at i:7929132 original size:59 final size:58
Alignment explanation
Indices: 7929008--7929157 Score: 156
Period size: 59 Copynumber: 2.6 Consensus size: 58
7928998 CACCATGCTC
** * * * *
7929008 GACCTATAACAAAATAAGTTCAATTTAAAAATTGAAATTTCTAAACTTGATTTAAATTT
1 GACCTATCTCAAAATAAGTTCGATTT-GAAATTGAAATTTCTAAACTTAATCTAAATTT
* * * *
7929067 GACCTATCTCAAAATAAGTTCGATTTGAAATTTAAAGTTTTTAAATTTAATCTAACTTT
1 GACCTATCTCAAAATAAGTTCGATTTGAAATTGAAA-TTTCTAAACTTAATCTAAATTT
* * * *
7929126 GTCCTATCTCAAAATATGTTTGACTTGAAATT
1 GACCTATCTCAAAATAAGTTCGATTTGAAATT
7929158 AAGATTGTCA
Statistics
Matches: 76, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
58 8 0.11
59 68 0.89
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.40
Consensus pattern (58 bp):
GACCTATCTCAAAATAAGTTCGATTTGAAATTGAAATTTCTAAACTTAATCTAAATTT
Found at i:7929389 original size:112 final size:112
Alignment explanation
Indices: 7929167--7929389 Score: 261
Period size: 112 Copynumber: 2.0 Consensus size: 112
7929157 TAAGATTGTC
* * * * *
7929167 AGACTTGATCTAGGCTCGATCTACCTCAAAATAGGTTCGATATAAAAAATTGAAATTCCTAAACT
1 AGACTTGATCTAGGCTCGACCTACCTCAAAACAAGTTCGATAAAAAAAATTGAAACTCCTAAACT
* ** * * * * *
7929232 TGATTTAGGCTTGACTTATCTTAAAGCAAGTTCGATTTGAGATTCTT
66 TGATCTAGGCTCAACCTATCTCAAAACAAGTTCAATTTGAAATTCTT
* *
7929279 AGACTTGATCTAGGCTCGACCTATCTCAAAACAAGTTTGATTAAAAAAAATTGAAACTCCTAAAC
1 AGACTTGATCTAGGCTCGACCTACCTCAAAACAAGTTCGA-TAAAAAAAATTGAAACTCCTAAAC
* *
7929344 TTGATCTAGG-TCAACCTATCTCAAAATAGGTTCAACTTT-AAATTCT
65 TTGATCTAGGCTCAACCTATCTCAAAACAAGTTCAA-TTTGAAATTCT
7929390 CTAATGCCAA
Statistics
Matches: 92, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
112 58 0.63
113 34 0.37
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (112 bp):
AGACTTGATCTAGGCTCGACCTACCTCAAAACAAGTTCGATAAAAAAAATTGAAACTCCTAAACT
TGATCTAGGCTCAACCTATCTCAAAACAAGTTCAATTTGAAATTCTT
Found at i:7930396 original size:15 final size:15
Alignment explanation
Indices: 7930376--7930410 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
7930366 TCATTTTTTC
7930376 TTTTTATTTATATAT
1 TTTTTATTTATATAT
* *
7930391 TTTTTATTTTTTTAT
1 TTTTTATTTATATAT
7930406 TTTTT
1 TTTTT
7930411 TAAGTGTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTATTTATATAT
Found at i:7935154 original size:18 final size:19
Alignment explanation
Indices: 7935131--7935170 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
7935121 CAAATGGAAG
*
7935131 ATTTTA-GAGTAAAATAAT
1 ATTTTATGAATAAAATAAT
*
7935149 ATTTTATTAATAAAATAAT
1 ATTTTATGAATAAAATAAT
7935168 ATT
1 ATT
7935171 AAAATATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (19 bp):
ATTTTATGAATAAAATAAT
Found at i:7939640 original size:20 final size:20
Alignment explanation
Indices: 7939580--7939640 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 20
7939570 CTTGAAGAAC
* * *
7939580 ATCTATGGATAGATGACCAG
1 ATCTATTGATAGATGGCCAT
* * *
7939600 ATCTATCT-ATTGGTGGTCAT
1 ATCTAT-TGATAGATGGCCAT
7939620 ATCTATTGATAGATGGCCAT
1 ATCTATTGATAGATGGCCAT
7939640 A
1 A
7939641 AAAAACCTTC
Statistics
Matches: 30, Mismatches: 9, Indels: 4
0.70 0.21 0.09
Matches are distributed among these distances:
19 1 0.03
20 29 0.97
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (20 bp):
ATCTATTGATAGATGGCCAT
Found at i:7971003 original size:6 final size:6
Alignment explanation
Indices: 7970962--7971023 Score: 54
Period size: 6 Copynumber: 9.8 Consensus size: 6
7970952 ATAAAAGAAT
* *
7970962 GAAAAG GAAAAA GAATAAA -AAAAA GAAACCAA GAAAAA GAAAAGT GAAAAA
1 GAAAAA GAAAAA GAA-AAA GAAAAA GAAA--AA GAAAAA GAAAA-A GAAAAA
*
7971013 GATAAA GAAAA
1 GAAAAA GAAAA
7971024 TGGGTGTGAC
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
5 3 0.07
6 29 0.63
7 8 0.17
8 6 0.13
ACGTcount: A:0.74, C:0.03, G:0.18, T:0.05
Consensus pattern (6 bp):
GAAAAA
Found at i:7971014 original size:19 final size:18
Alignment explanation
Indices: 7970962--7971023 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 18
7970952 ATAAAAGAAT
7970962 GAAAAGGAAAAAGAATAAA
1 GAAAAGGAAAAAGAA-AAA
*
7970981 -AAAAAGAAACCAAGAAAAA
1 GAAAAGGAAA--AAGAAAAA
*
7971000 GAAAAGTGAAAAAGATAAA
1 GAAAAG-GAAAAAGAAAAA
7971019 GAAAA
1 GAAAA
7971024 TGGGTGTGAC
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
18 8 0.22
19 15 0.42
20 9 0.25
21 4 0.11
ACGTcount: A:0.74, C:0.03, G:0.18, T:0.05
Consensus pattern (18 bp):
GAAAAGGAAAAAGAAAAA
Found at i:7971297 original size:21 final size:21
Alignment explanation
Indices: 7971268--7971332 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 21
7971258 CCACTACCAA
*
7971268 AAAGAAAAGA-AAAATAGGAAG
1 AAAGGAAAGAGAAAA-AGGAAG
* *
7971289 AAAGGAAAGAGAGAAAGGGAG
1 AAAGGAAAGAGAAAAAGGAAG
7971310 AAAGGAGGAAGAAGAAAAAGGAA
1 AAAGGA--AAG-AGAAAAAGGAA
7971333 AGGAAGGGTT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
21 20 0.57
22 3 0.09
23 3 0.09
24 9 0.26
ACGTcount: A:0.65, C:0.00, G:0.34, T:0.02
Consensus pattern (21 bp):
AAAGGAAAGAGAAAAAGGAAG
Found at i:7979672 original size:73 final size:73
Alignment explanation
Indices: 7979551--7979764 Score: 254
Period size: 73 Copynumber: 2.9 Consensus size: 73
7979541 GACAGAATGC
* * * *
7979551 TCTTAGTTGACTAAGTCATCTCTGTGC-CTGAACTCAGTTTCTGACAGTAGGCTCTTAGTCGATT
1 TCTTAGTTGATTAAGTCATTTCTGT-CTCTGAACCCAGTTTCTGACAGTAGGCTCTTAGTCGACT
7979615 AACAAAACT
65 AACAAAACT
* * * *
7979624 TCTTAGTTGATTAAGTCGTTTCTATCTCTGAACCCAGTTTCTGGCAGTAAGG-TCTTAGTTGACT
1 TCTTAGTTGATTAAGTCATTTCTGTCTCTGAACCCAGTTTCTGACAGT-AGGCTCTTAGTCGACT
7979688 AACAAAACT
65 AACAAAACT
* * * * * *
7979697 TTTTAGTCGATTAAGTCTTTTTTGTCTCTAAACCCAGTTTCTGACAGTAAGCTCTTAG-CTGACT
1 TCTTAGTTGATTAAGTCATTTCTGTCTCTGAACCCAGTTTCTGACAGTAGGCTCTTAGTC-GACT
7979761 AACA
65 AACA
7979765 TTGTCTTTGG
Statistics
Matches: 120, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
72 3 0.03
73 114 0.95
74 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.37
Consensus pattern (73 bp):
TCTTAGTTGATTAAGTCATTTCTGTCTCTGAACCCAGTTTCTGACAGTAGGCTCTTAGTCGACTA
ACAAAACT
Found at i:7980184 original size:20 final size:18
Alignment explanation
Indices: 7980152--7980194 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
7980142 TAAATAATAA
7980152 TATTAAAATTTT-AATATG
1 TATTAAAATTTTAAAT-TG
7980170 TATTAAAACTATTTAAATTG
1 TATTAAAA-T-TTTAAATTG
7980190 TATTA
1 TATTA
7980195 TACAATGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 8 0.36
19 1 0.05
20 10 0.45
21 3 0.14
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (18 bp):
TATTAAAATTTTAAATTG
Found at i:7981834 original size:52 final size:53
Alignment explanation
Indices: 7981692--7981891 Score: 187
Period size: 53 Copynumber: 3.9 Consensus size: 53
7981682 AGTTATCACT
* ** * *
7981692 TCCCATTTAAAAGCAAGAATCTTTTTGTGGATTATGTATGGGTTATCACTTGA
1 TCCCATTAAAAAGCAAGAATCTCCTTGTGGATTATGTAAGGGTTATTACTTGA
** * * * * *
7981745 TGACATAAAAAAACAAGAATCTCTTTGTGGATTGTGTAAGAGTTATTACTTGA
1 TCCCATTAAAAAGCAAGAATCTCCTTGTGGATTATGTAAGGGTTATTACTTGA
* * *
7981798 TCCCATTAAAAAGCAAGAATC-CCTTATGGATTGTGTAAGGGTTATTGC-T--
1 TCCCATTAAAAAGCAAGAATCTCCTTGTGGATTATGTAAGGGTTATTACTTGA
* * *
7981847 TCCTATTCAAAAGCAAGAATC-CCTT-TGTGATTATGTAAAGGTTAT
1 TCCCATTAAAAAGCAAGAATCTCCTTGTG-GATTATGTAAGGGTTAT
7981892 CGCTTCTTGT
Statistics
Matches: 124, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
48 2 0.02
49 38 0.31
51 1 0.01
52 23 0.19
53 60 0.48
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (53 bp):
TCCCATTAAAAAGCAAGAATCTCCTTGTGGATTATGTAAGGGTTATTACTTGA
Found at i:7981884 original size:49 final size:49
Alignment explanation
Indices: 7981752--7981915 Score: 177
Period size: 49 Copynumber: 3.3 Consensus size: 49
7981742 TGATGACATA
* * * * *
7981752 AAAAAACAAGAATCTCTTTGTGGATTGTGTAAGAGTTATTACTTGATCCCATT
1 AAAAAGCAAGAATCCCTTTGT-GATTGTGTAAGGGTTATTGC-T--TCCTATT
7981805 AAAAAGCAAGAATCCCTTATG-GATTGTGTAAGGGTTATTGCTTCCTATT
1 AAAAAGCAAGAATCCCTT-TGTGATTGTGTAAGGGTTATTGCTTCCTATT
* * * * * *
7981854 CAAAAGCAAGAATCCCTTTGTGATTATGTAAAGGTTATCGCTTCTTGTT
1 AAAAAGCAAGAATCCCTTTGTGATTGTGTAAGGGTTATTGCTTCCTATT
7981903 AAAAAGCAAGAAT
1 AAAAAGCAAGAAT
7981916 TTTTTAACAA
Statistics
Matches: 97, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
48 2 0.02
49 58 0.60
51 1 0.01
52 18 0.19
53 16 0.16
54 2 0.02
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (49 bp):
AAAAAGCAAGAATCCCTTTGTGATTGTGTAAGGGTTATTGCTTCCTATT
Found at i:7984348 original size:27 final size:29
Alignment explanation
Indices: 7984307--7984370 Score: 82
Period size: 27 Copynumber: 2.3 Consensus size: 29
7984297 TAATTTTCAA
7984307 TTATAACTTAGTTATTTTT-AGT-AGTT-T
1 TTATAA-TTAGTTATTTTTAAGTGAGTTAT
7984334 TTATAATTAGTTTATTTTTAAGTGAGTTAT
1 TTATAATTAG-TTATTTTTAAGTGAGTTAT
7984364 TT-TAATT
1 TTATAATT
7984371 TTATGTTTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
26 4 0.12
27 14 0.42
28 3 0.09
29 9 0.27
30 3 0.09
ACGTcount: A:0.28, C:0.02, G:0.11, T:0.59
Consensus pattern (29 bp):
TTATAATTAGTTATTTTTAAGTGAGTTAT
Found at i:7988552 original size:73 final size:72
Alignment explanation
Indices: 7988420--7988631 Score: 307
Period size: 73 Copynumber: 2.9 Consensus size: 72
7988410 AACATTATCA
* * * *
7988420 CTTAGTTGACTAAGTCATCTTTGTCCTGAACCTAGTTTCTAATAGTAGGCTCTTAGTCGACTAAC
1 CTTAGTCGATTAAGTCATCTTTGTCCTGAACCTAGTTTCTAGTAGTAAGCTCTTAGTCGACTAAC
7988485 AAAACTT
66 AAAACTT
* * *
7988492 CTTAGTCGATTAAGTCATTTTTGTCTCTGAACCCAGTTTCTAGCAGTAAGCTCTTAGTCGACTAA
1 CTTAGTCGATTAAGTCATCTTTGTC-CTGAACCTAGTTTCTAGTAGTAAGCTCTTAGTCGACTAA
7988557 CAAAACTT
65 CAAAACTT
** * *
7988565 CTTAGTCGATTAAGTCGCCTTTATCCCTGAACCTAGTTTCTAGTAGTAAGCTTTTAGTCGACTAA
1 CTTAGTCGATTAAGTCATCTTTGT-CCTGAACCTAGTTTCTAGTAGTAAGCTCTTAGTCGACTAA
7988630 CA
65 CA
7988632 CTGTCTCTTG
Statistics
Matches: 124, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
72 22 0.18
73 101 0.81
74 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.36
Consensus pattern (72 bp):
CTTAGTCGATTAAGTCATCTTTGTCCTGAACCTAGTTTCTAGTAGTAAGCTCTTAGTCGACTAAC
AAAACTT
Found at i:8006883 original size:21 final size:20
Alignment explanation
Indices: 8006845--8006883 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
8006835 ATAGGTAAAT
**
8006845 TTATTAAATTAATTTACTTC
1 TTATTAAATTAAAATACTTC
8006865 TTATTAAAATTAAAATACT
1 TTATT-AAATTAAAATACT
8006884 ATAACAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.49
Consensus pattern (20 bp):
TTATTAAATTAAAATACTTC
Found at i:8009636 original size:78 final size:78
Alignment explanation
Indices: 8009520--8009684 Score: 203
Period size: 78 Copynumber: 2.1 Consensus size: 78
8009510 TAGTAGAGAC
** *
8009520 CATACCATTATCCACAAGAAATGTCCTCTATAATGGGGA-CTATACCATCATCCA-AGAAATGTC
1 CATACCATTATCCACAAGAAATGTCCTAGATAACGGGGATC-ATACCATCATCCACA-AAATGTC
8009583 CTAGATAATGGGGA-
64 CTAGATAATGGGGAT
* * *
8009597 CAGTACCATTATTCACACA-AAATGTCCTAGATAACGGGGATCATACCATTATCCACAAATTGTC
1 CA-TACCATTATCCACA-AGAAATGTCCTAGATAACGGGGATCATACCATCATCCACAAAATGTC
*
8009661 TTAGATAATGGGGAT
64 CTAGATAATGGGGAT
8009676 CATACCATT
1 CATACCATT
8009685 GTCCTTGTGA
Statistics
Matches: 76, Mismatches: 7, Indels: 9
0.83 0.08 0.10
Matches are distributed among these distances:
77 2 0.03
78 69 0.91
79 5 0.07
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.27
Consensus pattern (78 bp):
CATACCATTATCCACAAGAAATGTCCTAGATAACGGGGATCATACCATCATCCACAAAATGTCCT
AGATAATGGGGAT
Found at i:8009666 original size:38 final size:38
Alignment explanation
Indices: 8009520--8009684 Score: 192
Period size: 38 Copynumber: 4.2 Consensus size: 38
8009510 TAGTAGAGAC
**
8009520 CATACCATTATCCACAAGAAATGTCCTCTATAATGGGGA
1 CATACCATTATCCAC-AGAAATGTCCTAGATAATGGGGA
*
8009559 CTATACCATCATCCA-AGAAATGTCCTAGATAATGGGGA
1 C-ATACCATTATCCACAGAAATGTCCTAGATAATGGGGA
*
8009597 CAGTACCATTATTCACACA-AAATGTCCTAGATAACGGGGA
1 CA-TACCATTA-TC-CACAGAAATGTCCTAGATAATGGGGA
* *
8009637 TCATACCATTATCCACA-AATTGTCTTAGATAATGGGGA
1 -CATACCATTATCCACAGAAATGTCCTAGATAATGGGGA
8009675 TCATACCATT
1 -CATACCATT
8009685 GTCCTTGTGA
Statistics
Matches: 112, Mismatches: 8, Indels: 13
0.84 0.06 0.10
Matches are distributed among these distances:
37 1 0.01
38 61 0.54
39 5 0.04
40 42 0.38
41 3 0.03
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.27
Consensus pattern (38 bp):
CATACCATTATCCACAGAAATGTCCTAGATAATGGGGA
Found at i:8015663 original size:253 final size:253
Alignment explanation
Indices: 8015037--8016028 Score: 1323
Period size: 241 Copynumber: 4.0 Consensus size: 253
8015027 CAATGGTGAG
* * * * *
8015037 TTTGGCTTCTTGTATTGATAGGCAGGCTTTTGATAAACAGTTCATAAACGAACTTGTTAAAAGCT
1 TTTGGCTTGTTATATTGATAGGCAGGCTTTTGACAAACAGATCATAAACAAACTTGTTAAAAGCT
* * * * *
8015102 TGGTACTGAAT---AA--GT-T--G---TTTACCTTGAGTTTTGCTTTCCATCCATAAAAATTGA
66 CGGTACTGAATGAGAACTTTATGAGCTATTTACTTTGAGTTTTGCTTTCCTTTCATAAAAATTGA
*
8015156 ATCTAAATAAGTTTCATATATCGTTGAAAAGTTCATGCCACATACAATAAGAAAACTCATGGTTA
131 ATCTAAATAAGTTTCATATATCATTGAAAAGTTCATGCCACATACAATAAGAAAACTCATGGTTA
* * * *
8015221 AACAAAATTTGCAACTCAAAATCATGTTTTGGTGATTTCATATGGGTACAAGTCAAAGGTGA
196 AACAAAATTTGCAAATCAAAATCATGTTTT-GTGATTTAATGTGGGTACTAGTCAAA---GA
* * * * *
8015283 GTTTGGCTTGTTATATTTATAGGCAGGCTTTTGATAAACAGTTCGTAAACGAACTTGTTAAAAGC
1 -TTTGGCTTGTTATATTGATAGGCAGGCTTTTGACAAACAGATCATAAACAAACTTGTTAAAAGC
* ** * * * * *
8015348 TTGGTACTGAAAAAAAACTTTATGAGTTGTTTCCTTTGAATTTTGCTTTCCTTTCATAAAAATTG
65 TCGGTACTGAATGAGAACTTTATGAGCTATTTACTTTGAGTTTTGCTTTCCTTTCATAAAAATTG
* * * * *
8015413 AGTGTAAACAAGTTTTATATATCATTGAAAAGTTCATGCCACATACAATAAGAATACTCATGGTT
130 AATCTAAATAAGTTTCATATATCATTGAAAAGTTCATGCCACATACAATAAGAAAACTCATGGTT
*
8015478 AAACAAAATTTGCAAATC-AAATCATGTTTTGTTGATTTAATGTGGGTACTCGTCAAAGA
195 AAACAAAATTTGCAAATCAAAATCATGTTTTG-TGATTTAATGTGGGTACTAGTCAAAGA
*
8015537 TTTGGCTTGTTATATTGATAGGCAGGCTTTTGACAAACAGATCATAAACAAACTTGTTAAACGCT
1 TTTGGCTTGTTATATTGATAGGCAGGCTTTTGACAAACAGATCATAAACAAACTTGTTAAAAGCT
* * *
8015602 CGGTATTGAATGAGAACTTTATGAGCTATTTACTTTGGGTTTTGCTTTCCTTTCGTAAAAATTGA
66 CGGTACTGAATGAGAACTTTATGAGCTATTTACTTTGAGTTTTGCTTTCCTTTCATAAAAATTGA
* *
8015667 ATCTAAATAAGTTTTATATATCATTGAAAAGTTCATGCCACATACAATAAGAATACTCATGGTTA
131 ATCTAAATAAGTTTCATATATCATTGAAAAGTTCATGCCACATACAATAAGAAAACTCATGGTTA
8015732 AACAAAATTTGCAAATCAAAATCATGTTTTAGTGATTTAATGTGGGTACTAGTCAAAGA
196 AACAAAATTTGCAAATCAAAATCATGTTTT-GTGATTTAATGTGGGTACTAGTCAAAGA
8015791 TTTGGCTTG------T--TA-GC--G--TTTGACAAACAGATCATAAACAAACTTGTTAAAAGCT
1 TTTGGCTTGTTATATTGATAGGCAGGCTTTTGACAAACAGATCATAAACAAACTTGTTAAAAGCT
* *
8015843 CAGTACTGAATGAGAACTTTATGAGCTATTTACTTTGGGTTTTGCTTTCCTTTCATAAAAATTGA
66 CGGTACTGAATGAGAACTTTATGAGCTATTTACTTTGAGTTTTGCTTTCCTTTCATAAAAATTGA
* *
8015908 ATCTAAATAAGTTTCATATATCATTGAAAAGTTCATGCGACATACAATAAGAAAACTCATAGTTA
131 ATCTAAATAAGTTTCATATATCATTGAAAAGTTCATGCCACATACAATAAGAAAACTCATGGTTA
* *
8015973 AACAAAATTTGCAACTCAAAATCATGTTTTAATGATTTAATGTGGGTACTAGTCAA
196 AACAAAATTTGCAAATCAAAATCATGTTTT-GTGATTTAATGTGGGTACTAGTCAA
8016029 CAACTGACCA
Statistics
Matches: 678, Mismatches: 53, Indels: 34
0.89 0.07 0.04
Matches are distributed among these distances:
241 213 0.31
243 1 0.00
245 2 0.00
246 2 0.00
247 71 0.10
248 1 0.00
250 2 0.00
252 1 0.00
253 193 0.28
254 49 0.07
255 2 0.00
256 1 0.00
257 33 0.05
258 107 0.16
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.36
Consensus pattern (253 bp):
TTTGGCTTGTTATATTGATAGGCAGGCTTTTGACAAACAGATCATAAACAAACTTGTTAAAAGCT
CGGTACTGAATGAGAACTTTATGAGCTATTTACTTTGAGTTTTGCTTTCCTTTCATAAAAATTGA
ATCTAAATAAGTTTCATATATCATTGAAAAGTTCATGCCACATACAATAAGAAAACTCATGGTTA
AACAAAATTTGCAAATCAAAATCATGTTTTGTGATTTAATGTGGGTACTAGTCAAAGA
Found at i:8015975 original size:494 final size:491
Alignment explanation
Indices: 8015037--8016028 Score: 1316
Period size: 494 Copynumber: 2.0 Consensus size: 491
8015027 CAATGGTGAG
* * * *
8015037 TTTGGCTTCTTGTATTGATAGGCAGGCTTTTGATAAACAGTTCATAAACGAACTTGTTAAAAGCT
1 TTTGGCTTCTTATATTGATAGGCAGGCTTTTGACAAACAGATCATAAACAAACTTGTTAAAAGCT
*
8015102 TGGTACTGAATAAGTTGTTTACCTTGAGTTTTGCTTTCCATCCATAAAAATTGAATCTAAATAAG
66 CGGTACTGAATAAGTTGTTTACCTTGAGTTTTGCTTTCCATCCATAAAAATTGAATCTAAATAAG
*
8015167 TTTCATATATCGTTGAAAAGTTCATGCCACATACAATAAGAAAACTCATGGTTAAACAAAATTTG
131 TTTCATATATCATTGAAAAGTTCATGCCACATACAATAAGAAAACTCATGGTTAAACAAAATTTG
* * *
8015232 CAACTCAAAATCATGTTTTGGTGATTTCATATGGGTACAAGTCAAAGGTGAGTTTGGCTTGTTAT
196 CAAATCAAAATCATGTTTTAGTGATTTAATATGGGTACAAGTCAAA-G-GAGTTTGGCTTG----
* * * * **
8015297 ATTTATAGGCAGGCTTTTGATAAACAGTTCGTAAACGAACTTGTTAAAAGCTTGGTACTGAAAAA
255 --TTATAGGCA-GC-TTTGACAAACAGATCATAAACAAACTTGTTAAAAGCTCAGTACTGAAAAA
* * * * *
8015362 AAACTTTATGAGTTGTTTCCTTTGAATTTTGCTTTCCTTTCATAAAAATTGAGTGTAAACAAGTT
316 AAACTTTATGAGCTATTTACTTTGAATTTTGCTTTCCTTTCATAAAAATTGAATCTAAACAAGTT
* * *
8015427 TTATATATCATTGAAAAGTTCATGCCACATACAATAAGAATACTCATGGTTAAACAAAATTTGCA
381 TCATATATCATTGAAAAGTTCATGCCACATACAATAAGAAAACTCATAGTTAAACAAAATTTGCA
** *
8015492 AATC-AAATCATGTTTTGTTGATTTAATGTGGGTACTCGTCAAAGA
446 AATCAAAATCATGTTTTAATGATTTAATGTGGGTACTAGTCAAAGA
* *
8015537 TTTGGCTTGTTATATTGATAGGCAGGCTTTTGACAAACAGATCATAAACAAACTTGTTAAACGCT
1 TTTGGCTTCTTATATTGATAGGCAGGCTTTTGACAAACAGATCATAAACAAACTTGTTAAAAGCT
* * * * * * *
8015602 CGGTATTGAATGAGAACTTTATGAGCTATTTACTTTGGGTTTTGCTTTCCTTTCGTAAAAATTGA
66 CGGTACTGAAT---AA--GT-T--G---TTTACCTTGAGTTTTGCTTTCCATCCATAAAAATTGA
* *
8015667 ATCTAAATAAGTTTTATATATCATTGAAAAGTTCATGCCACATACAATAAGAATACTCATGGTTA
120 ATCTAAATAAGTTTCATATATCATTGAAAAGTTCATGCCACATACAATAAGAAAACTCATGGTTA
* *
8015732 AACAAAATTTGCAAATCAAAATCATGTTTTAGTGATTTAATGTGGGTACTAGTCAAA-GA-TTTG
185 AACAAAATTTGCAAATCAAAATCATGTTTTAGTGATTTAATATGGGTACAAGTCAAAGGAGTTTG
**
8015795 GCTTG-T-TA-GC-G-TTTGACAAACAGATCATAAACAAACTTGTTAAAAGCTCAGTACTGAATG
250 GCTTGTTATAGGCAGCTTTGACAAACAGATCATAAACAAACTTGTTAAAAGCTCAGTACTGAAAA
* ** *
8015855 AGAACTTTATGAGCTATTTACTTTGGGTTTTGCTTTCCTTTCATAAAAATTGAATCTAAATAAGT
315 AAAACTTTATGAGCTATTTACTTTGAATTTTGCTTTCCTTTCATAAAAATTGAATCTAAACAAGT
*
8015920 TTCATATATCATTGAAAAGTTCATGCGACATACAATAAGAAAACTCATAGTTAAACAAAATTTGC
380 TTCATATATCATTGAAAAGTTCATGCCACATACAATAAGAAAACTCATAGTTAAACAAAATTTGC
*
8015985 AACTCAAAATCATGTTTTAATGATTTAATGTGGGTACTAGTCAA
445 AAATCAAAATCATGTTTTAATGATTTAATGTGGGTACTAGTCAA
8016029 CAACTGACCA
Statistics
Matches: 433, Mismatches: 47, Indels: 29
0.85 0.09 0.06
Matches are distributed among these distances:
494 162 0.37
495 35 0.08
496 1 0.00
498 2 0.00
499 2 0.00
500 69 0.16
503 2 0.00
505 1 0.00
506 1 0.00
507 9 0.02
508 3 0.01
511 146 0.34
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.36
Consensus pattern (491 bp):
TTTGGCTTCTTATATTGATAGGCAGGCTTTTGACAAACAGATCATAAACAAACTTGTTAAAAGCT
CGGTACTGAATAAGTTGTTTACCTTGAGTTTTGCTTTCCATCCATAAAAATTGAATCTAAATAAG
TTTCATATATCATTGAAAAGTTCATGCCACATACAATAAGAAAACTCATGGTTAAACAAAATTTG
CAAATCAAAATCATGTTTTAGTGATTTAATATGGGTACAAGTCAAAGGAGTTTGGCTTGTTATAG
GCAGCTTTGACAAACAGATCATAAACAAACTTGTTAAAAGCTCAGTACTGAAAAAAAACTTTATG
AGCTATTTACTTTGAATTTTGCTTTCCTTTCATAAAAATTGAATCTAAACAAGTTTCATATATCA
TTGAAAAGTTCATGCCACATACAATAAGAAAACTCATAGTTAAACAAAATTTGCAAATCAAAATC
ATGTTTTAATGATTTAATGTGGGTACTAGTCAAAGA
Found at i:8017206 original size:12 final size:12
Alignment explanation
Indices: 8017189--8017216 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
8017179 CTTTGCTTGT
8017189 TCCTCTTCCTCC
1 TCCTCTTCCTCC
8017201 TCCTCTTCCTCC
1 TCCTCTTCCTCC
8017213 TCCT
1 TCCT
8017217 ATACATTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.00, C:0.57, G:0.00, T:0.43
Consensus pattern (12 bp):
TCCTCTTCCTCC
Found at i:8021695 original size:32 final size:33
Alignment explanation
Indices: 8021625--8021724 Score: 95
Period size: 32 Copynumber: 3.1 Consensus size: 33
8021615 TCAAACTTAA
* *
8021625 TTATAAA--TATTAATTTTTAATAT-ATATATT
1 TTATAAATTTATTTATTATTAATATAATATATT
8021655 TTATAAATTTATTTATTATTAATATAATAT-TT
1 TTATAAATTTATTTATTATTAATATAATATATT
*
8021687 ATTA-AAATTTA-TTATTTATTATTATAAATATGATT
1 -TTATAAATTTATTTA-TTATTAATAT-AATAT-ATT
8021722 TTA
1 TTA
8021725 AATTTTAAAT
Statistics
Matches: 59, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
30 7 0.12
31 3 0.05
32 32 0.54
33 12 0.20
34 3 0.05
35 2 0.03
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (33 bp):
TTATAAATTTATTTATTATTAATATAATATATT
Found at i:8022583 original size:21 final size:21
Alignment explanation
Indices: 8022547--8022626 Score: 90
Period size: 21 Copynumber: 3.7 Consensus size: 21
8022537 AGTGAACATG
8022547 GCGTGTAACAATTTTTAAACTT
1 GCGTGTAAC-ATTTTTAAACTT
*
8022569 GCGTGTAACATTTTTGAACTT
1 GCGTGTAACATTTTTAAACTT
* *
8022590 GCGTGCAACATTTTTGAATA-TA
1 GCGTGTAACATTTTT-AA-ACTT
*
8022612 GTGTGTAACATTTTT
1 GCGTGTAACATTTTT
8022627 TTAAATATGG
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
21 25 0.50
22 24 0.48
23 1 0.02
ACGTcount: A:0.28, C:0.12, G:0.17, T:0.42
Consensus pattern (21 bp):
GCGTGTAACATTTTTAAACTT
Found at i:8022633 original size:24 final size:24
Alignment explanation
Indices: 8022600--8022651 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
8022590 GCGTGCAACA
* **
8022600 TTTTTGAATATAGTGTGTAACATT
1 TTTTTAAATATAGCATGTAACATT
*
8022624 TTTTTAAATATGGCATGTAACATT
1 TTTTTAAATATAGCATGTAACATT
8022648 TTTT
1 TTTT
8022652 AAAAATAACT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.06, G:0.13, T:0.52
Consensus pattern (24 bp):
TTTTTAAATATAGCATGTAACATT
Found at i:8026495 original size:31 final size:31
Alignment explanation
Indices: 8026460--8026711 Score: 244
Period size: 31 Copynumber: 8.6 Consensus size: 31
8026450 AGAAAGAAAT
** *
8026460 AAATGTTGCCACACACCATGCATATCAAGTA
1 AAATGTTGTTACACGCCATGCATATCAAGTA
8026491 AAATGTTGTT-------ATGCATATCAAGTA
1 AAATGTTGTTACACGCCATGCATATCAAGTA
* * *
8026515 AAATATTGTTATACACCATGCATATCAAGTA
1 AAATGTTGTTACACGCCATGCATATCAAGTA
*
8026546 AAATGTTGTT-------ATGCATATCAACTA
1 AAATGTTGTTACACGCCATGCATATCAAGTA
* *
8026570 AAATGTTGTTATACTCCATGCATATCAAGTA
1 AAATGTTGTTACACGCCATGCATATCAAGTA
* ** *
8026601 AAATGTTGTTACATGCCATGTGTATCAAGTC
1 AAATGTTGTTACACGCCATGCATATCAAGTA
*
8026632 AAATATTGTTACACGCCATGCATATCAAGTA
1 AAATGTTGTTACACGCCATGCATATCAAGTA
* * *
8026663 AAATGTTGTTTCATGCCATGCATATCAAGTC
1 AAATGTTGTTACACGCCATGCATATCAAGTA
*
8026694 AAATGTTATTACACGCCA
1 AAATGTTGTTACACGCCA
8026712 ATGCTGACAC
Statistics
Matches: 183, Mismatches: 24, Indels: 28
0.78 0.10 0.12
Matches are distributed among these distances:
24 46 0.25
31 137 0.75
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (31 bp):
AAATGTTGTTACACGCCATGCATATCAAGTA
Found at i:8026509 original size:24 final size:24
Alignment explanation
Indices: 8026477--8026581 Score: 129
Period size: 24 Copynumber: 4.1 Consensus size: 24
8026467 GCCACACACC
8026477 ATGCATATCAAGTAAAATGTTGTT
1 ATGCATATCAAGTAAAATGTTGTT
*
8026501 ATGCATATCAAGTAAAATATTGTTAT
1 ATGCATATCAAGTAAAATGTTG-T-T
8026527 ACACCATGCATATCAAGTAAAATGTTGTT
1 -----ATGCATATCAAGTAAAATGTTGTT
*
8026556 ATGCATATCAACTAAAATGTTGTT
1 ATGCATATCAAGTAAAATGTTGTT
8026580 AT
1 AT
8026582 ACTCCATGCA
Statistics
Matches: 71, Mismatches: 3, Indels: 14
0.81 0.03 0.16
Matches are distributed among these distances:
24 46 0.65
25 1 0.01
26 1 0.01
29 1 0.01
30 1 0.01
31 21 0.30
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.36
Consensus pattern (24 bp):
ATGCATATCAAGTAAAATGTTGTT
Found at i:8026544 original size:55 final size:55
Alignment explanation
Indices: 8026472--8026672 Score: 285
Period size: 55 Copynumber: 3.5 Consensus size: 55
8026462 ATGTTGCCAC
8026472 ACACCATGCATATCAAGTAAAATGTTGTTATGCATATCAAGTAAAATATTGTTAT
1 ACACCATGCATATCAAGTAAAATGTTGTTATGCATATCAAGTAAAATATTGTTAT
* *
8026527 ACACCATGCATATCAAGTAAAATGTTGTTATGCATATCAACTAAAATGTTGTTAT
1 ACACCATGCATATCAAGTAAAATGTTGTTATGCATATCAAGTAAAATATTGTTAT
* * *
8026582 ACTCCATGCATATCAAGTAAAATGTTGTTACATGCCATGTGTATCAAGTCAAATATTGTTAC
1 ACACCATGCATATCAAGTAAAATGTTGTT--ATG-CA----TATCAAGTAAAATATTGTTAT
*
8026644 ACGCCATGCATATCAAGTAAAATGTTGTT
1 ACACCATGCATATCAAGTAAAATGTTGTT
8026673 TCATGCCATG
Statistics
Matches: 131, Mismatches: 8, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
55 81 0.62
57 3 0.02
58 2 0.02
62 45 0.34
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (55 bp):
ACACCATGCATATCAAGTAAAATGTTGTTATGCATATCAAGTAAAATATTGTTAT
Found at i:8027518 original size:44 final size:47
Alignment explanation
Indices: 8027410--8027534 Score: 157
Period size: 44 Copynumber: 2.7 Consensus size: 47
8027400 TAAACCCTAG
* * * *
8027410 CATGTCACAGATTTCTTCCATGGCGTGTCACAAACTTTGAACCTTAC
1 CATGTCATAGATTCCCTCCATGGCGTGTCACAAACTCTGAACCTTAC
* *
8027457 CATGTCATAGATGCCCTCCATGGTGTGTCACAAACTCT-AA-C-TAC
1 CATGTCATAGATTCCCTCCATGGCGTGTCACAAACTCTGAACCTTAC
* *
8027501 CATGTCATAGATTCCCTCAATGGCATGTCACAAA
1 CATGTCATAGATTCCCTCCATGGCGTGTCACAAA
8027535 TTTTGAGCCC
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
44 33 0.49
45 1 0.01
46 2 0.03
47 32 0.47
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (47 bp):
CATGTCATAGATTCCCTCCATGGCGTGTCACAAACTCTGAACCTTAC
Found at i:8027623 original size:23 final size:23
Alignment explanation
Indices: 8027586--8027637 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 23
8027576 CCATGCTGTC
* * *
8027586 TCACATATTCTCACCCTGGCCTA
1 TCACATATGCACACCATGGCCTA
* *
8027609 TCACATATGCACACCATGGCGTG
1 TCACATATGCACACCATGGCCTA
8027632 TCACAT
1 TCACAT
8027638 TCTCACACTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.25, C:0.35, G:0.13, T:0.27
Consensus pattern (23 bp):
TCACATATGCACACCATGGCCTA
Found at i:8027644 original size:23 final size:23
Alignment explanation
Indices: 8027618--8027670 Score: 65
Period size: 21 Copynumber: 2.4 Consensus size: 23
8027608 ATCACATATG
*
8027618 CACACCATGGCGTGTCACATTCT
1 CACACCATGGCGTGTCACATGCT
*
8027641 CACA-C-TAGCGTGTCACATGCT
1 CACACCATGGCGTGTCACATGCT
*
8027662 CTCACCATG
1 CACACCATG
8027671 TCATCTCACA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
21 17 0.71
22 2 0.08
23 5 0.21
ACGTcount: A:0.23, C:0.36, G:0.17, T:0.25
Consensus pattern (23 bp):
CACACCATGGCGTGTCACATGCT
Found at i:8032142 original size:21 final size:22
Alignment explanation
Indices: 8032107--8032150 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
8032097 CTCTTAAAGT
8032107 AATTTAAAATAAAATAACTTAA
1 AATTTAAAATAAAATAACTTAA
*
8032129 AATTT-AACTAAAATAACTTAA
1 AATTTAAAATAAAATAACTTAA
8032150 A
1 A
8032151 TTGATCACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (22 bp):
AATTTAAAATAAAATAACTTAA
Found at i:8034167 original size:28 final size:28
Alignment explanation
Indices: 8034095--8034214 Score: 111
Period size: 28 Copynumber: 4.3 Consensus size: 28
8034085 GGTATGGCAA
* * *
8034095 GTAAGAAAATAGAAATTAGTCAAGGTGT
1 GTAACAAAATAGAAATTAGTCAGGGCGT
* *
8034123 ATAA-AAAATAGAAATTAGTTAGGGCGT
1 GTAACAAAATAGAAATTAGTCAGGGCGT
* *
8034150 GTAACAAAATAGAAATTA-TACAGGACAT
1 GTAACAAAATAGAAATTAGT-CAGGGCGT
* * *
8034178 GTAACAAAATAGAGATTA-TACAAGGTGT
1 GTAACAAAATAGAAATTAGT-CAGGGCGT
8034206 GTAACAAAA
1 GTAACAAAA
8034215 GAAATATGTT
Statistics
Matches: 77, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
27 24 0.31
28 53 0.69
ACGTcount: A:0.50, C:0.07, G:0.20, T:0.23
Consensus pattern (28 bp):
GTAACAAAATAGAAATTAGTCAGGGCGT
Found at i:8034532 original size:28 final size:28
Alignment explanation
Indices: 8034498--8034619 Score: 115
Period size: 28 Copynumber: 4.4 Consensus size: 28
8034488 AGGTATGACA
8034498 TGTAACAAAATAGAAATTAGTCAAG-GTG
1 TGTAACAAAATAGAAATTA-TCAAGAGTG
**
8034526 TGTAACAAAATAGAAATTAGTC-AGAACG
1 TGTAACAAAATAGAAATTA-TCAAGAGTG
* * * *
8034554 TGTAATAAAATATAAATTATAAAGTGTG
1 TGTAACAAAATAGAAATTATCAAGAGTG
* * *
8034582 TGGAACAAAATAGAAATTAT-ACGGGGTG
1 TGTAACAAAATAGAAATTATCA-AGAGTG
8034610 TGTAACAAAA
1 TGTAACAAAA
8034620 GAAATATTTT
Statistics
Matches: 77, Mismatches: 14, Indels: 6
0.79 0.14 0.06
Matches are distributed among these distances:
27 4 0.05
28 73 0.95
ACGTcount: A:0.48, C:0.07, G:0.20, T:0.25
Consensus pattern (28 bp):
TGTAACAAAATAGAAATTATCAAGAGTG
Found at i:8034768 original size:405 final size:404
Alignment explanation
Indices: 8034008--8034802 Score: 1042
Period size: 405 Copynumber: 2.0 Consensus size: 404
8033998 CATTGTGTGC
* * * * *
8034008 AACATTGTATTATTAAATATATTGCATTCGAAATGTTATGAAATTTAAAAATAATGTGTAATAAA
1 AACAATGTATTATTAAATACATTACATTCGAAATGTTATGAAATTTAAAAATAATGTGCAACAAA
* *
8034073 AATTGGATTAAAGGTATGGCAAGTAAGAAAATAGAAATTAGTCAAGGTGTATAAAAAATAGAAAT
66 AATTGGATTAAAGGTATGACAAGTAACAAAATAGAAATTAGTCAAGGTGTATAAAAAATAGAAAT
* ** * * *
8034138 TAGTTAGGGCGTGTAACAAAATAGAAATTATACAGGACATGTAACAAAATAGAGATTATACAAGG
131 TAGTCAGAACGTGTAACAAAATAGAAATTATAAAGGACATGGAACAAAATAGAAATTATACAAGG
8034203 TGTGTAACAAAAGAAATATGTTTATAAATGTCTTGAAACTTCTCTAGTTAACTGTTCAATGCATG
196 TGTGTAACAAAAGAAATATGTTTATAAATGTCTTGAAACTTCTCTAGTTAACTGTTCAATGCATG
* * *
8034268 TTGCTTACATGTGCAGGACTGTATTATGATGCAACTAGATCTCAAAGAGTACGAGAAAGTTGAGA
261 TAGCTTACATGTGCAGGACTATATTATGATGCAACTAGATCTCAAAGAGTACAAGAAAGTTGAGA
* * *
8034333 TGAAATAAATGAAGGAACCGATCATGGTGAGTCCAACGAAGAAAGAGATGAAAGCGGATATCCTT
326 TGAAATAAATGAAGGAACCAATCATGGTGAGTCCAACAAAGAAAGAGATGAAAGCAGATATCCTT
8034398 CAAGCATTGCATGT
391 CAAGCATTGCATGT
* * *
8034412 AACAATGTATTATTAAATGCATTATATTC-AGAATGTTATGAAATTTAAAAATAGTGTGCAACAA
1 AACAATGTATTATTAAATACATTACATTCGA-AATGTTATGAAATTTAAAAATAATGTGCAACAA
* *
8034476 AAATTGGATTAAAGGTATGACATGTAACAAAATAGAAATTAGTCAAGGTGTGTAACAAAATAGAA
65 AAATTGGATTAAAGGTATGACAAGTAACAAAATAGAAATTAGTCAAGGTGTATAA-AAAATAGAA
* * ** *
8034541 ATTAGTCAGAACGTGTAATAAAATATAAATTATAAAGTG-TGTGGAACAAAATAGAAATTATACG
129 ATTAGTCAGAACGTGTAACAAAATAGAAATTATAAAG-GACATGGAACAAAATAGAAATTATACA
* * * * * *
8034605 GGGTGTGTAACAAAAGAAATATTTTTGTAAATGT-TATGAAGCTTCTTTGGTTAACTGTTCAATG
193 AGGTGTGTAACAAAAGAAATATGTTTATAAATGTCT-TGAAACTTCTCTAGTTAACTGTTCAATG
* * * * * *
8034669 CGTGTAGCTTACATGTGTAGGACTATATTTTGATGTAGA-TGGAT-TCTAAAGAGTACAAGAATG
257 CATGTAGCTTACATGTGCAGGACTATATTATGATGCA-ACTAGATCTC-AAAGAGTACAAGAAAG
* * ** * * * * * *
8034732 TTGAGGTGAAATAAATGGAGGAATTAATCGTGGTGAGTTCAACAAAGGAAGAGGTTAAAGTAGAT
320 TTGAGATGAAATAAATGAAGGAACCAATCATGGTGAGTCCAACAAAGAAAGAGATGAAAGCAGAT
8034797 ATCCTT
385 ATCCTT
8034803 GCTACTATAG
Statistics
Matches: 334, Mismatches: 51, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
403 1 0.00
404 108 0.32
405 223 0.67
406 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.30
Consensus pattern (404 bp):
AACAATGTATTATTAAATACATTACATTCGAAATGTTATGAAATTTAAAAATAATGTGCAACAAA
AATTGGATTAAAGGTATGACAAGTAACAAAATAGAAATTAGTCAAGGTGTATAAAAAATAGAAAT
TAGTCAGAACGTGTAACAAAATAGAAATTATAAAGGACATGGAACAAAATAGAAATTATACAAGG
TGTGTAACAAAAGAAATATGTTTATAAATGTCTTGAAACTTCTCTAGTTAACTGTTCAATGCATG
TAGCTTACATGTGCAGGACTATATTATGATGCAACTAGATCTCAAAGAGTACAAGAAAGTTGAGA
TGAAATAAATGAAGGAACCAATCATGGTGAGTCCAACAAAGAAAGAGATGAAAGCAGATATCCTT
CAAGCATTGCATGT
Found at i:8037291 original size:29 final size:29
Alignment explanation
Indices: 8037211--8037296 Score: 127
Period size: 29 Copynumber: 3.0 Consensus size: 29
8037201 GCCGCATGTG
* * * * *
8037211 TAATTGACAAAATATAGAAGGTGGGCGTG
1 TAATTGACAATATATATAAGGTTGGTGTA
8037240 TAATTGACAATATATATAAGGTTGGTGTA
1 TAATTGACAATATATATAAGGTTGGTGTA
8037269 TAATTGACAATATATATAAGGTTGGTGT
1 TAATTGACAATATATATAAGGTTGGTGT
8037297 GTCATGTAAG
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.37, C:0.05, G:0.24, T:0.34
Consensus pattern (29 bp):
TAATTGACAATATATATAAGGTTGGTGTA
Found at i:8039188 original size:22 final size:23
Alignment explanation
Indices: 8039151--8039197 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
8039141 ATATAAAATT
8039151 ATTTAGACTTAATTTTGATAATA
1 ATTTAGACTTAATTTTGATAATA
* * *
8039174 ATTTAG-CTTAGTTTTTATAGTA
1 ATTTAGACTTAATTTTGATAATA
8039196 AT
1 AT
8039198 GCATAGAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.34, C:0.04, G:0.11, T:0.51
Consensus pattern (23 bp):
ATTTAGACTTAATTTTGATAATA
Found at i:8050796 original size:28 final size:28
Alignment explanation
Indices: 8050727--8050886 Score: 122
Period size: 29 Copynumber: 5.5 Consensus size: 28
8050717 AACTTTAACG
* * *
8050727 TGTTTGCCTTAATTTAGACAAGAAAACA
1 TGTTTGTCTTAATTTAGACAAAAAAATA
* *
8050755 TGTTTGGTTTTAATTTAGATAAAAAAATA
1 TGTTT-GTCTTAATTTAGACAAAAAAATA
* *
8050784 TGTTTATCTTAATTTAAGATAAGAAAAATA
1 TGTTTGTCTTAATTT-AGACAA-AAAAATA
* ** * *
8050814 TTTTTTGTCTTAAACTAGACAAGAAAGTA
1 -TGTTTGTCTTAATTTAGACAAAAAAATA
* *
8050843 TATTTGTCTCAATTTAGACAAGATAAAATA
1 TGTTTGTCTTAATTTAGACAA-A-AAAATA
* *
8050873 TTTTTATCTTAATT
1 TGTTTGTCTTAATT
8050887 AAAGGCAAGA
Statistics
Matches: 103, Mismatches: 23, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
28 30 0.29
29 34 0.33
30 28 0.27
31 11 0.11
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.41
Consensus pattern (28 bp):
TGTTTGTCTTAATTTAGACAAAAAAATA
Found at i:8060702 original size:18 final size:19
Alignment explanation
Indices: 8060681--8060722 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
8060671 TTCTTACATT
8060681 AAAAT-TCTTTTATTATAAA
1 AAAATATCTTTTATTA-AAA
*
8060700 AAAATATTTTTTATTAAAA
1 AAAATATCTTTTATTAAAA
8060719 AAAA
1 AAAA
8060723 AGGGTGTGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (19 bp):
AAAATATCTTTTATTAAAA
Done.