Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397263.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_86.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8461613
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 85630 characters in sequence are not A, C, G, or T
File 18 of 18
Found at i:8061860 original size:10 final size:10
Alignment explanation
Indices: 8061847--8061872 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
8061837 TACATATATT
8061847 TATATGTATC
1 TATATGTATC
8061857 TATATGTATC
1 TATATGTATC
8061867 TATATG
1 TATATG
8061873 AATGACATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.31, C:0.08, G:0.12, T:0.50
Consensus pattern (10 bp):
TATATGTATC
Found at i:8073514 original size:29 final size:28
Alignment explanation
Indices: 8073468--8073561 Score: 109
Period size: 29 Copynumber: 3.3 Consensus size: 28
8073458 TGGTAGCTTT
*
8073468 AACATATTCGTCTTAATTTAGATAAGAA
1 AACATATTTGTCTTAATTTAGATAAGAA
* *
8073496 AACATATTTGATCTTAATTTAAATAGGAA
1 AACATATTTG-TCTTAATTTAGATAAGAA
* * *
8073525 AATATGTTTGTTTTAATTTAAGATAAGAA
1 AACATATTTGTCTTAATTT-AGATAAGAA
8073554 AA-ATATTT
1 AACATATTT
8073562 TTTGTTTTAA
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
28 22 0.40
29 33 0.60
ACGTcount: A:0.44, C:0.05, G:0.11, T:0.40
Consensus pattern (28 bp):
AACATATTTGTCTTAATTTAGATAAGAA
Found at i:8073545 original size:28 final size:28
Alignment explanation
Indices: 8073471--8073572 Score: 87
Period size: 29 Copynumber: 3.5 Consensus size: 28
8073461 TAGCTTTAAC
* * * * *
8073471 ATATTCGTCTTAATTTAGATAAGAAAAC
1 ATATTTGTTTTAATTTAAATAGGAAAAT
*
8073499 ATATTTGATCTTAATTTAAATAGGAAAAT
1 ATATTTG-TTTTAATTTAAATAGGAAAAT
* *
8073528 ATGTTTGTTTTAATTTAAGATAAGAAAAAT
1 ATATTTGTTTTAATTTAA-AT-AGGAAAAT
*
8073558 ATTTTTTGTTTTAAT
1 A-TATTTGTTTTAAT
8073573 CAAGGCAAGA
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
28 16 0.26
29 26 0.42
30 8 0.13
31 12 0.19
ACGTcount: A:0.40, C:0.04, G:0.11, T:0.45
Consensus pattern (28 bp):
ATATTTGTTTTAATTTAAATAGGAAAAT
Found at i:8091100 original size:25 final size:25
Alignment explanation
Indices: 8091063--8091126 Score: 92
Period size: 25 Copynumber: 2.6 Consensus size: 25
8091053 AAGAAAATAA
*
8091063 AATCCATACAATTATGATGATTCCC
1 AATCCATATAATTATGATGATTCCC
* *
8091088 AATCCTTATAATTATGGTGATTCCC
1 AATCCATATAATTATGATGATTCCC
*
8091113 AATCCCTATAATTA
1 AATCCATATAATTA
8091127 CGTTTATTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (25 bp):
AATCCATATAATTATGATGATTCCC
Found at i:8095733 original size:25 final size:25
Alignment explanation
Indices: 8095696--8095759 Score: 101
Period size: 25 Copynumber: 2.6 Consensus size: 25
8095686 AAGAAAATAA
* *
8095696 AATCCTTACAATTATGATGATTCCC
1 AATCCCTATAATTATGATGATTCCC
*
8095721 AATCCCTATAATTATGGTGATTCCC
1 AATCCCTATAATTATGATGATTCCC
8095746 AATCCCTATAATTA
1 AATCCCTATAATTA
8095760 CATTTATTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.36
Consensus pattern (25 bp):
AATCCCTATAATTATGATGATTCCC
Found at i:8097384 original size:54 final size:54
Alignment explanation
Indices: 8097243--8097385 Score: 214
Period size: 54 Copynumber: 2.6 Consensus size: 54
8097233 TCTTATGCTA
* * *
8097243 GGTGTGTGCAAATACTAAGAGCAGCTTATAATTATGTTCATCGATCCTATGTTC
1 GGTGTGTGCAAATACTAAGAGTAGGTTATAATTATGTTCATCAATCCTATGTTC
* *
8097297 GGTGTGTGCAAATACTAAGAATAGGTTATAATTATGTTTATCAATCCTATGTTC
1 GGTGTGTGCAAATACTAAGAGTAGGTTATAATTATGTTCATCAATCCTATGTTC
* * *
8097351 GGTGTGTGCAAATATTAAGAGTAGGATAGAATTAT
1 GGTGTGTGCAAATACTAAGAGTAGGTTATAATTAT
8097386 TTTCTATACT
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 80 1.00
ACGTcount: A:0.31, C:0.11, G:0.22, T:0.36
Consensus pattern (54 bp):
GGTGTGTGCAAATACTAAGAGTAGGTTATAATTATGTTCATCAATCCTATGTTC
Found at i:8104978 original size:16 final size:16
Alignment explanation
Indices: 8104939--8104981 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
8104929 ATATTTTCAT
8104939 TTAATAATTTT-AAACA
1 TTAAT-ATTTTAAAACA
* *
8104955 TTAGTATTTTAAAATA
1 TTAATATTTTAAAACA
8104971 TTAATATTTTA
1 TTAATATTTTA
8104982 TTTATAATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 5 0.22
16 18 0.78
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (16 bp):
TTAATATTTTAAAACA
Found at i:8104989 original size:43 final size:42
Alignment explanation
Indices: 8104917--8105014 Score: 119
Period size: 43 Copynumber: 2.3 Consensus size: 42
8104907 TGCATTTTTC
*
8104917 ATTTTTAAATTTATATTTTCATTTAATAATTTTAAACATTAGT
1 ATTTTAAAATTTATATTTTCATTTAATAA-TTTAAACATTAGT
*
8104960 ATTTTAAAATATTAATATTTT-ATTT-ATAATTTAAACATTATT
1 ATTTTAAAAT-TT-ATATTTTCATTTAATAATTTAAACATTAGT
*
8105002 ATGATTAAAATTT
1 AT-TTTAAAATTT
8105015 TATAATATTA
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
42 16 0.33
43 20 0.41
44 6 0.12
45 7 0.14
ACGTcount: A:0.41, C:0.03, G:0.02, T:0.54
Consensus pattern (42 bp):
ATTTTAAAATTTATATTTTCATTTAATAATTTAAACATTAGT
Found at i:8105373 original size:16 final size:17
Alignment explanation
Indices: 8105352--8105383 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8105342 TTTAAAAAAT
8105352 AATTAA-AAAATATAAA
1 AATTAAGAAAATATAAA
8105368 AATTAAGAAAATATAA
1 AATTAAGAAAATATAA
8105384 GAAAAGAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (17 bp):
AATTAAGAAAATATAAA
Found at i:8106098 original size:18 final size:17
Alignment explanation
Indices: 8106073--8106107 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8106063 TTTTTTAATA
*
8106073 ATTTTTTATTTTTATTT
1 ATTTTTTATTTTGATTT
8106090 ATTTATTTATTTTGATTT
1 ATTT-TTTATTTTGATTT
8106108 TTCAAAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (17 bp):
ATTTTTTATTTTGATTT
Found at i:8109440 original size:17 final size:17
Alignment explanation
Indices: 8109406--8109439 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
8109396 GTTTTCAACC
*
8109406 ATTAATATGAACATAAA
1 ATTAATATGAACAAAAA
8109423 ATTAATAT-AACAAAAA
1 ATTAATATGAACAAAAA
8109439 A
1 A
8109440 AGTATTTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (17 bp):
ATTAATATGAACAAAAA
Found at i:8119865 original size:21 final size:21
Alignment explanation
Indices: 8119841--8119886 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
8119831 AATCCAAATC
8119841 AAAGAAAATAAGA-AAAACACA
1 AAAGAAAA-AAGAGAAAACACA
* *
8119862 AAAGTAAAGAGAGAAAACACA
1 AAAGAAAAAAGAGAAAACACA
8119883 AAAG
1 AAAG
8119887 TCAATTTATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 3 0.14
21 19 0.86
ACGTcount: A:0.72, C:0.09, G:0.15, T:0.04
Consensus pattern (21 bp):
AAAGAAAAAAGAGAAAACACA
Found at i:8125696 original size:21 final size:22
Alignment explanation
Indices: 8125667--8125707 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
8125657 ATTGTATCCA
*
8125667 TCTTTGCCATGTA-TGCATTGT
1 TCTTGGCCATGTATTGCATTGT
8125688 TCTTGGCCATGTATTGCATT
1 TCTTGGCCATGTATTGCATT
8125708 AACATCTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.15, C:0.20, G:0.20, T:0.46
Consensus pattern (22 bp):
TCTTGGCCATGTATTGCATTGT
Found at i:8138368 original size:58 final size:57
Alignment explanation
Indices: 8138276--8138395 Score: 186
Period size: 58 Copynumber: 2.1 Consensus size: 57
8138266 GAGGTCTCAT
* * *
8138276 CTTTGCATGCATAGCATTTATTAAATTGCCTAAAATAAATCTATCACACGCATACTG
1 CTTTGCATGCATAGCATTTATTAAATTGCATAAAATAAATCTATCACACGCAAACTA
* *
8138333 CTTTGCATTGCATAGCATTTATTAAATTGTATAAAATAAATCTATCACATGCAAACTA
1 CTTTGCA-TGCATAGCATTTATTAAATTGCATAAAATAAATCTATCACACGCAAACTA
8138391 CTTTG
1 CTTTG
8138396 GATGATTATG
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
57 7 0.12
58 50 0.88
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (57 bp):
CTTTGCATGCATAGCATTTATTAAATTGCATAAAATAAATCTATCACACGCAAACTA
Found at i:8147408 original size:34 final size:34
Alignment explanation
Indices: 8147360--8147463 Score: 181
Period size: 34 Copynumber: 3.1 Consensus size: 34
8147350 TGTATGACCT
**
8147360 AGGTGTATAAGTGCTTATGATTCTCATTCATTAA
1 AGGTGTATGTGTGCTTATGATTCTCATTCATTAA
8147394 AGGTGTATGTGTGCTTATGATTCTCATTCATTAA
1 AGGTGTATGTGTGCTTATGATTCTCATTCATTAA
*
8147428 AGGTGTATGTGTGCTTATGATTCTCATTCGTTAA
1 AGGTGTATGTGTGCTTATGATTCTCATTCATTAA
8147462 AG
1 AG
8147464 TCTGATTTAA
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 67 1.00
ACGTcount: A:0.25, C:0.12, G:0.21, T:0.42
Consensus pattern (34 bp):
AGGTGTATGTGTGCTTATGATTCTCATTCATTAA
Found at i:8148925 original size:35 final size:35
Alignment explanation
Indices: 8148881--8148999 Score: 145
Period size: 35 Copynumber: 3.5 Consensus size: 35
8148871 TTGATCTCAA
*
8148881 AAAAACCATTGTTAAAGGTTGTAGTTGAGCCTATG
1 AAAAACCATTGTTAAAGGTTGTGGTTGAGCCTATG
* * *
8148916 AAAAGCCATT-TT--AGGTTTTGGTTGATCCTATG
1 AAAAACCATTGTTAAAGGTTGTGGTTGAGCCTATG
* *
8148948 AAAAACCATTGTTAAAAGTTGTGGCTGAGCCTATG
1 AAAAACCATTGTTAAAGGTTGTGGTTGAGCCTATG
* *
8148983 AAAAGCCATTGTAAAAG
1 AAAAACCATTGTTAAAG
8149000 CTTAGTGGAA
Statistics
Matches: 69, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
32 26 0.38
33 2 0.03
34 2 0.03
35 39 0.57
ACGTcount: A:0.34, C:0.13, G:0.22, T:0.31
Consensus pattern (35 bp):
AAAAACCATTGTTAAAGGTTGTGGTTGAGCCTATG
Found at i:8148952 original size:67 final size:66
Alignment explanation
Indices: 8148865--8148992 Score: 195
Period size: 67 Copynumber: 1.9 Consensus size: 66
8148855 TAGTTTTGGA
* *
8148865 TTTTGGTTGATCTCAAAAAAACCATTGTTAAAGGTTGTAGTTGAGCCTATGAAAAGCCATTTTAG
1 TTTTGGTTGATCTCAAAAAAACCATTGTTAAAAGTTGTAGCTGAGCCTATGAAAAGCCATTTTAG
8148930 G
66 G
* *
8148931 TTTTGGTTGATC-CTATGAAAAACCATTGTTAAAAGTTGTGGCTGAGCCTATGAAAAGCCATT
1 TTTTGGTTGATCTC-A-AAAAAACCATTGTTAAAAGTTGTAGCTGAGCCTATGAAAAGCCATT
8148993 GTAAAAGCTT
Statistics
Matches: 56, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
65 1 0.02
66 13 0.23
67 42 0.75
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.34
Consensus pattern (66 bp):
TTTTGGTTGATCTCAAAAAAACCATTGTTAAAAGTTGTAGCTGAGCCTATGAAAAGCCATTTTAG
G
Found at i:8151589 original size:24 final size:23
Alignment explanation
Indices: 8151537--8151589 Score: 54
Period size: 24 Copynumber: 2.2 Consensus size: 23
8151527 GAATTATGAT
**
8151537 GTAAATGCTAATGACTATGTGTT
1 GTAAATGCTAATGACTATGTGGA
8151560 GTTAAATGCTAGATGACTACTG-GGA
1 G-TAAATGCTA-ATGACTA-TGTGGA
8151585 GTAAA
1 GTAAA
8151590 AGTTCTGCCC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 1 0.04
24 13 0.52
25 9 0.36
26 2 0.08
ACGTcount: A:0.34, C:0.09, G:0.25, T:0.32
Consensus pattern (23 bp):
GTAAATGCTAATGACTATGTGGA
Found at i:8157891 original size:20 final size:21
Alignment explanation
Indices: 8157855--8157896 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
8157845 TAATTTTTAA
8157855 AAAATAACATAAAATTAAACT
1 AAAATAACATAAAATTAAACT
*
8157876 AAAATAAC-TTAAATTAAACT
1 AAAATAACATAAAATTAAACT
8157896 A
1 A
8157897 CTCAACATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.64, C:0.10, G:0.00, T:0.26
Consensus pattern (21 bp):
AAAATAACATAAAATTAAACT
Found at i:8160143 original size:66 final size:66
Alignment explanation
Indices: 8160061--8160193 Score: 221
Period size: 66 Copynumber: 2.0 Consensus size: 66
8160051 TTAGCAATGT
*
8160061 TGGCATAAGCACGAGTTGAGATACGCTTGGCTATGTATGGGAACCTAACTTAATTGGGTCACTAT
1 TGGCATAAGCACGAGTTGAGATACGCTTGGCTATGTATGGCAACCTAACTTAATTGGGTCACTAT
8160126 A
66 A
* * * *
8160127 TGGCATAAGCATGAGTTGAGATATGCTTGGCTATGTATGGCAACTTAACTTAATTGGGTCATTAT
1 TGGCATAAGCACGAGTTGAGATACGCTTGGCTATGTATGGCAACCTAACTTAATTGGGTCACTAT
8160192 A
66 A
8160193 T
1 T
8160194 ATTTATAGTA
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (66 bp):
TGGCATAAGCACGAGTTGAGATACGCTTGGCTATGTATGGCAACCTAACTTAATTGGGTCACTAT
A
Found at i:8161368 original size:21 final size:21
Alignment explanation
Indices: 8161344--8161389 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
8161334 TTAAAGTAAT
8161344 TTAAAAC-AAAATAACTTAAAA
1 TTAAAACTAAAATAACTT-AAA
8161365 TT-AAACTAAAATAACTTAAA
1 TTAAAACTAAAATAACTTAAA
8161385 TTAAA
1 TTAAA
8161390 CTACTCAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.63, C:0.09, G:0.00, T:0.28
Consensus pattern (21 bp):
TTAAAACTAAAATAACTTAAA
Found at i:8161385 original size:20 final size:21
Alignment explanation
Indices: 8161347--8161392 Score: 78
Period size: 20 Copynumber: 2.3 Consensus size: 21
8161337 AAGTAATTTA
8161347 AAAC-AAAATAACTTAAAATT
1 AAACTAAAATAACTTAAAATT
8161367 AAACTAAAATAACTT-AAATT
1 AAACTAAAATAACTTAAAATT
8161387 AAACTA
1 AAACTA
8161393 CTCAATATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.63, C:0.11, G:0.00, T:0.26
Consensus pattern (21 bp):
AAACTAAAATAACTTAAAATT
Found at i:8164068 original size:34 final size:34
Alignment explanation
Indices: 8164022--8164092 Score: 97
Period size: 34 Copynumber: 2.1 Consensus size: 34
8164012 AAGTCTCTAC
*
8164022 TATGGGGCATATCATCATCCTTACAATCTCCCAA
1 TATGGGGCATATCATCATCCCTACAATCTCCCAA
* * * *
8164056 TATGGGGGATATCGTCATCCCTACAGTCTCCTAA
1 TATGGGGCATATCATCATCCCTACAATCTCCCAA
8164090 TAT
1 TAT
8164093 CATCGCACAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (34 bp):
TATGGGGCATATCATCATCCCTACAATCTCCCAA
Found at i:8166102 original size:70 final size:69
Alignment explanation
Indices: 8165855--8166103 Score: 234
Period size: 69 Copynumber: 3.6 Consensus size: 69
8165845 GTAGTCAGGT
* * * * * ** *
8165855 ATCGACTACAAAGGGTCTATAGTCAATCTTGGACTAGAATGTTTGTTTCATTCGATTCCGCTTCA
1 ATCGACTATAGAGGGTCTATAGTCAATCTTGGACCAGAATGTTTGTTTTATTCAATTTTGCTTCC
8165920 TAAG
66 TAAG
* * * *
8165924 ATCGACTAT-GAAGAGTCTACAGTCAATCTTGGACCATAATGTTTGTTGTTATTTAATTTTGCTT
1 ATCGACTATAG-AGGGTCTATAGTCAATCTTGGACCAGAATGTTTGTT-TTATTCAATTTTGCTT
8165988 CAC-AAG
64 C-CTAAG
** * * * * *
8165994 A-CGACTATAGAGGGTCTATAGTTGATCCTAGACTAGAATGTTTGTATTTATTCCATTTTTCTTC
1 ATCGACTATAGAGGGTCTATAGTCAATCTTGGACCAGAATGTTTGT-TTTATTCAATTTTGCTTC
*
8166058 CTAAC
65 CTAAG
* * *
8166063 ATCGACTATAGAGGGCCTATAGTCGATTTTGGACCAGAATG
1 ATCGACTATAGAGGGTCTATAGTCAATCTTGGACCAGAATG
8166104 CATGAGTTTT
Statistics
Matches: 143, Mismatches: 30, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
68 1 0.01
69 91 0.64
70 51 0.36
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (69 bp):
ATCGACTATAGAGGGTCTATAGTCAATCTTGGACCAGAATGTTTGTTTTATTCAATTTTGCTTCC
TAAG
Found at i:8172962 original size:13 final size:13
Alignment explanation
Indices: 8172944--8172970 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8172934 ATGTCATACT
8172944 TAAAGTGGGGAAA
1 TAAAGTGGGGAAA
8172957 TAAAGTGGGGAAA
1 TAAAGTGGGGAAA
8172970 T
1 T
8172971 TATGCATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.37, T:0.19
Consensus pattern (13 bp):
TAAAGTGGGGAAA
Found at i:8184192 original size:32 final size:33
Alignment explanation
Indices: 8184147--8184276 Score: 108
Period size: 32 Copynumber: 4.0 Consensus size: 33
8184137 AACATCTCTA
**
8184147 AATATAGGGTATATCATTTTCCCTA-AGTCTCC
1 AATATAGGGTATATCATCATCCCTATAGTCTCC
8184179 AATAT-GGGCTATATCATCATCCCTATAGTCTCCC
1 AATATAGGG-TATATCATCATCCCTATAGTCT-CC
* ** * * *
8184213 AATTTATTGT-CAT-GTCATCCTTATAGTCTCC
1 AATATAGGGTATATCATCATCCCTATAGTCTCC
* *
8184244 AATATGGGGCT-TATCATCATCCCTACAGTCTCC
1 AATATAGGG-TATATCATCATCCCTATAGTCTCC
8184277 TATCATCACA
Statistics
Matches: 76, Mismatches: 16, Indels: 11
0.74 0.16 0.11
Matches are distributed among these distances:
31 10 0.13
32 36 0.47
33 22 0.29
34 7 0.09
35 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.12, T:0.36
Consensus pattern (33 bp):
AATATAGGGTATATCATCATCCCTATAGTCTCC
Found at i:8186188 original size:70 final size:70
Alignment explanation
Indices: 8186055--8186188 Score: 173
Period size: 70 Copynumber: 1.9 Consensus size: 70
8186045 TTGGGCAATC
* *
8186055 CAAGATCGACTATGGAAGGTCTATAGTCAATCTTGGACCAGAATGTTTGTTTTTGTTCGATTTTG
1 CAAGATCGACTATGGAAGGTCTATAGTCAATCTTAGACCAGAATGTTTGATTTTGTTCGATTTTG
8186120 CTTTA
66 CTTTA
* ** * *
8186125 CAAGATTGACTATGG-AGTGTCTATAGTTGATCTTAGACTAGAATGTTTGCATTTT-TTCTATTT
1 CAAGATCGACTATGGAAG-GTCTATAGTCAATCTTAGACCAGAATGTTTG-ATTTTGTTCGATTT
8186188 T
64 T
8186189 TCCTTCTTAA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
69 2 0.04
70 49 0.89
71 4 0.07
ACGTcount: A:0.25, C:0.13, G:0.20, T:0.43
Consensus pattern (70 bp):
CAAGATCGACTATGGAAGGTCTATAGTCAATCTTAGACCAGAATGTTTGATTTTGTTCGATTTTG
CTTTA
Found at i:8198749 original size:19 final size:17
Alignment explanation
Indices: 8198727--8198761 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 17
8198717 CATAAAATAA
8198727 AAATAACTTAATAAAAATT
1 AAATAA-TT-ATAAAAATT
8198746 AAATAATTATAAAAAT
1 AAATAATTATAAAAAT
8198762 AACTAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 2 0.12
19 6 0.38
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (17 bp):
AAATAATTATAAAAATT
Found at i:8198930 original size:13 final size:14
Alignment explanation
Indices: 8198898--8198933 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
8198888 TGAGCAAAAG
*
8198898 AAAATAAAACAATG
1 AAAATAAAACAATA
8198912 AAAATAAAAC-ATA
1 AAAATAAAACAATA
8198925 AAAATAAAA
1 AAAATAAAA
8198934 TTTTACAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 11 0.52
14 10 0.48
ACGTcount: A:0.78, C:0.06, G:0.03, T:0.14
Consensus pattern (14 bp):
AAAATAAAACAATA
Found at i:8205563 original size:20 final size:20
Alignment explanation
Indices: 8205513--8205563 Score: 50
Period size: 20 Copynumber: 2.5 Consensus size: 20
8205503 TTTGGTCGCT
* *
8205513 ATCTATTGATAGATGTGTCC
1 ATCTATCGATAGATCTGTCC
*
8205533 ATTTATCGATAGATCTAG-CC
1 ATCTATCGATAGATCT-GTCC
*
8205553 ATCTATGGATA
1 ATCTATCGATA
8205564 AATTTGGCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
20 24 0.96
21 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (20 bp):
ATCTATCGATAGATCTGTCC
Found at i:8209417 original size:8 final size:8
Alignment explanation
Indices: 8209404--8209429 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
8209394 AGTTTTCTTT
8209404 TTAAAATA
1 TTAAAATA
8209412 TTAAAATA
1 TTAAAATA
8209420 TTAAAATA
1 TTAAAATA
8209428 TT
1 TT
8209430 TTTAAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (8 bp):
TTAAAATA
Found at i:8211722 original size:20 final size:19
Alignment explanation
Indices: 8211686--8211724 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
8211676 AATTAAAATT
*
8211686 ATAATATAAATTATAAAAA
1 ATAATATAAAATATAAAAA
*
8211705 ATAATATTAAAATCTAAAAA
1 ATAATA-TAAAATATAAAAA
8211725 TTAAATTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (19 bp):
ATAATATAAAATATAAAAA
Found at i:8215540 original size:24 final size:24
Alignment explanation
Indices: 8215505--8215566 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 24
8215495 TTCTTTTTTA
*
8215505 TTATTT-TGTATTATTTTTTCCTTAT
1 TTATTTAT-TATTATTATTT-CTTAT
*
8215530 TTA-TTATTATTATTATTTCTTTT
1 TTATTTATTATTATTATTTCTTAT
*
8215553 TTATTTTTTATTAT
1 TTATTTATTATTAT
8215567 CCTTTTTAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
23 7 0.22
24 21 0.66
25 4 0.12
ACGTcount: A:0.19, C:0.05, G:0.02, T:0.74
Consensus pattern (24 bp):
TTATTTATTATTATTATTTCTTAT
Found at i:8215543 original size:27 final size:27
Alignment explanation
Indices: 8215493--8215566 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
8215483 CTCCCTTTTC
* *
8215493 TTTTCTTTTTTATTATTTTGTATTATT
1 TTTTCTTATTTATTATTATGTATTATT
8215520 TTTTCCTTATTTATTATTAT-TATTATT
1 TTTT-CTTATTTATTATTATGTATTATT
* *
8215547 TCTTTTTTATTTTTTATTAT
1 T-TTTCTTATTTATTATTAT
8215567 CCTTTTTAGA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
27 25 0.61
28 16 0.39
ACGTcount: A:0.18, C:0.05, G:0.01, T:0.76
Consensus pattern (27 bp):
TTTTCTTATTTATTATTATGTATTATT
Found at i:8222935 original size:90 final size:90
Alignment explanation
Indices: 8222762--8222936 Score: 192
Period size: 90 Copynumber: 1.9 Consensus size: 90
8222752 GATATCAAGT
* * * *
8222762 CACTTACTTGATTTGTTACAAACATAAATTAAAAACTAACCATTAAAATCCTTTTAAAGTTTGGA
1 CACTTACATGATTTGCTACAAACATAAATTAAAAACTAACCATTAAAATCCTTTTAAAGCTTGAA
* *
8222827 GATGATAAAAACAAAATAATAGCAA
66 AATAATAAAAACAAAATAATAGCAA
* * * * *
8222852 CACTTACATGATTTGCTA-AAATTATAAA-TCAAAACTGAATCATTGAAATCCTTTTGAAGCTTG
1 CACTTACATGATTTGCTACAAA-CATAAATTAAAAACT-AACCATTAAAATCCTTTTAAAGCTTG
* * *
8222915 AAAATAATGAAAATATAATAAT
64 AAAATAATAAAAACAAAATAAT
8222937 TCTAAAACTT
Statistics
Matches: 69, Mismatches: 14, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
89 10 0.14
90 59 0.86
ACGTcount: A:0.47, C:0.13, G:0.09, T:0.31
Consensus pattern (90 bp):
CACTTACATGATTTGCTACAAACATAAATTAAAAACTAACCATTAAAATCCTTTTAAAGCTTGAA
AATAATAAAAACAAAATAATAGCAA
Found at i:8227581 original size:16 final size:18
Alignment explanation
Indices: 8227560--8227592 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8227550 AGTTTTAAAT
8227560 TTGTTT-TG-ATTTTCTA
1 TTGTTTATGAATTTTCTA
8227576 TTGTTTATGAATTTTCT
1 TTGTTTATGAATTTTCT
8227593 GTTAACTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 2 0.13
18 7 0.47
ACGTcount: A:0.15, C:0.06, G:0.12, T:0.67
Consensus pattern (18 bp):
TTGTTTATGAATTTTCTA
Found at i:8255007 original size:29 final size:29
Alignment explanation
Indices: 8254972--8255303 Score: 203
Period size: 29 Copynumber: 11.2 Consensus size: 29
8254962 TTTTACATGC
*
8254972 TTGTCTTAATTTAGAGAAGAAAACATGTT
1 TTGTCTTAATTTAGACAAGAAAACATGTT
*
8255001 TTGTCTTAACTTT-GACAAGAAGACATGTT
1 TTGTCTTAA-TTTAGACAAGAAAACATGTT
* *
8255030 TTGTCTTAATCTAGACAAGAAAGCATG-T
1 TTGTCTTAATTTAGACAAGAAAACATGTT
* * *
8255058 TTGTTTTAAGTTAGACAAGAAAACAAGTT
1 TTGTCTTAATTTAGACAAGAAAACATGTT
*** * * * **
8255087 TAAAC--AAGTTTTGGCTTAATTTAGGCAAGAAAACATGT
1 TTGTCTTAA-TTTAGAC---A---A-G-AA-AACATGT-T
* *
8255125 TTATCTTAATTTAGACATGAAAACATGTT
1 TTGTCTTAATTTAGACAAGAAAACATGTT
*
8255154 TTGGCTTAATTTAGACAAGAAAACATGTT
1 TTGTCTTAATTTAGACAAGAAAACATGTT
* *
8255183 TTCTCTTAATTGAGACAAGAAAACATG--
1 TTGTCTTAATTTAGACAAGAAAACATGTT
*
8255210 -TGTCTTAATTTAAGACAAGAAAAATATGTT
1 TTGTCTTAATTT-AGACAAG-AAAACATGTT
** * * *
8255240 TTACCTTAATCTGGACAAGAAAAAATG-T
1 TTGTCTTAATTTAGACAAGAAAACATGTT
* * * * *
8255268 TTGACTCAATTTAAACAAGATAACATATT
1 TTGTCTTAATTTAGACAAGAAAACATGTT
8255297 TTGTCTT
1 TTGTCTT
8255304 GATTAAAGGC
Statistics
Matches: 228, Mismatches: 53, Indels: 44
0.70 0.16 0.14
Matches are distributed among these distances:
26 9 0.04
27 9 0.04
28 55 0.24
29 110 0.48
30 13 0.06
31 11 0.05
32 1 0.00
34 1 0.00
35 1 0.00
36 3 0.01
37 4 0.02
38 4 0.02
39 5 0.02
40 2 0.01
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (29 bp):
TTGTCTTAATTTAGACAAGAAAACATGTT
Found at i:8255078 original size:57 final size:56
Alignment explanation
Indices: 8254972--8255308 Score: 252
Period size: 57 Copynumber: 5.7 Consensus size: 56
8254962 TTTTACATGC
* * *
8254972 TTGTCTTAATTTAGAGAAGAAAACATGTTTTGTCTTAACTTTGACAAGAAGACATGTT
1 TTGTCTTAATTTAGACAAGAAAACATG-TTTGTCTTAA-TTAGACAAGAAAACATGTT
* * *
8255030 TTGTCTTAATCTAGACAAGAAAGCATGTTTGTTTTAAGTTAGACAAGAAAACAAGTTTAAACAAG
1 TTGTCTTAATTTAGACAAGAAAACATGTTTGTCTTAA-TTAGACAAGAAAAC-A---T------G
8255095 TT
55 TT
* * * *
8255097 TTGGCTTAATTTAGGCAAGAAAACATGTTTATCTTAATTTAGACATGAAAACATGTT
1 TTGTCTTAATTTAGACAAGAAAACATGTTTGTCTTAA-TTAGACAAGAAAACATGTT
* *
8255154 TTGGCTTAATTTAGACAAGAAAACATGTTTTCTCTTAATTGAGACAAGAAAACATG--
1 TTGTCTTAATTTAGACAAGAAAACATG-TTTGTCTTAATT-AGACAAGAAAACATGTT
* * *
8255210 -TGTCTTAATTTAAGACAAGAAAAATATGTTT-TACCTTAATCTGGACAAGAAAAAATG-T
1 TTGTCTTAATTT-AGACAAG-AAAACATGTTTGT--CTTAAT-TAGACAAGAAAACATGTT
* * * * * *
8255268 TTGACTCAATTTAAACAAGATAACATATTTTGTCTTGATTA
1 TTGTCTTAATTTAGACAAGAAAACAT-GTTTGTCTTAATTA
8255309 AAGGCATGAA
Statistics
Matches: 228, Mismatches: 30, Indels: 44
0.75 0.10 0.15
Matches are distributed among these distances:
55 11 0.05
56 11 0.05
57 88 0.39
58 58 0.25
59 10 0.04
61 1 0.00
63 1 0.00
66 1 0.00
67 47 0.21
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (56 bp):
TTGTCTTAATTTAGACAAGAAAACATGTTTGTCTTAATTAGACAAGAAAACATGTT
Found at i:8255106 original size:67 final size:67
Alignment explanation
Indices: 8255027--8255207 Score: 177
Period size: 67 Copynumber: 2.8 Consensus size: 67
8255017 AAGAAGACAT
* * * *
8255027 GTTTTGTCTTAATCTAGACAAGAAAGCATGTTTGTTTTAAGTTAGACAAGAAAACAAGTTTAAAC
1 GTTTTGGCTTAATCTAGACAAGAAAACATGTTTATCTTAAGTTAGACAAGAAAACAAGTTTAAAC
8255092 AA
66 AA
* * * *
8255094 GTTTTGGCTTAATTTAGGCAAGAAAACATGTTTATCTTAATTTAGACATGAAAAC-A---T----
1 GTTTTGGCTTAATCTAGACAAGAAAACATGTTTATCTTAAGTTAGACAAGAAAACAAGTTTAAAC
8255151 --
66 AA
* *
8255151 GTTTTGGCTTAATTTAGACAAGAAAACATGTTTTCTCTTAA-TTGAGACAAGAAAACA
1 GTTTTGGCTTAATCTAGACAAGAAAACATG-TTTATCTTAAGTT-AGACAAGAAAACA
8255208 TGTGTCTTAA
Statistics
Matches: 100, Mismatches: 11, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
57 31 0.31
58 20 0.20
63 1 0.01
66 1 0.01
67 47 0.47
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (67 bp):
GTTTTGGCTTAATCTAGACAAGAAAACATGTTTATCTTAAGTTAGACAAGAAAACAAGTTTAAAC
AA
Found at i:8255168 original size:96 final size:96
Alignment explanation
Indices: 8254992--8255183 Score: 244
Period size: 96 Copynumber: 2.0 Consensus size: 96
8254982 TTAGAGAAGA
* * * * *
8254992 AAACATGTTTTGTCTTAACTTTGACAAGAAGACATGTTTTGTCTTAATCTAGACAAGAAAGCATG
1 AAACAAGTTTTGGCTTAACTTTGACAAGAAAACATGTTTTATCTTAATCTAGACAAGAAAACATG
**
8255057 TTTGTTTTAAGTTAGACAAGAAAACAAGTTT
66 TTTGGCTTAAGTTAGACAAGAAAACAAGTTT
* * *
8255088 AAACAAGTTTTGGCTTAA-TTTAGGCAAGAAAACATG-TTTATCTTAATTTAGACATGAAAACAT
1 AAACAAGTTTTGGCTTAACTTT-GACAAGAAAACATGTTTTATCTTAATCTAGACAAGAAAACAT
* *
8255151 GTTTTGGCTTAATTTAGACAAGAAAACATGTTT
65 G-TTTGGCTTAAGTTAGACAAGAAAACAAGTTT
8255184 TCTCTTAATT
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
95 27 0.33
96 55 0.67
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (96 bp):
AAACAAGTTTTGGCTTAACTTTGACAAGAAAACATGTTTTATCTTAATCTAGACAAGAAAACATG
TTTGGCTTAAGTTAGACAAGAAAACAAGTTT
Found at i:8255239 original size:86 final size:85
Alignment explanation
Indices: 8255101--8255269 Score: 214
Period size: 86 Copynumber: 2.0 Consensus size: 85
8255091 CAAGTTTTGG
* * * ** *
8255101 CTTAATTTAGGCAAGAAAACATGTTTATCTTAATTTAGACATGAAAACATGTTTTGGCTTAATTT
1 CTTAATTGAGACAAGAAAACATG-TTATCTTAATTTAGACAAGAAAACATGTTTTACCTTAATCT
*
8255166 AGACAAGAAAACATGTTTTCT
65 AGACAAGAAAAAATGTTTTCT
* *
8255187 CTTAATTGAGACAAGAAAACATG-TGTCTTAATTTAAGACAAGAAAAATATGTTTTACCTTAATC
1 CTTAATTGAGACAAGAAAACATGTTATCTTAATTT-AGACAAG-AAAACATGTTTTACCTTAATC
*
8255251 TGGACAAGAAAAAATGTTT
64 TAGACAAGAAAAAATGTTT
8255270 GACTCAATTT
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
84 10 0.14
85 6 0.08
86 55 0.77
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.34
Consensus pattern (85 bp):
CTTAATTGAGACAAGAAAACATGTTATCTTAATTTAGACAAGAAAACATGTTTTACCTTAATCTA
GACAAGAAAAAATGTTTTCT
Found at i:8260242 original size:57 final size:58
Alignment explanation
Indices: 8260174--8260447 Score: 290
Period size: 57 Copynumber: 4.8 Consensus size: 58
8260164 GGTAACTTTT
* *
8260174 ACATG-TTTGTCTTAATTTAGACAACAAAACATG-TTTGTCTTAATTTTCACAAGAAA
1 ACATGTTTTGTCTTAATTTAGACAAGAAAACATGTTTTGTCTTAATTTACACAAGAAA
* * * * * * **
8260230 ATATGTTTTGTCTTAATCTAGATAAGAAAACATGTTTTGTCTTAGTTAATAGTAGAAA
1 ACATGTTTTGTCTTAATTTAGACAAGAAAACATGTTTTGTCTTAATTTACACAAGAAA
* * * * *
8260288 ACAT-ATTTGTCTTAATTT-GATAAGAAAACTTGTTTTGTCTTAATTTACATAGGAAA
1 ACATGTTTTGTCTTAATTTAGACAAGAAAACATGTTTTGTCTTAATTTACACAAGAAA
* * * * * *
8260344 ATATGTTTTGACTTAATTTAGACAAGAAAAATATGTTTTGTTTTACTTTAAACAA-AAA
1 ACATGTTTTGTCTTAATTTAGACAAG-AAAACATGTTTTGTCTTAATTTACACAAGAAA
* *
8260402 ACATG-TTTGTCTTAATTTAGACAATAAAACATATTTTGTCTTAATT
1 ACATGTTTTGTCTTAATTTAGACAAGAAAACATGTTTTGTCTTAATT
8260448 AATAACAAAA
Statistics
Matches: 175, Mismatches: 38, Indels: 10
0.78 0.17 0.04
Matches are distributed among these distances:
56 55 0.31
57 67 0.38
58 32 0.18
59 21 0.12
ACGTcount: A:0.37, C:0.09, G:0.12, T:0.42
Consensus pattern (58 bp):
ACATGTTTTGTCTTAATTTAGACAAGAAAACATGTTTTGTCTTAATTTACACAAGAAA
Found at i:8260256 original size:29 final size:29
Alignment explanation
Indices: 8260174--8260447 Score: 272
Period size: 29 Copynumber: 9.6 Consensus size: 29
8260164 GGTAACTTTT
*
8260174 ACATG-TTTGTCTTAATTTAGACAACAAA
1 ACATGTTTTGTCTTAATTTAGACAAGAAA
**
8260202 ACATG-TTTGTCTTAATTTTCACAAGAAA
1 ACATGTTTTGTCTTAATTTAGACAAGAAA
* * *
8260230 ATATGTTTTGTCTTAATCTAGATAAGAAA
1 ACATGTTTTGTCTTAATTTAGACAAGAAA
* * * **
8260259 ACATGTTTTGTCTTAGTTAATAGTAGAAA
1 ACATGTTTTGTCTTAATTTAGACAAGAAA
* *
8260288 ACAT-ATTTGTCTTAATTT-GATAAGAAA
1 ACATGTTTTGTCTTAATTTAGACAAGAAA
* * * *
8260315 ACTTGTTTTGTCTTAATTTACATAGGAAA
1 ACATGTTTTGTCTTAATTTAGACAAGAAA
* *
8260344 ATATGTTTTGACTTAATTTAGACAAGAAAA
1 ACATGTTTTGTCTTAATTTAGACAAG-AAA
* * * *
8260374 ATATGTTTTGTTTTACTTTAAACAA-AAA
1 ACATGTTTTGTCTTAATTTAGACAAGAAA
*
8260402 ACATG-TTTGTCTTAATTTAGACAATAAA
1 ACATGTTTTGTCTTAATTTAGACAAGAAA
*
8260430 ACATATTTTGTCTTAATT
1 ACATGTTTTGTCTTAATT
8260448 AATAACAAAA
Statistics
Matches: 200, Mismatches: 40, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
27 25 0.12
28 67 0.34
29 84 0.42
30 24 0.12
ACGTcount: A:0.37, C:0.09, G:0.12, T:0.42
Consensus pattern (29 bp):
ACATGTTTTGTCTTAATTTAGACAAGAAA
Found at i:8260331 original size:85 final size:86
Alignment explanation
Indices: 8260199--8260358 Score: 225
Period size: 85 Copynumber: 1.9 Consensus size: 86
8260189 TTTAGACAAC
* *
8260199 AAAACATGTTTGTCTTAATTTTCACAAGAAAATATGTTTTGTCTTAATCTAGATAAGAAAACATG
1 AAAACATATTTGTCTTAATTTTCACAAGAAAATATGTTTTGTCTTAATCTACATAAGAAAACATG
*
8260264 TTTTGTCTTAGTTAATAGTAG
66 TTTTGACTTAGTTAATAGTAG
* * * * *
8260285 AAAACATATTTGTCTTAA-TTTGATAAGAAAACT-TGTTTTGTCTTAATTTACATAGGAAAATAT
1 AAAACATATTTGTCTTAATTTTCACAAGAAAA-TATGTTTTGTCTTAATCTACATAAGAAAACAT
8260348 GTTTTGACTTA
65 GTTTTGACTTA
8260359 ATTTAGACAA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
85 47 0.72
86 18 0.28
ACGTcount: A:0.36, C:0.09, G:0.13, T:0.42
Consensus pattern (86 bp):
AAAACATATTTGTCTTAATTTTCACAAGAAAATATGTTTTGTCTTAATCTACATAAGAAAACATG
TTTTGACTTAGTTAATAGTAG
Found at i:8260403 original size:114 final size:115
Alignment explanation
Indices: 8260174--8260447 Score: 349
Period size: 114 Copynumber: 2.4 Consensus size: 115
8260164 GGTAACTTTT
*
8260174 ACATGTTTGTCTTAATTTAGACAACAAAACATG-TTTGTCTTAATTTTCACAAGAAAATATGTTT
1 ACATGTTTGTCTTAATTTAGACAACAAAACATGTTTTGTCTTAATTTACACAAGAAAATATGTTT
* * * *
8260238 TGTCTTAATCTAGATAAGAAAACATGTTTTGTCTTAGTTAATAGTAGAAA
66 TGACTTAATCTAGACAAGAAAACATGTTTTGTCTTAGTTAATAGCAAAAA
* * * * * *
8260288 ACATATTTGTCTTAATTT-GATAAGAAAACTTGTTTTGTCTTAATTTACATAGGAAAATATGTTT
1 ACATGTTTGTCTTAATTTAGACAACAAAACATGTTTTGTCTTAATTTACACAAGAAAATATGTTT
* * * *
8260352 TGACTTAATTTAGACAAGAAAAATATGTTTTGTTTTACTTTAA-A-CAAAAA
66 TGACTTAATCTAGACAAG-AAAACATGTTTTGTCTTA-GTTAATAGCAAAAA
* *
8260402 ACATGTTTGTCTTAATTTAGACAATAAAACATATTTTGTCTTAATT
1 ACATGTTTGTCTTAATTTAGACAACAAAACATGTTTTGTCTTAATT
8260448 AATAACAAAA
Statistics
Matches: 136, Mismatches: 20, Indels: 7
0.83 0.12 0.04
Matches are distributed among these distances:
113 11 0.08
114 81 0.60
115 40 0.29
116 4 0.03
ACGTcount: A:0.37, C:0.09, G:0.12, T:0.42
Consensus pattern (115 bp):
ACATGTTTGTCTTAATTTAGACAACAAAACATGTTTTGTCTTAATTTACACAAGAAAATATGTTT
TGACTTAATCTAGACAAGAAAACATGTTTTGTCTTAGTTAATAGCAAAAA
Found at i:8265274 original size:62 final size:62
Alignment explanation
Indices: 8265199--8265327 Score: 186
Period size: 62 Copynumber: 2.1 Consensus size: 62
8265189 GCTAGTACAG
* * *
8265199 TTTTGTTTGATTGATGACAAGTATGTTGAAATTCTTGCTGATGATGGCTTAGGTTAGTAGAA
1 TTTTGTTTGATTGATAACAAGTATGTTAAAATTCTTGATGATGATGGCTTAGGTTAGTAGAA
** * * *
8265261 TTTTGTTTGATTGATAATGAGTATGTTAAAATTCTTGATGATTATGGTTTGGGTTAGTAGAA
1 TTTTGTTTGATTGATAACAAGTATGTTAAAATTCTTGATGATGATGGCTTAGGTTAGTAGAA
8265323 TTTTG
1 TTTTG
8265328 CTTGGTGGAT
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.26, C:0.04, G:0.25, T:0.46
Consensus pattern (62 bp):
TTTTGTTTGATTGATAACAAGTATGTTAAAATTCTTGATGATGATGGCTTAGGTTAGTAGAA
Found at i:8267413 original size:22 final size:22
Alignment explanation
Indices: 8267361--8267422 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
8267351 CACAATAGCT
8267361 ATAAACAATAACCACATAGACAAA
1 ATAAA-AA-AACCACATAGACAAA
** * *
8267385 AGGAAAAAACCACATAGTCACA
1 ATAAAAAAACCACATAGACAAA
*
8267407 ATAAAAAAAACACATA
1 ATAAAAAAACCACATA
8267423 ACATAGTCGT
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
22 26 0.84
23 2 0.06
24 3 0.10
ACGTcount: A:0.63, C:0.19, G:0.06, T:0.11
Consensus pattern (22 bp):
ATAAAAAAACCACATAGACAAA
Found at i:8272730 original size:35 final size:35
Alignment explanation
Indices: 8272685--8272831 Score: 118
Period size: 35 Copynumber: 4.2 Consensus size: 35
8272675 CACTTGATTA
* *
8272685 AAATTTTTTAATTAAGTTGTTTGGCTAAATTAATT
1 AAATTATTTAATTAAGTTGTTAGGCTAAATTAATT
* * ** * *
8272720 GAATTGTTTAATTAAGTCATTCGGTCT-AATTGATT
1 AAATTATTTAATTAAGTTGTTAGG-CTAAATTAATT
*
8272755 AAAATTATTTAATTAAGTTGTTACGC-ATAATTAATT
1 -AAATTATTTAATTAAGTTGTTAGGCTA-AATTAATT
* * * * * *
8272791 AAATTATTTAATCAAGTTATTCGGGTTAATTGATT
1 AAATTATTTAATTAAGTTGTTAGGCTAAATTAATT
8272826 AAATTA
1 AAATTA
8272832 AACAACTAAG
Statistics
Matches: 87, Mismatches: 20, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
35 60 0.69
36 27 0.31
ACGTcount: A:0.36, C:0.05, G:0.12, T:0.46
Consensus pattern (35 bp):
AAATTATTTAATTAAGTTGTTAGGCTAAATTAATT
Found at i:8272753 original size:71 final size:71
Alignment explanation
Indices: 8272678--8272828 Score: 207
Period size: 71 Copynumber: 2.1 Consensus size: 71
8272668 TCTCAAGCAC
* ** * * *
8272678 TTGATTAAAATTTTTTAATTAAGTTGTTTGGC-TAAATTAATTGAATTGTTTAATTAAGTCATTC
1 TTGATTAAAATTATTTAATTAAGTTGTTACGCAT-AATTAATTAAATTATTTAATCAAGTCATTC
8272742 -GGTCTAA
65 GGGT-TAA
*
8272749 TTGATTAAAATTATTTAATTAAGTTGTTACGCATAATTAATTAAATTATTTAATCAAGTTATTCG
1 TTGATTAAAATTATTTAATTAAGTTGTTACGCATAATTAATTAAATTATTTAATCAAGTCATTCG
8272814 GGTTAA
66 GGTTAA
8272820 TTGATTAAA
1 TTGATTAAA
8272829 TTAAACAACT
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
71 67 0.94
72 4 0.06
ACGTcount: A:0.36, C:0.05, G:0.13, T:0.46
Consensus pattern (71 bp):
TTGATTAAAATTATTTAATTAAGTTGTTACGCATAATTAATTAAATTATTTAATCAAGTCATTCG
GGTTAA
Found at i:8276334 original size:11 final size:11
Alignment explanation
Indices: 8276306--8276348 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
8276296 AATAGTTTCT
*
8276306 TGCTGCCTCCTT
1 TGCTGCCT-CTC
8276318 TGCTGCCTCTC
1 TGCTGCCTCTC
8276329 TGCTGCCTCTC
1 TGCTGCCTCTC
*
8276340 TTCTGCCTC
1 TGCTGCCTC
8276349 CAAAATCTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
11 21 0.72
12 8 0.28
ACGTcount: A:0.00, C:0.44, G:0.16, T:0.40
Consensus pattern (11 bp):
TGCTGCCTCTC
Found at i:8288098 original size:68 final size:68
Alignment explanation
Indices: 8287991--8288223 Score: 238
Period size: 68 Copynumber: 3.4 Consensus size: 68
8287981 CTCATAAGGC
** * * *
8287991 ATATGGAAA-ATACATCATATACATAATCTCATACCATTCATCATGCTTTCTCAATCACCTCATG
1 ATAT-GAAATATACATCATATACATAATCTCATAGTATTCATCATGCATACTTAATCACCTCATG
8288055 CAGT
65 CAGT
* * * * *
8288059 ATATGAAATATACATCATATACATTATCCCATGGTATTCATCATGCATGCTTAGTCACCTCATAG
1 ATATGAAATATACATCATATACATAATCTCATAGTATTCATCATGCATACTTAATCACCTCAT-G
8288124 C-GT
65 CAGT
* * * * * * * * *
8288127 ATGTGGAATTTACATCATATATACAATCTTATAGTATACATCATGCATACTTAATCATCTCATAC
1 ATATGAAATATACATCATATACATAATCTCATAGTATTCATCATGCATACTTAATCACCTCATGC
8288192 AGT
66 AGT
*
8288195 ATATGAAAT-TAACATCATATACCTAATCT
1 ATATGAAATAT-ACATCATATACATAATCT
8288224 TAAGACATTT
Statistics
Matches: 133, Mismatches: 28, Indels: 8
0.79 0.17 0.05
Matches are distributed among these distances:
67 6 0.05
68 125 0.94
69 2 0.02
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (68 bp):
ATATGAAATATACATCATATACATAATCTCATAGTATTCATCATGCATACTTAATCACCTCATGC
AGT
Found at i:8297976 original size:21 final size:19
Alignment explanation
Indices: 8297952--8297999 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 19
8297942 CTCTGAATGT
8297952 AAATTAAAACAAAATAACATA
1 AAATTAAAA-AAAATAAC-TA
* *
8297973 AAATTTAATAAAAATAACTT
1 AAA-TTAAAAAAAATAACTA
8297993 AAATTAA
1 AAATTAA
8298000 CTACTCAACA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 4 0.17
20 4 0.17
21 11 0.46
22 5 0.21
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (19 bp):
AAATTAAAAAAAATAACTA
Found at i:8305248 original size:36 final size:36
Alignment explanation
Indices: 8305201--8305292 Score: 96
Period size: 35 Copynumber: 2.6 Consensus size: 36
8305191 AGTTAAAGTT
* * *
8305201 ATGCTTGATCTTGTGAAAAGGCCTGTTGTGAAGATA
1 ATGCTTGATCTTGTGAAAAGACATGTTGTAAAGATA
* ** * *
8305237 ATGCTAGATCTT-CAAAAAGACATGTTGTAAAGGTT
1 ATGCTTGATCTTGTGAAAAGACATGTTGTAAAGATA
8305272 ATGCTTGATCTTGATGAAAAG
1 ATGCTTGATCTTG-TGAAAAG
8305293 CAAGTTGATA
Statistics
Matches: 43, Mismatches: 11, Indels: 3
0.75 0.19 0.05
Matches are distributed among these distances:
35 27 0.63
36 11 0.26
37 5 0.12
ACGTcount: A:0.33, C:0.11, G:0.24, T:0.33
Consensus pattern (36 bp):
ATGCTTGATCTTGTGAAAAGACATGTTGTAAAGATA
Found at i:8328976 original size:11 final size:11
Alignment explanation
Indices: 8328962--8328991 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
8328952 AATAATATTT
8328962 TATTAATAAAA
1 TATTAATAAAA
*
8328973 TATTATTAAAA
1 TATTAATAAAA
8328984 TATTAATA
1 TATTAATA
8328992 TTTTATCTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (11 bp):
TATTAATAAAA
Found at i:8335260 original size:25 final size:25
Alignment explanation
Indices: 8335232--8335280 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
8335222 GATATATTCC
* *
8335232 TGGCAAGGGCACGGGCTGATATACG
1 TGGCAAGGCCACGAGCTGATATACG
* *
8335257 TGGCTAGGCCACGAGTTGATATAC
1 TGGCAAGGCCACGAGCTGATATAC
8335281 ATGGTTGCAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.24, C:0.20, G:0.35, T:0.20
Consensus pattern (25 bp):
TGGCAAGGCCACGAGCTGATATACG
Found at i:8340234 original size:35 final size:35
Alignment explanation
Indices: 8340154--8340236 Score: 87
Period size: 35 Copynumber: 2.4 Consensus size: 35
8340144 CCAAGCTTTT
* * *
8340154 ACAATGGCTTTTCACAAGCTCAGCCACAACATTTA
1 ACAATGGTTTTTCACAAGCTCAACCACAACATTCA
* * * *
8340189 AAAATAGTTTTTCA-AAGGCTCAACCATAACCTTCA
1 ACAATGGTTTTTCACAA-GCTCAACCACAACATTCA
8340224 ACAATGGTTTTTC
1 ACAATGGTTTTTC
8340237 CTGGGATCAA
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
34 2 0.05
35 36 0.95
ACGTcount: A:0.35, C:0.24, G:0.11, T:0.30
Consensus pattern (35 bp):
ACAATGGTTTTTCACAAGCTCAACCACAACATTCA
Found at i:8344585 original size:35 final size:35
Alignment explanation
Indices: 8344554--8344620 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
8344544 TCTTTTCACG
* *
8344554 GGCTCAGCCACAACCTTCAACAATGGTTTTTCAAA
1 GGCTCAACCACAACATTCAACAATGGTTTTTCAAA
8344589 GGCTCAACCACAACATTCAACAATGGTTTTTC
1 GGCTCAACCACAACATTCAACAATGGTTTTTC
8344621 CTAGGATCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.27
Consensus pattern (35 bp):
GGCTCAACCACAACATTCAACAATGGTTTTTCAAA
Found at i:8344631 original size:35 final size:35
Alignment explanation
Indices: 8344561--8344633 Score: 110
Period size: 35 Copynumber: 2.1 Consensus size: 35
8344551 ACGGGCTCAG
* *
8344561 CCACAACCTTCAACAATGGTTTTTCAAAGGCTCAA
1 CCACAACATTCAACAATGGTTTTTCAAAGGATCAA
**
8344596 CCACAACATTCAACAATGGTTTTTCCTAGGATCAA
1 CCACAACATTCAACAATGGTTTTTCAAAGGATCAA
8344631 CCA
1 CCA
8344634 AAACCCAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.34, C:0.29, G:0.11, T:0.26
Consensus pattern (35 bp):
CCACAACATTCAACAATGGTTTTTCAAAGGATCAA
Found at i:8349287 original size:7 final size:7
Alignment explanation
Indices: 8349275--8349310 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
8349265 ACTACCACCC
8349275 ACTACCT
1 ACTACCT
*
8349282 ACTACCC
1 ACTACCT
8349289 ACTACCT
1 ACTACCT
*
8349296 ACTACCC
1 ACTACCT
8349303 ACTACCT
1 ACTACCT
8349310 A
1 A
8349311 TAACCTTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.31, C:0.47, G:0.00, T:0.22
Consensus pattern (7 bp):
ACTACCT
Found at i:8349288 original size:14 final size:14
Alignment explanation
Indices: 8349266--8349310 Score: 81
Period size: 14 Copynumber: 3.2 Consensus size: 14
8349256 AAGTAGCCCA
*
8349266 CTACCACCCACTAC
1 CTACTACCCACTAC
8349280 CTACTACCCACTAC
1 CTACTACCCACTAC
8349294 CTACTACCCACTAC
1 CTACTACCCACTAC
8349308 CTA
1 CTA
8349311 TAACCTTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.29, C:0.51, G:0.00, T:0.20
Consensus pattern (14 bp):
CTACTACCCACTAC
Found at i:8352560 original size:25 final size:25
Alignment explanation
Indices: 8352511--8352566 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
8352501 CGGTTCGTGA
*
8352511 TTATACATGGCAAGGCCATAGGTTG
1 TTATACATGGCAAGGCCAGAGGTTG
*
8352536 TTATACATGGCCAGGCCACGA-GTTG
1 TTATACATGGCAAGGCCA-GAGGTTG
*
8352561 ATATAC
1 TTATAC
8352567 GTGGTTGCGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 26 0.96
26 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.27
Consensus pattern (25 bp):
TTATACATGGCAAGGCCAGAGGTTG
Found at i:8356739 original size:8 final size:8
Alignment explanation
Indices: 8356726--8356753 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
8356716 TTCATCATGC
8356726 ATCATTAA
1 ATCATTAA
8356734 ATCATTAA
1 ATCATTAA
8356742 ATCATTAA
1 ATCATTAA
8356750 ATCA
1 ATCA
8356754 AAAATCATGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (8 bp):
ATCATTAA
Found at i:8365213 original size:77 final size:78
Alignment explanation
Indices: 8365125--8365290 Score: 255
Period size: 78 Copynumber: 2.1 Consensus size: 78
8365115 AAATACTATC
* * * * * *
8365125 TATTTTAATTTTGGGTGATTTATAAAAA-ATAGGTAATTGTTTTCTACTTTAAAAGCAATTCTTA
1 TATTTTAATTTTGGGTGATTCATAAAAACATAAGAAATTGTTTCCTACCTTAAAAGAAATTCTTA
8365189 AAATTAAGGATAGA
66 AAATTAAGGATA-A
8365203 -ATTTTAATTTTGGGTGATTCATAAAAACATAAGAAATTGTTTCCTACCTTAAAAGAAATTCTTA
1 TATTTTAATTTTGGGTGATTCATAAAAACATAAGAAATTGTTTCCTACCTTAAAAGAAATTCTTA
8365267 AAATTAAGGATAA
66 AAATTAAGGATAA
8365280 TATTTTAATTT
1 TATTTTAATTT
8365291 GAGAAATTCA
Statistics
Matches: 80, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
77 27 0.34
78 53 0.66
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.42
Consensus pattern (78 bp):
TATTTTAATTTTGGGTGATTCATAAAAACATAAGAAATTGTTTCCTACCTTAAAAGAAATTCTTA
AAATTAAGGATAA
Found at i:8365719 original size:19 final size:19
Alignment explanation
Indices: 8365691--8365731 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
8365681 CAAGTGGAGA
*
8365691 ATTTTTTTAAAAAAATAAT
1 ATTTTGTTAAAAAAATAAT
*
8365710 ATTTTGTTAATAAAATAAT
1 ATTTTGTTAAAAAAATAAT
8365729 ATT
1 ATT
8365732 AAAATATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (19 bp):
ATTTTGTTAAAAAAATAAT
Found at i:8368368 original size:73 final size:74
Alignment explanation
Indices: 8368269--8368431 Score: 274
Period size: 73 Copynumber: 2.2 Consensus size: 74
8368259 CAAGAGATAG
* *
8368269 TGTTAGTCAACTAAGAGCTTACTGCCAAAAACTGGGTTCAGAGAAAGAAACGACTTAATCGACT-
1 TGTTAGTCGACTAAGAGCTTACTGCCAAAAACTGGGTTCAGAGAAAGAAACGACTTAATCAACTA
8368333 AAGAAGTTT
66 AAGAAGTTT
* *
8368342 TGTTAGTCGACTAAGAGCTTATTGCCAAAAACTGGGTTCAGAGACAGAAACGACTTAATCAACTA
1 TGTTAGTCGACTAAGAGCTTACTGCCAAAAACTGGGTTCAGAGAAAGAAACGACTTAATCAACTA
8368407 AAGAAGTTT
66 AAGAAGTTT
*
8368416 TGTTAGTCGAATAAGA
1 TGTTAGTCGACTAAGA
8368432 AGTTTTGTTA
Statistics
Matches: 84, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
73 60 0.71
74 24 0.29
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (74 bp):
TGTTAGTCGACTAAGAGCTTACTGCCAAAAACTGGGTTCAGAGAAAGAAACGACTTAATCAACTA
AAGAAGTTT
Found at i:8368502 original size:95 final size:95
Alignment explanation
Indices: 8368327--8368502 Score: 235
Period size: 95 Copynumber: 1.9 Consensus size: 95
8368317 AACGACTTAA
* * * * *
8368327 TCGACTAAGAAGTTTTGTTAGTCGACTAAGAGCTTATTGCCAAAAACTGGGTTCAGAGACAGAAA
1 TCGAATAAGAAGTTTTGTTAATCGACTAAGAGCCTACTGCCAAAAACTAGGTTCAGAGACAGAAA
8368392 CGACTTAATCAACTAAAGAAGTTTTGTTAG
66 CGACTTAATCAACTAAAGAAGTTTTGTTAG
* * * * * *
8368422 TCGAATAAGAAGTTTTGTTAATGGACTAAGTGCCTACTGTCAGAAACTAGGTTCAGGGACAGAGA
1 TCGAATAAGAAGTTTTGTTAATCGACTAAGAGCCTACTGCCAAAAACTAGGTTCAGAGACAGAAA
* *
8368487 CGACTTAGTCGACTAA
66 CGACTTAATCAACTAA
8368503 GTAATAATGT
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
95 68 1.00
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (95 bp):
TCGAATAAGAAGTTTTGTTAATCGACTAAGAGCCTACTGCCAAAAACTAGGTTCAGAGACAGAAA
CGACTTAATCAACTAAAGAAGTTTTGTTAG
Found at i:8370038 original size:18 final size:17
Alignment explanation
Indices: 8370006--8370046 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
8369996 GCTAGAACTT
8370006 AAAGAAGAAGAAAAAGA
1 AAAGAAGAAGAAAAAGA
* *
8370023 CAAGAGAGAAGCAAAAGA
1 AAAGA-AGAAGAAAAAGA
8370041 AAAGAA
1 AAAGAA
8370047 AAAAAACATT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.71, C:0.05, G:0.24, T:0.00
Consensus pattern (17 bp):
AAAGAAGAAGAAAAAGA
Found at i:8375813 original size:73 final size:73
Alignment explanation
Indices: 8375613--8375823 Score: 255
Period size: 73 Copynumber: 2.9 Consensus size: 73
8375603 AGAGATAGTA
* * * *
8375613 TTAGTCGACTAAGAGCTTACTGCCAGAAACTGGGTTCAAAGATAGAAACAACTTAATTGGCTAAG
1 TTAGTCGACTAAGAGCTTACTGCCAGAAACTGGGTTCAGAGATAGAAATAACTTAATCGACTAAG
8375678 AAGTTTTG
66 AAGTTTTG
* * * * *
8375686 TTAGTTGACTAAAAGCTTATTGCCAGAAACTGGGTTCAGAGACAGAAACT-ACTTAATCAACTAA
1 TTAGTCGACTAAGAGCTTACTGCCAGAAACTGGGTTCAGAGATAGAAA-TAACTTAATCGACTAA
8375750 GAAGTTTTG
65 GAAGTTTTG
* * * * * *
8375759 TTAGTCGACTCAGAGCTTACTACTAAAAACTGGGTTCAGGGATA-AAGATAACTTAGTCGACTAA
1 TTAGTCGACTAAGAGCTTACTGCCAGAAACTGGGTTCAGAGATAGAA-ATAACTTAATCGACTAA
8375823 G
65 G
8375824 TGATAATGTT
Statistics
Matches: 115, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
72 3 0.03
73 112 0.97
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (73 bp):
TTAGTCGACTAAGAGCTTACTGCCAGAAACTGGGTTCAGAGATAGAAATAACTTAATCGACTAAG
AAGTTTTG
Found at i:8377736 original size:18 final size:18
Alignment explanation
Indices: 8377709--8377743 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
8377699 AAGCTTACCT
8377709 AAAATAAAAAG-GTTTTC
1 AAAATAAAAAGAGTTTTC
8377726 AAAATTAAAAAGAGTTTT
1 AAAA-TAAAAAGAGTTTT
8377744 AATTATGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 7 0.44
19 5 0.31
ACGTcount: A:0.54, C:0.03, G:0.11, T:0.31
Consensus pattern (18 bp):
AAAATAAAAAGAGTTTTC
Found at i:8384784 original size:35 final size:34
Alignment explanation
Indices: 8384706--8384856 Score: 128
Period size: 35 Copynumber: 4.4 Consensus size: 34
8384696 TCTCAAGCAC
* *
8384706 TTGATTAAAATTGTTTAATTAAG---TTGTGCCTAA
1 TTGATT-AAATTATTTAATTAAGTTATTGGGCCT-A
* * *
8384739 TTCATAAAATTATTTAATTAAATTATTGGGCCTA
1 TTGATTAAATTATTTAATTAAGTTATTGGGCCTA
* * * *
8384773 GTTGATTAAATTTCTTTAATCAAGTTGTTGGGCTTAA
1 -TTGATTAAA-TTATTTAATTAAGTTATTGGGCCT-A
* *
8384810 TTGATCAAATTGTTTAATTAAGTTATTGGGCCTCA
1 TTGATTAAATTATTTAATTAAGTTATTGGGCCT-A
8384845 TTGATTAAATTA
1 TTGATTAAATTA
8384857 AACAATTAAG
Statistics
Matches: 92, Mismatches: 20, Indels: 10
0.75 0.16 0.08
Matches are distributed among these distances:
32 14 0.15
33 4 0.04
34 1 0.01
35 45 0.49
36 27 0.29
37 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.15, T:0.45
Consensus pattern (34 bp):
TTGATTAAATTATTTAATTAAGTTATTGGGCCTA
Found at i:8384836 original size:71 final size:68
Alignment explanation
Indices: 8384706--8384855 Score: 185
Period size: 71 Copynumber: 2.2 Consensus size: 68
8384696 TCTCAAGCAC
* * *
8384706 TTGATTAAAATTGTTTAATTAAGTTGTGCCTAATTCATAAAATTATTTAATTAAATTATTGGGCC
1 TTGATTAAATTTCTTTAATCAAGTTGTGCCTAATTCATAAAATTATTTAATTAAATTATTGGGCC
8384771 T-A
66 TCA
* * * * *
8384773 GTTGATTAAATTTCTTTAATCAAGTTGTTGGGCTTAATTGATCAAATTGTTTAATTAAGTTATTG
1 -TTGATTAAATTTCTTTAATCAAGTTG-T--GCCTAATTCATAAAATTATTTAATTAAATTATTG
8384838 GGCCTCA
62 GGCCTCA
8384845 TTGATTAAATT
1 TTGATTAAATT
8384856 AAACAATTAA
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
68 23 0.33
69 1 0.01
71 45 0.64
72 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.15, T:0.45
Consensus pattern (68 bp):
TTGATTAAATTTCTTTAATCAAGTTGTGCCTAATTCATAAAATTATTTAATTAAATTATTGGGCC
TCA
Found at i:8386661 original size:171 final size:169
Alignment explanation
Indices: 8385235--8396302 Score: 6507
Period size: 170 Copynumber: 65.3 Consensus size: 169
8385225 GTAGCTAGGC
* * * * * * * *
8385235 TTTCGAAGGCATGAGTGGCTATAAATAGCCATTTCTTGTCAATGGATGGCTTTTGCTACACATTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* *
8385300 -TCCTAGGCAAACATCCAATTATGAAT-TGTTTTAACCAAAAATGAAAAAAAAATTCAACTTATA
66 CT-CAAGGCAAACATCCAATTATG-ATCTGTTTTAA-CAAAAATG--AAAAAAATTCAACTTAAA
* ** *
8385363 ATCATTTACAAGATTATAAAACCT-TGCAAATCAGGTAACTAGTC
126 ATCATTTATAAGATTATAAAA-CTATTTAAATCAGGTAACTAGTA
* * * * * * *
8385407 TTTCAAAGGAATGAGTGA-TAATAAGTAGACTTTT-TCTGTCAAT-GATTGGCTTTCGTTTCACA
1 TTTCGAAGGCATGAGTGACT-ATAAATGGACTTTTCT-TATCAATGGA-TGGCTTTCGCTTCACG
* * ** * * *
8385469 TTTCTCGAGGCAAATATCTGATTATGATCTATTTTAAC---AA--AAAAAAATTCAAGTCAAAAT
63 TTTCTCAAGGCAAACATCCAATTATGATCTGTTTTAACAAAAATGAAAAAAATTCAACTTAAAAT
* * *
8385529 CATTTATAAGATTATAGAACCATTTAAAT-TGGATAACTAGTA
128 CATTTATAAGATTATAAAACTATTTAAATCAGG-TAACTAGTA
* * * * * * * *
8385571 TTTCGAAGGCATAAGTGACAATAAATAGACTGTTCTTGTCAATGGATGGTTTTCACTTCATGTTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* * *
8385636 CTCAAGGTAAACAACCAATTTTGATCTGTTTTAACCAAAAATGAAAAAAAAATTCAACTTAAAAT
66 CTCAAGGCAAACATCCAATTATGATCTGTTTTAA-CAAAAATG--AAAAAAATTCAACTTAAAAT
* *
8385701 CATTTATAAGATTATAAAA-TCATTTAAAAC-GATTAACTAGTA
128 CATTTATAAGATTATAAAACT-ATTTAAATCAG-GTAACTAGTA
* * * * * * * *
8385743 TTTCAAAGGTATGAGTGGCTATAAATAGACTTTTTTTGT-AATGGATGGCTTTTGCTTTACGTTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* ** * * * *
8385807 CCCAAGGTGAACATCTAAGTATGAACTGTTTTAACCAAAAATGAAAAACAATTCAACTTAAAGTC
66 CTCAAGGCAAACATCCAATTATGATCTGTTTTAA-CAAAAATGAAAAA-AATTCAACTTAAAATC
* * * * *
8385872 ATTTATAAGGTTATAAAACCATTTAAAGC-GACTAA-TAAGTG
129 ATTTATAAGATTATAAAACTATTTAAATCAG-GTAACT-AGTA
* * * * * ** * * * * * ** * *
8385913 TTTCAAAGGCATAAATAACTTTAAACAGAATTTTCTTATGACTGGATAGTTTTCATTTCCCTTTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* * * * * * *
8385978 CCCAGGGCAAACAACAAATTATGATTTGTTTTAACAAAAAAT-AAAAAAAATCAATTTAAAATCA
66 CTCAAGGCAAACATCCAATTATGATCTGTTTTAAC-AAAAATGAAAAAAATTCAACTTAAAATCA
* * *
8386042 TTTATAAGATTATAAAA-TCACTTAAAGC-GAGTAACTAAG-C
130 TTTATAAGATTATAAAACT-ATTTAAATCAG-GTAACT-AGTA
* * * * * *
8386082 TTTCAAAGGTAGGAGTGACTATAAAT-GAATATTTCTTA-CAAATGGATGGCTTTCCCTTCATGT
1 TTTCGAAGGCATGAGTGACTATAAATGGACT-TTTCTTATC-AATGGATGGCTTTCGCTTCACGT
* * * * * * * *
8386145 TTCCCAAGGAAAACATCTAATTAGGATCTGTTTTAACGAAAAAT-AAAAAAAATAAATTTTAAAT
64 TTCTCAAGGCAAACATCCAATTATGATCTGTTTTAAC-AAAAATGAAAAAAATTCAACTTAAAAT
* * * * * * **
8386209 TATTTTTAA-AGTTATAAAATTACTT-AATGCAAGTAGCTAGGC
128 CATTTATAAGA-TTATAAAACTATTTAAAT-CAGGTAACTAGTA
* * * * * * * * **
8386251 TTTTGAAGGCATCAATGATTATAAATAGCCATTTCTTGTCAATGGATGGCTTTCGCTTCATATTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* * * *
8386316 CCCGAGGCAAACATCCAATTATGAAT-TGTTTTAACTAAAAATTAAAAAAAATT-AACTTATAAT
66 CTCAAGGCAAACATCCAATTATG-ATCTGTTTTAAC-AAAAA-TGAAAAAAATTCAACTTAAAAT
* * * *
8386379 CATTTACAAGATTATAAAA-TCATGTAAATCGGGTAACTAGCA
128 CATTTATAAGATTATAAAACT-ATTTAAATCAGGTAACTAGTA
* * * *
8386421 TTTCGAAGGCATGAGTGACAATAAATGGACTTTT-TCTATCAATGGATGCCTTTCACTTCACATT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCT-TATCAATGGATGGCTTTCGCTTCACGTT
* * * * **
8386485 TCTCAAGGAAAACATCCAATTATGATCTATTTCAACACAAAATTAAAAAACATTCAACTCGAAAT
65 TCTCAAGGCAAACATCCAATTATGATCTGTTTTAACA-AAAATGAAAAAA-ATTCAACTTAAAAT
8386550 CATTTATAAGATTATAAAACTATTTAAATCAGGTAACTAGTA
128 CATTTATAAGATTATAAAACTATTTAAATCAGGTAACTAGTA
* * ** * * *
8386592 TTTCAAAGGCATGAGCGAAAATAAATGGACTTTTCTTATCAGTGGATGACTTTCGCTTCACATTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* * * * * * *
8386657 CTCAAGGCAAAAAGCCAATCATAATATGCTTTAACCAAAAATGAAAACAATTCAACTTAAAATCA
66 CTCAAGGCAAACATCCAATTATGATCTGTTTTAA-CAAAAATGAAAAAAATTCAACTTAAAATCA
* * ** *
8386722 TTTATAAGATTATAAAACCATTTAAAGCAACTAACTAGTG
130 TTTATAAGATTATAAAACTATTTAAATCAGGTAACTAGTA
* * * * * * *** * *
8386762 TTTCGAAGGTATGAGTGACAAGAAATGAACTTTTCTTGTGAATGCG-TTATTTTTGTTTCACGTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATG-GATGGCTTTCGCTTCACGTT
* ** * ** *
8386826 TC-CTATGGCAAACATCCAATTACAATCTATTTTAACGTTAAATGAAAAAAATTAAACTTAAAAT
65 TCTC-AAGGCAAACATCCAATTATGATCTGTTTTAAC-AAAAATGAAAAAAATTCAACTTAAAAT
** * * **
8386890 TGTTTATAAGATTATAAAACTATTGAAAGTGA-GTAACTAGGC
128 CATTTATAAGATTATAAAACTATTTAAA-TCAGGTAACTAGTA
* * * *
8386932 TTTCAAAGTCATGAATGGA-TATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTT
1 TTTCGAAGGCATGAGT-GACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTT
* ** * * *
8386996 TCTCAAGACAAATGTCCAATTATGATCTGTTTTAACAGAAAAAGAAGAAAATGCAACTTAAAATC
65 TCTCAAGGCAAACATCCAATTATGATCTGTTTTAACA-AAAATGAAAAAAATTCAACTTAAAATC
* ** * *
8387061 AGTTATAACTTTATAAAACCATTTAAAT-TGTGTAACT-GTTA
129 ATTTATAAGATTATAAAACTATTTAAATCAG-GTAACTAG-TA
* * * * *
8387102 TTTCGAACGCATGAGTGACTATATATAGACTTTTCTTATCAATGGATGACTTTCGCTTCAAGTTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* * * * * * * * *
8387167 C-CTAAGGCAAATACCCCATTATGATATATTTTAATAGAAAATGAAAAAACTTCAACTTAAGAGC
66 CTC-AAGGCAAACATCCAATTATGATCTGTTTTAACA-AAAATGAAAAAAATTCAACTTAAAATC
* * **
8387231 ATTTATAAGATTATAAAACTATTGAAAGTGA-GTAACTAGGC
129 ATTTATAAGATTATAAAACTATTTAAA-TCAGGTAACTAGTA
* * * * ** * *
8387272 TGTTAG-AGGTATGAATGGCTATAAATGGAC-TTTCTTATCAATAAATAGCTTTTGCTTCACGTT
1 T-TTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTT
* * * * *
8387335 TCCCAAGGCAAACATCCAATTATGATCTATTTTAATAGAAAAAGAAAAAAATGCAACTTAAAATC
65 TCTCAAGGCAAACATCCAATTATGATCTGTTTTAACA-AAAATGAAAAAAATTCAACTTAAAATC
* * * * * * *
8387400 AATTCTAAGTTTATAAAACCACTTAAATCAGGCAACTATTA
129 ATTTATAAGATTATAAAACTATTTAAATCAGGTAACTAGTA
* * * * * * *
8387441 TTTCAAAGGCATG-GATGACAATAAATGGACTTTTCTTGTCACTGGATGGCTTTCACTACATGTT
1 TTTCGAAGGCATGAG-TGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTT
* * ** * *
8387505 TCTCAGGGAAAACATGTAATTATGATATGTTTTAACCAAAAATGAAAAAAAATTCAATTTAAAAT
65 TCTCAAGGCAAACATCCAATTATGATCTGTTTTAA-CAAAAATG-AAAAAAATTCAACTTAAAAT
* * * * * *
8387570 CATTTATAAGATTGTAAAACCATTTAAAGC-GACTAACAAGTG
128 CATTTATAAGATTATAAAACTATTTAAATCAG-GTAACTAGTA
* ** * * * * * *** * *
8387612 TTTCAAAGAAATGAGTGA-TCGTAGATGGACTTTTCTTGTGAATGCATTATTTTTGTTTCACGTT
1 TTTCGAAGGCATGAGTGACT-ATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTT
* * * *
8387676 TC-CTAAGACTAACATCCAATTATAATCTATTTTAAC--AAA--AAAAAAATTCAACTTAAAATC
65 TCTC-AAGGCAAACATCCAATTATGATCTGTTTTAACAAAAATGAAAAAAATTCAACTTAAAATC
* * **
8387736 ATTTATAAGATTATAAAACTATTGAAAGC-GAGTAACTAGGC
129 ATTTATAAGATTATAAAACTATTTAAATCAG-GTAACTAGTA
* ** * * * *
8387777 TTTCAAAGTTATGAATGGA-TATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACATT
1 TTTCGAAGGCATGAGT-GACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTT
** * * * * *
8387841 TCTCAAGAAAAACACCCAATTATGATCTGTTTTAATAGAAAAAGAAGAAAATGCAACTTAAAATC
65 TCTCAAGGCAAACATCCAATTATGATCTGTTTTAACA-AAAATGAAAAAAATTCAACTTAAAATC
* ** * *
8387906 AGTTATAACTTTATAAAACTATTCAAAT-TGTGTAACT-GTTA
129 ATTTATAAGATTATAAAACTATTTAAATCAG-GTAACTAG-TA
* * ** * * * * * *
8387947 TTTCGAATGCATGAGTGACTACATGTAGACCTTTCTTATTAATGGATGGGTTTCACTTCAAGTTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* * * * * * * * * *
8388012 C-CTAAGACAAATACCCCATTATGATCTATTTTAACAAAAAAGGAGAAAACTTTAACTTAAAAGC
66 CTC-AAGGCAAACATCCAATTATGATCTGTTTTAAC-AAAAATGAAAAAAATTCAACTTAAAATC
* * **
8388076 ATTTATAAGATTATAAAACTATTGAAAGTGA-GTAACTAGGC
129 ATTTATAAGATTATAAAACTATTTAAA-TCAGGTAACTAGTA
* * * * * * * * *
8388117 TGTTAG-AGGCATGAATGGCTATAAATGAACTTTTCTTGTCAATAGATGACTTTTGCTTTATC-T
1 T-TTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCA-CGT
* * *
8388180 TTAC-CAAGGCAAACATCCAATTATGATCTATTTTAATAGAAAATGAAAAAAATGCAACTTAAAA
64 TT-CTCAAGGCAAACATCCAATTATGATCTGTTTTAACA-AAAATGAAAAAAATTCAACTTAAAA
* * * * * *
8388244 TCAATTCTAAGTTTATAAAACTACTTAAATCAAGTAACTATTA
127 TCATTTATAAGATTATAAAACTATTTAAATCAGGTAACTAGTA
* * * * * * * *
8388287 TTTCAAAGGCATGAGTGGCTATAAATAGACTTTTGTTGTCGATGGATGGCGTTT-TCTTCACATT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGC-TTTCGCTTCACGTT
* ** *
8388351 T-TCGAA-GCTAAACATCCAATTATGAACAATTTTAACCAAAAATGAAAAAAAAAGCTTCAAATT
65 TCTC-AAGGC-AAACATCCAATTATGATCTGTTTTAA-CAAAAATG--AAAAAAA--TTCAACTT
* * * *
8388414 TAAATCATTTATAAGATTACAAAACCATTT-AAT-GGGAATAACTAGTA
123 AAAATCATTTATAAGATTATAAAACTATTTAAATCAGG--TAACTAGTA
* * * * * *
8388461 TTTCGAAGGCATGAGTTACTATAAATGGACTTTTCTT-GCGAATGGATGGTTTTTGTTTCACTTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATC-AATGGATGGCTTTCGCTTCACGTT
* * * * * * * *
8388525 TC-CTAGGGTAAACAACAAATAATGATCTGTTTTAAAACAGAAAT-AAAAGAAAAT-AATTTAAA
65 TCTC-AAGGCAAACATCCAATTATGATCTGTTTT--AACAAAAATGAAAA-AAATTCAACTTAAA
* * * * *
8388587 ATTATTTATCAGATTATAAAA-TCACTTAAAAC-GAGTAACTAAG-C
126 ATCATTTATAAGATTATAAAACT-ATTTAAATCAG-GTAACT-AGTA
* * * * * * ***
8388631 TTTCGAAGGCATAAATAACTATAAATGGACTTTTCTT-GCAAATCGATGGCTTTCCCTTTGTGTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATC-AATGGATGGCTTTCGCTTCACGTT
* * * * * * *
8388695 T-TCCAAGGTAAATATCCAATTATGATCTATGTTAACAAAAAATG-AAAAAA-TAAATTTGAAAT
65 TCT-CAAGGCAAACATCCAATTATGATCTGTTTTAAC-AAAAATGAAAAAAATTCAACTTAAAAT
* * * *
8388757 CATTTTTAA-AGTTATAAAA-TCACTTAAAGCAAGTAAC--G-A
128 CATTTATAAGA-TTATAAAACT-ATTTAAATCAGGTAACTAGTA
* * * * * * * * *
8388796 ---GGAACGAATGAATGACTATAAATGGACATTTCTTGTCAATGAATGGCTTTCGCTTCCCATTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* * * * * *
8388858 CTCAAGGAAAACATCCAATTAATAAT-TGTTTTAACTAAAAATTAAAAACATTTAACTCAAAATC
66 CTCAAGGCAAACATCCAATT-ATGATCTGTTTTAAC-AAAAATGAAAAAAATTCAACTTAAAATC
* *** * *
8388922 ATTTATAAGATTATAAAA-TCATTTATAAGATTATAAAACCATTTAA
129 ATTTATAAGATTATAAAACT-A-TT-TAA-ATCAGGTAACTA-GT-A
** * * * * ** * * ***
8388968 AAT-GATAACTAGTATTTCGAAGGCATGAGTGACCATAAATGGACTTTT-TTATGAATGGATTAT
1 TTTCG--AA--GGCA--T-G-A-G--TGACT-A-TA-AATGGA-CTTTTCTTATCAATGGATGGC
* * ** ** * * *
8389031 TTTTGCTTCATGTTTCTTGAGATAAACATCTAATTATGATCTATTTTAACAAAAAATGAATAAAA
51 TTTCGCTTCACGTTTCTCAAGGCAAACATCCAATTATGATCTGTTTTAAC-AAAAATGAAAAAAA
* * * * **
8389096 TTCAACTTAAAATCATATATAAGATTATAAAACTATTGAACGTGA-GTAACTAGGC
115 TTCAACTTAAAATCATTTATAAGATTATAAAACTATTTAA-ATCAGGTAACTAGTA
* * * * * * * * * *
8389151 TTTCCAAAGCATGAAT-AGCTATAAATGCACTTTTATTGTCAATGGATAGCTTTTGCCTCATGTT
1 TTTCGAAGGCATGAGTGA-CTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTT
* * * * * * * *
8389215 TCCCAATGCAAACATCTAATTATGATATGTTTTAATGAAGAATAAAAAAAATTCAACTTAAAATG
65 TCTCAAGGCAAACATCCAATTATGATCTGTTTTAA-CAAAAATGAAAAAAATTCAACTTAAAATC
* * *
8389280 ATTTATAAGATTAGAAAACCATTTAAAT-AGGGGCAACTAGTA
129 ATTTATAAGATTATAAAACTATTTAAATCA--GGTAACTAGTA
** * * * * * ** *
8389322 TTTTAAAGGCGTG-GTGGCTATAAATAGACTTTTCATATTAATGGATGGCTTTTTCTTCACTTTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* * *
8389386 C-CAAAGGCAAACATCCAATTATGATCTATTTTATCAAAACATGAAAAAAATTTAACTTAAAATC
66 CTC-AAGGCAAACATCCAATTATGATCTGTTTTAACAAAA-ATGAAAAAAATTCAACTTAAAATC
* * * * * * *
8389450 ATTTATAAGACTATAAAACCACTTACAGC-GAATAATTAGGT-
129 ATTTATAAGATTATAAAACTATTTAAATCAG-GTAACTA-GTA
* * * * * * ***
8389491 TTTCGAAAGTATGAATGACTATAAAT-GACCTTTTCTTATCAATTGATGGTTTTCACTTTGTGTT
1 TTTCGAAGGCATGAGTGACTATAAATGGA-CTTTTCTTATCAATGGATGGCTTTCGCTTCACGTT
* * * * * * * * * *
8389555 TTTTAATGTAAACATCAAATTATGATTTGTTTCAACAAAAATGAGAAGAAA-TCAATTTAGAATC
65 TCTCAAGGCAAACATCCAATTATGATCTGTTTTAACAAAAATGA-AAAAAATTCAACTTAAAATC
* * * * * *
8389619 ATTT-TAATG-TTATAAAA-TCACTTAAGGTGA-GT-AGTTGGA
129 ATTTATAA-GATTATAAAACT-ATTTAA-ATCAGGTAACTAGTA
* * * * *
8389658 CTTTCGACAAG-ATGAGTTACTACAAATGGACTTTTGC-TA-CAAATAGATGGCTTTCGCTTCAT
1 -TTTCGA-AGGCATGAGTGACTATAAATGGACTTTT-CTTATC-AATGGATGGCTTTCGCTTCAC
* ** * * * *
8389720 TTTTCTTGAGTCAAACATCCAATTATGAT-TCGTTTTAATGAAAAATGAAAAAAACATCAATTTA
62 GTTTCTCAAGGCAAACATCCAATTATGATCT-GTTTTAA-CAAAAATGAAAAAAA-TTCAACTTA
* ** *
8389784 AAATCATTTTTAA-AGTTATAAAA-TCGCTTAAAGC-GAGTAACTAG-A
124 AAATCATTTATAAGA-TTATAAAACT-ATTTAAATCAG-GTAACTAGTA
* * * * * * *
8389829 CTTTTGAAGGTATTAGTGGCTATAAATGGACTTTTTTTGTCAATGGATGGCTTTCGCTTCATGTT
1 -TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTT
** * *
8389894 TCTTGAGGCAAACATCCAATTATGATATGTTTTAATGAAAAATGAAAAAGAATTCAACTTAAAAT
65 TCTCAAGGCAAACATCCAATTATGATCTGTTTTAA-CAAAAATGAAAAA-AATTCAACTTAAAAT
* *
8389959 CATTTATAAGATTATAAAACCATTTAAATCGGGTAACTAGTA
128 CATTTATAAGATTATAAAACTATTTAAATCAGGTAACTAGTA
* * * * * * * * * * *
8390001 -TTCTGAAAGCATGAGTGACAATAAATGGACTTTCCATGTGAATGGATAGCTTTTGATTTAAGTT
1 TTTC-GAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTT
* * * * * *
8390065 TC-CTGAGGCAAACATTCAATTATAAACCG-TTTAACAAAAAATTTAAAAAAA-TC--CTTAAAA
65 TCTC-AAGGCAAACATCCAATTATGATCTGTTTTAAC-AAAAA-TGAAAAAAATTCAACTTAAAA
* * * *
8390125 TCATCTATAAGAGTAGAAAACCT-TTTAAA-C-GACTAACTAGTA
127 TCATTTATAAGATTATAAAA-CTATTTAAATCAG-GTAACTAGTA
*** * * * * *
8390167 TTTCGAATATATGAGTGACTATAAATGGACTTTTTTTATTAATGGATAGCTTTTGCTTCATGTTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* * * * *
8390232 GCT-AAGGCAAACATTCAATTACGATCTATTCTAACAAAATATGAAAAAAAATT-TACTTAAAAT
66 -CTCAAGGCAAACATCCAATTATGATCTGTTTTAACAAAA-ATG-AAAAAAATTCAACTTAAAAT
* * * * **
8390295 CATTTATAAGATTGTAAAACTATTGACAGTGA-GTAACTAGGC
128 CATTTATAAGATTATAAAACTATTTA-AATCAGGTAACTAGTA
* * * * * * * ** * *
8390337 TTTCAAATGCATCAATGGCTATAAATGGACTTTTTTTGTCAATGGATGGCTTTCATTTTATGTTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* * * *
8390402 AC-CAAGGTAAACATCCAATTATGATCTATTTTAACAAAAA-AAGAAAAAATACAACTTAAAATC
66 -CTCAAGGCAAACATCCAATTATGATCTGTTTTAACAAAAATGA-AAAAAATTCAACTTAAAATC
* * * *
8390465 AGTTATAAGTTTATAAAACCATTTAAATCAGGTAACTATTA
129 ATTTATAAGATTATAAAACTATTTAAATCAGGTAACTAGTA
* *** * * * *
8390506 TTTTGAAGATGTGAGAGACTATAAATGAACTTTTTTTATCAATGGATGGCTTTCGCTTCACATTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* * * * * *
8390571 -TCAGAGGCAAACATCTAATTATGAACTGTTTTAATAAAAAATAAAAAAACAATTCAAGTCAAAA
66 CTCA-AGGCAAACATCCAATTATGATCTGTTTTAA-CAAAAAT-GAAAAA-AATTCAACTTAAAA
* * * * * *
8390635 TCCTTTATAAGATTATAAAACCATTTAAAAC-GACTAAGTAGCA
127 TCATTTATAAGATTATAAAACTATTTAAATCAG-GTAACTAGTA
* * *
8390678 TGTCAAAGGCATGAGTGACTATAAATGGATTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* * * * * *
8390743 CTCAAGGTAAATATCTAATTAT-ATATGTTTTAACGAAAATGAAAAAAA---AAATTCAAAATCA
66 CTCAAGGCAAACATCCAATTATGATCTGTTTTAACAAAAATGAAAAAAATTCAACTT-AAAATC-
* * * **
8390804 ATTT-TAA-AGTTATAAAA-TCACTTAAAACAAGTAACTAGGC
129 ATTTATAAGA-TTATAAAACT-ATTTAAATCAGGTAACTAGTA
* ** * *
8390844 TTTCGAAGGCATGAGTGACTATAAATGGACATTTCTTATCAACAGATGGCTTTCACTTCACATTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* ** * * *
8390909 CTCGAGGTGAACTTTCAATTATGAAT-TGTTTTAACCAAAAATAAAAAAAAATT-AACTTAAAAT
66 CTCAAGGCAAACATCCAATTATG-ATCTGTTTTAA-CAAAAAT-GAAAAAAATTCAACTTAAAAT
* * *
8390972 CATTTATAAGATTAATAAAACCATATGAAT-AGGGTAACTAGTA
128 CATTTATAAGATT-ATAAAACTATTTAAATCA-GGTAACTAGTA
* * * * * * *
8391015 TTTCAAAGCCATGAGTGACAAGAAATGGACATTTCTTATCAATGGATGGCTTTTGCTTCACAG-C
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCAC-GTT
* * * * *
8391079 TCTCAAGGC-AACATCTAATTAAGATCAT-CTTTAATGAAGAATGAAAAAAACTTCAACTTAAAA
65 TCTCAAGGCAAACATCCAATTATGATC-TGTTTTAA-CAAAAATGAAAAAAA-TTCAACTTAAAA
*
8391142 -C--------CATT-T---A-T-TTTAAATCAGGTAACTAGTA
127 TCATTTATAAGATTATAAAACTATTTAAATCAGGTAACTAGTA
* * * * * ** * *
8391170 TTTTGATGGTATGAGTGACTAT--ATGGACTTTTCTTGTCAATAGATGATTTTCACTTCATGTTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* ** * * *
8391233 C-CTAAGCCAAATGTCCAATTATAAACTGTTTTAATAAAAAAT-AAAAAAA---AACTTAAAATC
66 CTC-AAGGCAAACATCCAATTATGATCTGTTTTAA-CAAAAATGAAAAAAATTCAACTTAAAATC
* * * *
8391293 ATTTATAAAATTATAAAACCATTTCTAGT--GGCTAACTAGTA
129 ATTTATAAGATTATAAAACTATTT-AAATCAGG-TAACTAGTA
* * * * * **
8391334 TTTTGAAGACATGAGTAACTATAAATGGACTTTTCTCAT-AATGGATGGCTTTTGCTTTGCGTTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* * ** * * * **
8391398 CCCAAGGCAAACATCTAAGCATGAACTGTCTGAACCAAAAATGAAAAAGAATTCTGCTTAAAATC
66 CTCAAGGCAAACATCCAATTATGATCTGTTTTAA-CAAAAATGAAAAA-AATTCAACTTAAAATC
* * * * *
8391463 ATTTATAAGGTTATAAAACCATTTAAAGC-GACTAA-TAAGTG
129 ATTTATAAGATTATAAAACTATTTAAATCAG-GTAACT-AGTA
* * * * * * * * * *
8391504 TTTCGGAGGCATGAGTAACTTTAAATAGACTTTTCCTATGAATGGATGGTTTTCACTTCCCTTTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* * * * * * *
8391569 CCCGAGGCAAACAACAAATTATGATATGTTTTAACAAAAAAT-AAAAGAAAATCAATTTAAAATC
66 CTCAAGGCAAACATCCAATTATGATCTGTTTTAAC-AAAAATGAAAA-AAATTCAACTTAAAATC
* *
8391633 ATTTATAAGATTATAAAA-TCACTTAAAGC-GAGTAACTAAGCT-
129 ATTTATAAGATTATAAAACT-ATTTAAATCAG-GTAACT-AG-TA
* * * * *
8391675 TTT-GAAGGCTAT-AGTGACTATAAATGAACTTTTTTTA-CAAGCGGATGGCTTTCCCTTCATGT
1 TTTCGAAGGC-ATGAGTGACTATAAATGGACTTTTCTTATCAA-TGGATGGCTTTCGCTTCACGT
* * * * * * * * *
8391737 TTCCCAAGGAAAACATCTAGTTAGGATCTGTTTTAAGGACAAATGAAAAAAA-TAAATTTAAAAT
64 TTCTCAAGGCAAACATCCAATTATGATCTGTTTTAA-CAAAAATGAAAAAAATTCAACTTAAAAT
** ** * *
8391801 CAATTT-TAA-AGTTATAAAA-TCACATAACGCAAGTAGCTAG-A
128 C-ATTTATAAGA-TTATAAAACT-ATTTAAATCAGGTAACTAGTA
* * * * **
8391842 CTTTCGAAGGCATGGGTGACTATAAATAGTCATTTCTTATCAATGGATGGCTTTCGCTTCATATT
1 -TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTT
* * * * *
8391907 TCTCATGGAAAACATCCAATTATGAAT-TGTTTTAACCAAAAATTAAAAAAAAATCAACTTATAA
65 TCTCAAGGCAAACATCCAATTATG-ATCTGTTTTAA-CAAAAA-TGAAAAAAATTCAACTTAAAA
** * * * *
8391971 TCATTTACCAGATTATAAAACCATGTACATCGGGTAACTAGTA
127 TCATTTATAAGATTATAAAACTATTTAAATCAGGTAACTAGTA
* * * * * * * *
8392014 TTTTGATGGCATGAGTG-GTAATAAATAGACTTTTCCTATTAATGGATGGCTTTTGCTTCACATT
1 TTTCGAAGGCATGAGTGACT-ATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTT
** * * * *
8392078 TCTTGA-GCAAACATCCAATTATGATTTATTTTTAA-AAAAATAAAAAAAAATTCAACTCAAAAT
65 TCTCAAGGCAAACATCCAATTATGATCT-GTTTTAACAAAAAT-GAAAAAAATTCAACTTAAAAT
* **
8392141 CATTTATAAGATTATAAAACCATTTAAATTGGGTAACTAGTA
128 CATTTATAAGATTATAAAACTATTTAAATCAGGTAACTAGTA
** * *
8392183 TTTTAAACGTATGAGTGA-TAATAAATGGA-TTTTCCTTATCAATGGATGGCTTTCGCTTCACGT
1 TTTCGAAGGCATGAGTGACT-ATAAATGGACTTTT-CTTATCAATGGATGGCTTTCGCTTCACGT
*
8392246 TTCTCAAGGCAAACATCCAATTATGATCTGTTTCAACCAAAAATGAAAAAAATTCAACTTAAAAT
64 TTCTCAAGGCAAACATCCAATTATGATCTGTTTTAA-CAAAAATGAAAAAAATTCAACTTAAAAT
* * * * * *
8392311 GATTTATAAGATTATAAAACCATTTATAGC-GACTAACTAGTG
128 CATTTATAAGATTATAAAACTATTTAAATCAG-GTAACTAGTA
* * * * * * * * *** * *
8392353 TTTCGAAGGTATGAGCGACCACAAATAGACTTTTCTTGTGAATGCATTATTTTTGTTTCACGTTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* * * *
8392418 C-CTAAGGCAAACATCTAATTACGATCTATTTTAATGAAAAATGAAAAAAAATTCAACTTAAAAT
66 CTC-AAGGCAAACATCCAATTATGATCTGTTTTAA-CAAAAATG-AAAAAAATTCAACTTAAAAT
* * * * * **
8392482 CGTTTATAAAAATATAAAATATAAAATAATTAAAAGTGA-GTAACTAGGC
128 CATTTAT-AAGAT-T---ATA-AAACT-ATTTAAA-TCAGGTAACTAGTA
* * * * * * *
8392531 TTTCAAAGTCATGAATGGA-TATAAATGGATTTTTCTTGTCAATGGATAGCTTTCACTTCACGTT
1 TTTCGAAGGCATGAGT-GACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTT
* * * * * *
8392595 TC-CAAAGGTAATCATCCAATTATGATCTGTTTTAACAGAAAAAGAAGAAAATGCCACTTAAAAT
65 TCTC-AAGGCAAACATCCAATTATGATCTGTTTTAACA-AAAATGAAAAAAATTCAACTTAAAAT
* * * * *
8392659 CAGTTATAAGCTTATAAAACTATTAAAAGC-GAGTAACTAAG-C
128 CATTTATAAGATTATAAAACTATTTAAATCAG-GTAACT-AGTA
* * * * ** * * * * * *
8392701 TTTCAAAAGCATGAATGGCTATAAATACACTTTTGTCATCAATGGATGACTTTCACCTCACATTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* * * * * * *
8392766 -TCCAATGCAAATATCTAATTATGATCTGTTTTAATGAAGAAT-AAAAAAAATCAACTTAAAATG
66 CT-CAAGGCAAACATCCAATTATGATCTGTTTTAA-CAAAAATGAAAAAAATTCAACTTAAAATC
* * *
8392829 ATTTATAAGATTAAAAAAGC-ATTTAAATCAGGGCAGCTAGTA
129 ATTTATAAGATTATAAAA-CTATTTAAATCA-GGTAACTAGTA
* * * * ** * *
8392871 TTTCAAAGGCATGAGTGACTATAGATGAACTTTTCTTATTAATGGATCACTTTTGCTTCACTTTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* * * * *
8392936 C-CAAAGGAAAACATCCAATTATGAACTATTTTATCCAAAAAT-AAAAAAATTTAACTTAAAATC
66 CTC-AAGGCAAACATCCAATTATGATCTGTTTTA-ACAAAAATGAAAAAAATTCAACTTAAAATC
* ** * * * * * **
8392999 GTTTAATAA-ACAACAAAACCACTTAAAGCGGGTAACTAGCC
129 ATTT-ATAAGATTATAAAACTATTTAAATCAGGTAACTAGTA
** * * * * * * *
8393040 TTTCGAAGGCATGAAAGACTATAAATGGCCTTGTCTTATCAATTGATTGTTTTCACTTTGCA-TT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGC-TT-CACGT
* * * * * *
8393104 TTC-CAATGTAAACATCAAATTATGAT-T-TTTCTCAATAAAAAAT-AAAAAGAAATCAATTTAA
64 TTCTCAAGGCAAACATCCAATTATGATCTGTTT-T-AA-CAAAAATGAAAAA-AATTCAACTTAA
* * * * ** * **
8393165 AATCATTTTTAA-AGTTATAAAA-TCACTTAAGGT-AAGTAGTTGGGC
125 AATCATTTATAAGA-TTATAAAACT-ATTTAA-ATCAGGTAACTAGTA
* ** * * ** * * *
8393210 TTTAGAAGATATAAGTCACTATAAATAAACTTTTATT-GCAAATGGATGGCTGTCGCTTCACGTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATC-AATGGATGGCTTTCGCTTCACGTT
** * ** * * *
8393274 TCTTGAGGCAAACATCCAATTATGTTCTGTTTTAGTGAAAAATTAAAAAGA-TCAATTTAAAATC
65 TCTCAAGGCAAACATCCAATTATGATCTGTTTTA-ACAAAAATGAAAAAAATTCAACTTAAAATC
* * *
8393338 ATTTTTAA-AGTTATAAAA-TCACTTAAAGC-GAGTAACTAG-A
129 ATTTATAAGA-TTATAAAACT-ATTTAAATCAG-GTAACTAGTA
* * * *
8393378 CTTTCGAAGGCATGAGTTG-CTACAAATGGACTTTTCTTGTCAATGGATGACTTTCGCTTCATGT
1 -TTTCGAAGGCATGAG-TGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGT
* * * * * *
8393442 TTCTCAAAGTAAATATCCAATTATGATATGTTTTAATGAAAAATGAATAAGAATTCAACTTAAAA
64 TTCTCAAGGCAAACATCCAATTATGATCTGTTTTAA-CAAAAATGAA-AAAAATTCAACTTAAAA
*
8393507 TCATTTATAAGATTATAAAACTATTTAAATCGGGTAACTAGTA
127 TCATTTATAAGATTATAAAACTATTTAAATCAGGTAACTAGTA
* * * * * * * * *
8393550 TTTCAAAGGCATGAGTAACGATAAATGGGCCTTTCTTGTCAATGGATGACTTTTGCTTTACGTTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
** * * * * *
8393615 CTTGAGGTAACCATCCAATTATGATCTATTTTAACATAGAATGAAAAATAATTCAACTTAAAATT
66 CTCAAGGCAAACATCCAATTATGATCTGTTTTAACA-AAAATGAAAAA-AATTCAACTTAAAATC
* * * *
8393680 ATTTATAAGATTATAAAGCCATTTAAATTAGGTGACTAGTA
129 ATTTATAAGATTATAAAACTATTTAAATCAGGTAACTAGTA
* * * *
8393721 TTTCGAAGGCATGAGTGACTATAAGTGGACCTTTCTTTTCAATGGATGGCTTTCACTTCACGTTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* * * * * * * *
8393786 C-CTAAGGGAAACATCTAAGTATAAACTATTTTAACCAAAAATAAAAAAAAATTCAACTTAAAAG
66 CTC-AAGGCAAACATCCAATTATGATCTGTTTTAA-CAAAAAT-GAAAAAAATTCAACTTAAAAT
* **
8393850 CA-TTACTAATATTATAAAACTATTTAAAGT-AACTAACTAGTA
128 CATTTA-TAAGATTATAAAACTATTTAAA-TCAGGTAACTAGTA
* * * * *
8393892 TTTCGAACGCATAAGTGACTATAAATGGACTTTTCTTATTAGTGGATGGCTTTCGCTTCACATTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
** ** ** * * * *
8393957 CTTGAGGCAAACATTAAATTACAACCTATTTTCATA-AAAAATGAAAAACAAATCACCTTAAAAT
66 CTCAAGGCAAACATCCAATTATGATCTGTTTT-A-ACAAAAATGAAAAA-AATTCAACTTAAAAT
* * **
8394021 CATTTATAAGATTATAAAACTATTGAAAGC-GAGTAACTAGGC
128 CATTTATAAGATTATAAAACTATTTAAATCAG-GTAACTAGTA
* * * * * * * * * *
8394063 TTTCAAAGGCATGAATGACTATAAATGAAC-TTTCTTTGTTAATAGATAGCTTTCGGTCCATGTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTC-TTATCAATGGATGGCTTTCGCTTCACGTT
* * * * * *
8394127 TC-CTAAGACAAACATCCAATTAAGATATGTGTTAACAAAAAAGAAAAAAATGCAACTTAAAATC
65 TCTC-AAGGCAAACATCCAATTATGATCTGTTTTAACAAAAATGAAAAAAATTCAACTTAAAATC
* * * * *
8394191 AGTTATAAGTTTATAAAACCATTTAAAT-TGAGTAACTATTA
129 ATTTATAAGATTATAAAACTATTTAAATCAG-GTAACTAGTA
* * *** ** * ** ** *
8394232 TTTTGAATGCAT-AAACAGCTATAAATTAACTTTTCTTGTCAATGGATGAATTTTACTTCATGTT
1 TTTCGAAGGCATGAGTGA-CTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTT
* * *
8394296 T-TCAGAGGCAAACATCCAATTATGAACTGTTTTAATGATAAATGAAAAAGAATTCAACTTAAAA
65 TCTCA-AGGCAAACATCCAATTATGATCTGTTTTAA-CAAAAATGAAAAA-AATTCAACTTAAAA
* * * * *
8394360 TCATTTATAAGATTGTAAAA-TCATTTAAAGC-GACTAATTGGTA
127 TCATTTATAAGATTATAAAACT-ATTTAAATCAG-GTAACTAGTA
* * * * ** *
8394403 TTTTGAAGGCATGAGTGACTATAAATGGAC-TTTCTTGTGAATGGGTGG-TTTTACTTCACTTTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* * * *
8394466 C-CTGAGGCAAACAAT-AAATTATGATCTG-TTTGACAAAAAAT-AAAAAAATT-AATTTAAAAT
66 CTC-AAGGCAAAC-ATCCAATTATGATCTGTTTTAAC-AAAAATGAAAAAAATTCAACTTAAAAT
* * * * * *
8394526 CATTTATAAGATTAGAAAATTACTAAAAGC-GAGTAACTAAG-C
128 CATTTATAAGATTATAAAACTATTTAAATCAG-GTAACT-AGTA
* * * * * *
8394568 TTTCGAAGGCATAAGTGGCAATCAATGGACTTTTCTTA-CAAATAGATGGCTTTTC-CTTCATGT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATC-AATGGATGGC-TTTCGCTTCACGT
* * * * * *
8394631 TAC-CTAAGGCAAACATCCAAATATGGA-CTATTTTTAATAAAAAATTCAAAAGAATTCAACTTA
64 TTCTC-AAGGCAAACATCCAATTAT-GATCT-GTTTTAA-CAAAAA-TGAAAAAAATTCAACTTA
* * * * * *
8394694 AAATCATTTATAAGATTGTAAAACCATTTAGAGC-GACTAATTAGTA
124 AAATCATTTATAAGATTATAAAACTATTTAAATCAG-GTAACTAGTA
** * * * * *
8394740 TTTTAAAGGCATGAGTGACCATAAATGGACTTTTCTTATGAATGGATGGTTTTTGCTTCACTTTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* *
8394805 C-CTAAGGCAAACAAT-AAATTATGATCTG-TTTAACAAAAAAT-AAAAAAA-TCAATTTAAAAT
66 CTC-AAGGCAAAC-ATCCAATTATGATCTGTTTTAAC-AAAAATGAAAAAAATTCAACTTAAAAT
** * * *
8394865 CATTTATAAGAAAATAAAA-TCACTTAAAGC-GAGTAATTAAGCT-
128 CATTTATAAGATTATAAAACT-ATTTAAATCAG-GTAACT-AG-TA
** * * *
8394908 TTT-GAAGGCACAAGTGACAATAAATGGACTTTTCTTA-CAAATGGATGGCTTTCCCTTCATGTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATC-AATGGATGGCTTTCGCTTCACGTT
* * * * * *
8394971 TC-CAAAGGCCAACATCCAATTATGATATGTTTTAATGAAAAATGAAAAAAAATAAATTTAAAAT
65 TCTC-AAGGCAAACATCCAATTATGATCTGTTTTAA-CAAAAATGAAAAAAATTCAACTTAAAAT
* * ** * *
8395035 TATTTTTACAG-TTATAAAA-TCGCTTAAAGCAAGTAACTAG-A
128 CATTTATA-AGATTATAAAACT-ATTTAAATCAGGTAACTAGTA
* * * * *
8395076 CTTTCGAAGGCATGAGCGACTATAAATGGA-TATTTCTTGTCAATGGATAGCTTTTGCTTCACAT
1 -TTTCGAAGGCATGAGTGACTATAAATGGACT-TTTCTTATCAATGGATGGCTTTCGCTTCACGT
** * * ** *
8395140 TTCTTGAGGCAAACATCTAATTATGAAC-AATTTAATCAAAAAT-AAAAAAAATCAACTT--AAT
64 TTCTCAAGGCAAACATCCAATTATGATCTGTTTTAA-CAAAAATGAAAAAAATTCAACTTAAAAT
*
8395201 CATTTATAAGATTATAAAAGC-ATTTAAAGC-GGCTAACTAGTA
128 CATTTATAAGATTATAAAA-CTATTTAAATCAGG-TAACTAGTA
* * * * * * *
8395243 TTTCGAATGCATGAGTGAGTATAAATAGACTTTTCTTGTCAATAGATGTCTTTCGTTTCACGTTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* * ** *
8395308 CTCGAGGCAAACATCCAAGTATGAAATGTTTTAACCAAAAATGAAAACAAAATCAACTTAAAATC
66 CTCAAGGCAAACATCCAATTATGATCTGTTTTAA-CAAAAATGAAAA-AAATTCAACTTAAAATC
* *
8395373 ATTTATAGGATTATAAAACTATTTAAA-GAGGCTAACTAGTA
129 ATTTATAAGATTATAAAACTATTTAAATCAGG-TAACTAGTA
* * * * *
8395414 TTTTGAATGCATGAGTGACAATAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACATTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* * * *
8395479 CT-AGAGGCAAACATCTAAGTATGAAT-TGTTTTAACATAAATGAAATAGAATTCAACTTAAAAT
66 CTCA-AGGCAAACATCCAATTATG-ATCTGTTTTAACAAAAATGAAA-AAAATTCAACTTAAAAT
** * * * *
8395542 CATTTATAAGATTATAAAACCCTTTAAAGC-GACTAATTAGCA
128 CATTTATAAGATTATAAAACTATTTAAATCAG-GTAACTAGTA
* * * * *
8395584 TTTCGAAGGCATGAGTGACTATAAATGGAC-TTTCTTGTCAATTGATGGCTTTTGCTTGACATTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* * * * * * *
8395648 CTCGAGGTAAACGTGCAATTATAAACTGTTTTAACTAAAAATGAAAAAAA---AACCTTCAAATG
66 CTCAAGGCAAACATCCAATTATGATCTGTTTTAAC-AAAAATGAAAAAAATTCAA-CTTAAAAT-
** * * *
8395710 C-TTTATAATCTTAT-AAA-TGATTTGAAGTGA-TTAACTAGTA
128 CATTTATAAGATTATAAAACT-ATTT-AAATCAGGTAACTAGTA
* * * * * * * * *
8395750 TTTCAAATGCATCAATGACTATAAATGGACTTTTCTTATCAGTAGATGGCTTTCGATTTACATTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* *
8395815 CAT-AAGGCAAACATCCAATTATGATCT-ATTTAACAAAAATGAAAAAAACTCAACCTT-AAATC
66 C-TCAAGGCAAACATCCAATTATGATCTGTTTTAACAAAAATGAAAAAAATTCAA-CTTAAAATC
* ** * **
8395877 ATTTATAAAATTATAAAACTATCGAAAGTGA-GTAACTAGGC
129 ATTTATAAGATTATAAAACTATTTAAA-TCAGGTAACTAGTA
* * * * * ** * *
8395918 TTTCAAAGGTATGAATGGCTATAAATGGACTTTTCTTCTCAATGGATGATTTTTGCTTCACATTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* * * * * * * *
8395983 TTTAAGGCAAACATTCAATTTTGATCTG-TTT-----GAATAAAAAAAATACAACTTAAAATCAG
66 CTCAAGGCAAACATCCAATTATGATCTGTTTTAACAAAAATGAAAAAAATTCAACTTAAAATCAT
* * * * * *
8396042 ATATAAGTTTATAAAACCATTTAAATCCGTTAACTATTA
131 TTATAAGATTATAAAACTATTTAAATCAGGTAACTAGTA
* * * * * **
8396081 TTTTGAAGGCATGAGTGACCATAAATGAACTTTTCTTGTTAATGGATGGCTTTTTCTTCACGTTT
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
* * * * *
8396146 C-CGGAGGCAAACATCCAATTATGAAT-TGTTTGAACCCAAAATGAAAAAATAGTTCAAATTAAT
66 CTC-AAGGCAAACATCCAATTATG-ATCTGTTTTAA-CAAAAATGAAAAAA-A-TTCAACTTAAA
* * * * *
8396209 ATCATTTATAAGATTATAAGACCATTTAAAGCTA-CTAACTAGTT
126 ATCATTTATAAGATTATAAAACTATTTAAATC-AGGTAACTAGTA
* * *
8396253 TTTTGAAGGCATGAGTGACTATAAATGCATTTTTCTTATCAATGGATGGC
1 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGC
8396303 ATTTGTAATG
Statistics
Matches: 8457, Mismatches: 1929, Indels: 1020
0.74 0.17 0.09
Matches are distributed among these distances:
149 9 0.00
150 1 0.00
152 2 0.00
153 43 0.01
154 22 0.00
155 31 0.00
156 1 0.00
157 1 0.00
158 3 0.00
159 1 0.00
160 1 0.00
162 83 0.01
163 131 0.02
164 182 0.02
165 269 0.03
166 391 0.05
167 316 0.04
168 362 0.04
169 1393 0.16
170 2618 0.31
171 1681 0.20
172 528 0.06
173 20 0.00
174 106 0.01
175 8 0.00
176 11 0.00
177 27 0.00
178 93 0.01
179 2 0.00
180 4 0.00
181 1 0.00
182 3 0.00
183 1 0.00
185 8 0.00
186 5 0.00
187 7 0.00
188 87 0.01
189 5 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (169 bp):
TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTT
CTCAAGGCAAACATCCAATTATGATCTGTTTTAACAAAAATGAAAAAAATTCAACTTAAAATCAT
TTATAAGATTATAAAACTATTTAAATCAGGTAACTAGTA
Found at i:8388941 original size:20 final size:20
Alignment explanation
Indices: 8388916--8388966 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
8388906 CATTTAACTC
8388916 AAAATCATTTATAAGATTAT
1 AAAATCATTTATAAGATTAT
8388936 AAAATCATTTATAAGATTAT
1 AAAATCATTTATAAGATTAT
*
8388956 AAAACCATTTA
1 AAAATCATTTA
8388967 AAATGATAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.51, C:0.08, G:0.04, T:0.37
Consensus pattern (20 bp):
AAAATCATTTATAAGATTAT
Found at i:8399308 original size:21 final size:23
Alignment explanation
Indices: 8399256--8399308 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 23
8399246 TGTTTCCTTT
*
8399256 TATTTCATTTGTATTACATTTCA
1 TATTTCATTTGTATTACAATTCA
* *
8399279 TATGT-ATTT-TATTGCAATTCA
1 TATTTCATTTGTATTACAATTCA
8399300 T-TTTCATTT
1 TATTTCATTT
8399309 CCCTTCAATG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 2 0.08
21 15 0.60
22 4 0.16
23 4 0.16
ACGTcount: A:0.25, C:0.11, G:0.06, T:0.58
Consensus pattern (23 bp):
TATTTCATTTGTATTACAATTCA
Found at i:8400876 original size:171 final size:169
Alignment explanation
Indices: 8400164--8417064 Score: 9608
Period size: 171 Copynumber: 99.5 Consensus size: 169
8400154 GGTTGTTACA
* * * * * * * * * *
8400164 GCTTTTGCTTCACATGTCCCAACGCAAACATCCAAGTGTGAATTGTTTTAACCAAAATGAGAAAG
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAACAAAAATGAAAAAA
* * *
8400229 AATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGACTAATTAGTATTTCGAAG
66 AATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGAGTAACTAGTATTTCAAAG
* * *
8400294 GTATAAGTGAC--TAAATGGACTTTTCTTGTGAAT-GA--
130 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * * * * * *
8400329 GCAGTTTCGCTTCAC-TTTTTCCAAGGCAAAAAACAAATTATGATCTGTTTTAACAAAAAATG-A
1 GC--TTTTGCTTCACATTTCT-CAAGGCAAACATCCAATTATGAACTATTTTAAC-AAAAATGAA
* *** * * *
8400392 AAAATA-TCCGTTTAAAATCATTTAAAAGATAATAAAATCAC-TTAAAGTGAGTAACTAAGCT-T
62 AAAAAATTCAACTTAAAATCATTTATAAGATTATAAAA-C-CTTTAAAGCGAGTAACT-AG-TAT
* * * ** * *
8400454 TT-GAATGCATGAGTGAATATAAATAAACTTTTCTTAG-AAATGAATG
123 TTCAAAGGCATGAGTGACTATAAATGGACTTTTCTT-GTCAATGGATG
** ** * * *
8400500 GCTTTCCCTTCATGTTTC-CAAGGCAAACATCCAATTATGATCTTTTTTAATGAAAAAT-AAAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAAAAA
* * * ** *
8400563 AAA---AATTTAAAATCATTTTTAA-AGTTATAAAACCACTTAAAG-GAAGTAACTAGGCTTTTA
65 AAATTCAACTTAAAATCATTTATAAGA-TTATAAAACC-TTTAAAGCG-AGTAACTAGTATTTCA
* * *
8400623 AAGGTATGAATGACTATAAATAGG-CATTTCTTGTCAATGGATG
127 AAGGCATGAGTGACTATAAAT-GGACTTTTCTTGTCAATGGATG
* * ** *
8400666 GCTTTCGCTTCATATTTCTTGAGGCAAACATCCAATTATGAACTATTTTAAGCAAGAATGAAAAC
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAAAA-
* *
8400731 AAAATTCAACTTAAAATCATTTATAAAATTATAAAACCTTTAAAGCGACTAACTAGTATTTCAAA
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAACCTTTAAAGCGAGTAACTAGTATTTCAAA
* * * * ** *
8400796 GGCATGAGTCACCATAAATGGACTTTTTTTGTGAACAGATT
129 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
** * * * * *
8400837 ATTTTTGCTTTACATTTCTCAAGACAAACATCTAATTATGATCTATTTT--------TAAAAAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAACAAAAATGAAAAAA
* * * * * *
8400894 AATT-AGCTTAAAATCATTTATAAGATTA-CACAGCTATTGAAAGTGAGTAACTGAG-CTTTCAA
66 AATTCAACTTAAAATCATTTATAAGATTATAAAACCT-TT-AAAGCGAGTAACT-AGTATTTCAA
* * * * * *
8400956 AGACATGAATGGCTATAAATAGACTTTTGTTATCAATGGATG
128 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
** * ** *** * * ** *
8400998 GCTTTCACCTCATGTTT-TCAAATTTAAACATCCAATTATGATCTATTCTAGTGAAGAATG-AAA
1 GCTTTTGCTTCACATTTCTC-AAGGCAAACATCCAATTATGAACTATTTTA-ACAAAAATGAAAA
* * * * * *
8401061 AAAGTTCAACTTCAAATCATTTATAAGATTAGAAAACCACTTAAATCGGGGTAACTAGTATTTCA
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGC-GAGTAACTAGTATTTCA
* * * * * *
8401126 AAAGCATGAGTGACTATATATGAACTTTTCTTATTAATGAATG
127 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * * * *
8401169 GCTTTCGCTTTAC-TGTT-TCAAAGGAAAACATCCAAATATGATCTATTTTAACAAAAAATGAAA
1 GCTTTTGCTTCACAT-TTCTC-AAGGCAAACATCCAATTATGAACTATTTTAAC-AAAAATGAAA
* * ** * * **
8401232 AAAAATTCAACTTAAAATCATTTATTACATTATAAAATCAC-TTAAAATGTGTAATTAGGCTTTC
63 AAAAATTCAACTTAAAATCATTTATAAGATTATAAAA-C-CTTTAAAGCGAGTAACTAGTATTTC
* * * * * *
8401296 GAAGGCATGAATG-CTGTAAATGG-CCTTTCTTGTCAATTGATA
126 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
** * * * * * *
8401338 G-TTTTCGCTTCATGTTT-TCCAACGTAAACATCAAATTATG-A-TCTGTCAACAAAAAATGAAA
1 GCTTTT-GCTTCACATTTCT-CAAGGCAAACATCCAATTATGAACTATTTTAAC-AAAAATGAAA
* * * * * * * * **
8401399 AAAAAATCAATTTAAAATTATTTTTAA-ATTTATAAAA-TTACTTAAGGTGAGTAGCTAGGCTTT
63 AAAAATTCAACTTAAAATCATTTATAAGA-TTATAAAACCT--TTAAAGCGAGTAACTAGTATTT
* * * * * * * *
8401462 CGAAGGTATGAATCACTATAAATAGACTTTTGC-T-ACAAATAGAGG
125 CAAAGGCATGAGTGACTATAAATGGACTTTT-CTTGTC-AATGGATG
** * * * * * *
8401507 GCTTTTGCTTCATGTTTATCAAGGGAAACATCAAATTATGATCTGTTTTAAAGAAAAATG-AAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTT-AACAAAAATGAAAAA
* * * * *
8401571 AAA-TCAATTTAAAATTATTTATAA-AGTTATAAAATCGTTTAAAGCTAGTAACAAG-ACTTTCA
65 AAATTCAACTTAAAATCATTTATAAGA-TTATAAAA-CCTTTAAAGCGAGTAACTAGTA-TTTCA
* * * **
8401633 AAGGCATGGGTGGCTATAAATGGACATTTCTTAACAATGGATG
127 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
** * * * * *
8401676 GCTTTTGCTTCATGTTTC-CTAAGGTAAACATCCAATTTTGATCTGTTTT-A-ATAAAT----AA
1 GCTTTTGCTTCACATTTCTC-AAGGCAAACATCCAATTATGAACTATTTTAACAAAAATGAAAAA
* * * *
8401734 AAA-TCAACTCAAAATCATTGATAAGATTATAAAACCATTTAAATCGAGTAACTAGTATTTCAAG
65 AAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGAGTAACTAGTATTTCAAA
* * *
8401798 GGCATGACTGACAATAAATGGACTTTTTTTGTCAATGGATG
129 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* ** * * *
8401839 GCTTTTGCTTTATGTTTCTCAAGGAAAACATCCAATTATGATA-TGTTTTAATAAAAAATG-AAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGA-ACTATTTTAA-CAAAAATGAAAA
* * * ** *
8401902 CAAATTTAACTTAAAACCATTTATAAGATTATAAAA-CTAATTAAA-TTAGGTAACTAGTATTGC
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAACCT--TTAAAGCGA-GTAACTAGTATTTC
* * * * *
8401965 GAAGGCATGAGTGACTATATATGAACTTTTCTTGCCAATAGATG
126 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * * * * * *
8402009 GCTTTCGCTTCAC-GTTCCCTAAGGTAAACATCCAATTATGATCTGTTTTAATAAAAAAT-AACA
1 GCTTTTGCTTCACATTTCTC-AAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAA-A
* * * * * *
8402072 AAAAATTCAACTCAAAATCATTGATAAGATTATAAAACCATTTAGATCGGGTAACTAGTATTTTG
63 AAAAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGAGTAACTAGTA-TTTC
* * *
8402137 AGAA--CATGAGTGACAATAAATGAACTTTTCTTGTCAATGGATA
126 A-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* ** * * * * * *
8402180 GCTTTTGCTTTATGTTTCTCGAGGCAAACATCCAATTATGATCTCTTTTAATGAAGAATG-AAAC
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAAAAA
* * * * * *
8402244 AAATTTAACTTAAAACCATTTATAAGATTATAAAACCAATTAAATC-AGGTAACTAGTATTGCGA
65 AAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGA-GTAACTAGTATTTCAA
* * *
8402308 AGGCATGAGTGATTATATATGAACTTTTCTTGTCAATGGATG
128 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * * * * *
8402350 GCTTTCGCTTCACGTTTC-CTAAGGTAAACATCCAATTATAAACTACTTTAAGTAAAAATGAAAA
1 GCTTTTGCTTCACATTTCTC-AAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAAAA
* * * * * * *
8402414 TAAA---AATTTAAAGTCATTTATAAGATTAT-AAACTATTTAAAGAGACT-ACTTAGTATTTCG
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAAC-CTTTAAAGCGAGTAAC-TAGTATTTCA
* ** * * *
8402474 AACGCATGAAAGACTATAAATGGACTTTTCTTATTAGTGGATG
127 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* ** *
8402517 GCTTTCGCTTCATGTTTC-CTAAGGCAAACATCCAATTA-CAATCTATTTTAACAAAAACTG-AA
1 GCTTTTGCTTCACATTTCTC-AAGGCAAACATCCAATTATGAA-CTATTTTAACAAAAA-TGAAA
* * * * **
8402579 AAATATTCAACTTAAAATCATCTATGAGATTATAAAA-CTATTGAAAGTGAGTAACTAGGCTTTC
63 AAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCT-TT-AAAGCGAGTAACTAGTATTTC
* *
8402643 AAAGGCATGAATGGCTATAAATGGACTTTTCTTGTCAATGGATG
126 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
** * * * ** * *
8402687 GCTTTCACTTCACATTTCTTAAGG-ATAAAATCCAATAATGATGTATTTCAATAAAAA--AAAGA
1 GCTTTTGCTTCACATTTCTCAAGGCA-AACATCCAATTATGAACTATTTTAACAAAAATGAAA-A
* * * * * * ** *
8402749 AAAGCATTCAAGTTAAAATCTTTTATGAGATAATACAACTATTTAAAGTAACTAACTAGTATTTC
64 AAA--ATTCAACTTAAAATCATTTATAAGATTATAAAAC-CTTTAAAGCGAGTAACTAGTATTTC
* * * * * *
8402814 GAAGGCATAAGTGACTGTAAATAGACTTTTCTTCTGAATGGAT-
126 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
** ** ** * ** * *
8402857 TATATTTGCTTCATGTTTCTTGAGGCAAACATCTAGGTATGAATTGTTTTAACCAAAAATGAAAA
1 GCT-TTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAAAA
* * * * * *
8402922 AGAATTCAACTTAAAATTATTTATAAGATTATAAAACCATTTAAAGTGACTAACTTGTATTTCGA
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGAGTAACTAGTATTTCAA
* * * *
8402987 ATGCATGAATGGCTATAAATAGACTTTTTCTATG--AATGGATG
128 AGGCATGAGTGACTATAAATGGAC-TTTTCT-TGTCAATGGATG
* * * * *** *
8403029 G-TTTTCGCTTCACTTTTCCCGAGGCAAATAAGAAATTAT-AATCTTTTTTAACAAAAAATGAAA
1 GCTTTT-GCTTCACATTTCTCAAGGCAAACATCCAATTATGAA-CTATTTTAAC-AAAAATGAAA
* * * * * * *
8403092 ATAAA-TCAATTTAAAATTATTTATAAGATTGTAAAACCACTTAAAGCGAATAACTAAG-CTTTC
63 AAAAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGAGTAACT-AGTATTTC
* * * * *
8403155 GAAA-GTATGAGTGACTATAAATGAACTTTTCTTAG-AAATCGATA
126 -AAAGGCATGAGTGACTATAAATGGACTTTTCTT-GTCAATGGATG
* * * * * * * * *
8403199 GTTTTTCCTTCACGTTTTTCTAGGTAAATATTCAA-TAT-AATCTATTTTAATAAAAAT-AAAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAA-CTATTTTAACAAAAATGAAAAA
* * * * * * **
8403261 AAA-TAAATTTAAAATCATTTCTGATATTATAAAATCAC-GTAAAGTAAGTAACTAGGT-TTTCA
65 AAATTCAACTTAAAATCATTTATAAGATTATAAAA-C-CTTTAAAGCGAGTAACTA-GTATTTCA
* *
8403323 AAGGCATGAATGACTATAAATGGACATTTCTTGTCAATGGATG
127 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * * * * *
8403366 GCTTTAGCTTCACATTTC-CTGACGCAAACATACAATTATCAACAATTTTAACTAAAAATGAAAA
1 GCTTTTGCTTCACATTTCTC-AAGGCAAACATCCAATTATGAACTATTTTAAC-AAAAATG-AAA
* * * * * * *
8403430 AAAAATTGAACTTAAGATCATTTATAAGATTATAAAACTATTTAAAGTGACTGACTAATATTTCA
63 AAAAATTCAACTTAAAATCATTTATAAGATTATAAAAC-CTTTAAAGCGAGTAACTAGTATTTCA
* * * *
8403495 AAGCCATAAGTGACCATAAATAGACTTTTCTTG-CAAATGGAT-
127 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTC-AATGGATG
* ** ** * *
8403537 -TTTTTGCTTCATGTTT-TCTAATACAAACATCCAATCATGATA-TGTTTTAACAAACAATGAAA
1 GCTTTTGCTTCACATTTCTC-AAGGCAAACATCCAATTATGA-ACTATTTTAACAAA-AATG-AA
** *
8403599 AAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAATTGGGTAACTAGTATTTC
62 AAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGAGTAACTAGTATTTC
* * * * * *
8403664 GAAGGTATAAGTGAC-ACTAAATAGACATTTCTTATCAATGGATG
126 AAAGGCATGAGTGACTA-TAAATGGACTTTTCTTGTCAATGGATG
*** * * * * *
8403708 GCTTTCATTTCACATTTCTTAAGGCAAACATCCAATTATGATCTACTTTAACAAAGACTGAGAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAACAAA-AATGAAAAA
* * * * * * **
8403773 AAATTCAACTTAAAATCATTCATAAGATTATAAAACTATTTAAATCAACTAACTAATATTTCGGA
65 AAATTCAACTTAAAATCATTTATAAGATTATAAAAC-CTTTAAAGCGAGTAACTAGTATTTCAAA
** ** * * *
8403838 GGTGTGAGTGACTATAAATACATTTTTTTTATCAATGGATG
129 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* *
8403879 GCTTTTGCTTCACGTTTC-CTAAGGCAAACATCCAAGTATGAACTATTTTAACAAAAAATGAAAA
1 GCTTTTGCTTCACATTTCTC-AAGGCAAACATCCAATTATGAACTATTTTAAC-AAAAATGAAAA
* * *
8403943 AAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAACTAATTAGTATTTCAA
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGAGTAACTAGTATTTCAA
* * * *
8404008 AGGTATGAATGACTATAAATGGATTTTTCTTGTGAATGGAT-
128 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * * * * * *
8404049 GCTTTTCGCTTCAC-TATTCTCAAGACAAACAACAAATGATGATCTGTTTTAATAAAAAATG-AA
1 GCTTTT-GCTTCACAT-TTCTCAAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAAA
* * *
8404112 AAAAA-TCAAATTAAAATCATTTATAAGATTATAAAATCAC-TTAAAGTGAGTAACTAAG-GTTT
63 AAAAATTCAACTTAAAATCATTTATAAGATTATAAAA-C-CTTTAAAGCGAGTAACT-AGTATTT
* * * * *
8404174 CGAATGCATGAGTGAATATAAATAGACTTTTCTTAG-AAATGGATG
125 CAAAGGCATGAGTGACTATAAATGGACTTTTCTT-GTCAATGGATG
** * * * * * * * *
8404219 GCTTTCCCTTCGCGTTGC-CATGGGAAACA-CCTAATTATGATCTGTTTTAATGAAAAAT-AAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCC-AATTATGAACTATTTTAA-CAAAAATGAAAA
* * * * * * * ** *
8404281 TAAA-TAAATTTAAAATCATTTTTTAAG-TTTTAAAATCAC-TTAAGGCTAGTAACTAGGCTTCC
64 AAAATTCAACTTAAAATCA-TTTATAAGATTATAAAA-C-CTTTAAAGCGAGTAACTAGTATTTC
** * * * *
8404343 GTAGGCATAAGTGACTATAAATGGACATTTCTTATCAATGGATA
126 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * * *
8404387 GCTTTCGCTTCACATCTCCCCAA-GCAAAAATCCAATTATGAACTATTTTAACAAAAAATG-AAA
1 GCTTTTGCTTCACAT-TTCTCAAGGCAAACATCCAATTATGAACTATTTTAAC-AAAAATGAAAA
* * *
8404450 AAAA-TCAACTTAAAATCATTTATAAGACTATAAAACCATCTAAAGCGACTAACTAGTATTTCAA
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGAGTAACTAGTATTTCAA
* * *
8404514 AGGCATGAGTGACTATAAATGGACTTCTCTTGTCAATAGATA
128 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
** * * * * *
8404556 G-TTTTCGCTTCATGTTTC-CAGAGGCAAACATCCAAGTATAAACTGTTTTAACCAAAACTGCAA
1 GCTTTT-GCTTCACATTTCTCA-AGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAAA
* * * * *
8404619 AAGAATTCAACTTAAAATCATTTATATGATTAT-AAACCATTTAAAGCAACTAGCTAGTATTTCA
63 AAAAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGAGTAACTAGTATTTCA
*
8404683 AAGGCATGAGTGACTATAAATGGACTTTT-TT-TACTTATGGATG
127 AAGGCATGAGTGACTATAAATGGACTTTTCTTGT-C-AATGGATG
* * * * * * *
8404726 GCTTTTGCATGAAATTTCTCGAGGCAAACATCCAAGTATTAACTGTTTTAACCAAAAAT-AAAAG
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAAAA-
* * * * ** *
8404790 ACAATTCGAA-TTAAAATCATTTATAAGATTGTAGAACCATTTAAAGTGTCTAATTAGTATTTTC
64 AAAATTC-AACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGAGTAACTAGTA-TTTC
* * * *
8404854 AAACGCATGAGTGACTATAAATGGATTTTTCTTATCAATAGATG
126 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * * * * * * * * *
8404898 GCTTTCGCTTCAC-TTTTTCCAAGGTAAACAACAAATTATTATCTGTTTTAAGAAAAAGTAAAAA
1 GCTTTTGCTTCACATTTCT-CAAGGCAAACATCCAATTATGAACTATTTTAACAAAAA-T-GAAA
* * * *
8404962 AAAAACTCAATTTAAAATCATTTATAATATTATAAAATCAC-TTAAAGCGAGTAACTAAG-CTTT
63 AAAAATTCAACTTAAAATCATTTATAAGATTATAAAA-C-CTTTAAAGCGAGTAACT-AGTATTT
* * * * * *
8405025 CAAAAGTATAAGTGACTATAAATAGACTTTTCTT-ACATATGGATA
125 CAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA-ATGGATG
** * * * * * * * * *
8405070 GC-TTT-CCCCCCATTTTTCCTAAGGAAAACATCCAATCATGATCTGTTTGAATGAAAAAT-TAA
1 GCTTTTGCTTCACATTTCT-C-AAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAAA
* * * * ** **
8405132 AAAAA-TAAATTTTAAATCA-TTATTAA-ATTTAGAAAATCAC-TTAAAGTAAGTAACTAGGCTT
63 AAAAATTCAACTTAAAATCATTTA-TAAGA-TTATAAAA-C-CTTTAAAGCGAGTAACTAGTATT
** * * * *
8405193 TTTAAGACATGAGTGACTATAAATGCACATTTCTTATCAATGGATG
124 TCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * *
8405239 GCTTTTGCTTCAGATTT-TCCAAGGCAAACATCCAATTGTGAACTGTTTTAACTAAAAATGAAAA
1 GCTTTTGCTTCACATTTCT-CAAGGCAAACATCCAATTATGAACTATTTTAAC-AAAAATGAAAA
* *
8405303 AAAATTTCAACTTAAAATCATTTATAAGATTATAAAA-CTAGTTAAAGTGACTAACTAGTATTTC
64 AAAA-TTCAACTTAAAATCATTTATAAGATTATAAAACCT--TTAAAGCGAGTAACTAGTATTTC
* * * * * * * *
8405367 GAAGGTATGTGTGACCATAAATAGACTTTTCTTGTGAATGGTTT
126 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
** * * ** * *
8405411 ATTTTTGCTTC-C-TTTTTCCTGAGATAAACATCCAATTATGATCTATTTTAATAAAAAATG-AA
1 GCTTTTGCTTCACATTTCT-C-AAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAAA
* * **
8405473 TAAAATTCAACTTAAAATCATATATAAGATTATAAAA-CTATTGAAAGCGAGTAACTAGGCTTTC
63 AAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCT-TT-AAAGCGAGTAACTAGTATTTC
* * * * *
8405537 AAAGGCATGAATGGCTATAAATAGACTTTTGTTGTCATTGGATG
126 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * ** * * * * * *
8405581 GCTTTCGCCTCATGTTGCT-AGATGCAAACATCCAAGTATGATCTTTTTTAACGAAGAAT-AAAA
1 GCTTTTGCTTCACATTTCTCA-AGGCAAACATCCAATTATGAACTATTTTAAC-AAAAATGAAAA
* * * *
8405644 AAAATTCAACTTAAAACCATTTATAAGATTAGAAAACCATTTAAACCAGGGTAACTAGTATTTCA
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGC-GAGTAACTAGTATTTCA
* * * * * *
8405709 AAGGTATGAGTGACTATAAATAGTCTTTTCCTATTAATGGATG
127 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * * * *
8405752 GCTTTCGTTTCAC-TTTTTCTAAGGCAAACATCCAATTATGATCTATTTTAATAAAAACT-AAAA
1 GCTTTTGCTTCACATTTCTC-AAGGCAAACATCCAATTATGAACTATTTTAACAAAAA-TGAAAA
* * *
8405815 AAAATTCAACTTAAAATCATTTATAAGATTATAAAACCACTTAAAGTGAGTAATTAAGCT-TTT-
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGAGTAACT-AG-TATTTC
* * ** *
8405878 AAAGGCATTAATGACTATAAA-CAACCTTTTCTTGTCAATTGATG
126 AAAGGCATGAGTGACTATAAATGGA-CTTTTCTTGTCAATGGATG
** * *** * * * *
8405922 GCTTTCACTTCACGTTT-TCCAACATAAACATCAAATTATGATCTGTTTCAACAAAAAAT-AAAA
1 GCTTTTGCTTCACATTTCT-CAAGGCAAACATCCAATTATGAACTATTTTAAC-AAAAATGAAAA
* * * * * * ** *
8405985 AAAATT-AATTTGAAATCATTTTTAA-AGTTATAAAATCAC-TTAAGGTGAATAACTAGGCTTTT
64 AAAATTCAACTTAAAATCATTTATAAGA-TTATAAAA-C-CTTTAAAGCGAGTAACTAGTATTTC
* * * * *
8406047 GAAGGTATGAGTCACTATAAATGAACTTTT-TCTAT-AATTGGATG
126 AAAGGCATGAGTGACTATAAATGGACTTTTCT-TGTCAA-TGGATG
* ** * *
8406091 GTTTTTCGCTTCATGTTTC-CAAAGGCAAACATCCAATTATGATCTATTTTAACAAAAAAT-TAA
1 GCTTTT-GCTTCACATTTCTC-AAGGCAAACATCCAATTATGAACTATTTTAAC-AAAAATGAAA
* * **
8406154 AAAAA-TCAA-TCTACAATCATTTTTAA-AGTTATAAAATCAC-TTAAAGCGAGTAACTAGGCTT
63 AAAAATTCAACT-TAAAATCATTTATAAGA-TTATAAAA-C-CTTTAAAGCGAGTAACTAGTATT
* * * * *
8406215 TCGAAGGCATGAGTGGCTATAAATCGACTTTTCTTATCTATGGATG
124 TCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
** * * ** * *
8406261 GCTTTCACTTCTCATTTTTTTGAGGCAAACATCCAATTATGATCTTTTTTAACAAAAA--AAGAA
1 GCTTTTGCTTCACA-TTTCTCAAGGCAAACATCCAATTATGAACTATTTTAACAAAAATGAA-AA
* * * * **
8406324 ACAAATGT-AACTTAAAATTAGTTATAAGTTTATAAAACTTTTATAATGATTTTAAATGTAACTA
64 A-AAAT-TCAACTTAAAATCATTTATAAGATTATAAAACCTTTA-AA-G-----CGA-GTAACTA
** * * * * * * *
8406388 GGCTTTTAGAGGCTTCAAT-AGCTATAAAAGGACTTTTCTTGTCAATAGATG
119 GTATTTCAAAGGCATGAGTGA-CTATAAATGGACTTTTCTTGTCAATGGATG
* * ** * * * * *
8406439 GCTTTCAG-TTTATGTTTCTTAAGGTAAAAATCCAATTATGATA-TGTTTTAGCAAAAA--AAGA
1 GCTTT-TGCTTCACATTTCTCAAGGCAAACATCCAATTATGA-ACTATTTTAACAAAAATGAA-A
** * * * * * * * * * *
8406500 AAAGGTGCAATTTAAAATCAGTTATAAGTTTATAAAACCATGTAAATCGCGTAACTATTTTTTTG
63 AAAAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGAGTAACTA-GTATTTC
*
8406565 AAA-GCACGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
126 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * * * * *
8406608 GCTTTCGCTTCACATTT-TCGGAGGAAAACATCCAATTATGAACTGTATCAACCAAAAAT--AAA
1 GCTTTTGCTTCACATTTCTC-AAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAAAA
* * * * *
8406670 AAAATTCAAATTAAAATCATTTATAGGATTATAAAACTATTTAAAGCGACTAACTAGTATTTCGA
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAAC-CTTTAAAGCGAGTAACTAGTATTTCAA
* * * * * *
8406735 AGGCATGAGTAACCATAAGTAGACTTTTCTTCTGAATGGAT-
128 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
** ** * * * *
8406776 TATTTTCGCTTCATGTTT-TCTGAGACAAACAACCAATTATGAACTACTTTAACTAAAAATGAAA
1 GCTTTT-GCTTCACATTTCTC-AAGGCAAACATCCAATTATGAACTATTTTAAC-AAAAATG-AA
* * * * *
8406840 AAAAAATTCAAATTAAAATCATTAATAAGATTATAAAACTATTTAAAGCGACTAACTAGTATTTT
62 AAAAAATTCAACTTAAAATCATTTATAAGATTATAAAAC-CTTTAAAGCGAGTAACTAGTATTTC
* * * * *
8406905 AAAGGTATGAATGACTATAAATGGATTTTTCTTGTCGATGCATG
126 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * * * *
8406949 GCTTTCGCTACACTTTTCTCGAGGCAAACATCCAAGTATGAACTATTTTAACCAAAAATGAAAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAAAAA
* * * ** * *
8407014 GAATTCAACTTAAAATCATTTCTAAGATTATAAAACTATTTAAAGTAATTGACTAGTATTTCAAA
65 AAATTCAACTTAAAATCATTTATAAGATTATAAAAC-CTTTAAAGCGAGTAACTAGTATTTCAAA
* * * * * * *
8407079 GGCACGAGTTACAATAAATAGAGTTTTCTTGTGAATGAATG
129 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
** ** ** * * * *
8407120 ATTTTTGCTTCATTTTTCTTGAGGCAAACAACAAATTATGATCTATTTTAGCAAAAAAAT-AAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTA--ACAAAAATGAAAA
* * * * *
8407184 AAAATT-AATTTAAAATCATTTATAAGATTAT-AATCAC-TCAAAGCGAGTAACTA-AACATTCA
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAAC-CTTTAAAGCGAGTAACTAGTA-TTTCA
* * * * ***
8407245 AATGTATGAGTGACTATAAATGGACATTTATTAAAAATGGATG
127 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* ** * ** * * * * *
8407288 ACTTTTTTTTCACGTTTCTTGAGGCAAACATCCAATTATGATCTGTTTTAATAAAAAAGGAAAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAACAAAAATGAAAAAA
* * * * * ** * * *
8407353 TA-TAAATTTAAAATCATTTTTGACCTTATAAAATCAC-TTAAAGCAATTAACTAGTCTTTCAAA
66 AATTCAACTTAAAATCATTTATAAGATTATAAAA-C-CTTTAAAGCGAGTAACTAGTATTTCAAA
* * * *
8407416 GGTATGAGTGACAATAAATAGA-TATATCTTGTCAATGGATG
129 GGCATGAGTGACTATAAATGGACT-TTTCTTGTCAATGGATG
* * * * * *
8407457 GCTTTTGCTTCACATTTCTCGAGGCAAGCA-CCAAACTATGAATTGTTTTAACTAAGAATGAAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCC-AATTATGAACTATTTTAAC-AAAAATGAAAA
** * * * * * * *
8407521 TTAATTGAACTTAAAATCATTTATAAGATTATAAAACCATTTCAAGGGATTAATTGGTATTTCGA
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGAGTAACTAGTATTTCAA
* * * * *
8407586 AGGCATGAGTGACTATAAACGAACTTTTATTGTGAATGGATT
128 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
** * * * * *
8407628 ATTTTTGCTTCACGTTTCTCAAGACAAACATCCAATTATGATCTATTTTAATAAAAAAT-AAATA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAAAAA
* * ** **
8407692 AAATTCAGCTTAAAATCATTTATAAGATTAT-AAA-CTATTGAAAGGGAGTAACTAGGCTTTTGA
65 AAATTCAACTTAAAATCATTTATAAGATTATAAAACCT-TT-AAAGCGAGTAACTAGTATTTCAA
* * *
8407755 AGGCATGAATGGCTATAAATGGACTTTTCTTATCAATGGATG
128 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * ** ** * ** * * * *
8407797 GCTTTTGCCTGATGTTTCTTGATGCAAACATTTAGTTATGATCTGTTTTAATAAAAAATG-AAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAAAAA
* * * ** * * *
8407861 ACATTCAACCTAAAATTATGAATAAGATTAGAAAATCATTTAAATCAGAGTAACTAGTATTTCAA
65 AAATTCAACTTAAAATCATTTATAAGATTATAAAA-CCTTTAAAGC-GAGTAACTAGTATTTCAA
* ** * * *
8407926 AGGCATGAATGACTATAAATTAATTTTTCTTTTAAATGGATG
128 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * * *
8407968 GCTTTTGCTTTA-TTGTTC-CAAAGGAAAACA-CCTAATTATGATCTATTTTAACAAAAGATG-A
1 GCTTTTGCTTCACAT-TTCTC-AAGGCAAACATCC-AATTATGAACTATTTTAACAAAA-ATGAA
* * * * * * **
8408029 AAAAATTTCAACTTAAAATTATTTATAAAATTATAAAA-CTACTTAAAGCAAGCAATTAGGCTTT
62 AAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCT--TTAAAGCGAGTAACTAGTATTT
* * * * *
8408093 CGAAGGTATGAATGACTATAAAT-GACCATTTTC-TATCAATAGATG
125 CAAAGGCATGAGTGACTATAAATGGA-C-TTTTCTTGTCAATGGATG
** * * * * * *
8408138 GCTTTCCCTTTACGTTT-TCCAATGTAAAAATCCACTTATG-A-TATGTTTCAACAAAAAAATGA
1 GCTTTTGCTTCACATTTCT-CAAGGCAAACATCCAATTATGAACTAT-TTT-AAC--AAAAATGA
* * * * ** ** **
8408200 AAAAATA-TCAATTTAAAAGCATTTTTAA-ACTTATAAAATCAC-TTAGGGTAAGTAACTAGGCT
61 AAAAAAATTCAACTTAAAATCATTTATAAGA-TTATAAAA-C-CTTTAAAGCGAGTAACTAGTAT
* ** * **
8408262 TTCGACCGCATGAGTCACTATAAATGGACTTTTGC--AACAAATGGATG
123 TTCAAAGGCATGAGTGACTATAAATGGACTTTT-CTTGTC-AATGGATG
* * ** * * * *
8408309 GCTATTGC-TCTACGTTTCTTGATGCAAACATCCAATTATGATCTGTTTTAACAAAAAAAGAAAA
1 GCTTTTGCTTC-ACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAAC-AAAAATGAAAA
* * * * *
8408373 AGAAATGCAACTTAAAATCAGTTATAAGTTTATAAAACCATTTAAATC-AGGTAACTATTATTTC
64 A-AAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGA-GTAACTAGTATTTC
* * * * * *
8408437 GAAGTCGTGAATGACTATAAATAGACTTTCCTTGTCAATGGAT-
126 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * *** * * *
8408480 -CATTTTCACTTCACGTTTCTGGTGGAAAACATCCAATTATGAAC-AGTTTTAACTGAAAATAAA
1 GC-TTTT-GCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTA-TTTTAAC-AAAAAT-GA
* * * * * *
8408543 AAAAAAATTCAAATTCAAATAATTTATAAGATTATAAAACCATTTTAAGAGACTAACTAGTATTT
61 AAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGAGTAACTAGTATTT
* *
8408608 AAAAGGCATGAGTGACTGTAAATGGACTTTTCTTGTCAATGGATG
125 CAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
** * ** * * *
8408653 GCTTTCACTACATGTTTCTCAAGGAAAACATCCAAGTATGAAGTATTTTAACCAAAAATGAAAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATG-AAAA
* * * * * * *
8408718 AAAATT-AATTTAAAATAATTTTTAAGATTATATAACTATTTAAAGAC-ACTGACTAGTATTTCA
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAAC-CTTTAAAG-CGAGTAACTAGTATTTCA
* *
8408781 AAGGCATGAGTGACTATAAATGGACTTTTTTTGTGAATGGATG
127 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * ** * * *
8408824 G-TTTTAGTTTCACTTTTCTTGAGGCAAACAACAAATTATGATA-TATTTTAGCAAAAA--AATA
1 GCTTTT-GCTTCACATTTCTCAAGGCAAACATCCAATTATGA-ACTATTTTAACAAAAATGAA-A
* * * * *
8408885 AAAAAATCAATTTAAAATCATTTATAAGAATATAAAATCAC-TTAAAGCAAGTAACTAAG-CTTT
63 AAAAATTCAACTTAAAATCATTTATAAGATTATAAAA-C-CTTTAAAGCGAGTAACT-AGTATTT
* * *
8408948 CAAAGGCATGAGTGACTATAAATAGACTTTTCTTATAAATGGATG
125 CAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* ** ** * *
8408993 TCTTTCCCTTCATGTATCCCAAGGCAAA-ATCCAATTATG----A---TAACAAAAACT-AAAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAACAAAAA-TGAAAAA
* * * * ** * **
8409049 AAA-TAAATTTAAAGTCATTT-T-TGATGCTATAAAATCAC-TTAAAGTAAGCAACTAGGCTTTC
65 AAATTCAACTTAAAATCATTTATAAGAT--TATAAAA-C-CTTTAAAGCGAGTAACTAGTATTTC
*
8409110 GAAAGTG--TGAGTGACTATAAATGGA-TATTTCTTATCAATGGATG
126 -AAAG-GCATGAGTGACTATAAATGGACT-TTTCTTGTCAATGGATG
* * * * * * *
8409154 GCTTTTACTTCACATCTCT-AGAGGCAAACATCAAAGTATGAATTGTTTTAACCAAGAATGAAAA
1 GCTTTTGCTTCACATTTCTCA-AGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAAAA
* * * * * * * * * **
8409218 AAAATTCAACTTCAAATCATTTCTATGATTATAAAACTATTTCAAGGGACTAATTAGTGTTTCGT
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAAC-CTTTAAAGCGAGTAACTAGTATTTCAA
* * * * *
8409283 AGGCATGAGTGACCATAAATGGACATTTATTGTGAATGGATT
128 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
** ** * *
8409325 ATTTTTGCTTCATGTTTCTCAAGACAAACATCCAATTATGATCTATTTTAACAAGAAATG-AAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAACAA-AAATGAAAAA
** ** *
8409389 AAATTCAGGTTAAAATCATTTATAAGATTAT-AAA-CTATTGAAAGCGAGTAACTAGGCTTCCAA
65 AAATTCAACTTAAAATCATTTATAAGATTATAAAACCT-TT-AAAGCGAGTAACTAGTATTTCAA
* * *
8409452 AGGCATGAAT-AGCTATAAATCGACTTTTCTTATCAATGGATG
128 AGGCATGAGTGA-CTATAAATGGACTTTTCTTGTCAATGGATG
* * ** * * * * *
8409494 GCTTTTGCCTAATGTTTC-CTGATGCAAATATTCAATTATGATCTATTTTAACAAAGAATG-AAA
1 GCTTTTGCTTCACATTTCTC-AAGGCAAACATCCAATTATGAACTATTTTAACAAA-AATGAAAA
* * *
8409557 AAAATTCAACTTAAAATCATTTATAAGATTAGAAAACCATTTAAATCGGGGTAACTAGTATTTCA
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGC-GAGTAACTAGTATTTCA
* ** * *
8409622 AAGGCATGAATGACTATAAATTAACTTTTCTTATAAATGGATGG
127 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT-G
* * * * * * *
8409666 GC-TTTGCTTTAC-TTTTTCAAAAGCAAACACCCAATTGTGATCTATTTTAATAAAAAATGAAAA
1 GCTTTTGCTTCACATTTCTC-AAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAAAA
** * * * ** * * **
8409729 ACTATTCAACTTAAAATCATTTATAAAATTATAAATCCGCTTAAAGTAAGCAATTAGGCTTTCAA
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGAGTAACTAGTATTTCAA
* * * *
8409794 AGGCATGAATGCCTATAAAT-GACCTTTTCTTGTTAATAGATG
128 AGGCATGAGTGACTATAAATGGA-CTTTTCTTGTCAATGGATG
** * * * * * *
8409836 G-TTTTCGCTTTGCGTTT-TCCAATGTATAA-ATCAAATCATG-A-TATGTTTCAATAAAAAATG
1 GCTTTT-GCTTCACATTTCT-CAAGGCA-AACATCCAATTATGAACTAT-TTT-AA-CAAAAATG
* * * * * * ** * **
8409896 AAAAAAAAATCAATTTGAAATCATTTTTAA-ACTTATAAAATCAC-TTCAGGTAAATAACTAGGC
60 AAAAAAAATTCAACTTAAAATCATTTATAAGA-TTATAAAA-C-CTTTAAAGCGAGTAACTAGTA
*
8409959 TTTCAAAGGCATGAGTCACTATAAATGGAC--TT-TTGTACAAATGGATG
122 TTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGT-C-AATGGATG
* * * *
8410006 GCTTTTGCCTT-ACATTTCTTAAGGTAAACATCCAATTATGATCTATTCTAAC----A--AAAAA
1 GCTTTTG-CTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAACAAAAATGAAAAA
* * * ** ** ** * * * * *
8410064 AAATGCAACTT-AAATCAGTTCTAATTTTATAAAAGAATTTAAATTGGGCAACTATTATTTTGAC
65 AAATTCAACTTAAAATCATTTATAAGATTATAAAA-CCTTTAAAGCGAGTAACTAGTA-TTTCAA
8410128 AGTG--TGAGTGACTATAAATGGACTCTTT-TTGTCAATGGAT-
128 AG-GCATGAGTGACTATAAATGGACT-TTTCTTGTCAATGGATG
* * * *** * * *
8410168 -CATTTTCACTTCACGTTTTTGGGGGAAAACATCCAGTTATGAAC-AGTTTTAACCAAAAA-CAA
1 GC-TTTT-GCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTA-TTTTAA-CAAAAATGAA
* * ** * * *
8410230 AAAAAA-TCAAATTAAAATCATTTATAACATTATAAAAAGATTTAAAGCGACTGACTATTATTTC
62 AAAAAATTCAACTTAAAATCATTTATAAGATTAT-AAAACCTTTAAAGCGAGTAACTAGTATTTC
* *
8410294 AAAGGCATGAGTGACTGTAAATGGATTTTTCTTGTCAATGGATG
126 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * ** ** * *
8410338 ACTTTCGCTTCATGTTTCTGGAGGAAAACATCCAAGTATGAACTATTTTAACCAAAAATGAAAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAAAAA
* * * * *
8410403 GAATTCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGTGAGTAATTAGTATTTCGAA
65 AAATTCAACTTAAAATCATTTATAAGATTATAAAA-CCTTTAAAGCGAGTAACTAGTATTTCAAA
* * * * *
8410468 GGCATAAGTGACTATAAATGGACCTTTT-TTATAAAAGGATA
129 GGCATGAGTGACTATAAATGGA-CTTTTCTTGTCAATGGATG
* ** * * * *
8410509 G-TTTTCGCTTCAC-TCTTTTTTAGGCAAA-AACAAATTATGATCTGTTTTAGTA-AAAAATG-A
1 GCTTTT-GCTTCACAT-TTCTCAAGGCAAACATCCAATTATGAACTATTTTA--ACAAAAATGAA
* * * ** * *
8410569 AAAAAA-TCAATTTCAAATCATTTATAAGATTATAAAATCAC-CTAAATTGAATAACTAAG-CTT
62 AAAAAATTCAACTTAAAATCATTTATAAGATTATAAAA-C-CTTTAAAGCGAGTAACT-AGTATT
* *
8410631 TCGAAGGCATGAGTGACTATAAATGGACTTTTCTTAG-AAATGGATG
124 TCAAAGGCATGAGTGACTATAAATGGACTTTTCTT-GTCAATGGATG
** * * * * * *
8410677 GCTTTCCCTTCACATTT-TCTAAAGTAAATATCCAATTATGATCTGTTTTAATAAAAAAT-AAAA
1 GCTTTTGCTTCACATTTCTC-AAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAAAA
* * * * * * * *
8410740 AAAA-TAAATTTAAAATCATTTTTGACATTATGAAATCAC-TTAAAGCAAGTAAATAGGCT-TTT
64 AAAATTCAACTTAAAATCATTTATAAGATTAT-AAAAC-CTTTAAAGCGAGTAACTA-G-TATTT
* * *
8410802 GAAA-GTATGAGTGACTATAAATGGACATTTCTTGTCAATGGATG
125 CAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * * * * *
8410846 GCTTTCGCTACACATTTC-CTGAGACAAACATCCAGTTATGAACTGTTTTAACAAAAAAT-AAAA
1 GCTTTTGCTTCACATTTCTC-AAGGCAAACATCCAATTATGAACTATTTTAAC-AAAAATGAAAA
* * * **
8410909 AAAATTCAACTTAAAATCATTTATAAGATTA-ACAAACTATTTAAAGCGATTAACAAGTATTTTG
64 AAAATTCAACTTAAAATCATTTATAAGATTATA-AAAC-CTTTAAAGCGAGTAACTAGTATTTCA
* * *
8410973 AAGGCATCAGTGACCATAAATGGACTTTTCTTGTGAATGGAT-
127 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
** * * * * *
8411015 TATTTTGCCTTCATA-TTCCCAATGCAAACATCCAATTATGATCTACTTTAACAAAAAAT-AAAA
1 GCTTTTG-CTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAAC-AAAAATGAAAA
* * * *
8411078 AAAAATCAACTTAAAATCATTTATAAGATTATAAAACCATTAAAATC-AGGTAACTAGTATTTCG
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGA-GTAACTAGTATTTCA
** * *
8411142 AAGGCATGAGTGA-TAATAAATAAAATTTTCATGTCAATGGATG
127 AAGGCATGAGTGACT-ATAAATGGACTTTTCTTGTCAATGGATG
** * * * * * **
8411185 GCTTTCACTTTACGTTTCTTAAGGCAAATATCCAATTACG-A-TATGCTTT-A-ATGAA-GAAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTAT--TTTAACAAAAATGAAAA
** * *
8411245 AAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAA-TTATTTAACTAGCATTTCA
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGA-GTAACTAGTATTTCA
* * * * * *
8411309 AAAGCTTAAGT-ACTATAAATGGATTTTTCTTATCAATGGATA
127 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* ** * * * * *
8411351 GCTTTCGCTTCATGTTTC-CTAAGGCAAACATTCAAGTATGAATTGTTTTAACCAAAAATGAAGA
1 GCTTTTGCTTCACATTTCTC-AAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAAAA
** ** * * * *
8411415 GGAATTCAACTTAAAATCATTTATAAGGCTACAAAACTATTTAAAGTGA-TAAATTAGTATTTCA
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAAC-CTTTAAAGCGAGT-AACTAGTATTTCA
* * *
8411479 AAGGCATGAGTGATTATAAAT-GAGCTTTTTCTTGTGAATGGATA
127 AAGGCATGAGTGACTATAAATGGA-C-TTTTCTTGTCAATGGATG
* * * * * * *
8411523 G-TTTTCACTTCACTTTTCTCAAGGCAAACAACAAATTATGATCTGTTTTAAGAAAAAT-AAAAT
1 GCTTTT-GCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAACAAAAATGAAAA-
* * *
8411586 AAAA-TCAATTTAAAATCATTTATAAGATTATAAAATCAC-TCAAAGCGAGTAACTAAG-CTTTC
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAA-C-CTTTAAAGCGAGTAACT-AGTATTTC
* * * * * *
8411648 GAAGGGATGAGTGATTATAAATAGACTTTTCTT-ACAAATGAATG
126 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC-AATGGATG
** * * **
8411692 GCTTTCCCTTCACATTTCTCAGGGCAAACATCCAATTATGATCTATTTTGATGAAAAATG-AAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTT-AACAAAAATGAAAAA
* * * ** **
8411756 AAATAC-ATTTAAAATCATTTTTAA-AGTTATAAAATCAC-TTAAAGTAAGTAACTAGGCTTTCA
65 AAATTCAACTTAAAATCATTTATAAGA-TTATAAAA-C-CTTTAAAGCGAGTAACTAGTATTTCA
* * * *
8411818 AAGGTATGAGTGACTATAAATGGAAATTTT-TTATCAATAGATG
127 AAGGCATGAGTGACTATAAATGG-ACTTTTCTTGTCAATGGATG
* *
8411861 GCTTTTGCTTCACATTTCTTGAA-GCAAACATCCAATTATGAGCTATTTTAACTAAAAATGAAAA
1 GCTTTTGCTTCACATTTC-TCAAGGCAAACATCCAATTATGAACTATTTTAAC-AAAAATGAAAA
* * * * *
8411925 ACAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGACTAATTGGTATTTCAA
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGAGTAACTAGTATTTCAA
*
8411990 AGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATG
128 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * * * * * * * * *
8412032 GCTTTCGCTTCGCGTTTC-CTGAGCCAAACATCCAAGTATGAATTGTTTTAATGAAAAGTGAAAA
1 GCTTTTGCTTCACATTTCTC-AAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAAAA
* * * * * *
8412096 AGAATTCAACTTAAAATCATTTATAACATTATAAAATCATTTAAAGTGACTAATTAGTATTTCAA
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAA-CCTTTAAAGCGAGTAACTAGTATTTCAA
* * * * *
8412161 AGGCATGAGTGACTATAAATTGAATTTTCTTATGAATGCAT-
128 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* ** * * * *
8412202 GCTTTT-CATTTAACATTTCTTGAGGCAAACAACAAATTATGATCTGTTTTAA-AAAATATGAAA
1 GCTTTTGC--TTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAACAAAA-ATGAAA
* * *
8412265 AAAAATTCAATTTGAAATCATTTATAAGATTATAAAATCAC-TTAAAGCGAGTAACTA-AACTTT
63 AAAAATTCAACTTAAAATCATTTATAAGATTATAAAA-C-CTTTAAAGCGAGTAACTAGTA-TTT
** * *
8412328 CAAAGATATGAGTGACTATAAATGGACTTTTCTTATAAATGGATG
125 CAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * * * ** * ** *
8412373 GCTTTTCCTTTACGTTTC-CTGAGATAAACATTCAATTATGATTTGA-TTTAATGAAAAAT-AAA
1 GCTTTTGCTTCACATTTCTC-AAGGCAAACATCCAATTATGAACT-ATTTTAA-CAAAAATGAAA
* * * * *
8412435 AAAAA-TAAATTTAAAATCATTTTTAA-AGTTATAAAATCAC-TTAAAGCAAGTAACTAAG-CTT
63 AAAAATTCAACTTAAAATCATTTATAAGA-TTATAAAA-C-CTTTAAAGCGAGTAACT-AGTATT
* * *
8412496 TCGAAGGTATGAGTGACTATAAATGGACATTTCTTGTCAATGGAT-
124 TCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * * *
8412541 GCTTTT-TTTCACATTT-TCCATGACAAACATCCAATTATGAA-TCATTTTAAGCCAAAAT-AAA
1 GCTTTTGCTTCACATTTCT-CAAGGCAAACATCCAATTATGAACT-ATTTTAA-CAAAAATGAAA
* * * * * *
8412602 AAAAATTTCAACTTCAAATTATTTATAAGATTATAAAACCACTTAAAGCGACTTACTAGTATTTT
63 AAAAA-TTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGAGTAACTAGTATTTC
* * * * * *
8412667 TAAGGCATAAATGACTATAAATAGACTTTTTTTATCAATGGATG
126 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
** * * *
8412711 GCTTTTGCTTCATGTTTCGCAAGGCAAACATCCAAGTATGAACTAGTTTAATCAAAAATGAGAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGA-AAA
* * * * ** * * *
8412776 GAATTTC-ACCTAAAATCATTTATAAGATTATAAAACCAATTAAAGTAACTAATTAGTATTTCGA
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGAGTAACTAGTATTTCAA
* * *
8412840 AGGCATGGGTGACTATAAATGGACTTTTCTTGTGAATGG-TA
128 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
** * * * * ** *
8412881 ATTTTTGCTTCACTTTTCTCTAGGAAAACAAT-AAATTATGATTTGTTTTAACAAAAAATGAAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAAC-ATCCAATTATGAACTATTTTAAC-AAAAATGAAAA
** * * ** * * *
8412945 GAAAAGCCAATTTGAAATCATTTATAAGATTATAAAATTGTTTAAAGTGAGTGACTAAG-CTTTC
64 -AAAATTCAACTTAAAATCATTTATAAGATTATAAAA-CCTTTAAAGCGAGTAACT-AGTATTTC
* * *
8413009 GAAGGCATGAGTGACTATAAATGGACTTTTCCT-ACAAATGGATG
126 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC-AATGGATG
** * * * * *
8413053 GCTTTCCCTTCATATTGCCCAAGGCAAACATCCAATTATGACCTATTTTAATAAAAAAT-AAAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAAAAA
* * * * * * * ** *
8413117 AAA-TAAATTTAAAATCA-TTATTAGAGTTAGAAAATCAC-TTAAAGCAAATAATTAGGCTTTTA
65 AAATTCAACTTAAAATCATTTATAAGA-TTATAAAA-C-CTTTAAAGCGAGTAACTAGTATTTCA
*
8413179 AAGGCATGAGTGACTATAAATGGA-TATTTCTTGTTAATGGATG
127 AAGGCATGAGTGACTATAAATGGACT-TTTCTTGTCAATGGATG
* ** * * *
8413222 ACTTTTGCTTCACATTTCTTTGAGCCAAACATCCAATTATGAACTGTGTTAACTAAAAATGAAAG
1 GCTTTTGCTTCACATTTC-TCAAGGCAAACATCCAATTATGAACTATTTTAAC-AAAAATGAAA-
* * * *
8413287 AAAAA--CAAATTAAAATCATTT-TAAGATTATAAAACCATTTAAACCAACTAACTAGTATCTT-
63 AAAAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGAGTAACTAGTAT-TTC
* * * * * *
8413348 GAATGCATGAGTGATTGTAAATGGACCTTTCTTGTCAACGGATG
126 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * * ** * * *
8413392 ACTTTCGCTTTATGTTT-TCTGAGGGAAACATCCAATTATGATA-TGTTTTAACAAAAAATG-AA
1 GCTTTTGCTTCACATTTCTC-AAGGCAAACATCCAATTATGA-ACTATTTTAAC-AAAAATGAAA
* * * * * **
8413454 AAAAACTAAATTTAAAATCATTTTTAA-AGTTATAAAATCAC-TTAAAGCAAGTAACTAGGCTTT
63 AAAAATTCAACTTAAAATCATTTATAAGA-TTATAAAA-C-CTTTAAAGCGAGTAACTAGTATTT
* * * * * * **
8413517 TAAAGGTATGAGTGATTATAAATGAACATTTCTTGCCAACAGATG
125 CAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * ** * * *
8413562 GCTTTCGCTTTACATTTC-CTAAGGCAAACATCTGATTATGATA-TGTTTTAACCAAAATTCAAA
1 GCTTTTGCTTCACATTTCTC-AAGGCAAACATCCAATTATGA-ACTATTTTAA-CAAAAATGAAA
* * * * * *
8413625 AAGAATTCAACTTAAAATCATTTATAAGATTATAAAACTATTTAAATCAAGTAAATAGTATTTCG
63 AAAAATTCAACTTAAAATCATTTATAAGATTATAAAAC-CTTTAAAGCGAGTAACTAGTATTTCA
*
8413690 AAGGCATGAGTGA-TAATAAATGGACTTTTCTTGTCAATGGATA
127 AAGGCATGAGTGACT-ATAAATGGACTTTTCTTGTCAATGGATG
* * * * * * *
8413733 GCATTTGCTTCACTTTTCTCCAA-GTAAACATTCAATTATAAATTGTTTTAACTAAAAAT---AA
1 GCTTTTGCTTCACATTTCT-CAAGGCAAACATCCAATTATGAACTATTTTAAC-AAAAATGAAAA
* * *
8413794 AAAA---AA-TTAAAATCATTTATAAGATTATAAAATCATTTTAAGCGACTAACTAGTATTTCAA
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAA-CCTTTAAAGCGAGTAACTAGTATTTCAA
* * * * * **
8413855 ATGTATGAATGATTATAAATGGACTTTTCTTATCAGCGGATG
128 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* ** ** * * * *
8413897 GCTTTCGCTTCACATTT-TCTAAGGCAAACATTTAATTATGATGTGTATTAATGAAAAAT-TAAA
1 GCTTTTGCTTCACATTTCTC-AAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAAAA
* * **
8413960 AAAATTCAACTTAAAATCATTTATAAGATTATAAAA-CTATTGAAAGCAAGCAACTAGGCTTTCA
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAACCT-TT-AAAGCGAGTAACTAGTATTTCA
** *
8414024 AAGTTATGAATGGA-TATAAATGGACTTTTCTTGTCAATGGATG
127 AAGGCATGAGT-GACTATAAATGGACTTTTCTTGTCAATGGATG
*** * * * *
8414067 GCTTTCATTTTACGTTTCTCAAGGCAAACATCCAATTATGATCTATTTTAACAAACAAAG-AAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAACAAA-AATGAAAAA
* * * * * **
8414131 AAATGCAATTTAAAATC-TGTTATAAGTTTATAAAACCATTTAAATC-AGGTAACTATTATTTTG
65 AAATTCAACTTAAAATCAT-TTATAAGATTATAAAACC-TTTAAAGCGA-GTAACTAGTATTTCA
* ** * * ***
8414194 AAGGCATGAATGACTATAAATTAACCTTTCTTGTTAACAAATG
127 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
** ** * *
8414237 GCTTTCACTTCATGTTT-TCAGAGGCAAACATCTAATTATGAACTGTTTTAACCAAAAATGAAAA
1 GCTTTTGCTTCACATTTCTCA-AGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAAAA
* * * * *
8414301 AACAATTCAAGTCAAAATCATTTATAAGATTATAAAACCATTTAAAGCGACTAAGTAGTATTTTA
64 AA-AATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGAGTAACTAGTATTTCA
* * *
8414366 AA-GCATGAGTAACTATAAATAGAGC-TTTCTTGTCAATGAATG
127 AAGGCATGAGTGACTATAAATGGA-CTTTTCTTGTCAATGGATG
* * ** * * * **
8414408 GCTTTCGTTTCATGTTTCTCAAGGTAAATATCCAATTATGATA-TGTTTTAATGAAAATGGAAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGA-ACTATTTTAACAAAAAT-GAAAA
* * **
8414472 AAAA-T-AAATTCAAAATCACTTT-TAA-AGTTATAAAATCAC-TTAAAGCAAGTAACTAGGCTT
64 AAAATTCAACTT-AAAATCA-TTTATAAGA-TTATAAAA-C-CTTTAAAGCGAGTAACTAGTATT
* * * *
8414532 TCGAAGGCATGA-TGACTATAAATGGACATTTCTTGTTAACGGATG
124 TCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
*** * *
8414577 GCTTCCACTTCACATTTCT-AGAGGCAAACATCCAATTATGAACTATTTTATCCAAAAATAAAAA
1 GCTTTTGCTTCACATTTCTCA-AGGCAAACATCCAATTATGAACTATTTTA-ACAAAAAT-GAAA
* * * * * *
8414641 AAAAACTCAACTTAAAATCACTTATAAGATTATAAAACCATTTTAATCGTGTAATTAGTATTTCA
63 AAAAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGAGTAACTAGTATTTCA
* * * * *
8414706 AAGGCATGAGTGACAAGAAATAGACTTTT-TT-TTAATGAATG
127 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * * * * * * ** *
8414747 GTTTTTGCTTCACGTCTCTCAAGGTAACCATCAAATTATGATCTGA-TTTAGGGAAGAATGAAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACT-ATTTTA-ACAAAAATGAAAA
* * * * * **
8414811 AAGATTCAACTTAAAAGCATTTATAAGATTATAAAACTATTTAAATCAAGTAACTAGTATTTCGG
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAAC-CTTTAAAGCGAGTAACTAGTATTTCAA
* *
8414876 AGGCATGAGTGACTATAAATGGACTTTTTTTGTCAATAGATG
128 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* ** * * * * *
8414918 GCTTTTGCTTTATGTTTC-CTATGGCGAACATCCAAGTATGAACTGTTTTAATAGAAAATGAAAA
1 GCTTTTGCTTCACATTTCTC-AAGGCAAACATCCAATTATGAACTATTTTAACA-AAAATGAAAA
* * * * *
8414982 AGAATTCAACTTAAAATCATTTATAAAATTATAAAACCATTTAAAGCGACTGA-TATGTGTTTCA
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGAGTAACTA-GTATTTCA
* * * *
8415046 AAGGCATGAGTAACTTTAAATAGACTTTTCTTGTGAATGGATG
127 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * * * * * * * *
8415089 GCTTTCGCTTGC-CTTTTCCCGAGGTAAACAAT-AAATTATGATCTAATTTAACAAAAAATAAAA
1 GCTTTTGCTT-CACATTTCTCAAGGCAAAC-ATCCAATTATGAACTATTTTAAC-AAAAATGAAA
* * *
8415152 AAAAAATCAA-TTCAAAATCATTTACAAGATTATAAAATCAC-TTAAAGCGAGTAACTAAG-CTT
63 AAAAATTCAACTT-AAAATCATTTATAAGATTATAAAA-C-CTTTAAAGCGAGTAACT-AGTATT
* * * * * * *
8415214 TCAAATGTAAGAGTGACTATAAATAGACTTTTCCT-ACATATGGATA
124 TCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA-ATGGATG
* * * * *** * ** ** * *
8415260 GCTTTTCCTCTATATGGATAGCTTTTC-CTCCACATTTCTCAAGGA-AAAC-ATCCAATTAGGAT
1 GCTTTTGCT-T-CA--CAT---TTCTCAAGGCAAACATC-CAATTATGAACTAT---TTTA--A-
** *** * * * ** * ** * * *
8415322 TTATTTTCAAGAGAAATGGAAACAATAAATTTAAAATTATTTTTAAAGTTATAAAATCAC-TTAA
52 CAAAAATGAAAAAAAAT-TCAAC-TTAAA---ATCA-T-TTATAAGA-TTATAAAA-C-CTTTAA
* * * * * * * * * *
8415386 CGCAAGTAGCTA-TGCTTTCAAAGGTATGAGTGACAATAAATAGCCATTTCTTGTCAATTGATG
107 AGCGAGTAACTAGT-ATTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * * **
8415449 GCTTTCGTTTCACATTTCTCAAGGCAAACATCCAATTATGAATTGCTTTAACAAAAAATGAAAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAAC-AAAAATG-AAAA
* * * * * * * *
8415514 AAAATT-AACTTATAATCATTTACAAAATTATAAAGCCATGTAAATCGGGTAACTAGTATTTCGA
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGAGTAACTAGTATTTCAA
* * * * *
8415578 AGGCATGAATGACAATAAATGGAATTTT-TCTATCAATGGATT
128 AGGCATGAGTGACTATAAATGGACTTTTCT-TGTCAATGGATG
** * * * * *
8415620 GCTTTCACTTCATATTTCTCTAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGATAAC
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAAC-AAAAATGA-AAA
* * * * **
8415685 AAAATTCAACTCAAAATCATTTATAAAATTATAAAACCATTTAAATCGGGTAACTAGTATTTTGA
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGAGTAACTAGTATTTCAA
* * * *
8415750 AGGCATGGGTGACAAGAAATGGACTTTTCTTGTCAATTGATG
128 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * * * * * ** * ** *
8415792 GCTTTTGCTTCTCATCTCTCGAGGCAAACACCCAATTAAGATCTACGTTAATGAGGAATGAGAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAAAAA
* * * * * **
8415857 AAATTCAATTTAAAACCATTTGTAGGATTATAAAACCATTTAAATC-AGGTAACTAGTATTTTGA
65 AAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGA-GTAACTAGTATTTCAA
* * * * *
8415921 TGGTATGAGTGACCATATATGAACTTTTCTTGTCAATGGATG
128 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
** * * * ** * * * *
8415963 GCTTTCACTTCACGTTGTCT-GAGCCAAATGTCCAATTA-CAAGCTGTTTTAATAAAACT--AAA
1 GCTTTTGCTTCACATT-TCTCAAGGCAAACATCCAATTATGAA-CTATTTTAACAAAAATGAAAA
* * ** * *
8416024 AAAA---AACTTAAAATTATTTATAAAATTATAAAAGTATTTCAAA-CGACTAACTAGTATTTCG
64 AAAATTCAACTTAAAATCATTTATAAGATTATAAAA-CCTTT-AAAGCGAGTAACTAGTATTTCA
* * *
8416085 AAGACATGAGTGGCTATAAATGGACTTTTCTTGT-AATGAATG
127 AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
** * ** ** * * * *
8416127 GCTTTCACTTTATGTTT-TCGAAGGTGAACATCAAAGTACGAACTGTTTTAACCAAAAAT-AAAA
1 GCTTTTGCTTCACATTTCTC-AAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAAAA
* * * *
8416190 AATAATTCAACTTAAAATTATTTATAA-AGTTATACAACCATTTAAAGCGACTAA-TAAGTGTTT
64 AA-AATTCAACTTAAAATCATTTATAAGA-TTATAAAACC-TTTAAAGCGAGTAACT-AGTATTT
* * * *
8416253 CGAAGGCATGAGTAACTTTAAATGGACTTTTCTTGTGAATGGATG
125 CAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * * * * * * *
8416298 G-TTTTAACATC-CTTTTCCCAAGGCAAACAACAAATTTTGATA-TGTTTTAACCAAAAAT-AAA
1 GCTTTT-GCTTCACATTTCTCAAGGCAAACATCCAATTATGA-ACTATTTTAA-CAAAAATGAAA
* * *
8416359 AAAAA-TCAATTTAAAATCATTTATAAGATTATAAAATCAC-TTAAAGTGAGTAACTAAG-CTTT
63 AAAAATTCAACTTAAAATCATTTATAAGATTATAAAA-C-CTTTAAAGCGAGTAACT-AGTATTT
* * * * * * * *
8416421 CGAATGC-TGGAGTGACTATAAATGAATTTTTCTTATAAATGGCTA
125 CAAAGGCAT-GAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* ** * ** * * * * *
8416466 ACTTTCCCTTCACGTTTCAT-AAGAAAAACATCCAATTAGGATCTGTTTTAATGAAAAAT--TAA
1 GCTTTTGCTTCACATTTC-TCAAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAAAA
** * * * * ** * ** *
8416528 AAAGCTAAATTTAAAATTATTTTTAA-AGTTATAAAATCAC-TTAAAGAAAGTAGCTAGGCTTTT
64 AAAATTCAACTTAAAATCATTTATAAGA-TTATAAAA-C-CTTTAAAGCGAGTAACTAGTATTTC
* * *
8416591 GAAGGCATGAGTGACTATAAATAG-CAATTTCTTGTCAATGGATG
126 AAAGGCATGAGTGACTATAAATGGAC-TTTTCTTGTCAATGGATG
* ** * *
8416635 GCTTTTGCTTCACATTTTTTGAGGCAAACATCCAATTATGAATTGTTTTAACCAAAAATGAAAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATG--AAA
* * ** * * *
8416700 AAAAATTCAACTTATAATCATATGCAAGATTATAAAACCATGTAAATC-AGGTAACTAGTATTTT
63 AAAAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGA-GTAACTAGTATTTC
* * * ** * * *
8416764 GAAGGCATGAGTGACAAGAAATACACTTTTCATATTAATGGATG
126 AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* ** * *
8416808 GCTTTCGCTTCACATTTCTTGAGGCAAACATCCAATTATGATCTATTTTAACAAAAAATGGAAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAAC-AAAAATGAAAAA
* * * * **
8416873 AAATTCAACTCAAAATCATTTATAAGATTATAGAACCATTTAAACCGGGTAACTAGTATTTGGAA
65 AAATTCAACTTAAAATCATTTATAAGATTATAAAACC-TTTAAAGCGAGTAACTAGTATTTCAAA
* * *
8416938 GGCATGAGTAACAATAAATAGACTTTTCTTGTCAATGGATG
129 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * * * * * * * * * *
8416979 ACTTTCGATTCACGTTTCTTAAGGTAAACATGCAATTATGATCTGTTTCAACCAAAAAT-TAAAA
1 GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAA-CAAAAATGAAAAA
*
8417043 AAATTTAACTTAAAATCATTTA
65 AAATTCAACTTAAAATCATTTA
8417065 AAACGACTAA
Statistics
Matches: 13111, Mismatches: 2820, Indels: 1605
0.75 0.16 0.09
Matches are distributed among these distances:
159 6 0.00
160 31 0.00
161 191 0.01
162 83 0.01
163 188 0.01
164 171 0.01
165 96 0.01
166 245 0.02
167 527 0.04
168 671 0.05
169 2664 0.20
170 2780 0.21
171 3639 0.28
172 1291 0.10
173 234 0.02
174 18 0.00
175 2 0.00
176 34 0.00
177 52 0.00
178 61 0.00
179 6 0.00
180 7 0.00
181 12 0.00
182 10 0.00
183 10 0.00
184 1 0.00
185 2 0.00
186 2 0.00
187 2 0.00
188 6 0.00
189 67 0.01
190 2 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.34
Consensus pattern (169 bp):
GCTTTTGCTTCACATTTCTCAAGGCAAACATCCAATTATGAACTATTTTAACAAAAATGAAAAAA
AATTCAACTTAAAATCATTTATAAGATTATAAAACCTTTAAAGCGAGTAACTAGTATTTCAAAGG
CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
Found at i:8401460 original size:167 final size:169
Alignment explanation
Indices: 8401194--8401606 Score: 434
Period size: 169 Copynumber: 2.4 Consensus size: 169
8401184 TTTCAAAGGA
* * * * *
8401194 AAACATCCAAA-TATGATCTATTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATT
1 AAACAT-CAAATTATGATCT-GTTCAACAAAAAATGAAAAAAAAATCAATTTAAAATTATTT-TT
* * * * * * *
8401258 ACATTATAAAATCACTTAAAATGTGTAATTAGGCTTTCGAAGGCATGAAT-GCTGTAAATGGCCT
63 AAATTATAAAATCACTTAAAATGAGTAACTAGGCTTTCGAAGGCATGAATCACTATAAATAGAC-
* * *
8401322 TTCTTG-T-C-AATTGATAG-TTTTCGCTTCATGTTT-TCCAACGT
127 TT-TTGCTACAAATAGAGAGCTTTT-GCTTCATGTTTAT-CAACGG
8401363 AAACATCAAATTATGATCTG-TCAACAAAAAATGAAAAAAAAATCAATTTAAAATTATTTTTAAA
1 AAACATCAAATTATGATCTGTTCAACAAAAAATGAAAAAAAAATCAATTTAAAATTATTTTTAAA
* ** * *
8401427 TTTATAAAATTACTTAAGGTGAGTAGCTAGGCTTTCGAAGGTATGAATCACTATAAATAGACTTT
66 -TTATAAAATCACTTAAAATGAGTAACTAGGCTTTCGAAGGCATGAATCACTATAAATAGACTTT
* *
8401492 TGCTACAAATAGAGGGCTTTTGCTTCATGTTTATCAAGGG
130 TGCTACAAATAGAGAGCTTTTGCTTCATGTTTATCAACGG
* *
8401532 AAACATCAAATTATGATCTGTTTTAA-AGAAAAATG--AAAAAAATCAATTTAAAATTATTTATA
1 AAACATCAAATTATGATCTG-TTCAACA-AAAAATGAAAAAAAAATCAATTTAAAATTATTTTTA
8401594 AAGTTATAAAATC
64 AA-TTATAAAATC
8401607 GTTTAAAGCT
Statistics
Matches: 207, Mismatches: 26, Indels: 22
0.81 0.10 0.09
Matches are distributed among these distances:
166 7 0.03
167 78 0.38
168 14 0.07
169 92 0.44
170 6 0.03
171 10 0.05
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.34
Consensus pattern (169 bp):
AAACATCAAATTATGATCTGTTCAACAAAAAATGAAAAAAAAATCAATTTAAAATTATTTTTAAA
TTATAAAATCACTTAAAATGAGTAACTAGGCTTTCGAAGGCATGAATCACTATAAATAGACTTTT
GCTACAAATAGAGAGCTTTTGCTTCATGTTTATCAACGG
Found at i:8415266 original size:20 final size:20
Alignment explanation
Indices: 8415236--8415289 Score: 83
Period size: 20 Copynumber: 2.6 Consensus size: 20
8415226 GTGACTATAA
8415236 ATAGACTTTTCCTAC-ATATGG
1 ATAG-CTTTTCCT-CTATATGG
8415257 ATAGCTTTTCCTCTATATGG
1 ATAGCTTTTCCTCTATATGG
8415277 ATAGCTTTTCCTC
1 ATAGCTTTTCCTC
8415290 CACATTTCTC
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
19 1 0.03
20 27 0.84
21 4 0.12
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.43
Consensus pattern (20 bp):
ATAGCTTTTCCTCTATATGG
Found at i:8417183 original size:149 final size:151
Alignment explanation
Indices: 8416922--8417214 Score: 387
Period size: 150 Copynumber: 2.0 Consensus size: 151
8416912 TTAAACCGGG
*
8416922 TAACTAGTATTTGGAAGGCATGAGTAACAATAAATAGACTTTTCTTGTCAATGGATGACTTTCGA
1 TAACTAGTATTTGAAAGGCATGAGTAACAATAAATAGACTTTTCTTGTCAATGGATGACTTTCGA
** * * * *
8416987 TTCACGTTTCTTAAGGTAAACATGCAATTATGATCTGTTTCAACCAAAAATTAAAAA-AATTTAA
66 TTCACGTTTCCCAAGGTAAACATGCAAGTATGAACTATTTCAACCAAAAATTAAAAAGAATTCAA
8417051 CTTAAAATCATTTAAAACGAC
131 CTTAAAATCATTTAAAACGAC
* *** * * *
8417072 TAACTAGTATTTTAAAGGCATGAGTGGTAATAAATGGATTTTTCTTGT-AATGGATGGCTTTC-A
1 TAACTAGTATTTGAAAGGCATGAGTAACAATAAATAGACTTTTCTTGTCAATGGATGACTTTCGA
* * *
8417135 CTTTACGTTTCCCAAGGTGAACAT-CTAAGTATGAACTATTTTAACCAAAAATTAAAAAGAATTC
66 -TTCACGTTTCCCAAGGTAAACATGC-AAGTATGAACTATTTCAACCAAAAATTAAAAAGAATTC
8417199 AACTTAAAATCATTTA
129 AACTTAAAATCATTTA
8417215 TAAGATTATA
Statistics
Matches: 123, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
148 2 0.02
149 60 0.49
150 61 0.50
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.34
Consensus pattern (151 bp):
TAACTAGTATTTGAAAGGCATGAGTAACAATAAATAGACTTTTCTTGTCAATGGATGACTTTCGA
TTCACGTTTCCCAAGGTAAACATGCAAGTATGAACTATTTCAACCAAAAATTAAAAAGAATTCAA
CTTAAAATCATTTAAAACGAC
Found at i:8417235 original size:149 final size:150
Alignment explanation
Indices: 8416936--8417237 Score: 344
Period size: 149 Copynumber: 2.0 Consensus size: 150
8416926 TAGTATTTGG
**
8416936 AAGGCATGAGTAACAATAAATAGACTTTTCTTGTCAATGGATGACTTTCGATTCACGTTTCTTAA
1 AAGGCATGAGTAACAATAAATAGACTTTTCTTGTCAATGGATGACTTTCGATTCACGTTTCCCAA
* * * *
8417001 GGTAAACATGCAATTATGATCTGTTTCAACCAAAAATTAAAAAAATTTAACTTAAAATCATTTAA
66 GGTAAACATGCAAGTATGAACTATTTCAACCAAAAATTAAAAAAATTCAACTTAAAATCATTTAA
** **
8417066 AACGACTAACTAGTATTTTA
131 AACGACTAAAAACCATTTTA
*** * * * *
8417086 AAGGCATGAGTGGTAATAAATGGATTTTTCTTGT-AATGGATGGCTTTC-ACTTTACGTTTCCCA
1 AAGGCATGAGTAACAATAAATAGACTTTTCTTGTCAATGGATGACTTTCGA-TTCACGTTTCCCA
* *
8417149 AGGTGAACAT-CTAAGTATGAACTATTTTAACCAAAAATTAAAAAGAATTCAACTTAAAATCATT
65 AGGTAAACATGC-AAGTATGAACTATTTCAACCAAAAATTAAAAA-AATTCAACTTAAAATCATT
* *
8417213 TATAA-GATTATAAAACCA-TTTA
128 TAAAACGACTA-AAAACCATTTTA
8417235 AAG
1 AAG
8417238 CATCTAATAA
Statistics
Matches: 127, Mismatches: 21, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
148 2 0.02
149 71 0.56
150 54 0.43
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (150 bp):
AAGGCATGAGTAACAATAAATAGACTTTTCTTGTCAATGGATGACTTTCGATTCACGTTTCCCAA
GGTAAACATGCAAGTATGAACTATTTCAACCAAAAATTAAAAAAATTCAACTTAAAATCATTTAA
AACGACTAAAAACCATTTTA
Found at i:8418105 original size:169 final size:167
Alignment explanation
Indices: 8417592--8422059 Score: 1891
Period size: 170 Copynumber: 26.5 Consensus size: 167
8417582 TGTAGTCAGC
* * * * * * * *
8417592 AGTGACTATAAATAGCCATTTCTTGTCAAAGGATGACTTTCGCTTCGCATTTCTCGAGGAAAACA
1 AGTGACAATAAATAGACTTTTCTTGTCAATGGATGACTTTCGCTTCACGTTTCTCAAGGTAAACA
* * ** *
8417657 TCCAATTATGA-ATTGTTTTAACCAAAAATTAAAAAAAATCAACTTGTAATCATTTACAAGATTA
66 TCCAATTATGATA-TGTTTT-ACTAAAAA-TAAAAAAATTCAACTTAAAATCATTTATAAGATTA
* * * * *
8417721 TAAAACCATGTAAATCGGGTAACTAGCATTTCGAAGGCATT
128 TAAAACCATTTAAATCGAGTAACTAGTATTTC-AAAGCATG
* * * * * * * * *
8417762 AGCGACAATAAATAGACTTTTCCTATCAATGGATGGCTTTCACTTCACATTTCTCGAGGCACACA
1 AGTGACAATAAATAGACTTTTCTTGTCAATGGATGACTTTCGCTTCACGTTTCTCAAGGTAAACA
* * * * * * *
8417827 TCCAATTATGATCTATTTTAATAAAAAATTAAAAAACTTTCAACTCAAAAGCATTTATAATATTA
66 TCCAATTATGATATGTTTTACT-AAAAA-TAAAAAA-ATTCAACTTAAAATCATTTATAAGATTA
8417892 TAAAACCATTTAAATCG-GATAACTAGTATTTCAAAGGCATG
128 TAAAACCATTTAAATCGAG-TAACTAGTATTTCAAA-GCATG
* * * * *
8417933 AGTGAAAATAAATAGACTTTTCTTGTCAATGGATGGCTTTCACTTCATGTTTCTCAAGGTGAACA
1 AGTGACAATAAATAGACTTTTCTTGTCAATGGATGACTTTCGCTTCACGTTTCTCAAGGTAAACA
*
8417998 TCCAATCATGATATGTTTTACTAAAAATAAAAAAATTTCAACTTAAAATCATTTATAAGATTATA
66 TCCAATTATGATATGTTTTACTAAAAATAAAAAAA-TTCAACTTAAAATCATTTATAAGATTATA
* * * * * *
8418063 AAACTATTTAAAGCGACTAACTAGTGTTTCGAAGATATG
130 AAACCATTTAAATCGAGTAACTAGTATTTCAAAG-CATG
* * * * * * * * * *
8418102 AGTGACCAGAAATGGGCTTTTCTTGTGAATGCAT-ATTTTTGTTTCACGTTTC-CTATGGTAAAC
1 AGTGACAATAAATAGACTTTTCTTGTCAATGGATGACTTTCGCTTCACGTTTCTC-AAGGTAAAC
* ** * * * * * **
8418165 ATCAAATTACAATTTATTTTAATGTAAAATGAAAAAAAATCAACTTAAAATTGTTTATAAGATTA
65 ATCCAATTATGATATGTTTTACT-AAAAAT-AAAAAAATTCAACTTAAAATCATTTATAAGATTA
* * * **
8418230 TAAAACTATTGAAAGCGAGTAACTAGGCTTTCAAAGTCATG
128 TAAAACCATTTAAATCGAGTAACTAGTATTTCAAAG-CATG
* * * * * * *
8418271 AATGGA-TATAAATGGACTTTTCTTATCAATGGATGTCTTTTGCTTCATGTTT-TCCAAGGTAAA
1 AGT-GACAATAAATAGACTTTTCTTGTCAATGGATGACTTTCGCTTCACGTTTCT-CAAGGTAAA
* * * * * * * **
8418334 TATCCAATTATGATCTGTTTTAAC-AGAAACAGAAGAAAATGCAACTTAAAATGAGTTATAACTT
64 CATCCAATTATGATATGTTTT-ACTA-AAA-ATAAAAAAATTCAACTTAAAATCATTTATAAGAT
* *
8418398 TATAAAACCATTTAAATTGTGTAACT-GTTATTTCAAACGCATG
126 TATAAAACCATTTAAATCGAGTAACTAG-TATTTCAAA-GCATG
* * ** * * * * **
8418441 AGTGACTATATATAGACTTTTCTTGTCAATGGATAAGGCAAATAC-C--C-CATTATGATCTATT
1 AGTGACAATAAATAGACTTTTCTTGTCAATGGAT---G-ACTTTCGCTTCACGTT-T-CTCAAGG
* * * *** ** * * * * * * *
8418502 TTAACA--GAA-AATG--A-G-AAAACTTCAACT--TAAAA-GC-ATTTATAA-GA-TTATAAAA
60 TAAACATCCAATTATGATATGTTTTACTAAAAATAAAAAAATTCAACTTAAAATCATTTATAAGA
** * * * * * * *
8418554 TTATTGAA--AGTGAGTAA-CTAG--GCT-GTCA----GAGGTATG
125 TTATAAAACCATTTA--AATCGAGTAACTAGT-ATTTCAAAGCATG
* * * * * * ** * * *
8418590 AATGGCTATAAATGGACTTTTTTTCTCAATTAATGGCTTTTGCATCACGTTTCTCAAGGTAAACA
1 AGTGACAATAAATAGACTTTTCTTGTCAATGGATGACTTTCGCTTCACGTTTCTCAAGGTAAACA
* * * * * * *
8418655 TTCAATTATGATCTATTTTAATAGAAAAAGAAAAAAATGT-AACTTAAAATCGA-TTCTAAGTTT
66 TCCAATTATGATATGTTTTACT--AAAAATAAAAAAAT-TCAACTTAAAATC-ATTTATAAGATT
* * *
8418718 ATAAAACCACTTAAATCGGGTAACTATTATTTCAAAGGCATG
127 ATAAAACCATTTAAATCGAGTAACTAGTATTTCAAA-GCATG
* * * ** *
8418760 AGTGACAATAAATGGACTTTTCTTGTCACTGGATGGCTTTCGCTAGACGTTTCTCAAGGCAAACA
1 AGTGACAATAAATAGACTTTTCTTGTCAATGGATGACTTTCGCTTCACGTTTCTCAAGGTAAACA
* * * *
8418825 TGCAATTATGATCTGCTTTAACCAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTAT
66 TCCAATTATGATATG-TTTTACTAAAAAT-AAAAAAATTCAACTTAAAATCATTTATAAGATTAT
* * *
8418890 AAAACCATTTAAAGT-GACTAACTAGTGTTTCAAAGGTATG
129 AAAACCATTTAAA-TCGAGTAACTAGTATTTCAAA-GCATG
** ** * * * * * * *
8418930 AGTGACCGTTGATGGACTTTTCTTGTGAATGCATTATTTTTGTTTCACGTTTC-CTAAGGCT-AA
1 AGTGACAATAAATAGACTTTTCTTGTCAATGGATGACTTTCGCTTCACGTTTCTC-AAGG-TAAA
* ** * * *
8418993 CATCCAACTACAATATATTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCGTTTATAAGATT
64 CATCCAATTATGATATGTTTT-ACTAAAAAT-AAAAAAATTCAACTTAAAATCATTTATAAGATT
* * * **
8419058 ATAAAACTATTGAAAGCGAGTAACTAGGCTTTCAAAGTCATG
127 ATAAAACCATTTAAATCGAGTAACTAGTATTTCAAAG-CATG
* * * * * **
8419100 AATGGA-TATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAAGAAAAAC
1 AGT-GACAATAAATAGACTTTTCTTGTCAATGGATGACTTTCGCTTCACGTTTCTCAAGGTAAAC
* * * * * * **
8419164 ATCCAGTTATGATCTGTTTTAATAGAAAAATAAGAAAAATGCAGCTTAAAATCAGTTATAACTTT
65 ATCCAATTATGATATGTTTTACT--AAAAATAA-AAAAATTCAACTTAAAATCATTTATAAGATT
* * * * *
8419229 ATAAAACCATTCAAATTGTGTAACT-GTTATTTCGTATGCATG
127 ATAAAACCATTTAAATCGAGTAACTAG-TATTTC-AAAGCATG
* * * * * * *
8419271 AGTGACTATATATAGACCTTTT-TTATCAATAGATGGCTTTCGCTTCAAGTTTC-CTAAGGCAAA
1 AGTGACAATAAATAGA-CTTTTCTTGTCAATGGATGACTTTCGCTTCACGTTTCTC-AAGGTAAA
* * * * * * * * *
8419334 TACCCCATTATGATCTATTTTAACAAAAAATGAGAAAACTTCAACTTAAAAGCATTTATAAGATT
64 CATCCAATTATGATATGTTTT-ACTAAAAAT-AAAAAAATTCAACTTAAAATCATTTATAAGATT
** *
8419399 ATAAAATTATTGAAAGT-GAGTAACTAGGT-TGTT------A-G
127 ATAAAACCATTTAAA-TCGAGTAACTA-GTAT-TTCAAAGCATG
* * * * * * * * **
8419434 AG-G-C-ATGAAT-GGC--TTCTTGTCAATAGATGGCTTTTGCTTTACTTTTCCCAAGAAAAACA
1 AGTGACAATAAATAGACTTTTCTTGTCAATGGATGACTTTCGCTTCACGTTTCTCAAGGTAAACA
* * * * * * * * * * *
8419493 ACCAATTATAATCTATTTTAATAGAAAATGAAAAAAATGCAACTTAAAATAAATTCTAAGTTTCT
66 TCCAATTATGATATGTTTTACTA-AAAAT-AAAAAAATTCAACTTAAAATCATTTATAAGATTAT
* * * *
8419558 AAAACTACTTAAATCGGGTAACTATTATTTCAAAGGCATG
129 AAAACCATTTAAATCGAGTAACTAGTATTTCAAA-GCATG
* * * * * * * ** * *
8419598 AGTGACTATAAATAGACTTTTATTGTCAAAGGAT-AGTTTTTGCTTCACATTTTTGGAGCTAATC
1 AGTGACAATAAATAGACTTTTCTTGTCAATGGATGA-CTTTCGCTTCACGTTTCTCAAGGTAAAC
** * * *
8419662 ATCCAATTATGA-ACAATTTTAGTCAAAAATGAAAAAAAAATTTCAAATTTAAATCATTTATAAG
65 ATCCAATTATGATA-TGTTTTACT-AAAAAT---AAAAAAA-TTCAACTTAAAATCATTTATAAG
*
8419726 ATTATAAAACCATTT-AATGCGAGTAACTAGTATTTCAAAGGCATA
124 ATTATAAAACCATTTAAAT-CGAGTAACTAGTATTTCAAA-GCATG
* * * * ** * * * *
8419771 AGTTACTATAAATGGACTTTTCTTGTGAATGGATGGTTTTTGTTTCAC-TTTTTCTAGGCTAAAC
1 AGTGACAATAAATAGACTTTTCTTGTCAATGGATGACTTTCGCTTCACGTTTCTCAAGG-TAAAC
* * * * * ** * * *
8419835 AACAAATAATGATCTGTTTAAAAAATAAATAAAAGAAAAT-AATTTAGAATCATTTATAAGATTA
65 ATCCAATTATGATATGTTTTACTAA-AAATAAAA-AAATTCAACTTAAAATCATTTATAAGATTA
* * * * *
8419899 TAAAATCACTTAAAGT-GAGTAACTAAGT-TTTCGAAGGTATA
128 TAAAACCATTTAAA-TCGAGTAACT-AGTATTTC-AAAGCATG
* * * * * * * *
8419940 AGTAACTATAAATGGACTTTTCTT-CCAAATCGAT-AGCTTTTC-CTTCATGTTTCCCAAGGAAA
1 AGTGACAATAAATAGACTTTTCTTGTC-AATGGATGA-C-TTTCGCTTCACGTTTCTCAAGGTAA
* * * * * * * *
8420002 ATATCCAATTATGATCTGTTTTAATAGAAAAT-GAAAAATCTAAATTTGAAATCATTTTTAA-AG
63 ACATCCAATTATGATATGTTTTACTA-AAAATAAAAAAAT-TCAACTTAAAATCATTTATAAGA-
* * * * * ** * * *
8420065 TTATAAAATCACTTAAAGCAAGTAACGAGGCTGTCGAAGGTATG
125 TTATAAAACCATTTAAATCGAGTAACTAGTATTTC-AAAGCATG
* * * ** * * *
8420109 AGTGACTATAAATGGACATTTCTTGTCAATAAATGGCTTTCGCTTCACATTTCTCAAGGAAAACA
1 AGTGACAATAAATAGACTTTTCTTGTCAATGGATGACTTTCGCTTCACGTTTCTCAAGGTAAACA
* * *
8420174 TCCAATTAT-AAATTGTTTTA--AACAATAAAAAAAAATTCAACTCAAAATCATTTATAAGATTA
66 TCCAATTATGATA-TGTTTTACTAA-AA-ATAAAAAAATTCAACTTAAAATCATTTATAAGATTA
* *
8420236 TAAAATCATTTAAAGT-GA-TAACTCGTATTTCAAAGACATG
128 TAAAACCATTTAAA-TCGAGTAACTAGTATTTCAAAG-CATG
* * * * * * * ** *
8420276 AGTGACCATAAATAGACTTTTTCATG--AATGGATTATTTTTGCTTTATGTTTCTTGAGGCAAAC
1 AGTGACAATAAATAGAC-TTTTCTTGTCAATGGATGACTTTCGCTTCACGTTTCTCAAGGTAAAC
* * * * *
8420339 ATCTAATTATGATCTATTTTAACAAAAAATAAATAAAATTCAACTTAAAATCATATATAAGATTA
65 ATCCAATTATGATATGTTTT-ACTAAAAATAAA-AAAATTCAACTTAAAATCATTTATAAGATTA
* * ** *
8420404 TAAAACTATTGAAAGT-GAGTAACTAGGCTTTCCAAAGTATG
128 TAAAACCATTTAAA-TCGAGTAACTAGTATTT-CAAAGCATG
* * * * * *
8420445 AATGGCTATAAAT-GAACTTTTATTGTCAATGGAT-AGCTTTCGCCTCACGTTTC-CTAATGTAA
1 AGTGACAATAAATAG-ACTTTTCTTGTCAATGGATGA-CTTTCGCTTCACGTTTCTC-AAGGTAA
* * * *
8420507 ACATCTAATTATGATATGTTTTAATGAAGAATAAAAAAAATTCAACTTAAAATGATTTATAAGAT
63 ACATCCAATTATGATATGTTTTACT-AAAAAT-AAAAAAATTCAACTTAAAATCATTTATAAGAT
* * * *
8420572 TAGAAAACCATTTAAATTGTGGTAACTAGTATTTTAAAGGCATG
126 TATAAAACCATTTAAATCG-AGTAACTAGTATTTCAAA-GCATG
* * * * * * ** ** *
8420616 AGTGACTATAAATAGACTTTTCTTCTTAACGAATGGCTTTTC-CTTCATTTTTCAAAAGGCAAAC
1 AGTGACAATAAATAGACTTTTCTTGTCAATGGATGAC-TTTCGCTTCACGTTTCTCAAGGTAAAC
* * * * * *
8420680 ATCCAATTATGCTCTATTTTA-TCAAAACATGAAAAACATTCAACTTAAAATCATTTATAACACT
65 ATCCAATTATGATATGTTTTACT-AAAA-AT-AAAAAAATTCAACTTAAAATCATTTATAAGATT
*** * *
8420744 ATAAAACTGCTTAAAGCGAGTAACTAGGT-TTTCGAAG-ATGTG
127 ATAAAACCATTTAAATCGAGTAACTA-GTATTTCAAAGCA--TG
* * * * * ** * * * *
8420786 AATGACTATAAATGGTCTTTTCTTATCAATTAATGGCTTTTGCTTCATGTTT-TCCAATGTAAAC
1 AGTGACAATAAATAGACTTTTCTTGTCAATGGATGACTTTCGCTTCACGTTTCT-CAAGGTAAAC
* * * * * *
8420850 ATCAAATTATGAT-TTTTTTCAACAAAAAATGAGAAGAAA-TCAATTTAGAATCATTT-TAA-AG
65 ATCCAATTATGATATGTTTT--ACTAAAAAT-A-AAAAAATTCAACTTAAAATCATTTATAAGA-
* * * ** * **
8420911 TTATAAAATCACTTAAGGT-GAGTAGTTGGGCTTTCGAAAGCATG
125 TTATAAAACCATTTAA-ATCGAGTAACTAGTATTTC-AAAGCATG
* * * * * *** * *
8420955 CGTCACTACAAATGGACTTTTGC-TAAAAATGGATGGCTTTCGCTTCATGTTTCT-AA-GTCAAA
1 AGTGACAATAAATAGACTTTT-CTTGTCAATGGATGACTTTCGCTTCACGTTTCTCAAGGT-AAA
* * * * * *
8421017 CATCCAATTATGAT-TCATTTTAATAAAAAATGAAAAAAA-TCTATTTAAAATTATTTTTAA-AG
64 CATCCAATTATGATAT-GTTTTACT-AAAAAT-AAAAAAATTCAACTTAAAATCATTTATAAGA-
* * * *
8421079 TTATAAAATCGA-TTAAAGCGAGTAACTAG-ACTTTTGAAGGCATG
125 TTATAAAA-CCATTTAAATCGAGTAACTAGTA--TTTCAAAGCATG
* * * * * * ** *
8421123 AATGGCTATAAAT-GAACTTTTCTTGTCAATGGATGGCTTTCACTTCATGTTTCTTGAGGCAAAC
1 AGTGACAATAAATAG-ACTTTTCTTGTCAATGGATGACTTTCGCTTCACGTTTCTCAAGGTAAAC
* * *
8421187 ATCCAATTATGATATGTTTTAATGAAAAATGAAAAAGAATTCAACTTAAAATTATTTATAAAATT
65 ATCCAATTATGATATGTTTTACT-AAAAAT-AAAAA-AATTCAACTTAAAATCATTTATAAGATT
* * * * *
8421252 ATAAAACCATTTAAATTGGGTAACTAGTATTCCGAAGGTATG
127 ATAAAACCATTTAAATCGAGTAACTAGTATTTC-AAAGCATG
* * * * * * *
8421294 AGTGACAATAAATAGACTTTTCATGTGAATGGAT-AGCTTTTGCTTTAAGTTT-TCAGATGCAAA
1 AGTGACAATAAATAGACTTTTCTTGTCAATGGATGA-CTTTCGCTTCACGTTTCTCA-AGGTAAA
* * * * *
8421357 CATTCAATTAT-AAACCGTTTTAACAAAAAATTAAAAAAA--AAACTTTAAAATCATTTATAAGA
64 CATCCAATTATGATA-TGTTTT-ACTAAAAA-TAAAAAAATTCAAC-TTAAAATCATTTATAAGA
* * * * * * *
8421419 GTAGAAAATCTTTTAAAGCGACTAACTAGTATTTCGAACA-TATG
125 TTATAAAACCATTTAAATCGAGTAACTAGTATTTC-AA-AGCATG
* ** * * ** * * * *
8421463 AGTGGCCGTAAATGGACTTTGT-TTATCAGCGAATGGCTTTTGCTTCACGTTTC-CTAAGGCAAA
1 AGTGACAATAAATAGACTTT-TCTTGTCAATGGATGACTTTCGCTTCACGTTTCTC-AAGGTAAA
* * * * *
8421526 CATTCAATTACGATGTATTTTAAC-AAAAACTGAAAAAAA-ACTAACTTAAAATCATTTATAAGA
64 CATCCAATTATGATATGTTTT-ACTAAAAA-T-AAAAAAATTC-AACTTAAAATCATTTATAAGA
* * * ** * * *
8421589 TTATAAAACTATTGACAGT-GAGTAACTAGGCTTCCAAAGGTATC
125 TTATAAAACCATTTA-AATCGAGTAACTAGTATTTCAAA-GCATG
* * * * * * * * * ** *
8421633 AATGGCTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTTATGTTTATTGAGGAAAACA
1 AGTGACAATAAATAGACTTTTCTTGTCAATGGATGACTTTCGCTTCACGTTTCTCAAGGTAAACA
* * * * * * * *
8421698 TCCAATTATGATCTATTTTAACAAAAAAAGAAAAAAATGCAGCTTAAAATCAGTTATAAGTTTAT
66 TCCAATTATGATATGTTTT-AC-TAAAAATAAAAAAATTCAACTTAAAATCATTTATAAGATTAT
* * * * **
8421763 AAAACCATTTAAATC-AGGTAATTATTAATTCGAAGGTGTG
129 AAAACCATTTAAATCGA-GTAACTAGTATTTC-AAAGCATG
* * *
8421803 AGTGACTATAAAT-GAACTTTTCTTGTCAATGGAT-AGCTTTCGCTTCACATTT-TCAGAGGCAA
1 AGTGACAATAAATAG-ACTTTTCTTGTCAATGGATGA-CTTTCGCTTCACGTTTCTCA-AGGTAA
* * ***
8421865 ACATCTAATTATGA-ATTGTTTTAACCAAAAATAAAAAAACAATTCAAGACAAAATCATTTATAA
63 ACATCCAATTATGATA-TGTTTT-ACTAAAAAT--AAAAA-AATTCAACTTAAAATCATTTATAA
* * * *
8421929 GATTATAAAACCATTTAAAGCGACTAAGTAGTATTTCGAAAGCAGG
123 GATTATAAAACCATTTAAATCGAGTAACTAGTATTTC-AAAGCATG
* * * * * ** *
8421975 AGTAACTATAAATGGA-TCTTTCTTATCAATGGATGGCTTTCGCTTCACGTTTCTCAAGAAAAAT
1 AGTGACAATAAATAGACT-TTTCTTGTCAATGGATGACTTTCGCTTCACGTTTCTCAAGGTAAAC
*
8422039 ATCTAATTATGATATGTTTTA
65 ATCCAATTATGATATGTTTTA
8422060 ACGAAAATGG
Statistics
Matches: 3255, Mismatches: 800, Indels: 485
0.72 0.18 0.11
Matches are distributed among these distances:
145 1 0.00
146 2 0.00
147 8 0.00
148 2 0.00
149 35 0.01
150 4 0.00
153 1 0.00
154 6 0.00
155 3 0.00
156 11 0.00
157 114 0.04
158 8 0.00
159 7 0.00
160 12 0.00
161 5 0.00
162 15 0.00
163 6 0.00
164 11 0.00
165 4 0.00
166 46 0.01
167 68 0.02
168 254 0.08
169 702 0.22
170 1111 0.34
171 530 0.16
172 167 0.05
173 121 0.04
174 1 0.00
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34
Consensus pattern (167 bp):
AGTGACAATAAATAGACTTTTCTTGTCAATGGATGACTTTCGCTTCACGTTTCTCAAGGTAAACA
TCCAATTATGATATGTTTTACTAAAAATAAAAAAATTCAACTTAAAATCATTTATAAGATTATAA
AACCATTTAAATCGAGTAACTAGTATTTCAAAGCATG
Found at i:8418773 original size:170 final size:168
Alignment explanation
Indices: 8418475--8426481 Score: 2452
Period size: 170 Copynumber: 47.2 Consensus size: 168
8418465 GTCAATGGAT
* * * * * * * *
8418475 AAGGCAAATACCCCATTATGATCTATTTTAACAGAAAATGAGAAAACTTCAACTTAAAAGCATTT
1 AAGGCAAACATCCAATTATGATCTATTTTAACA-AAAAAGAAAAAAATTCAACTTAAAATCAGTT
** * ** * * * * *
8418540 ATAAGATTATAAAATTATTGAAAGT-GAGTAACTAGGCTGTCAGAGGTATGAATGGCTATAAATG
65 ATAAGATTATAAAACCATTCAAA-TCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATG
* * * * *
8418604 GACTTTTTTTCTCAATTAATGGCTTTTGCATCACGTTTCTC
129 GACTTTTCTTGTCAATGAATGGCTTTCGCTTCACGTTTC-C
* * *
8418645 AAGGTAAACATTCAATTATGATCTATTTTAATAGAAAAAGAAAAAAATGT-AACTTAAAATC-GA
1 AAGGCAAACATCCAATTATGATCTATTTTAACA-AAAAAGAAAAAAAT-TCAACTTAAAATCAG-
* * * * *
8418708 TTCTAAGTTTATAAAACCACTT-AAATCGGGTAACTATTATTTCAAAGGCATGAGTGACAATAAA
63 TTATAAGATTATAAAACCA-TTCAAATCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAA
* * **
8418772 TGGACTTTTCTTGTCACTGGATGGCTTTCGCTAGACGTTTCTC
127 TGGACTTTTCTTGTCAATGAATGGCTTTCGCTTCACGTTTC-C
* ** * *
8418815 AAGGCAAACATGCAATTATGATCTGCTTTAACCAAAAATGAAAAAAATTCAACTTAAAATCATTT
1 AAGGCAAACATCCAATTATGATCTATTTTAA-CAAAAAAGAAAAAAATTCAACTTAAAATCAGTT
* * * * ** **
8418880 ATAAGATTATAAAACCATTTAAAGT-GACTAACTAGTGTTTCAAAGGTATGAGTGACCGTTGATG
65 ATAAGATTATAAAACCATTCAAA-TCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATG
* * *** * *
8418944 GACTTTTCTTGTGAATGCATTATTTTTGTTTCACGTTTCC
129 GACTTTTCTTGTCAATGAATGGCTTTCGCTTCACGTTTCC
* * ** * *
8418984 TAAGGCTAACATCCAACTACAATATATTTTAACAAAAAATAAAAAAAATTCAACTTAAAATC-GT
1 -AAGGCAAACATCCAATTATGATCTATTTTAACAAAAAA-GAAAAAAATTCAACTTAAAATCAG-
* * * ** * *
8419048 TTATAAGATTATAAAACTATTGAAAGCGAGTAACTAGGCTTTCAAAGTCATGAATGGA-TATAAA
63 TTATAAGATTATAAAACCATTCAAATCGAGTAACTAGTATTTCAAAGGCATGAGT-GACTATAAA
*
8419112 TGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCC
127 TGGACTTTTCTTGTCAATGAATGGCTTTCGCTTCACGTTT-CC
** * * * * * *
8419155 AAGAAAAACATCCAGTTATGATCTGTTTTAATAGAAAAATAAGAAAAATGCAGCTTAAAATCAGT
1 AAGGCAAACATCCAATTATGATCTATTTTAACA-AAAAAGAA-AAAAATTCAACTTAAAATCAGT
** * * ** * *
8419220 TATAACTTTATAAAACCATTCAAATTGTGTAACT-GTTATTTCGTATGCATGAGTGACTATATAT
64 TATAAGATTATAAAACCATTCAAATCGAGTAACTAG-TATTTCAAAGGCATGAGTGACTATAAAT
* * *
8419284 AGACCTTTT-TTATCAAT-AGATGGCTTTCGCTTCAAGTTTCC
128 GGA-CTTTTCTTGTCAATGA-ATGGCTTTCGCTTCACGTTTCC
* * * * * * *
8419325 TAAGGCAAATACCCCATTATGATCTATTTTAACAAAAAATGAGAAAACTTCAACTTAAAAGCATT
1 -AAGGCAAACATCCAATTATGATCTATTTTAACAAAAAA-GAAAAAAATTCAACTTAAAATCAGT
** * * ** *
8419390 TATAAGATTATAAAATTATTGAAAGT-GAGTAACTAG--GTT----GTTA-GAG-G-C-ATGAAT
64 TATAAGATTATAAAACCATTCAAA-TCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAAT
* * *
8419444 GG-C--TTCTTGTCAAT-AGATGGCTTTTGCTTTACTTTTCCC
128 GGACTTTTCTTGTCAATGA-ATGGCTTTCGCTTCACGTTT-CC
** * * * * * * *
8419483 AAGAAAAACAACCAATTATAATCTATTTTAATAGAAAATGAAAAAAATGCAACTTAAAATAAATT
1 AAGGCAAACATCCAATTATGATCTATTTTAACA-AAAAAGAAAAAAATTCAACTTAAAATCAGTT
* * * * * * *
8419548 CTAAGTTTCTAAAACTACTT-AAATCGGGTAACTATTATTTCAAAGGCATGAGTGACTATAAATA
65 ATAAGATTATAAAACCA-TTCAAATCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATG
* * * * * * * *
8419612 GACTTTTATTGTCAAAGGATAGTTTTTGCTTCACATTT-T
129 GACTTTTCTTGTCAATGAATGGCTTTCGCTTCACGTTTCC
** * * * * * * *
8419651 TGGAGCTAATCATCCAATTATGAACAATTTTAGTCAAAAATGAAAAAAAAATTTCAAATTTAAAT
1 AAG-GC-AAACATCCAATTATGATCTATTTTA-ACAAAAA--AGAAAAAAA-TTCAACTTAAAAT
* * * *
8419716 CATTTATAAGATTATAAAACCATT-TAATGCGAGTAACTAGTATTTCAAAGGCATAAGTTACTAT
60 CAGTTATAAGATTATAAAACCATTCAAAT-CGAGTAACTAGTATTTCAAAGGCATGAGTGACTAT
* * * * * * *
8419780 AAATGGACTTTTCTTGTGAATGGATGGTTTTTGTTTCACTTTTTC
124 AAATGGACTTTTCTTGTCAATGAATGGCTTTCGCTTCACGTTTCC
* * * * * * * * * * *
8419825 TAGGCTAAACAACAAATAATGATCT-GTTTAAAAAATAAATAAAAGAAAAT-AATTTAGAATCAT
1 AAGGC-AAACATCCAATTATGATCTATTTTAACAAA-AAAGAAAA-AAATTCAACTTAAAATCAG
* * * * *
8419888 TTATAAGATTATAAAATCACTT-AAAGT-GAGTAACTAAGT-TTTCGAAGGTATAAGTAACTATA
63 TTATAAGATTATAAAACCA-TTCAAA-TCGAGTAACT-AGTATTTCAAAGGCATGAGTGACTATA
* * *
8419950 AATGGACTTTTCTT-CCAAATCG-ATAGCTTTTC-CTTCATGTTTCCC
125 AATGGACTTTTCTTGTC-AAT-GAATGGC-TTTCGCTTCACGTTT-CC
* * * * * * * * *
8419995 AAGGAAAATATCCAATTATGATCTGTTTTAATAGAAAATG--AAAAATCTAAATTTGAAATCATT
1 AAGGCAAACATCCAATTATGATCTATTTTAACA-AAAAAGAAAAAAAT-TCAACTTAAAATCAGT
* * * * * ** * * *
8420058 TTTAA-AGTTATAAAATCACTT-AAAGCAAGTAACGAGGCTGTCGAAGGTATGAGTGACTATAAA
64 TATAAGA-TTATAAAACCA-TTCAAATCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAA
* * *
8420121 TGGACATTTCTTGTCAATAAATGGCTTTCGCTTCACATTTCTC
127 TGGACTTTTCTTGTCAATGAATGGCTTTCGCTTCACGTTTC-C
* * * * * *
8420164 AAGGAAAACATCCAATTATAAAT-TGTTTTAA-ACAATAA-AAAAAAATTCAACTCAAAATCATT
1 AAGGCAAACATCCAATTAT-GATCTATTTTAACA-AAAAAGAAAAAAATTCAACTTAAAATCAGT
* * * * *
8420226 TATAAGATTATAAAATCATTTAAAGT-GA-TAACTCGTATTTCAAAGACATGAGTGACCATAAAT
64 TATAAGATTATAAAACCATTCAAA-TCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAAT
* * * *** * * * *
8420289 AGACTTTTTCATG--AATGGATTATTTTTGCTTTATGTTTCTT
128 GGAC-TTTTCTTGTCAATGAATGGCTTTCGCTTCACGTTTC-C
* * *
8420330 GAGGCAAACATCTAATTATGATCTATTTTAACAAAAAATAAATAAAATTCAACTTAAAATCA-TA
1 AAGGCAAACATCCAATTATGATCTATTTTAACAAAAAAGAAA-AAAATTCAACTTAAAATCAGT-
* * ** * * *
8420394 TATAAGATTATAAAACTATTGAAAGT-GAGTAACTAGGCTTTCCAAA-GTATGAATGGCTATAAA
64 TATAAGATTATAAAACCATTCAAA-TCGAGTAACTAGTATTT-CAAAGGCATGAGTGACTATAAA
* * * * *
8420457 TGAACTTTTATTGTCAATGGATAGCTTTCGCCTCACGTTTCC
127 TGGACTTTTCTTGTCAATGAATGGCTTTCGCTTCACGTTTCC
* * * * * * * * *
8420499 TAATGTAAACATCTAATTATGATATGTTTTAATGAAGAATA-AAAAAAATTCAACTTAAAATGAT
1 -AAGGCAAACATCCAATTATGATCTATTTTAA-CAA-AAAAGAAAAAAATTCAACTTAAAATCAG
* * * * *
8420563 TTATAAGATTAGAAAACCATTTAAATTGTGGTAACTAGTATTTTAAAGGCATGAGTGACTATAAA
63 TTATAAGATTATAAAACCATTCAAATCG-AGTAACTAGTATTTCAAAGGCATGAGTGACTATAAA
* * * * ** *
8420628 TAGACTTTTCTTCTTAACGAATGGCTTTTC-CTTCATTTTTCAA
127 TGGACTTTTCTTGTCAATGAATGGC-TTTCGCTTCACGTTTC-C
* * * * *
8420671 AAGGCAAACATCCAATTATGCTCTATTTTATCAAAACATGAAAAACATTCAACTTAAAATCATTT
1 AAGGCAAACATCCAATTATGATCTATTTTAACAAAA-AAGAAAAAAATTCAACTTAAAATCAGTT
* * * * *** *
8420736 ATAACACTATAAAACTGC-TT-AAAGCGAGTAACTAGGT-TTTCGAAGATGTGAATGACTATAAA
65 ATAAGATTATAAAAC--CATTCAAATCGAGTAACTA-GTATTTCAAAGGCATGAGTGACTATAAA
* * * * *
8420798 TGGTCTTTTCTTATCAATTAATGGCTTTTGCTTCATGTTTTCC
127 TGGACTTTTCTTGTCAATGAATGGCTTTCGCTTCACG-TTTCC
* * * * * * *
8420841 AATGTAAACATCAAATTATGAT-TTTTTTCAACAAAAAATGAGAAGAAA-TCAATTTAGAATCA-
1 AAGGCAAACATCCAATTATGATCTATTTT-AACAAAAAA-GA-AAAAAATTCAACTTAAAATCAG
* * * ** * ** * * *
8420903 TTTTAA-AGTTATAAAATCACTT-AAGGT-GAGTAGTTGGGCTTTCGAAA-GCATGCGTCACTAC
63 TTATAAGA-TTATAAAACCA-TTCAA-ATCGAGTAACTAGTATTTC-AAAGGCATGAGTGACTAT
*** * * *
8420964 AAATGGACTTTTGC-TAAAAATGGATGGCTTTCGCTTCATGTTTCT
124 AAATGGACTTTT-CTTGTCAATGAATGGCTTTCGCTTCACGTTTCC
* * * * * *
8421009 AAGTCAAACATCCAATTATGAT-TCATTTTAATAAAAAATGAAAAAAA-TCTATTTAAAATTATT
1 AAGGCAAACATCCAATTATGATCT-ATTTTAACAAAAAA-GAAAAAAATTCAACTTAAAATCAGT
* * * ** * *
8421072 TTTAA-AGTTATAAAATCGATT-AAAGCGAGTAACTAG-ACTTTTGAAGGCATGAATGGCTATAA
64 TATAAGA-TTATAAAA-CCATTCAAATCGAGTAACTAGTA-TTTCAAAGGCATGAGTGACTATAA
* * * * *
8421134 ATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCATGTTTCTT
126 ATGGACTTTTCTTGTCAATGAATGGCTTTCGCTTCACGTTTC-C
* * * * * * *
8421178 GAGGCAAACATCCAATTATGATATGTTTTAATGAAAAATGAAAAAGAATTCAACTTAAAATTATT
1 AAGGCAAACATCCAATTATGATCTATTTTAA-CAAAAAAGAAAAA-AATTCAACTTAAAATCAGT
* * * * * * * * *
8421243 TATAAAATTATAAAACCATTTAAATTGGGTAACTAGTATTCCGAAGGTATGAGTGACAATAAATA
64 TATAAGATTATAAAACCATTCAAATCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATG
* * * * * * * *
8421308 GACTTTTCATGTGAATGGATAGCTTTTGCTTTAAGTTTTC
129 GACTTTTCTTGTCAATGAATGGCTTTCGCTTCACGTTTCC
* * * * ** * * *
8421348 AGATGCAAACATTCAATTATAAACCGTTTTAACAAAAAATTAAAAAAA--AAACTTTAAAATCAT
1 A-AGGCAAACATCCAATTATGATCTATTTTAACAAAAAA-GAAAAAAATTCAAC-TTAAAATCAG
* * * * * * * * *** * **
8421411 TTATAAGAGTAGAAAATCTTTTAAAGCGACTAACTAGTATTTCGAACATATGAGTGGCCGTAAAT
63 TTATAAGATTATAAAACCATTCAAATCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAAT
* ** *
8421476 GGACTTTGT-TTATCAGCGAATGGCTTTTGCTTCACGTTTCC
128 GGACTTT-TCTTGTCAATGAATGGCTTTCGCTTCACGTTTCC
* * * * * *
8421517 TAAGGCAAACATTCAATTACGATGTATTTTAACAAAAACTGAAAAAAA-ACTAACTTAAAATCAT
1 -AAGGCAAACATCCAATTATGATCTATTTTAACAAAAA-AGAAAAAAATTC-AACTTAAAATCAG
* * * ** * * * * *
8421581 TTATAAGATTATAAAACTATTGACAGT-GAGTAACTAGGCTTCCAAAGGTATCAATGGCTATAAA
63 TTATAAGATTATAAAACCATTCA-AATCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAA
* * * * **
8421645 TGGACTTTTCTTGTCAATGGATGGCTTTTGCTTTATGTTTATT
127 TGGACTTTTCTTGTCAATGAATGGCTTTCGCTTCACGTTT-CC
* * * *
8421688 GAGGAAAACATCCAATTATGATCTATTTTAACAAAAAAAGAAAAAAATGCAGCTTAAAATCAGTT
1 AAGGCAAACATCCAATTATGATCTATTTTAAC-AAAAAAGAAAAAAATTCAACTTAAAATCAGTT
* * * * * * **
8421753 ATAAGTTTATAAAACCATTTAAATC-AGGTAATTATTAATTCGAAGGTGTGAGTGACTATAAATG
65 ATAAGATTATAAAACCATTCAAATCGA-GTAACTAGTATTTCAAAGGCATGAGTGACTATAAATG
* * * * *
8421817 AACTTTTCTTGTCAATGGATAGCTTTCGCTTCACATTTTC
129 GACTTTTCTTGTCAATGAATGGCTTTCGCTTCACGTTTCC
* * * ***
8421857 AGAGGCAAACATCTAATTATGAAT-TGTTTTAACCAAAAATAAAAAAACAATTCAAGACAAAATC
1 A-AGGCAAACATCCAATTATG-ATCTATTTTAA-CAAAAA-AGAAAAA-AATTCAACTTAAAATC
* * * * * * *
8421921 ATTTATAAGATTATAAAACCATTTAAAGCGACTAAGTAGTATTTCGAAA-GCAGGAGTAACTATA
61 AGTTATAAGATTATAAAACCATTCAAATCGAGTAACTAGTATTTC-AAAGGCATGAGTGACTATA
* *
8421985 AATGGA-TCTTTCTTATCAATGGATGGCTTTCGCTTCACGTTTCTC
125 AATGGACT-TTTCTTGTCAATGAATGGCTTTCGCTTCACGTTTC-C
** * * * * * * * ** * * *
8422030 AAGAAAAATATCTAATTATGATATGTTTTAACGAAAATG--GACCATTTAAGTTAAAATCATTTA
1 AAGGCAAACATCCAATTATGATCTATTTTAACAAAAAAGAAAAAAATTCAACTTAAAATCAGTTA
* ** * * * * *
8422093 TAAAACTGAAAATTAAAAAGAATTTAAGTTAAAATC-ATTTA-TAAG-ATTAT-AAA-ACTATTT
66 T--AA--G---ATT-ATAA-AA--CCA-TTCAAATCGAGTAACT-AGTATT-TCAAAGGC-A-TG
** * * * * ** * * * *** ** *
8422153 AAAG-CAACAAAT-TAGTATTTCGAAGGC-ATGAATGACTATAAATGGAC-TTTTC
115 AGTGACTATAAATGGACT-TTTC-TTGTCAATGAATGGCTTTCGCTTCACGTTTCC
** ** * ** * * ** * * * * ** *
8422205 TTGTTAATAGAT--GGTTTTCGCT-TCACTTTT--C-CCAAGGCAAACAA--CAAATTATTATCT
1 AAGGCAA-ACATCCAATTAT-GATCT-A-TTTTAACAAAAAAGAAAAAAATTCAACTTAAAATCA
* * ** *** * * * * *** * * *
8422262 GTTTTAACA--A-AAAATAAAAAAAATCAATTTAA--ATTATTTATAAAATTATAAAATCACTA-
62 GTTATAAGATTATAAAACCATTCAAATCGA-GTAACTAGTATTT-CAAAGGCAT-GAGTGACTAT
* * ** * * * *** ** * *
8422321 AAAGTAAGAAATTAAGCTT-TCGAAGGCGTGAGTGACTATAAATGGACTTTTCT
124 AAA-T--GGACTT-TTCTTGTC-AA----TGAATGGCTTTCGCTTCACGTTTCC
* ** * * *** * *** * ** * * ** **
8422374 TA--C-AA-AT-GGA-TA-GCTTTCCCTTCACAGTTCTCAGGGTAAACATCCAA-TTATGATCTT
1 AAGGCAAACATCCAATTATGATCTATTTTAACA---AAAAAGAAAAAAATTCAACTTAAAATCAG
* ** * * * ** * ** * *
8422431 TTTTAAGAGAAATAAAA-AAAT-ATATTTA-AAATCTA-T-TTT-AAAGTTATGAAATCACTTTG
63 TTATAAGA-TTATAAAACCATTCAAATCGAGTAA-CTAGTATTTCAAAGGCATG-AGTGAC--T-
* * ** * * * *** ** *
8422490 AGCAAAT-AACTCGAT-TTGTGAAGGCATGCATGGCTATAAATGGACATTTCTC
122 A-TAAATGGACT-TTTCTTGT-CA---ATGAATGGCTTTCGCTTCACGTTTC-C
** *** * * ** * * * * *** * *
8422542 ATCG-ATGGATGGC--TTTTCCTTCACATTTT-CCAAGGTAAACATCTAATTATGAACTGTTTTA
1 AAGGCAAACAT-CCAATTAT-GATC-TATTTTAACAA--AAAAGAAAAAAAT-TCAAC----TTA
** ** * * * * * ** ** *
8422603 ACCAAAAAGGAAAAAAAATTCAACTCAAAATCATTGATAA--GATTATAAAACCA-TT-AAAAGC
56 A--AATCA-GTTATAAGATT--A-T-AAAACCATTCA-AATCGAGTA-ACTAGTATTTCAAAGGC
* * ** * * *** * * * *
8422664 --GACTAACTAGTATTTCGAAGGC-ATAAGTGACCATAAATGGACTTTTC-TTGTCATC-TAATT
112 ATGAGTGACTA-TAAAT-G--GACTTTTCTTGTCAATGAATGG-C-TTTCGCT-TCA-CGT--TT
8422724 --
167 CC
* * * * * *
8422724 ATGATCAGAAATATCTAATTATGATCTATTTTAACAAAATAATGAACAAAATTGAACTTAAAATC
1 AAG-GC--AAACATCCAATTATGATCTATTTTAACAAAA-AA-GAAAAAAATTCAACTTAAAATC
* * * * ** * * *
8422789 ATTTATAAGATTATAAAACTATTAAAAGT-GCGTAACTAGGCTTTTAAAGGCATGAATGGCTATA
61 AGTTATAAGATTATAAAACCATTCAAA-TCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATA
* *
8422853 AATAGACTTTTCTTGTCAATGAATGGCTTTCGTCTT-ACGTTTCTG
125 AATGGACTTTTCTTGTCAATGAATGGCTTTCG-CTTCACGTTTC-C
* * * * * * * *
8422898 GATGCAAACATCCAATTATGATCTGTTTTAATGAAACATGAAAAAAATTCAATTTAAAATCATTT
1 AAGGCAAACATCCAATTATGATCTATTTTAA-CAAAAAAGAAAAAAATTCAACTTAAAATCAGTT
** * * * * *
8422963 ATAAGATTGGAAAACTATTTAAATCGAGGTAACTAGTATTTTAAAGGTATGAATGACTATAAATG
65 ATAAGATTATAAAACCATTCAAATCGA-GTAACTAGTATTTCAAAGGCATGAGTGACTATAAATG
* * * * * * *
8423028 GACTTTTCTTATTAATGGATGGCTTTCACTTTACTTTTCT
129 GACTTTTCTTGTCAATGAATGGCTTTCGCTTCACGTTTCC
* *
8423068 AGAGGCAAACATCCAATTATGATCTTTTTTAACAAAAAATGAAAAAAAAATT-AACTTGAAATCA
1 A-AGGCAAACATCCAATTATGATCTATTTTAACAAAAAA-G--AAAAAAATTCAACTTAAAATCA
* * * * ** * *
8423132 -TTATAAGATTATAAAACTACTT-AAAGCGAATAATTAGGCTTTC-GAGGACATGAATGACTATA
62 GTTATAAGATTATAAAACCA-TTCAAATCGAGTAACTAGTATTTCAAAGG-CATGAGTGACTATA
*** * * * *
8423194 AATATCCTTTTCTTATCAATTG-ATGGCTTTCGCTTTATGTTTTTC
125 AATGGACTTTTCTTGTCAA-TGAATGGCTTTCGCTTCACG-TTTCC
* * ** * * * * * *
8423239 AATGTAAACATGAAATTATGATATGTTTCT-ACAAAAAAATGAAAACAATT-TATTTAAAATCAT
1 AAGGCAAACATCCAATTATGATCTATTT-TAAC-AAAAAA-GAAAAAAATTCAACTTAAAATCAG
* * * ** * * *
8423302 TTTTAA-AGTTATAAAATCACTT-AAGGT-GAGTAACTAGGCTTTCGAAGGCATGAGTTACTGTA
63 TTATAAGA-TTATAAAACCA-TTCAA-ATCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATA
* * * * * * * *
8423364 AATGAACCTTTGTTG-CAAAT-AGATAGTTTTCACTTCACATTTCTT
125 AATGGACTTTTCTTGTC-AATGA-ATGGCTTTCGCTTCACGTTTC-C
* * ** * * * * *
8423409 AAGGAAAACATCCAATTATGATCTATGTTAATGAAAAACAAAAAAACATCAATTTAAAATTATTT
1 AAGGCAAACATCCAATTATGATCTATTTTAACAAAAAAGAAAAAAA-TTCAACTTAAAATCAGTT
* * ** * * * * * *
8423474 TTAA-AGTTATAAAATCGGTAAAAGT-TAGTGACTAGATTTTTGAAA-GCATCG-GTGGCTATAA
65 ATAAGA-TTATAAAACCATTCAAA-TCGAGTAACTAG-TATTTCAAAGGCAT-GAGTGACTATAA
* * * * * * **
8423535 ATGAAATTTTCTTGTCAAAGGATGGCTATCACTTCACGTTTTTT
126 ATGGACTTTTCTTGTCAATGAATGGCTTTCGCTTCACG-TTTCC
* * * *
8423579 AAGGCAAACATCCAATTATAATTTATTTT-----AATA-AAAAAAATT-AACTTAAAATCATTTA
1 AAGGCAAACATCCAATTATGATCTATTTTAACAAAAAAGAAAAAAATTCAACTTAAAATCAGTTA
* * * * *
8423637 TAAGATTATAAAACCATTCAAATCGGGTAACTAGCATTTCGAAGGCATAATTGA-TAATAAATGG
66 TAAGATTATAAAACCATTCAAATCGAGTAACTAGTATTTCAAAGGCATGAGTGACT-ATAAATGG
* * * * * *
8423701 ACTTTTATTATCAATGGATGGCTTTTGTTTCACGTTTTTC
130 ACTTTTCTTGTCAATGAATGGCTTTCGCTTCACG-TTTCC
* ** * * * * *
8423741 TAGAAAAACATCCAATTACGATCTGTTTTAACGAAGAATGAAAAAAGATTCAACTTAAAATCATT
1 AAGGCAAACATCCAATTATGATCTATTTTAAC-AAAAAAGAAAAAA-ATTCAACTTAAAATCAGT
* * * *
8423806 TATAAGATTATAAAACCATTTC-AATCGGGTAGCTAGTATTTCAAAGGCATGAGTGGCTATAGAT
64 TATAAGATTATAAAACCA-TTCAAATCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAAT
* * * *
8423870 AGACTTTTCTTATCAATGAATGGCTTTCGTTTCATGTTTCTC
128 GGACTTTTCTTGTCAATGAATGGCTTTCGCTTCACGTTTC-C
* * * * * * * *
8423912 GAGGCAAACATCCAATTATAAACTGTTTTAACTAAAAATGAAAAAAA---AGCCTAAAATCATTT
1 AAGGCAAACATCCAATTATGATCTATTTTAAC-AAAAAAGAAAAAAATTCAACTTAAAATCAGTT
* * * * * * *
8423974 AAAAGATTATAAAACTATTTAAA-GGAACTAACTAGTATTTCAAACGCATGAGTGACTATAAATA
65 ATAAGATTATAAAACCATTCAAATCG-AGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATG
* * * * ** * * *
8424038 GACTTTTCTTATGAGTGACTGATTTTTGCTTTACGTTTTCT
129 GACTTTTCTTGTCAATGAATGGCTTTCGCTTCACG-TTTCC
* * * *
8424079 AAGGCAAACATCCAATTATGATCTATTTTAACCAAAAATGAGAAAACTTCAACTTAAAATCATTT
1 AAGGCAAACATCCAATTATGATCTATTTTAA-CAAAAAAGAAAAAAATTCAACTTAAAATCAGTT
*** * * * **
8424144 ATAAGATTATAAAGTTATTGAAAGCGGGTAACTAAG-ATTTCAAAGGCATGA-AAAGCTATAAAT
65 ATAAGATTATAAAACCATTCAAATCGAGTAACT-AGTATTTCAAAGGCATGAGTGA-CTATAAAT
* * * * *
8424207 GGACTTTTTTTGTCAATGGATGGCTTTCGTTTCATGTTTCTT
128 GGACTTTTCTTGTCAATGAATGGCTTTCGCTTCACGTTTC-C
* * *
8424249 GAGGCAAACATCCAATTATGATCTATTTTAAC------CAAAAAAATGT-AACTTAAAATCTGTT
1 AAGGCAAACATCCAATTATGATCTATTTTAACAAAAAAGAAAAAAAT-TCAACTTAAAATCAGTT
* * * * * * *
8424307 TTGAGTTTGTAAAACCATTTAAAT-TAGGTAACTATTATTTCAAAGGCATGAGTGACTATAAATG
65 ATAAGATTATAAAACCATTCAAATCGA-GTAACTAGTATTTCAAAGGCATGAGTGACTATAAATG
* * * * * * **
8424371 GACTTCTCTTG-CTAA-CAGATGCCTTTTGGTTCATGTTTTT
129 GACTTTTCTTGTC-AATGA-ATGGCTTTCGCTTCACGTTTCC
* * * * *
8424411 AGAGGCAAACATCCAATTATGAACTATTTTAACCAAAAATGAAAAAAAATT-AAATTAAAATTAT
1 A-AGGCAAACATCCAATTATGATCTATTTTAA-CAAAAAAG-AAAAAAATTCAACTTAAAATCAG
** * * * * **
8424475 TTATAAGATTATAAAATTATTTCTAGT-GACTAACTAGTATTTCGAAGATATGAGTGACTATAAA
63 TTATAAGATTATAAAACCA-TTCAAATCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAA
* * * *
8424539 TGGA-TTCTTTTTCTCAAT-AGATGGCTTTCGTTTTACGTTTCAC
127 TGGACTT-TTCTTGTCAATGA-ATGGCTTTCGCTTCACGTTTC-C
** * * * * *
8424582 AAGTTAAACATCCAAGTATGAACTATTTTAACTAAATATAGAAAAGAATTCAACTTAAAATCATT
1 AAGGCAAACATCCAATTATGATCTATTTTAAC-AAA-AAAGAAAAAAATTCAACTTAAAATCAGT
* * * * * * *
8424647 TATAAGATTATAAAACCATTTAAAGCGACTAATTAGTAATATGAAA-GTATGAGTGACTATAAAT
64 TATAAGATTATAAAACCATTCAAATCGAGTAACTAGT-ATTTCAAAGGCATGAGTGACTATAAAT
* * * *
8424711 GGACTTTTCTTGTGAATGGATGG-TTTCGTTTCAC-TTTTC
128 GGACTTTTCTTGTCAATGAATGGCTTTCGCTTCACGTTTCC
* * * * * * * * *
8424750 ATGAGGTAAACAGCAAATTATGATATATTTTAACAAAATATAAAGAAAAATCAATTTAAAATCAT
1 A--AGGCAAACATCCAATTATGATCTATTTTAACAAAAAAGAAA-AAAATTCAACTTAAAATCAG
* * * * *
8424815 TTATAACATTATAAAATCACTT-AAAGCGAGTAACTAAG-CTTTCGAAGGCATGAGTGACTATAA
63 TTATAAGATTATAAAACCA-TTCAAATCGAGTAACT-AGTATTTCAAAGGCATGAGTGACTATAA
* * * * * *
8424878 ATGGACTTTCCTT-ACAAATGGATAGCCTTC-CTTTCACATTTCCC
126 ATGGACTTTTCTTGTC-AATGAATGGCTTTCGC-TTCACGTTT-CC
*** * * * * * * *
8424922 AACATAAACGTCCAATTATGATTTATTTTAATGAAATATAG-AAAAAA-TCAATTTAAAATTATT
1 AAGGCAAACATCCAATTATGATCTATTTTAA-CAAA-AAAGAAAAAAATTCAACTTAAAATCAGT
* * * * * * *
8424985 TTTAA-AGTTAT-AAA--A-TCACAT--A-AAATTA-T-TTTAATGAAAGTATGAGTGACTATAA
64 TATAAGA-TTATAAAACCATTCAAATCGAGTAACTAGTATTTCA--AAGGCATGAGTGACTATAA
* * * * *
8425040 ATGGACATTTCTTGTCAATGGATAGCTTTCACTTCACATTTCCC
126 ATGGACTTTTCTTGTCAATGAATGGCTTTCGCTTCACGTTT-CC
* * * * * ** * * *
8425084 AATGTAAACATCTAATTATGAACTGTTTTAACTAAAGATGGAAAATATTTCAACTTAAAATCATT
1 AAGGCAAACATCCAATTATGATCTATTTTAAC-AAA-AAAGAAAAAAATTCAACTTAAAATCAGT
* * * * ** *
8425149 TATAAGATTATAAAACTATTAAAAGCGAGTAACTAATATTTTGAAGGCATGAGTGACTATAAATA
64 TATAAGATTATAAAACCATTCAAATCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATG
* * * * *
8425214 GATTTTTCTTGTCTATGGATGACTTTCGCTTCACATTTCTC
129 GACTTTTCTTGTCAATGAATGGCTTTCGCTTCACGTTTC-C
* * * * * * * * *
8425255 TAGGCAAACATCCAAGTATAAACTGTTTTAACCAAAAATGAAAGAGAATTTAACTTAAAATCATT
1 AAGGCAAACATCCAATTATGATCTATTTTAA-CAAAAAAGAAA-AAAATTCAACTTAAAATCAGT
* * * * * * * * * *
8425320 TATAAGATTGTAGAACCATTTAAAGCAACTAATTAGTATTTCGAAGAC-TGAGTGACTATAAATA
64 TATAAGATTATAAAACCATTCAAATCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATG
*
8425384 GACTTTTCTTGTCAAT-AGATGGCTTTCGCTTCACTTGTTT-T
129 GACTTTTCTTGTCAATGA-ATGGCTTTCGCTTCAC--GTTTCC
* * * * * * * * * *
8425425 GAGGTAAACAACAAATTATTATCTGTTTTAATAAAAAAATAAAAAAACTCAATTTAAAATCA-TT
1 AAGGCAAACATCCAATTATGATCTATTTTAA-CAAAAAAGAAAAAAATTCAACTTAAAATCAGTT
* * * * * * *
8425489 ATAAGATTATAAAATCACTT-AAAGCGAGTAACTAAG-CTTTCGAATGTATGAGTAACTATAAAT
65 ATAAGATTATAAAACCA-TTCAAATCGAGTAACT-AGTATTTCAAAGGCATGAGTGACTATAAAT
* * * *
8425552 AGACTTTT-TT-TACAAATGGATGGTTTTTGCTTCACGTTTCCC
128 GGACTTTTCTTGT-C-AATGAATGGCTTTCGCTTCACGTTT-CC
* * * * ** * * *
8425594 AAGGTAAACATCCAATCATGATCTGTTTTAAGGAAAAATTAAAAAAA-TAAATTTAAAATTA-TT
1 AAGGCAAACATCCAATTATGATCTATTTTAA-CAAAAAAGAAAAAAATTCAACTTAAAATCAGTT
* * * * * * ** ** * *
8425657 ATTGAA-TTTAGAAAATCACTT-AAAGCAAGTAATTAGGCTTTTGAAGGTATGAGTGACTGTAAA
65 A-T-AAGATTATAAAACCA-TTCAAATCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAA
** * * * * * *
8425720 TGCCCATTTT-TTGTCAGTGGATGACTTTTGTTTCACATTTTCC
127 TGGAC-TTTTCTTGTCAATGAATGGCTTTCGCTTCAC-GTTTCC
* * *
8425763 AAGGCAAACATCCAATTATGAACTATTTTAACTAAAAATGAAAAAAAAATTCAACTTAAAATCAT
1 AAGGCAAACATCCAATTATGATCTATTTTAAC-AAAAA--AGAAAAAAATTCAACTTAAAATCAG
* * * ** * *
8425828 TTATAAGATTATAAAACTAGTT-AAAGCGACTAACTAGTATTTTGAAGGTATGAGTGACCATAAA
63 TTATAAGATTATAAAACCA-TTCAAATCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAA
* * * *** *
8425892 TAGACTTTT-TCTGTGAATG-GTTTTTTTTGCTTC-CTGTTTCC
127 TGGACTTTTCT-TGTCAATGAATGGCTTTCGCTTCAC-GTTTCC
* * * *
8425933 TAAGGTAAACATCCAATTATGATCTATTTTAATAAAAAATGAATAAAATTCAACTTAAAATCATT
1 -AAGGCAAACATCCAATTATGATCTATTTTAACAAAAAA-GAAAAAAATTCAACTTAAAATCAGT
* * * * ** * * * *
8425998 TATAAGATTATAAAACTATTGACAA-CAAGTAATTAGGCTTTTAAAAGCATGAATGGCTATAAAT
64 TATAAGATTATAAAACCATTCA-AATCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAAT
* * * *
8426062 GGACTTTTCTTGTCAATGGATGGCTTTCGCCTCATGTTTCTT
128 GGACTTTTCTTGTCAATGAATGGCTTTCGCTTCACGTTTC-C
* * * * * * * *
8426104 GATGTAAACATCCAATTATGATCTGTTTTAACGAAGATGAAAAAAATTCAACTTAAAATCATTTA
1 AAGGCAAACATCCAATTATGATCTATTTTAACAAAAAAGAAAAAAATTCAACTTAAAATCAGTTA
* * * * * *
8426169 TAAGATTAGAAAACCATTTAAATCGGGGCAACGAGTATTTCAAAGGCACGAGTGACTATAAATGG
66 TAAGATTATAAAACCATTCAAATC-GAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATGG
* * * * *
8426234 ACTTTTCTTATTAATGAATGGCTTTCACTTCACTTTTCT
130 ACTTTTCTTGTCAATGAATGGCTTTCGCTTCACGTTTCC
* * * * **
8426273 AGAGGCAAACATCTAACTAAGATCTATTTTGACAAAAAATGAAAAATAAATTCAACTTAAAATTT
1 A-AGGCAAACATCCAATTATGATCTATTTTAACAAAAAA-G-AAAA-AAATTCAACTTAAAATCA
* * * * * * ** ** *
8426338 TTTATAAGAATATAAAATCACTT-AAAGCAAGTAATTAGGCTTTTGAAGGCATGAATGACTATAA
62 GTTATAAGATTATAAAACCA-TTCAAATCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAA
* * *
8426402 ATGGCCTTTCCTTGTCAATTG-ATGGCTTTCGCTTCGTA-TTTTCC
126 ATGGACTTTTCTTGTCAA-TGAATGGCTTTCGCTTC--ACGTTTCC
* * * * *
8426446 AATGTAAACATCAAATTATGATTTATTTCAACAAAA
1 AAGGCAAACATCCAATTATGATCTATTTTAACAAAA
8426482 GGTGAAAAAA
Statistics
Matches: 5883, Mismatches: 1495, Indels: 916
0.71 0.18 0.11
Matches are distributed among these distances:
156 3 0.00
157 95 0.02
158 17 0.00
159 10 0.00
160 20 0.00
161 16 0.00
162 198 0.03
163 139 0.02
164 44 0.01
165 14 0.00
166 52 0.01
167 258 0.04
168 351 0.06
169 995 0.17
170 1863 0.32
171 1022 0.17
172 346 0.06
173 203 0.03
174 32 0.01
175 32 0.01
176 23 0.00
177 31 0.01
178 21 0.00
179 12 0.00
181 11 0.00
182 11 0.00
183 6 0.00
184 3 0.00
185 24 0.00
186 18 0.00
187 6 0.00
188 7 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.34
Consensus pattern (168 bp):
AAGGCAAACATCCAATTATGATCTATTTTAACAAAAAAGAAAAAAATTCAACTTAAAATCAGTTA
TAAGATTATAAAACCATTCAAATCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATGGA
CTTTTCTTGTCAATGAATGGCTTTCGCTTCACGTTTCC
Found at i:8419113 original size:340 final size:338
Alignment explanation
Indices: 8417101--8426645 Score: 4257
Period size: 340 Copynumber: 28.2 Consensus size: 338
8417091 ATGAGTGGTA
* * * * ** * *
8417101 ATAAATGGATTTTTCTTGT-AATGGATGGCTTTCACTTTACGTTTCCCAAGGTGAACATCTAAGT
1 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATCCAATT
* * *
8417165 ATGAACTATTTTAACCAAAAATTAAAAAGAATTCAACTTAAAATCATTTATAAGATTATAAAACC
66 ATGATCTGTTTTAA-CAAAAATGAAAAA-AATTCAACTTAAAATCATTTATAAGATTATAAAACC
* * * * * * *
8417230 ATTTAAAG-CATCTAA-TAAGTGTTTCGAAGGCATGAGTAACTTTAAATAGACTTTTCTTGTGAA
129 ATTTAAAGTGA-GTAACT-AGTATTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAA
* * *** *
8417293 TGGATG-GTTTTCGCTTCCCT-TTTCCTAAGGCAAACAAAAAATTATGATCTGTTTTAACAAAAA
192 TGGATGACTTTT-GCTT-CATGTTTCCTAAGGCAAACATCCAATTATGATCTATTTTAACAAAAA
* * * *
8417356 ATAAAAGAAAA-TCGATTTAAAATCATTTATAAGATTATAAAA-TCACTTAAAACGAGTAACTAA
255 ATAAAA-AAAATTCAACTTAAAATCATTTATAAGATTATAAAACT-A-TTAAAGCGAGTAACTAG
* * *
8417419 GCTTTCAAAGGTAGGAGT-GACT
317 GATTTCAAA-GTATGAATGGACT
* * *** * * * *
8417441 ATAAATGAACTTTTCTT-ACAA---AT-G-----G-AAAACATTTGTCAAGGAAAACATCTAATT
1 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATCCAATT
* * * * * * * *
8417495 AGGATCTATTTTAATGAAAAATGAAAAAAA-T-AAATAAAAAATTATTTTTAA-ACTTATAAAAT
66 ATGATCTGTTTTAA-CAAAAATGAAAAAAATTCAACT-TAAAATCATTTATAAGA-TTATAAAAC
* * ** * ** *** * * *
8417557 CACTTAATGCAAGTAGCTAGGCTTTTGTAGTCA-GCAGTGACTATAAATAGCCATTTCTTGTCAA
128 CATTTAAAGTGAGTAACTAGTATTTCAAAGGCATG-AGTGACTATAAATAGACTTTTCTTGTCAA
* * *** * * *
8417621 AGGATGACTTTCGCTTCGCATTT-CTCGAGGAAAACATCCAATTATGAAT-TGTTTTAACCAAAA
192 TGGATGACTTTTGCTTCATGTTTCCT-AAGGCAAACATCCAATTATG-ATCTATTTTAA-CAAAA
* ** * * * * *
8417684 ATTAAAAAAAA-TCAACTTGTAATCATTTACAAGATTATAAAACCATGTAAATCGGGTAACTAGC
254 AATAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTAT-TAAAGCGAGTAACTAGG
* * * *
8417748 ATTTCGAAGGCAT-TA-GCGACA
318 ATTTC-AAAGTATGAATG-GACT
* * * * * * *
8417769 ATAAATAGACTTTTCCTATCAATGGATGGCTTTCACTTCACATTTCTCGAGGCACACATCCAATT
1 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATCCAATT
* * * * * * *
8417834 ATGATCTATTTTAATAAAAAATTAAAAAACTTTCAACTCAAAAGCATTTATAATATTATAAAACC
66 ATGATCTGTTTTAA-CAAAAATGAAAAAA-ATTCAACTTAAAATCATTTATAAGATTATAAAACC
**
8417899 ATTTAAA-TCG-GATAACTAGTATTTCAAAGGCATGAGTGAAAATAAATAGACTTTTCTTGTCAA
129 ATTTAAAGT-GAG-TAACTAGTATTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAA
* ** ** * * * *
8417962 TGGATGGCTTTCACTTCATGTTT-CTCAAGGTGAACATCCAATCATGATATGTTTT-ACTAAAAA
192 TGGATGACTTTTGCTTCATGTTTCCT-AAGGCAAACATCCAATTATGATCTATTTTAACAAAAAA
* *
8418025 TAAAAAAATTTCAACTTAAAATCATTTATAAGATTATAAAACTATTTAAAGCGACTAACTAGTG-
256 TAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTA-TTAAAGCGAGTAACTAG-GA
* * *
8418089 TTTCGAAGATATGAGT-GACC
319 TTTCAAAG-TATGAATGGACT
* * * * ** * * * * *
8418109 AGAAATGGGCTTTTCTTGTGAATGCAT-ATTTTTGTTTCACGTTTC-CTATGGTAAACATCAAAT
1 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-AAGGCAAACATCCAAT
** * * ** * ** *
8418172 TACAATTTATTTTAATGTAAAATGAAAAAAAATCAACTTAAAATTGTTTATAAGATTATAAAACT
65 TATGATCTGTTTTAA-CAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACC
* * ** * * * *
8418237 ATTGAAAGCGAGTAACTAGGCTTTCAAAGTCATGAATGGA-TATAAATGGACTTTTCTTATCAAT
129 ATTTAAAGTGAGTAACTAGTATTTCAAAGGCATGAGT-GACTATAAATAGACTTTTCTTGTCAAT
* * * * *
8418301 GGATGTCTTTTGCTTCATGTTTTCC-AAGGTAAATATCCAATTATGATCTGTTTTAACAGAAACA
193 GGATGACTTTTGCTTCATG-TTTCCTAAGGCAAACATCCAATTATGATCTATTTTAACA-AAAAA
* * * * * ** * ** * *
8418365 -GAAGAAAATGCAACTTAAAATGAGTTATAACTTTATAAAACCATTTAAATTGTGTAACT-GTTA
256 TAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTA-TTAAAGCGAGTAACTAG-GA
* *
8418428 TTTCAAACGCATGAGT-GACT
319 TTTCAAA-GTATGAATGGACT
* * * * *
8418448 ATATATAGACTTTTCTTGTC-A---AT-G-----G----A------T-AAGGCAAATACCCCATT
1 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATCCAATT
* * * * **
8418492 ATGATCTATTTTAACAGAAAATGAGAAAACTTCAACTTAAAAGCATTTATAAGATTATAAAATTA
66 ATGATCTGTTTTAACA-AAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCA
* ** * * * * * * * * **
8418557 TTGAAAGTGAGTAACTAGGCTGTCAGAGGTATGAATGGCTATAAATGGACTTTTTTTCTCAATTA
130 TTTAAAGTGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGG
* * * * * * *
8418622 ATGGCTTTTGCATCACGTTT-CTCAAGGTAAACATTCAATTATGATCTATTTTAATAGAAAAA-G
195 ATGACTTTTGCTTCATGTTTCCT-AAGGCAAACATCCAATTATGATCTATTTTAACA-AAAAATA
* * * * * **
8418685 AAAAAAATGT-AACTTAAAATCGA-TTCTAAGTTTATAAAACCACTTAAATCGGGTAACTATTAT
258 AAAAAAAT-TCAACTTAAAATC-ATTTATAAGATTATAAAACTA-TTAAAGCGAGTAACTAGGAT
* * *
8418748 TTCAAAGGCATGAGT-GACA
320 TTCAAA-GTATGAATGGACT
* ** *
8418767 ATAAATGGACTTTTCTTGTCACTGGATGGCTTTCGCTAGACGTTTCTCAAGGCAAACATGCAATT
1 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATCCAATT
*
8418832 ATGATCTGCTTTAACCAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCA
66 ATGATCTGTTTTAA-CAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCA
* * * ** ** * * *
8418897 TTTAAAGTGACTAACTAGTGTTTCAAAGGTATGAGTGACCGTTGATGGACTTTTCTTGTGAATGC
130 TTTAAAGTGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGG
* * * * * * ** *
8418962 ATTATTTTTGTTTCACGTTTCCTAAGGCTAACATCCAACTACAATATATTTTAACAAAAAATAAA
195 ATGACTTTTGCTTCATGTTTCCTAAGGCAAACATCCAATTATGATCTATTTTAACAAAAAATAAA
* *
8419027 AAAAATTCAACTTAAAATCGTTTATAAGATTATAAAACTATTGAAAGCGAGTAACTAGGCTTTCA
260 AAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTATT-AAAGCGAGTAACTAGGATTTCA
8419092 AAGTCATGAATGGA-T
324 AAGT-ATGAATGGACT
* ** *
8419107 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCCCAAGAAAAACATCCAGTT
1 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATCCAATT
* * * * **
8419172 ATGATCTGTTTTAATAGAAAAAT-AAGAAAAATGCAGCTTAAAATCAGTTATAACTTTATAAAAC
66 ATGATCTGTTTT-A-ACAAAAATGAA-AAAAATTCAACTTAAAATCATTTATAAGATTATAAAAC
* * * ** * * *
8419236 CATTCAAATTGTGTAACT-GTTATTTCGTATGCATGAGTGACTATATATAGACCTTTT-TTATCA
128 CATTTAAAGTGAGTAACTAG-TATTTCAAAGGCATGAGTGACTATAAATAGA-CTTTTCTTGTCA
* * * * * * *
8419299 ATAGATGGCTTTCGCTTCAAGTTTCCTAAGGCAAATACCCCATTATGATCTATTTTAACAAAAAA
191 ATGGATGACTTTTGCTTCATGTTTCCTAAGGCAAACATCCAATTATGATCTATTTTAACAAAAAA
* * * * * *
8419364 TGAGAAAACTTCAACTTAAAAGCATTTATAAGATTATAAAATTATTGAAAGTGAGTAACTAGG--
256 TAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTATT-AAAGCGAGTAACTAGGAT
8419427 TT----GT-T-AGA-GG-C-
320 TTCAAAGTATGA-ATGGACT
* * * * * * ** *
8419438 ATGAATGG-C--TTCTTGTCAATAGATGGCTTTTGCTTTACTTTTCCCAAGAAAAACAACCAATT
1 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATCCAATT
* * * * * * * * * *
8419500 ATAATCTATTTTAATAGAAAATGAAAAAAATGCAACTTAAAATAAATTCTAAGTTTCTAAAACTA
66 ATGATCTGTTTTAACA-AAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCA
* * * * *
8419565 CTTAAA-TCGGGTAACTATTATTTCAAAGGCATGAGTGACTATAAATAGACTTTTATTGTCAAAG
130 TTTAAAGT-GAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATG
* ** ** * * * *
8419629 GAT-AGTTTTTGCTTCACATTT--TTGGAGCTAATCATCCAATTATGAACAATTTTAGTC-AAAA
194 GATGA-CTTTTGCTTCATGTTTCCTAAG-GC-AAACATCCAATTATGATCTATTTTA-ACAAAAA
* * * *
8419690 ATGAAAAAAAAATTTCAAATTTAAATCATTTATAAGATTATAAAACCATTTAATGCGAGTAACTA
255 AT--AAAAAAAA-TTCAACTTAAAATCATTTATAAGATTATAAAACTA-TTAAAGCGAGTAACTA
* * *
8419755 GTATTTCAAAGGCAT-AA-GTTACT
316 GGATTTCAAA-GTATGAATG-GACT
* * * * * * * *
8419778 ATAAATGGACTTTTCTTGTGAATGGATGGTTTTTGTTTCAC-TTTTTCTAGGCTAAACAACAAAT
1 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGC-AAACATCCAAT
* * * * * * *
8419842 AATGATCTGTTTAAAAAATAAAT-AAAAGAAAAT-AATTTAGAATCATTTATAAGATTATAAAAT
65 TATGATCTGTTTTAACAA-AAATGAAAA-AAATTCAACTTAAAATCATTTATAAGATTATAAAAC
* * * * * * *
8419905 CACTTAAAGTGAGTAACTAAGT-TTTCGAAGGTATAAGTAACTATAAATGGACTTTTCTT-CCAA
128 CATTTAAAGTGAGTAACT-AGTATTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTC-A
* * * * * * * *
8419968 ATCGAT-AGCTTTTCCTTCATGTTTCCCAAGGAAAATATCCAATTATGATCTGTTTTAATAGAAA
191 ATGGATGA-CTTTTGCTTCATGTTTCCTAAGGCAAACATCCAATTATGATCTATTTTAACAAAAA
* * * * * * *
8420032 AT--GAAAAATCTAAATTTGAAATCATTTTTAA-AGTTATAAAA-TCACTTAAAGCAAGTAACGA
255 ATAAAAAAAAT-TCAACTTAAAATCATTTATAAGA-TTATAAAACT-A-TTAAAGCGAGTAACTA
* * * *
8420093 GGCTGTCGAAGGTATGAGT-GACT
316 GGATTTC-AAAGTATGAATGGACT
* ** * *
8420116 ATAAATGGACATTTCTTGTCAATAAATGGCTTTCGCTTCACATTTCTCAAGGAAAACATCCAATT
1 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATCCAATT
* * * *
8420181 ATAAAT-TGTTTTAAACAATAA--AAAAAAATTCAACTCAAAATCATTTATAAGATTATAAAATC
66 AT-GATCTGTTTT-AACAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACC
* * * *
8420243 ATTTAAAGTGA-TAACTCGTATTTCAAAGACATGAGTGACCATAAATAGACTTTTTCATG--AAT
129 ATTTAAAGTGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATAGAC-TTTTCTTGTCAAT
* * * * * *
8420305 GGATTATTTTTGCTTTATGTTTCTTGAGGCAAACATCTAATTATGATCTATTTTAACAAAAAATA
193 GGATGACTTTTGCTTCATGTTTCCTAAGGCAAACATCCAATTATGATCTATTTTAACAAAAAATA
* * * *
8420370 AATAAAATTCAACTTAAAATCATATATAAGATTATAAAACTATTGAAAGTGAGTAACTAGGCTTT
258 AAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTATT-AAAGCGAGTAACTAGGATTT
8420435 CCAAAGTATGAATGG-CT
322 -CAAAGTATGAATGGACT
* * * * * * *
8420452 ATAAATGAACTTTTATTGTCAATGGATAGCTTTCGCCTCACGTTTC-CTAATGTAAACATCTAAT
1 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-AAGGCAAACATCCAAT
* * * * * *
8420516 TATGATATGTTTTAATGAAGAATAAAAAAAATTCAACTTAAAATGATTTATAAGATTAGAAAACC
65 TATGATCTGTTTTAA-CAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACC
* * *
8420581 ATTTAAATTGTG-GTAACTAGTATTTTAAAGGCATGAGTGACTATAAATAGACTTTTCTTCTTAA
129 ATTTAAA--GTGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAA
* * * * * ** * * *
8420645 CGAATGGCTTTTCCTTCATTTTTCAAAAGGCAAACATCCAATTATGCTCTATTTTATCAAAACAT
192 TGGATGACTTTTGCTTCATGTTTCCTAAGGCAAACATCCAATTATGATCTATTTTAACAAAAAAT
* * * * * *
8420710 GAAAAACATTCAACTTAAAATCATTTATAACACTATAAAACTGCTTAAAGCGAGTAACTAGGTTT
257 AAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACT-ATTAAAGCGAGTAACTAGGATT
* *
8420775 TCGAAGATGTGAAT-GACT
321 TCAAAG-TATGAATGGACT
* * ** * * * * *
8420793 ATAAATGGTCTTTTCTTATCAATTAATGGCTTTTGCTTCATGTTT-TCCAATGTAAACATCAAAT
1 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCT-CAAGGCAAACATCCAAT
* * * *
8420857 TATGAT-TTTTTTCAACAAAAAATGAGAAGAAA-TCAATTTAGAATCATTT-TAA-AGTTATAAA
65 TATGATCTGTTTT-AAC-AAAAATGA-AAAAAATTCAACTTAAAATCATTTATAAGA-TTATAAA
* * * ** * ** * * * * **
8420918 ATCACTTAAGGTGAGTAGTTGGGCTTTCGAAA-GCATGCGTCACTACAAATGGACTTTTGC-TAA
126 ACCATTTAAAGTGAGTAACTAGTATTTC-AAAGGCATGAGTGACTATAAATAGACTTTT-CTTGT
* * * * *
8420981 AAATGGATGGCTTTCGCTTCATGTTT-CTAAGTCAAACATCCAATTATGAT-TCATTTTAATAAA
189 CAATGGATGACTTTTGCTTCATGTTTCCTAAGGCAAACATCCAATTATGATCT-ATTTTAACAAA
* * * * * *
8421044 AAATGAAAAAAA-TCTATTTAAAATTATTTTTAA-AGTTATAAAATCGATTAAAGCGAGTAACTA
253 AAATAAAAAAAATTCAACTTAAAATCATTTATAAGA-TTATAAAA-CTATTAAAGCGAGTAACTA
* * *
8421107 -GACTTTTGAAGGCATGAATGG-CT
316 GGA--TTTCAAAGTATGAATGGACT
* * * **
8421130 ATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCATGTTTCTTGAGGCAAACATCCAATT
1 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATCCAATT
* * * *
8421195 ATGATATGTTTTAATGAAAAATGAAAAAGAATTCAACTTAAAATTATTTATAAAATTATAAAACC
66 ATGATCTGTTTTAA-CAAAAATGAAAAA-AATTCAACTTAAAATCATTTATAAGATTATAAAACC
* * * * * * * *
8421260 ATTTAAATTGGGTAACTAGTATTCCGAAGGTATGAGTGACAATAAATAGACTTTTCATGTGAATG
129 ATTTAAAGTGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATG
* * * * * * * **
8421325 GAT-AGCTTTTGCTTTAAGTTTTC-AGATGCAAACATTCAATTATAAACCGTTTTAACAAAAAAT
194 GATGA-CTTTTGCTTCATGTTTCCTA-AGGCAAACATCCAATTATGATCTATTTTAACAAAAAA-
* * * * *
8421388 TAAAAAAAA---AACTTTAAAATCATTTATAAGAGTAGAAAATCTTTTAAAGCGACTAACTAGTA
256 TAAAAAAAATTCAAC-TTAAAATCATTTATAAGATTATAAAA-CTATTAAAGCGAGTAACTAGGA
* *
8421450 TTTCGAACA-TATGAGTGG-CC
319 TTTC-AA-AGTATGAATGGACT
* * ** * * *
8421470 GTAAATGGACTTTGT-TTATCAGCGAATGGCTTTTGCTTCACGTTTC-CTAAGGCAAACATTCAA
1 ATAAATGGACTTT-TCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-AAGGCAAACATCCAA
* * * *
8421533 TTACGATGTATTTTAACAAAAACTGAAAAAAA-ACTAACTTAAAATCATTTATAAGATTATAAAA
64 TTATGATCTGTTTTAACAAAAA-TGAAAAAAATTC-AACTTAAAATCATTTATAAGATTATAAAA
* * * ** * * * * * *
8421597 CTATTGACAGTGAGTAACTAGGCTTCCAAAGGTATCAATGGCTATAAATGGACTTTTCTTGTCAA
127 CCATTTAAAGTGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAA
* * ** * *
8421662 TGGATGGCTTTTGCTTTATGTTTATTGAGGAAAACATCCAATTATGATCTATTTTAACAAAAAA-
192 TGGATGACTTTTGCTTCATGTTTCCTAAGGCAAACATCCAATTATGATCTATTTTAACAAAAAAT
* * * * * * * **
8421726 AGAAAAAAATGCAGCTTAAAATCAGTTATAAGTTTATAAAACCATTTAAATC-AGGTAATTATTA
257 A-AAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTA-TTAAAGCGA-GTAACTAGGA
* * * *
8421790 ATTCGAAGGTGTGAGT-GACT
319 TTTC-AAAGTATGAATGGACT
* * * *
8421810 ATAAATGAACTTTTCTTGTCAATGGATAGCTTTCGCTTCACATTT-TCAGAGGCAAACATCTAAT
1 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCA-AGGCAAACATCCAAT
* ***
8421874 TATGAAT-TGTTTTAACCAAAAATAAAAAAACAATTCAAGACAAAATCATTTATAAGATTATAAA
65 TATG-ATCTGTTTTAA-CAAAAAT-GAAAAA-AATTCAACTTAAAATCATTTATAAGATTATAAA
* * * * * * *
8421938 ACCATTTAAAGCGACTAAGTAGTATTTCGAAA-GCAGGAGTAACTATAAATGGA-TCTTTCTTAT
126 ACCATTTAAAGTGAGTAACTAGTATTTC-AAAGGCATGAGTGACTATAAATAGACT-TTTCTTGT
* * * ** * * * * *
8422001 CAATGGATGGCTTTCGCTTCACGTTT-CTCAAGAAAAATATCTAATTATGATATGTTTTAAC-GA
189 CAATGGATGACTTTTGCTTCATGTTTCCT-AAGGCAAACATCCAATTATGATCTATTTTAACAAA
** ** * * * *
8422064 AAAT--GGACCATTTAAGTTAAAATCATTTATAAAACTGAAAATTAAAAAGAATTTAAGTTAAAA
253 AAATAAAAAAAATTCAACTTAAAATCATTTAT--AA--G---ATT-ATAA-AA-CT-A-TT-AAA
* * * * * * * * *
8422127 TC-ATTTA-TAAGATTATAAAACTATTTAA-AG-CA
305 GCGAGTAACTAGGATT-TCAAAGTA-TGAATGGACT
* * * ** * * * * *** ** ** ** * *
8422159 ACAAAT-TAGTATTTCGAAGGC-ATGAATGACTATAAATGGAC-TTT-TCTTGTTAATAGAT--G
1 ATAAATGGACT-TTTC-TTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGCAA-ACATCCA
* * * ** ** * * * * ** * * *
8422218 GTTTTCGCTTCACTTTT--C-CCAAGGCAAACAA--CAAATTATTATCTGTTTTAACAAAAAATA
63 ATTAT-G-ATCTGTTTTAACAAAAATGAAAAAAATTCAACTTAAAATC--ATTT---ATAAGAT-
* * * * * * ** ** * *
8422278 AAAAAAATCAATTTAAA-TTATTTA-TAAAATTAT-AAAATCACTAAAAGT-A--AGAAATTA-A
120 TATAAAA-CCATTTAAAGTGAGTAACTAGTATT-TCAAAGGCA-T--GAGTGACTATAAA-TAGA
** * * * * * * *
8422336 GC-TTTCGAAGGC-GT-GAGTGACTATAAATGGACTT--T-TCTTACAAATGG-ATAGCTTTCC-
179 -CTTTTC-TTGTCAATGGA-TGACT-T---TTG-CTTCATGT-TTCCTAA-GGCA-AAC-ATCCA
* * * ** * * ****** *** * * *
8422393 CTTCACAGTTCTCAGGGTAAACATCCAATTATGATCTTTTTTAAGAGAAATAAAAAAATATATTT
232 ATT-A-TGATCT-A-TTTTAACA---AA--A-AAT-AAAAAAAATTCAACT--TAAAAT-CATTT
* * * ** * * * * * * *
8422458 AAAATCTATTTTAAAGTTATGAAATCACTTTGAGCAAATAACT-CGATTTGTGAAGGCATGCATG
283 ATAA--GATTATAAAACTATTAAA--GC---GAG----TAACTAGGA-TT-TCAAAGTATGAATG
8422522 G-CT
335 GACT
* ** * * * *
8422525 ATAAATGGACATTTCTCATCGATGGATGGCTTTTC-CTTCACATTT-TCCAAGGTAAACATCTAA
1 ATAAATGGACTTTTCTTGTCAATGGATGGC-TTTCGCTTCACGTTTCT-CAAGGCAAACATCCAA
* * * *
8422588 TTATGAACTGTTTTAACCAAAAAGGAAAAAAAATTCAACTCAAAATCATTGATAAGATTATAAAA
64 TTATGATCTGTTTTAA-CAAAAATG-AAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAA
* * * * * * *
8422653 CCATTAAAAGCGACTAACTAGTATTTCGAAGGCATAAGTGACCATAAATGGACTTTTCTTGTC--
127 CCATTTAAAGTGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAA
** * * *
8422716 ---AT--C---TAATT-ATG-AT-C--A-G-AAATATCTAATTATGATCTATTTTAACAAAATAA
192 TGGATGACTTTTGCTTCATGTTTCCTAAGGCAAACATCCAATTATGATCTATTTTAACAAAA-AA
* * * * * *
8422766 TGAACAAAATTGAACTTAAAATCATTTATAAGATTATAAAACTATTAAAAGTGCGTAACTAGGCT
256 TAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTATT-AAAGCGAGTAACTAGGAT
* *
8422831 TTTAAAGGCATGAATGG-CT
320 TTCAAA-GTATGAATGGACT
* * ** *
8422850 ATAAATAGACTTTTCTTGTCAATGAATGGCTTTCGTCTT-ACGTTTCTGGATGCAAACATCCAAT
1 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCG-CTTCACGTTTCTCAAGGCAAACATCCAAT
* * * ** *
8422914 TATGATCTGTTTTAATGAAACATGAAAAAAATTCAATTTAAAATCATTTATAAGATTGGAAAACT
65 TATGATCTGTTTTAA-CAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACC
* * * * * *
8422979 ATTTAAA-TCGAGGTAACTAGTATTTTAAAGGTATGAATGACTATAAATGGACTTTTCTTATTAA
129 ATTTAAAGT-GA-GTAACTAGTATTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAA
* ** * *
8423043 TGGATGGCTTTCACTTTACT-TTT-CTAGAGGCAAACATCCAATTATGATCTTTTTTAACAAAAA
192 TGGATGACTTTTGCTTCA-TGTTTCCTA-AGGCAAACATCCAATTATGATCTATTTTAACAAAAA
* * *
8423106 ATGAAAAAAAAATT-AACTTGAAATCA-TTATAAGATTATAAAACTACTTAAAGCGAATAATTAG
255 AT--AAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTA-TTAAAGCGAGTAACTAG
* * * *
8423169 GCTTTCGAGGACATGAAT-GACT
317 GATTTCAAAG-TATGAATGGACT
*** * * * * * * * **
8423191 ATAAATATCCTTTTCTTATCAATTGATGGCTTTCGCTTTATGTTTTTCAATGTAAACATGAAATT
1 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATCCAATT
* * * * * * *
8423256 ATGATATGTTTCTACAAAAAAATGAAAACAATT-TATTTAAAATCATTTTTAA-AGTTATAAAAT
66 ATGATCTGTTT-TA-ACAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGA-TTATAAAAC
* * ** * * * * *
8423319 CACTTAAGGTGAGTAACTAGGCTTTCGAAGGCATGAGTTACTGTAAAT-GAACCTTTGTTG-CAA
128 CATTTAAAGTGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATAG-ACTTTTCTTGTC-A
* * * ** * * * **
8423382 ATAGAT-AGTTTTCACTTCACATTTCTTAAGGAAAACATCCAATTATGATCTATGTTAATGAAAA
191 ATGGATGACTTTT-GCTTCATGTTTCCTAAGGCAAACATCCAATTATGATCTATTTTAACAAAAA
* * * * ** * ** *
8423446 ACAAAAAAACA-TCAATTTAAAATTATTTTTAA-AGTTATAAAATCGGTAAAAGTTAGTGACTA-
255 ATAAAAAAA-ATTCAACTTAAAATCATTTATAAGA-TTATAAAA-CTATTAAAGCGAGTAACTAG
* * *
8423508 GATTTTTGAAAGCATCG-GTGG-CT
317 GA--TTTCAAAGTAT-GAATGGACT
* * * * * * *
8423531 ATAAATGAAATTTTCTTGTCAAAGGATGGCTATCACTTCACGTTTTTTAAGGCAAACATCCAATT
1 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATCCAATT
* * * *
8423596 ATAATTTATTTT------AATAAAAAAAATT-AACTTAAAATCATTTATAAGATTATAAAACCAT
66 ATGATCTGTTTTAACAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCAT
* * * * * * * * *
8423654 TCAAA-TCGGGTAACTAGCATTTCGAAGGCATAATTGA-TAATAAATGGACTTTTATTATCAATG
131 TTAAAGT-GAGTAACTAGTATTTCAAAGGCATGAGTGACT-ATAAATAGACTTTTCTTGTCAATG
* * * * ** * * * *
8423717 GATGGCTTTTGTTTCACGTTTTTCT-AGAAAAACATCCAATTACGATCTGTTTTAACGAAGAATG
194 GATGACTTTTGCTTCATG-TTTCCTAAGGCAAACATCCAATTATGATCTATTTTAACAAAAAAT-
* * * * * * *
8423781 AAAAAAGATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTCAATCGGGTAGCTAGTATT
257 AAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTA-TTAAAGCGAGTAACTAGGATT
* *
8423846 TCAAAGGCATGAGTGG-CT
321 TCAAA-GTATGAATGGACT
* * * * * * *
8423864 ATAGATAGACTTTTCTTATCAATGAATGGCTTTCGTTTCATGTTTCTCGAGGCAAACATCCAATT
1 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATCCAATT
* * * * * *
8423929 ATAAACTGTTTTAACTAAAAATGAAAAAAA---AGCCTAAAATCATTTAAAAGATTATAAAACTA
66 ATGATCTGTTTTAAC-AAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCA
* * * * *
8423991 TTTAAAG-GAACTAACTAGTATTTCAAACGCATGAGTGACTATAAATAGACTTTTCTTATGAGT-
130 TTTAAAGTG-AGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATG
* * * * * *
8424054 GACTGATTTTTGCTTTACGTTTTCTAAGGCAAACATCCAATTATGATCTATTTTAACCAAAAATG
194 GA-TGACTTTTGCTTCATGTTTCCTAAGGCAAACATCCAATTATGATCTATTTTAACAAAAAATA
* * ** * *
8424119 AGAAAACTTCAACTTAAAATCATTTATAAGATTATAAAGTTATTGAAAGCGGGTAACTAAGATTT
258 AAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTATT-AAAGCGAGTAACTAGGATTT
* **
8424184 CAAAGGCATGAAAAG-CT
322 CAAA-GTATGAATGGACT
* * * **
8424201 ATAAATGGACTTTTTTTGTCAATGGATGGCTTTCGTTTCATGTTTCTTGAGGCAAACATCCAATT
1 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATCCAATT
* * * * * *
8424266 ATGATCTATTTTAAC------CAAAAAAATGT-AACTTAAAATC-TGTTTTGAGTTTGTAAAACC
66 ATGATCTGTTTTAACAAAAATGAAAAAAAT-TCAACTTAAAATCAT-TTATAAGATTATAAAACC
* * * *
8424323 ATTTAAA-TTAGGTAACTATTATTTCAAAGGCATGAGTGACTATAAATGGACTTCTCTTG-CTAA
129 ATTTAAAGTGA-GTAACTAGTATTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTC-AA
** * * * * *
8424386 CAGATGCCTTTTGGTTCATGTTT-TTAGAGGCAAACATCCAATTATGAACTATTTTAACCAAAAA
192 TGGATGACTTTTGCTTCATGTTTCCTA-AGGCAAACATCCAATTATGATCTATTTTAACAAAAAA
* * * ** * * *
8424450 TGAAAAAAAATT-AAATTAAAATTATTTATAAGATTATAAAATTATTTCTAGTGACTAACTAGTA
256 T-AAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTA-TTAAAGCGAGTAACTAGGA
* *
8424514 TTTCGAAGATATGAGT-GACT
319 TTTCAAAG-TATGAATGGACT
* * * * * * ** *
8424534 ATAAATGGA-TTCTTTTTCTCAATAGATGGCTTTCGTTTTACGTTTCACAAGTTAAACATCCAAG
1 ATAAATGGACTT-TTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATCCAAT
* * * *
8424598 TATGAACTATTTTAACTAAATATAGAAAAGAATTCAACTTAAAATCATTTATAAGATTATAAAAC
65 TATGATCTGTTTTAAC-AAAAAT-GAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAAC
* * * * * * * *
8424663 CATTTAAAGCGACTAATTAGTAATATGAAA-GTATGAGTGACTATAAATGGACTTTTCTTGTGAA
128 CATTTAAAGTGAGTAACTAGT-ATTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAA
* * * * * * * * * *
8424727 TGGATG-GTTTCGTTTCACT-TTTCATGAGGTAAACAGCAAATTATGATATATTTTAACAAAATA
192 TGGATGACTTTTGCTTCA-TGTTTCCTAAGGCAAACATCCAATTATGATCTATTTTAACAAAAAA
* * *
8424790 TAAAGAAAAA-TCAATTTAAAATCATTTATAACATTATAAAA-TCACTTAAAGCGAGTAACTAAG
256 TAAA-AAAAATTCAACTTAAAATCATTTATAAGATTATAAAACT-A-TTAAAGCGAGTAACTAGG
* * * *
8424853 CTTTCGAAGGCATGAGT-GACT
318 ATTTC-AAAGTATGAATGGACT
* * * * * * *** *
8424874 ATAAATGGACTTTCCTT-ACAAATGGATAGCCTTC-CTTTCACATTTCCCAACATAAACGTCCAA
1 ATAAATGGACTTTTCTTGTC-AATGGATGGCTTTCGC-TTCACGTTTCTCAAGGCAAACATCCAA
* * * * * * *
8424937 TTATGATTTATTTTAATGAAATAT-AGAAAAAA-TCAATTTAAAATTATTTTTAA-AGTTATAAA
64 TTATGATCTGTTTTAA-CAAAAATGA-AAAAAATTCAACTTAAAATCATTTATAAGA-TTATAAA
* ** * ** * * * * *
8424999 ATCACATAAA---A-TTA-TTTTA-ATGAAA-GTATGAGTGACTATAAATGGACATTTCTTGTCA
126 ACCATTTAAAGTGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCA
** ** * * * * * * * *
8425057 ATGGAT-AGCTTTCACTTCACATTTCCCAATGTAAACATCTAATTATGAACTGTTTTAACTAAAG
191 ATGGATGA-CTTTTGCTTCATGTTTCCTAAGGCAAACATCCAATTATGATCTATTTTAACAAAAA
* * * **
8425121 ATGGAAAATATTTCAACTTAAAATCATTTATAAGATTATAAAACTATTAAAAGCGAGTAACTAAT
255 AT-AAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTATT-AAAGCGAGTAACTAGG
* * * *
8425186 ATTTTGAAGGCATGAGT-GACT
318 A-TTTCAAAGTATGAATGGACT
* * * * * * *
8425207 ATAAATAGATTTTTCTTGTCTATGGATGACTTTCGCTTCACATTTCTCTAGGCAAACATCCAAGT
1 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATCCAATT
* * * * * *
8425272 ATAAACTGTTTTAACCAAAAATGAAAGAGAATTTAACTTAAAATCATTTATAAGATTGTAGAACC
66 ATGATCTGTTTTAA-CAAAAATGAAA-AAAATTCAACTTAAAATCATTTATAAGATTATAAAACC
** * * * * *
8425337 ATTTAAAGCAACTAATTAGTATTTCGAAGAC-TGAGTGACTATAAATAGACTTTTCTTGTCAATA
129 ATTTAAAGTGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATG
* * * * * * * * *
8425401 GATGGCTTTCGCTTCACTTGTTT--TGAGGTAAACAACAAATTATTATCTGTTTTAATAAAAAA-
194 GATGACTTTTGCTTCA--TGTTTCCTAAGGCAAACATCCAATTATGATCTATTTTAACAAAAAAT
* * * *
8425463 ATAAAAAAACTCAATTTAAAATCA-TTATAAGATTATAAAA-TCACTTAAAGCGAGTAACTAAGC
257 A-AAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACT-A-TTAAAGCGAGTAACTAGGA
* * *
8425526 TTTCGAATGTATGAGT-AACT
319 TTTC-AAAGTATGAATGGACT
* * * * *
8425546 ATAAATAGACTTTT-TT-TACAAATGGATGGTTTTTGCTTCACGTTTCCCAAGGTAAACATCCAA
1 ATAAATGGACTTTTCTTGT-C-AATGGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATCCAA
* * * * * * * *
8425609 TCATGATCTGTTTTAAGGAAAAATTAAAAAAA-TAAATTTAAAATTA-TTATTGAA-TTTAGAAA
64 TTATGATCTGTTTTAA-CAAAAATGAAAAAAATTCAACTTAAAATCATTTA-T-AAGATTATAAA
* * ** * ** ** * * *
8425671 ATCACTTAAAGCAAGTAATTAGGCTTTTGAAGGTATGAGTGACTGTAAAT-GCCCATTTT-TTGT
126 ACCATTTAAAGTGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATAG-AC-TTTTCTTGT
* * * *
8425734 CAGTGGATGACTTTTGTTTCACAT-TTTCC-AAGGCAAACATCCAATTATGAACTATTTTAACTA
189 CAATGGATGACTTTTGCTT--CATGTTTCCTAAGGCAAACATCCAATTATGATCTATTTTAACAA
*
8425797 AAAATGAAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTAGTTAAAGCGACTAAC
252 AAAAT--AAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTA-TTAAAGCGAGTAAC
* * * * *
8425862 TAGTATTTTGAAGGTATGAGT-GACC
314 TAGGA-TTTCAAAGTATGAATGGACT
* * *** * *
8425887 ATAAATAGACTTTT-TCTGTGAATGG-TTTTTTTTGCTTC-CTGTTTC-CTAAGGTAAACATCCA
1 ATAAATGGACTTTTCT-TGTCAATGGATGGCTTTCGCTTCAC-GTTTCTC-AAGGCAAACATCCA
* * *
8425948 ATTATGATCTATTTTAATAAAAAATGAATAAAATTCAACTTAAAATCATTTATAAGATTATAAAA
63 ATTATGATCTGTTTTAA-CAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAA
* * ** * ** * * * * *
8426013 CTATTGACAA-CAAGTAATTAGGCTTTTAAAAGCATGAATGGCTATAAATGGACTTTTCTTGTCA
127 CCATTTA-AAGTGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCA
* * * * * * * * * *
8426077 ATGGATGGCTTTCGCCTCATGTTTCTTGATGTAAACATCCAATTATGATCTGTTTTAAC-GAAGA
191 ATGGATGACTTTTGCTTCATGTTTCCTAAGGCAAACATCCAATTATGATCTATTTTAACAAAAAA
* * * * * * * *
8426141 TGAAAAAAATTCAACTTAAAATCATTTATAAGATTAGAAAACCATTTAAATCGGGGCAACGAGTA
256 TAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTA-TTAAAGC-GAGTAACTAGGA
* * *
8426206 TTTCAAAGGCACGAGT-GACT
319 TTTCAAA-GTATGAATGGACT
* * * * * * *
8426226 ATAAATGGACTTTTCTTATTAATGAATGGCTTTCACTTCACTTTTCT-AGAGGCAAACATCTAAC
1 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCA-AGGCAAACATCCAAT
* * * ** *
8426290 TAAGATCTATTTTGACAAAAAATGAAAAATAAATTCAACTTAAAATTTTTTATAAGAATATAAAA
65 TATGATCTGTTTTAAC-AAAAATG-AAAA-AAATTCAACTTAAAATCATTTATAAGATTATAAAA
* * ** * ** ** * * * *
8426355 TCACTTAAAGCAAGTAATTAGGCTTTTGAAGGCATGAATGACTATAAATGGCCTTTCCTTGTCAA
127 CCATTTAAAGTGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAA
* * * * * * * * *
8426420 TTGATGGCTTTCGCTTCGTAT-TTTCC-AATGTAAACATCAAATTATGATTTATTTCAACAAAAG
192 TGGATGACTTTTGCTTC--ATGTTTCCTAAGGCAAACATCCAATTATGATCTATTTTAACAAAAA
* * * * *
8426483 GTGAAAAAAAA-TCAA-TTCAAAATCTTTTTTCAAG-TTATAAAA-TCACTTAAGGTGAGTAACT
255 AT-AAAAAAAATTCAACTT-AAAATCATTTAT-AAGATTATAAAACT-A-TTAAAGCGAGTAACT
* * * *
8426544 AGGCTTTCGAAAGTTTGAGT-CACT
315 AGGATTTC-AAAGTATGAATGGACT
** * * * * ** * *
8426568 ATAAATGGACTTTTGC-AATAAATGGATAGC-TTCACTTCACATTTCTTGAGGCAAATAACCAAT
1 ATAAATGGACTTTT-CTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATCCAAT
*
8426631 TATGATTTGTTTTAA
65 TATGATCTGTTTTAA
8426646 TGGCAAATGA
Statistics
Matches: 6967, Mismatches: 1717, Indels: 1041
0.72 0.18 0.11
Matches are distributed among these distances:
317 1 0.00
318 4 0.00
319 250 0.04
320 1 0.00
323 2 0.00
324 51 0.01
325 121 0.02
326 16 0.00
327 132 0.02
328 226 0.03
329 33 0.00
330 97 0.01
331 54 0.01
332 191 0.03
333 501 0.07
334 28 0.00
335 105 0.02
336 167 0.02
337 377 0.05
338 645 0.09
339 704 0.10
340 1228 0.18
341 1044 0.15
342 512 0.07
343 116 0.02
344 25 0.00
345 28 0.00
346 21 0.00
347 21 0.00
348 27 0.00
349 37 0.01
350 17 0.00
351 10 0.00
353 5 0.00
354 3 0.00
355 4 0.00
356 1 0.00
357 3 0.00
358 2 0.00
359 2 0.00
360 4 0.00
361 4 0.00
362 1 0.00
363 4 0.00
364 3 0.00
365 13 0.00
366 37 0.01
367 23 0.00
368 20 0.00
369 26 0.00
370 1 0.00
371 4 0.00
372 7 0.00
374 8 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.34
Consensus pattern (338 bp):
ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATCCAATT
ATGATCTGTTTTAACAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCAT
TTAAAGTGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGA
TGACTTTTGCTTCATGTTTCCTAAGGCAAACATCCAATTATGATCTATTTTAACAAAAAATAAAA
AAAATTCAACTTAAAATCATTTATAAGATTATAAAACTATTAAAGCGAGTAACTAGGATTTCAAA
GTATGAATGGACT
Found at i:8422826 original size:154 final size:154
Alignment explanation
Indices: 8422582--8422870 Score: 377
Period size: 154 Copynumber: 1.9 Consensus size: 154
8422572 CAAGGTAAAC
* *
8422582 ATCTAATTATGAACTGTTTTAACCAAAAAGGAAAAAAAATTCAACTCAAAATCATTGATAAGATT
1 ATCTAATTATGAACTATTTTAACAAAAAAGGAAAAAAAATTCAACTCAAAATCATTGATAAGATT
* * *
8422647 ATAAAACCATTAAAAGCGACTAACTAGTATTTCGAAGGCAT-AAGTGACCATAAATGGACTTTTC
66 ATAAAACCATTAAAAGCGACTAACTAGGATTTCAAAGGCATGAA-TGACCATAAATAGACTTTTC
8422711 TTGTCATCTAATTATGATCAGAAAT
130 TTGTCATCTAATTATGATCAGAAAT
* * * * * *
8422736 ATCTAATTATGATCTATTTTAACAAAATAATG-AACAAAATTGAACTTAAAATCATTTATAAGAT
1 ATCTAATTATGAACTATTTTAACAAAA-AAGGAAAAAAAATTCAACTCAAAATCATTGATAAGAT
* * * * * *
8422800 TATAAAACTATTAAAAGTG-CGTAACTAGGCTTTTAAAGGCATGAATGGCTATAAATAGACTTTT
65 TATAAAACCATTAAAAGCGAC-TAACTAGGATTTCAAAGGCATGAATGACCATAAATAGACTTTT
8422864 CTTGTCA
129 CTTGTCA
8422871 ATGAATGGCT
Statistics
Matches: 115, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
153 1 0.01
154 109 0.95
155 5 0.04
ACGTcount: A:0.43, C:0.13, G:0.12, T:0.32
Consensus pattern (154 bp):
ATCTAATTATGAACTATTTTAACAAAAAAGGAAAAAAAATTCAACTCAAAATCATTGATAAGATT
ATAAAACCATTAAAAGCGACTAACTAGGATTTCAAAGGCATGAATGACCATAAATAGACTTTTCT
TGTCATCTAATTATGATCAGAAAT
Found at i:8424486 original size:333 final size:331
Alignment explanation
Indices: 8422740--8426311 Score: 1562
Period size: 333 Copynumber: 10.6 Consensus size: 331
8422730 AGAAATATCT
* * *
8422740 AATTATGATCTATTTTAACAAAATAATG-AACAAAATTGAACTTAAAATCATTTATAAGATTATA
1 AATTATGATCTATTTTAACCAAA-AATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATA
* * * * ** * ** *
8422804 AAACTATTAAAAGTGCGTAACTAGGCTTTTAAAGGCATGAATGGCTATAAATAGACTTTTCTTGT
65 AAATTATTGAAAGCGGGTAACTAGTATTTCAAAGGCATGAAAAGCTATAAATGGACTTTTCTTGT
* * * * * *
8422869 CAATGAATGGCTTTCGTCTT-ACGTTTCTGGATGCAAACATCCAATTATGATCTGTTTTAATGAA
130 CAATGGATGGCTTTCGT-TTCATGTTTCTTGAGGCAAACATCCAATTATAATCT-ATTT--T--A
* ** *
8422933 ACATGAAAAAAATTCAATTTAAAATCATTTATAAGATTGGAAAACTATTTAAATCGAGGTAACTA
189 ACA--AAAAAAATT-AACTTAAAATCATTTATAAGATTATAAAACCATTTAAATC-AGGTAACTA
* * * ** * ** *
8422998 GTATTTTAAAGGTATGAATGACTATAAATGGACTTTTCTTATTAATGGATGGCTTTCACTTTAC-
250 GTATTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTA-TAACAGATGACTTTTGCTTCACG
8423062 TTTTCTAGAGGCAAACATCC
314 TTTT-TA-AGGCAAACATCC
* * *
8423082 AATTATGATCTTTTTTAACAAAAAATGAAAAAAAAATT-AACTTGAAATCA-TTATAAGATTATA
1 AATTATGATCTATTTTAACCAAAAATG-AAAAAAAATTCAACTTAAAATCATTTATAAGATTATA
* ** * ** * * ***
8423145 AAACTACTT-AAAGCGAATAATTAGGCTTTC-GAGGACATG-AATGACTATAAATATCCTTTTCT
65 AAATTA-TTGAAAGCGGGTAACTAGTATTTCAAAGG-CATGAAAAG-CTATAAATGGACTTTTCT
* * * * * ** * * *
8423207 TATCAATTGATGGCTTTCGCTTT-ATGTTT-TTCAATGTAAACATGAAATTATGATATGTTTCTA
127 TGTCAATGGATGGCTTTCG-TTTCATGTTTCTT-GAGGCAAACATCCAATTATAATCTATTT-T-
* * * * * * * *
8423270 CAAAAAAATGAAAACAATTTATTTAAAATCATTTTTAA-AGTTATAAAATCACTTAAGGTGA-GT
188 ---AACAA--AAAA-AATTAACTTAAAATCATTTATAAGA-TTATAAAACCATTTAA-ATCAGGT
** * * * * * * * * *
8423333 AACTAGGCTTTCGAAGGCATGAGTTACTGTAAATGAACCTTTGTTGCA-AATAGAT-AGTTTTCA
245 AACTAGTATTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTT--ATAACAGATGACTTTT-G
* *
8423396 CTTCACATTTCTTAAGGAAAACATCC
307 CTTCACGTTT-TTAAGGCAAACATCC
* ** * * * *
8423422 AATTATGATCTATGTTAATGAAAAA-CAAAAAAACA-TCAATTTAAAATTATTTTTAA-AGTTAT
1 AATTATGATCTATTTTAACCAAAAATGAAAAAAA-ATTCAACTTAAAATCATTTATAAGA-TTAT
*** * *** * * * *** * *
8423484 AAAATCGGTAAAAGTTAGTGACTAGATTTTTGAAA-GCATCG-GTGGCTATAAATGAAATTTTCT
64 AAAATTATTGAAAGCGGGTAACTAG-TATTTCAAAGGCAT-GAAAAGCTATAAATGGACTTTTCT
* * ** * * * * *
8423547 TGTCAAAGGATGGCTATCACTTCACGTTTTTTAAGGCAAACATCCAATTATAATTTATTTTAATA
127 TGTCAATGGATGGCTTTCGTTTCATGTTTCTTGAGGCAAACATCCAATTATAATCTATTTTAACA
* * *
8423612 AAAAAAATTAACTTAAAATCATTTATAAGATTATAAAACCATTCAAATCGGGTAACTAGCATTTC
192 AAAAAAATTAACTTAAAATCATTTATAAGATTATAAAACCATTTAAATCAGGTAACTAGTATTTC
* * * * ** * *
8423677 GAAGGCATAATTGA-TAATAAATGGACTTTTATTATCAATGGATGGCTTTTGTTTCACGTTTTTC
257 AAAGGCATGAGTGACT-ATAAATGGACTTTTCTTAT-AACAGATGACTTTTGCTTCACGTTTTT-
* **
8423741 TAGAAAAACATCC
319 AAGGCAAACATCC
* * * * *
8423754 AATTACGATCTGTTTTAACGAAGAATGAAAAAAGATTCAACTTAAAATCATTTATAAGATTATAA
1 AATTATGATCTATTTTAACCAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAA
** ** * * *** * * *
8423819 AACCATTTCAATCGGGTAGCTAGTATTTCAAAGGCATGAGTGGCTATAGATAGACTTTTCTTATC
66 AATTATTGAAAGCGGGTAACTAGTATTTCAAAGGCATGAAAAGCTATAAATGGACTTTTCTTGTC
* * * *
8423884 AATGAATGGCTTTCGTTTCATGTTTCTCGAGGCAAACATCCAATTATAAACTGTTTTAACTAAAA
131 AATGGATGGCTTTCGTTTCATGTTTCTTGAGGCAAACATCCAATTATAATCTATTTTAAC--AAA
** * * * ** **
8423949 ATGAAAAAAAAGCCTAAAATCATTTAAAAGATTATAAAACTATTTAAAGGAACTAACTAGTATTT
194 A--AAAATTAA-CTTAAAATCATTTATAAGATTATAAAACCATTTAAATCAGGTAACTAGTATTT
* * * ** * *
8424014 CAAACGCATGAGTGACTATAAATAGACTTTTCTTATGAGTGACTGATTTTTGCTTTACGTTTTCT
256 CAAAGGCATGAGTGACTATAAATGGACTTTTCTTATAACAGA-TGACTTTTGCTTCACGTTTT-T
8424079 AAGGCAAACATCC
319 AAGGCAAACATCC
* *
8424092 AATTATGATCTATTTTAACCAAAAATG-AGAAAACTTCAACTTAAAATCATTTATAAGATTATAA
1 AATTATGATCTATTTTAACCAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAA
* *
8424156 AGTTATTGAAAGCGGGTAACTAAG-ATTTCAAAGGCATGAAAAGCTATAAATGGACTTTTTTTGT
66 AATTATTGAAAGCGGGTAACT-AGTATTTCAAAGGCATGAAAAGCTATAAATGGACTTTTCTTGT
* *
8424220 CAATGGATGGCTTTCGTTTCATGTTTCTTGAGGCAAACATCCAATTATGATCTATTTTAACCAAA
130 CAATGGATGGCTTTCGTTTCATGTTTCTTGAGGCAAACATCCAATTATAATCTATTTTAACAAAA
* * * * * *
8424285 AAAATGTAACTTAAAATC-TGTTTTGAGTTTGTAAAACCATTTAAATTAGGTAACTATTATTTCA
195 AAAAT-TAACTTAAAATCAT-TTATAAGATTATAAAACCATTTAAATCAGGTAACTAGTATTTCA
* * * * *
8424349 AAGGCATGAGTGACTATAAATGGACTTCTCTTGCTAACAGATGCCTTTTGGTTCATGTTTTTAGA
258 AAGGCATGAGTGACTATAAATGGACTTTTCTT-ATAACAGATGACTTTTGCTTCACGTTTTTA-A
8424414 GGCAAACATCC
321 GGCAAACATCC
* * *
8424425 AATTATGAACTATTTTAACCAAAAATGAAAAAAAATT-AAATTAAAATTATTTATAAGATTATAA
1 AATTATGATCTATTTTAACCAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAA
*** * ** * ** ** * *
8424489 AATTATTTCTAGTGACTAACTAGTATTTCGAAGATATG-AGTGACTATAAATGGA-TTCTTTTTC
66 AATTATTGAAAGCGGGTAACTAGTATTTCAAAGGCATGAAAAG-CTATAAATGGACTT-TTCTTG
* * * *** ** *
8424552 TCAATAGATGGCTTTCGTTTTACGTTTCACAAGTTAAACATCCAAGTATGAA-CTATTTTAACTA
129 TCAATGGATGGCTTTCGTTTCATGTTTCTTGAGGCAAACATCCAATTAT-AATCTATTTTAAC--
* * *
8424616 AATATAGAAAAGAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGC-GACTAAT
191 ---A-A-AAAA-AATT-AACTTAAAATCATTTATAAGATTATAAAACCATTTAAATCAG-GTAAC
* * * * ** * * *
8424680 TAGTAATATGAAA-GTATGAGTGACTATAAATGGACTTTTCTTGTGAATGGATG-GTTTCGTTTC
248 TAGT-ATTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTAT-AACAGATGACTTTTGCTTC
* * * *
8424743 AC-TTTTCATGAGGTAAACAGCA
311 ACGTTTT--TAAGGCAAACATCC
* * *
8424765 AATTATGATATATTTTAA-CAAAATAT-AAAGAAAAA-TCAATTTAAAATCATTTATAACATTAT
1 AATTATGATCTATTTTAACCAAAA-ATGAAA-AAAAATTCAACTTAAAATCATTTATAAGATTAT
* * * * ** *
8424827 AAAATCACTT-AAAGCGAGTAACTAAG-CTTTCGAAGGCATG-AGTGACTATAAATGGACTTTCC
64 AAAATTA-TTGAAAGCGGGTAACT-AGTATTTCAAAGGCATGAAAAG-CTATAAATGGACTTTTC
* * * * ** *** *** * * *
8424889 TT-ACAAATGGATAGCCTTCCTTTCACATTTCCCAACATAAACGTCCAATTATGATTTATTTTAA
126 TTGTC-AATGGATGGCTTTCGTTTCATGTTTCTTGAGGCAAACATCCAATTATAATCTA-TTT--
* * * * * * ** *
8424953 TGAAATATAGAAAAAATCAATTTAAAATTATTTTTAA-AGTTATAAAATCACATAAA--A--TTA
187 T--AACA-A-AAAAAATTAACTTAAAATCATTTATAAGA-TTATAAAACCATTTAAATCAGGTAA
** * * * * * ** **
8425013 -TTTTA-ATGAAA-GTATGAGTGACTATAAATGGACATTTCTTGTCAATGGAT-AGCTTTCACTT
247 CTAGTATTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTAT-AACAGATGA-CTTTTGCTT
* ** * * *
8425074 CACATTTCCCAATGTAAACATCT
310 CACGTTT-TTAAGGCAAACATCC
* * * * * * *
8425097 AATTATGAACTGTTTTAACTAAAGATGGAAAATATTTCAACTTAAAATCATTTATAAGATTATAA
1 AATTATGATCTATTTTAACCAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAA
* * * * ** ** * *
8425162 AACTATTAAAAGCGAGTAACTAATATTTTGAAGGCATG-AGTGACTATAAATAGATTTTTCTTGT
66 AATTATTGAAAGCGGGTAACTAGTATTTCAAAGGCATGAAAAG-CTATAAATGGACTTTTCTTGT
* * * ** * * *
8425226 CTATGGATGACTTTCGCTTCACATTTCTCT-AGGCAAACATCCAAGTATAAACTGTTTTAACCAA
130 CAATGGATGGCTTTCGTTTCATGTTTCT-TGAGGCAAACATCCAATTATAATCTATTTTAA-C--
* * * ** *
8425290 AAATGAAAGAGAATTTAACTTAAAATCATTTATAAGATTGTAGAACCATTTAAAGCAACTAATTA
191 -AA--AAA-A-AA-TTAACTTAAAATCATTTATAAGATTATAAAACCATTTAAATCAGGTAACTA
* * * * * * * *
8425355 GTATTTCGAAGAC-TGAGTGACTATAAATAGACTTTTCTTGTCAATAGATGGCTTTCGCTTCACT
250 GTATTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTAT-AACAGATGACTTTTGCTTCACG
* * * *
8425419 TGTTTTGAGGTAAACAACA
314 T-TTTTAAGGCAAACATCC
* * * * * *
8425438 AATTATTATCTGTTTTAA-TAAAAA-AATAAAAAAACTCAATTTAAAATCA-TTATAAGATTATA
1 AATTATGATCTATTTTAACCAAAAATGA-AAAAAAATTCAACTTAAAATCATTTATAAGATTATA
* * * * * * * *
8425500 AAATCACTT-AAAGCGAGTAACTAAG-CTTTCGAATGTATGAGTAA-CTATAAATAGACTTTT-T
65 AAATTA-TTGAAAGCGGGTAACT-AGTATTTCAAAGGCATGA-AAAGCTATAAATGGACTTTTCT
* * * * *** * * * *
8425561 T-TACAAATGGATGGTTTTTGCTTCACGTTTCCCAAGGTAAACATCCAATCATGATCTGTTTTAA
127 TGT-C-AATGGATGGCTTTCGTTTCATGTTTCTTGAGGCAAACATCCAATTATAATCTATTTT--
* * * * * * * * * *
8425625 GGAAAAATTAAAAAAATAAATTTAAAATTA-TTATTGAA-TTTAGAAAATCACTTAAAGCAAGTA
188 ---AACA--AAAAAAATTAACTTAAAATCATTTA-T-AAGATTATAAAACCATTTAAATCAGGTA
* ** ** * * ** * *** *
8425688 ATTAGGCTTTTGAAGGTATGAGTGACTGTAAATGCCCATTTT-TTGTCAGTGGATGACTTTTGTT
246 ACTAGTATTTCAAAGGCATGAGTGACTATAAATGGAC-TTTTCTTAT-AACAGATGACTTTTGCT
* *
8425752 TCACATTTTCCAAGGCAAACATCC
309 TCACGTTTT-TAAGGCAAACATCC
* *
8425776 AATTATGAACTATTTTAACTAAAAATGAAAAAAAAATTCAACTTAAAATCATTTATAAGATTATA
1 AATTATGATCTATTTTAACCAAAAATG-AAAAAAAATTCAACTTAAAATCATTTATAAGATTATA
* ** ** * ** * *
8425841 AAACTAGTT-AAAGCGACTAACTAGTATTTTGAAGGTATG-AGTGACCATAAATAGACTTTT-TC
65 AAATTA-TTGAAAGCGGGTAACTAGTATTTCAAAGGCATGAAAAG-CTATAAATGGACTTTTCT-
* *** * * * * * * *
8425903 TGTGAATGG-TTTTTTTTGCTTCCTGTTTCCTAAGGTAAACATCCAATTATGATCTATTTTAATA
127 TGTCAATGGATGGCTTTCGTTTCATGTTTCTTGAGGCAAACATCCAATTATAATCTA-TTT--T-
* * * * *
8425967 AAAAATGAATAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTATTGACAA-CAAGTAAT
188 AACAA--AA-AAAATT-AACTTAAAATCATTTATAAGATTATAAAACCATTTA-AATCAGGTAAC
** * * * * * ** * * *
8426031 TAGGCTTTTAAAAGCATGAATGGCTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCCTCA
248 TAGTATTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTAT-AACAGATGACTTTTGCTTCA
* * * *
8426096 TGTTTCTTGATGTAAACATCC
312 CGTTT-TTAAGGCAAACATCC
* * * *
8426117 AATTATGATCTGTTTTAA-CGAAGATG-AAAAAAATTCAACTTAAAATCATTTATAAGATTAGAA
1 AATTATGATCTATTTTAACCAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAA
** * * * * * ** *
8426180 AACCATTTAAATCGGGGCAACGAGTATTTCAAAGGCACG-AGTGACTATAAATGGACTTTTCTTA
66 AATTATTGAAAGC-GGGTAACTAGTATTTCAAAGGCATGAAAAG-CTATAAATGGACTTTTCTTG
* * ** * * * *
8426244 TTAATGAATGGCTTTCACTTCACT-TTTCTAGAGGCAAACATCTAACTA-AGATCTATTTTGACA
129 TCAATGGATGGCTTTCGTTTCA-TGTTTCTTGAGGCAAACATCCAATTATA-ATCTATTTTAACA
8426307 AAAAA
192 AAAAA
8426312 TGAAAAATAA
Statistics
Matches: 2498, Mismatches: 567, Indels: 339
0.73 0.17 0.10
Matches are distributed among these distances:
328 2 0.00
330 2 0.00
331 48 0.02
332 182 0.07
333 490 0.20
334 22 0.01
335 40 0.02
336 7 0.00
337 198 0.08
338 272 0.11
339 205 0.08
340 473 0.19
341 481 0.19
342 61 0.02
343 11 0.00
344 2 0.00
345 2 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (331 bp):
AATTATGATCTATTTTAACCAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAA
AATTATTGAAAGCGGGTAACTAGTATTTCAAAGGCATGAAAAGCTATAAATGGACTTTTCTTGTC
AATGGATGGCTTTCGTTTCATGTTTCTTGAGGCAAACATCCAATTATAATCTATTTTAACAAAAA
AAATTAACTTAAAATCATTTATAAGATTATAAAACCATTTAAATCAGGTAACTAGTATTTCAAAG
GCATGAGTGACTATAAATGGACTTTTCTTATAACAGATGACTTTTGCTTCACGTTTTTAAGGCAA
ACATCC
Found at i:8425078 original size:162 final size:161
Alignment explanation
Indices: 8424523--8425163 Score: 408
Period size: 169 Copynumber: 3.8 Consensus size: 161
8424513 ATTTCGAAGA
* * * * * * *
8424523 TATGAGTGACTATAAATGGATTCTTT-TTCTCAATAGATGGCTTTCGTTTTACGTTTCACAA-GT
1 TATGAGTGACTATAAATGGA--CTTTCTTGTCAATGGATAGCTTTC-CTTCACATTTCCCAACG-
* * * * * *
8424586 TAAACATCCAAGTATGA-ACTATTTTAACTAAATATAGAA-AAGAATTCAACTTAAAATCATTTA
62 TAAACGTCAAATTATGATA-TATTTTAACAAAATATA-AAGAA-AAATCAATTTAAAATCATTTA
* * ** * *
8424649 TAAGATTATAAAACCATTTAAAGCGACTAATTAGTAATATGAAAG
124 TAACATTATAAAATCACATAAA--GAGT-A--ACT-A-ATGAAAG
* * * * *** *
8424694 TATGAGTGACTATAAATGGACTTTTCTTGTGAATGGAT-GGTTTCGTTTCACTTTTCATGAGGTA
1 TATGAGTGACTATAAATGGAC-TTTCTTGTCAATGGATAGCTTTC-CTTCACATTTCCCAACGTA
8424758 AACAG-CAAATTATGATATATTTTAACAAAATATAAAGAAAAATCAATTTAAAATCATTTATAAC
64 AAC-GTCAAATTATGATATATTTTAACAAAATATAAAGAAAAATCAATTTAAAATCATTTATAAC
* *
8424822 ATTATAAAATCACTTAAAGCGAGTAACTAAGCTTTCGAAGG
128 ATTATAAAATCACATAAA--GAGTAACTAA----T-GAAAG
* * * *
8424863 CATGAGTGACTATAAATGGACTTTCCTT-ACAAATGGATAGCCTTCCTTTCACATTTCCCAACAT
1 TATGAGTGACTATAAATGGACTTT-CTTGTC-AATGGATAGCTTTCC-TTCACATTTCCCAACGT
* * ** * * *
8424927 AAACGTCCAATTATGATTTATTTTAATGAAATATAGA-AAAAATCAATTTAAAATTATTTTTAA-
63 AAACGTCAAATTATGATATATTTTAACAAAATATAAAGAAAAATCAATTTAAAATCATTTATAAC
* **
8424990 AGTTATAAAATCACATAAA-ATTATTTTAATGAAAG
128 A-TTATAAAATCACATAAAGAGTA-ACTAATGAAAG
*
8425025 TATGAGTGACTATAAATGGACATTTCTTGTCAATGGATAGCTTTCACTTCACATTTCCCAATGTA
1 TATGAGTGACTATAAATGGAC-TTTCTTGTCAATGGATAGCTTTC-CTTCACATTTCCCAACGTA
* * * * * * *
8425090 AACATCTAATTATGA-ACTGTTTTAACTAAAGAT--GGAAAATATTTCAACTTAAAATCATTTAT
64 AACGTCAAATTATGATA-TATTTTAACAAAATATAAAGAAAA-A--TCAATTTAAAATCATTTAT
*
8425152 AAGATTATAAAA
125 AACATTATAAAA
8425164 CTATTAAAAG
Statistics
Matches: 383, Mismatches: 60, Indels: 61
0.76 0.12 0.12
Matches are distributed among these distances:
161 4 0.01
162 82 0.21
163 6 0.02
164 27 0.07
165 2 0.01
166 5 0.01
167 3 0.01
168 6 0.02
169 121 0.32
170 96 0.25
171 31 0.08
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (161 bp):
TATGAGTGACTATAAATGGACTTTCTTGTCAATGGATAGCTTTCCTTCACATTTCCCAACGTAAA
CGTCAAATTATGATATATTTTAACAAAATATAAAGAAAAATCAATTTAAAATCATTTATAACATT
ATAAAATCACATAAAGAGTAACTAATGAAAG
Found at i:8428563 original size:169 final size:169
Alignment explanation
Indices: 8428057--8431135 Score: 2169
Period size: 171 Copynumber: 18.2 Consensus size: 169
8428047 CTGAGAATTA
* * * * * * * *
8428057 ACAAGAAAATTTCATTTATAGTCATTCATGCCTTTGAAAGCCTAATTACTCACTTTAAATGGTTT
1 ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTTTAAAT-GATT
* * * * *
8428122 TGTAATCTTATAAATTA-TTTAAGTT-TA-TTTTTTTTATTTTTTGTTAAAATAGATCATAAGTG
65 TATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTA-TTTTTGTTAAAACAGATCATAATTG
* * * **
8428184 GATGTTTGCCTAGAGAAACATAAAGTG-AAACTCATTTATTG
129 GATGTTTGCCTTGAGAAACATGAAGCGAAAAC-CATCCATTG
* * * * * * * * *
8428225 AAAAAAAAAGTCTATTTATAGTCACTCATGCCTTC-AAATACTAATAACTC-ATTCTCAATGTTT
1 ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTT-TAAATGATT
* * *
8428288 TAAAATCTTATAAATGATTTTAAGTTCAATTTGTTTTTTCATTTTTGGTTAAACCAGATCATAAT
65 TATAATCTTATAAATGATTTTAAGTTGAATTT-TTTTTT-ATTTTT-GTTAAAACAGATCATAAT
*
8428353 TGGATGTTTGCCTTGAGAAACATTAAG-GAAAAGCCATCCATTG
127 TGGATGTTTGCCTTGAGAAACATGAAGCGAAAA-CCATCCATTG
* * * * * * *
8428396 ACAAAAAAAGTCCATTTATAGTCACTTATGCCTTCAAAAGGCTAGTTACTTGCTTTGAATAATTT
1 ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTTTAAATGATTT
* * * * * *
8428461 ATAGTTTTGTGAATGATTTTAAGTT-AATTTTTTTTTATTTTTGGTTAAAATAGAACATAATTGG
66 ATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTATTTTT-GTTAAAACAGATCATAATTGG
* ** * * * *
8428525 ATGTTTACCTTGAGAAATGTGGAGCAAAAACTATCCATTC
130 ATGTTTGCCTTGAGAAACATGAAGCGAAAACCATCCATTG
* * * * *
8428565 ACTAGAGAAGTCCATTTATAGTCACTCATACCTTCGAAATACTAGTTACTCGATTTAAATAGATT
1 ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTTTAAAT-GATT
* * * * * * *
8428630 TATAATCTTATAAATGACTTTAAGTTG-ATATTTTTTTCAGTTTTGTTAAAATAGACCACAATTA
65 TATAATCTTATAAATGATTTTAAGTTGAAT-TTTTTTTTATTTTTGTTAAAACAGATCATAATTG
** * * * ** * *
8428694 GACCTTTGTCTTAAAAAACATGAAAAGAAAGCCATCCGTTG
129 GATGTTTGCCTTGAGAAACATGAAGCGAAAACCATCCATTG
* * * * * * * *
8428735 ACTA-AAAAGTCTATTTATAATCGCTCATGCCTTCGAAAGGCTAATTACTTGCTTTAAATAATTT
1 ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTTTAAATGA-TT
* * * * * *
8428799 TATAATCTTATAAATGATTTTAGGTTGAATTTTCTTTCATTTTTTGTTCAAATAGATCATAATTA
65 TATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTA-TTTTTGTTAAAACAGATCATAATTG
* * * **
8428864 AATGTTTGCCATGAGAAACATGAAG-TAGAAGTCATCCATTG
129 GATGTTTGCCTTGAGAAACATGAAGCGA-AAACCATCCATTG
* ** * ** * * *
8428905 ACTAGCTAAGTCCATTTATAGTCACTCATGCCTTCGAAATACTAGTTACTCAATTTAAACGGCTC
1 ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTTTAAA-TGATT
* * * * *
8428970 TACAATCTTGTAAATGATTTTAAGTTGAATTTATTTTTCATTTTTTGATAAAACATATCATAATT
65 TATAATCTTATAAATGATTTTAAGTTGAATTT-TTTTTTA-TTTTTGTTAAAACAGATCATAATT
* * * *
8429035 AGATTTTTGCCTT-AGAAA-ATGCAAAGTGAAAGCCATCCATTG
128 GGATGTTTGCCTTGAGAAACATG--AAGCGAAAACCATCCATTG
** * * * * *
8429077 ACAAGAAAAGTCTTTTTATAGTCACTTATGTCTTCGAAAG-CTTAGTTACTCGTTTTCAATGGTT
1 ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGAC-TAGTTACTCGCTTTAAATGATT
*
8429141 TATAATCTTATAAATGATTTTAAGTT--A-TTTTTTTTATTTTTGGTCAAAACAGATCATAATTG
65 TATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTATTTTT-GTTAAAACAGATCATAATTG
** **
8429203 GATGTTTTTCTTG-G--A-A--AA-CG----TGATCCATTG
129 GATGTTTGCCTTGAGAAACATGAAGCGAAAACCATCCATTG
* * * * * * *
8429233 A-GAGAAAAAGTCAATTTATAGTCATTCATACCTTCGAAAGCCTAGTTACTCGCTTTCAATAGTT
1 ACAAG-AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTTTAAAT-GAT
* * * * * * * *
8429297 TTATATTCTTATAAATAATTTTAAATTGAAATTTATTTCATTTTTAGTCAAAACAGGTCATAATT
64 TTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTATTTTT-GTTAAAACAGATCATAATT
* ** *
8429362 AGATGTTTGCCTTGAGAAAGC-TGAA-TTAAAAGCCATCAATTG
128 GGATGTTTGCCTTGAGAAA-CATGAAGCGAAAA-CCATCCATTG
* * * * * * * *
8429404 ACAAGAAAAGTCCATTTACACTCATTTATGCCTTCAAAACACTAATTACTCG-TTCTAAATGGTT
1 ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTT-TAAAT-GAT
* * ** ** * * *
8429468 TTATAATCTTATAAATAATTTCAAGTTGAGCGTTTTTTGAATTTTTGCTAAAAAAGACCATAATT
64 TTATAATCTTATAAATGATTTTAAGTTGA-ATTTTTTTTTATTTTTGTTAAAACAGATCATAATT
* * ** *
8429533 GGATGTTTGTCTTGAAAAATGTGAAGCGAAAGCCATCCATTG
128 GGATGTTTGCCTTGAGAAACATGAAGCGAAAACCATCCATTG
* * * * * * * * *
8429575 CCTAA-AGAAGTCCATTTATAGCCACTTATTCCTTTGAAATG-CTAGTTAGTCGATTTAAATGGC
1 AC-AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA-GACTAGTTACTCGCTTTAAAT-GA
* * * *
8429638 TTTATAATTTTGTAAATGATTTTAAGTTGAATTTTATTTTCATTTTTGTTAAAAAAGATCATAAT
63 TTTATAATCTTATAAATGATTTTAAGTTGAATTTT-TTTTTATTTTTGTTAAAACAGATCATAAT
* * * *
8429703 TGGATGTTTGTCTT-AGAAAATATGAAGCGAAAGCTATCCATTG
127 TGGATGTTTGCCTTGAG-AAACATGAAGCGAAAACCATCCATTG
* * * * * * * * * * *
8429746 ATAAGAAAAGTCTATTTATAGTCATTCATGTCTTAGAATGGCTTGTTACCCACTTTAAATGGTTT
1 ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTTTAAAT-GATT
* * * * * * * * * *
8429811 TAGAATCATGTAGATCATTTTAAGTTGAATTTCTTTTCATTTTCGATTAAAACAAATCATCATTG
65 TATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTATTTTTG-TTAAAACAGATCATAATTG
* *
8429876 GATGTTTGCC-TGAAAAACATGAAGC-AAAAGCCAACCATTG
129 GATGTTTGCCTTGAGAAACATGAAGCGAAAA-CCATCCATTG
* * * * * * *
8429916 ATAAGAAAAGTCCATTTATAGTCATTCATGCCCTT-GGAAGACAAGTGACTCTCTTTAAATGGTT
1 ACAAGAAAAGTCCATTTATAGTCACTCATG-CCTTCGAAAGACTAGTTACTCGCTTTAAAT-GAT
* * * * *
8429980 TTATAGTCTTATAAATGATTTTAAGTTG-ATTTTTGTTTAATTTTTCATTAAAACATATCGTAAT
64 TTATAATCTTATAAATGATTTTAAGTTGAATTTTT-TTTTATTTTT-GTTAAAACAGATCATAAT
* * * * *
8430044 TGGATGTTT-CTCTCGAGAAACGTAAAGCGAAAGCTATCCATTTG
127 TGGATGTTTGC-CTTGAGAAACATGAAGCGAAAACCATCCA-TTG
* * * * *
8430088 -TAAGAAAAGTTCATTTATAGTCACTCATGCCTTAGAAAGCCTAGTTACTAC-CTTTAATTGATT
1 ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACT-CGCTTTAAATGA-T
* * * * * *
8430151 TTAGAAAT-TTAAAAATAATTTTAAATTG-A-TTTTTTTAATTTTTGTTAAAATAGATCATAATT
64 TTA-TAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTATTTTTGTTAAAACAGATCATAATT
* * * * * *
8430213 TGATGTTTACATT-AGAAACATAAAGCGAAAGCCATCAATTG
128 GGATGTTTGCCTTGAGAAACATGAAGCGAAAACCATCCATTG
* * * * * *
8430254 ACAAGAGAAG-CCTATTTATAGTCA-TCCATACCTTCAAAAGTCTAATTACTC-ATTTAAAATGA
1 ACAAGAAAAGTCC-ATTTATAGTCACT-CATGCCTTCGAAAGACTAGTTACTCGCTTT-AAATGA
* * * * *
8430316 TTTTATAATCTTA-AAATTATTTTAAGCTCAA----TTTTT-TTTTTGTTCAAATAGATCATAAT
63 -TTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTATTTTTGTTAAAACAGATCATAAT
* * * *
8430375 TGGATGTTTGCCTCGAGAAACATAAAGCAAAAATCATCCATTG
127 TGGATGTTTGCCTTGAGAAACATGAAGCGAAAACCATCCATTG
* ** * * * * * *
8430418 ACAAGAAAAGTCCATTTATAGTTACTCAAACCTTTGAAATACTAGTTAGTCACTGTAAATGGGTT
1 ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTTTAAAT-GATT
* *** * * *
8430483 TAAAATAAAATAAATGATTTTAAGTTAAACTTTTTTTTTTCATTTTTGGTTAAAACAAAACATAA
65 TATAATCTTATAAATGATTTTAAGTTGAA--TTTTTTTTT-ATTTTT-GTTAAAACAGATCATAA
* * ** *
8430548 TTAGATGTTTGGCTTGAGAAATGTGAAGCAAAAACCATCCATTG
126 TTGGATGTTTGCCTTGAGAAACATGAAGCGAAAACCATCCATTG
* * * * * * * * * *
8430592 ATTAA-AGAAGTCTATTTACAGTCCCTCATGCCATCGAAATACTAGTTACTAGATTGAAATGGAT
1 A-CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTTTAAAT-GAT
* * *
8430656 TTATAATCTTATAAATGATTTTAAGTTG-A-TTTTTTTTATTTTTTGCTAAAATAGATCATAACT
64 TTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTA-TTTTTGTTAAAACAGATCATAATT
* * * * * * * *
8430719 AGATATTTGCCTCGGGAAACGTGAAGTGAAAATCATCCACTG
128 GGATGTTTGCCTTGAGAAACATGAAGCGAAAACCATCCATTG
** * * ** * *
8430761 GTAAGAAAAGTCCATTTATAGTCACTCATGCCTTCTAAATACTAGTTTGTTGCTTTAAATGGTTG
1 ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTTTAAATGATT-
* * * * * *
8430826 TAAAATATAATAAATGATTTTAAGTT-AATTTTTTTCTCATTTCTAGTTAAAACAAATCATAATT
65 TATAATCTTATAAATGATTTTAAGTTGAATTTTTTT-TTATTT-TTGTTAAAACAGATCATAATT
* * * * *
8430890 AGATGTTTGTCTCT-AAAAACATGAAGTGAAAGCCATCCATTG
128 GGATGTTTGCCT-TGAGAAACATGAAGCGAAAACCATCCATTG
* * * * * *
8430932 ACAAGCAAAGTCTATTTATAGTCACCCATGCCTTCGAAAGGCTAGTTACTCACTTTGAATGATTT
1 ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTTTAAATGATTT
* * * *
8430997 ATAGTCTTGTAAATGATTTTAAGTTGAA-TTTTTTTTATTTTTAGTTAATACAAATCATAATTGG
66 ATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTATTTTT-GTTAAAACAGATCATAATTGG
* * * * *
8431061 CTATTTGCCTTGAGGAACATGAAGTGAAAACTATCCATTG
130 ATGTTTGCCTTGAGAAACATGAAGCGAAAACCATCCATTG
* * * *
8431101 ACTAGAGAAA-TCTATTTATAGTCACTAATACCTTC
1 ACAAGA-AAAGTCCATTTATAGTCACTCATGCCTTC
8431136 AAAATATTTA
Statistics
Matches: 2305, Mismatches: 499, Indels: 213
0.76 0.17 0.07
Matches are distributed among these distances:
155 2 0.00
156 55 0.02
157 27 0.01
159 1 0.00
160 42 0.02
161 3 0.00
163 33 0.01
164 77 0.03
165 23 0.01
166 51 0.02
167 129 0.06
168 63 0.03
169 402 0.17
170 356 0.15
171 748 0.32
172 165 0.07
173 9 0.00
174 117 0.05
175 2 0.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (169 bp):
ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAGTTACTCGCTTTAAATGATTT
ATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTATTTTTGTTAAAACAGATCATAATTGGA
TGTTTGCCTTGAGAAACATGAAGCGAAAACCATCCATTG
Found at i:8431068 original size:340 final size:336
Alignment explanation
Indices: 8428059--8431141 Score: 2150
Period size: 340 Copynumber: 9.1 Consensus size: 336
8428049 GAGAATTAAC
* * * ** ** * * *
8428059 AAGAAAATTTCATTTATAGTCATTCATGCCTTTGAAAGCCTAATTACTCACTTTAAATGGTTTTG
1 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAATACTAGTTACTCGCTTTAAATGGTTTTA
* * * * * *
8428124 TAATCTTATAAATTA-TTTAAGTTTATTTTTTTT-ATTTTTTGTTAAAATAGATCATAAGTGGAT
66 TAATATTATAAATGATTTTAAGTTAATTTTTTTTCATTTTTTGTTAAAACAAATCATAATTGGAT
* * * * ** * * *
8428187 GTTTGCCTAGAGAAACATAAAGTGAAA-CTCATTTATTGAAAAAAAAAGTCTATTTATAGTCACT
131 GTTTG-CTTGAAAAACATGAAGCGAAAGC-CATCCATTG-ACAAGAAAGTCCATTTATAGTCACT
* * * * *
8428251 CATGCCTTC-AAATACTAATAACTCATTCTCAAT-GTTTTAAAATCTTATAAATGATTTTAAGTT
193 CATGCCTTCGAAATACTAGTTACTCATT-TAAATGGATTTATAATCTTATAAATGATTTTAAGTT
* * *
8428314 CAATTTGTTTTTTCATTTTTGGTTAAACCAGATCATAATTGGATGTTTGCCTTGAGAAACATTAA
257 GAA-TT-TTTTTT-ATTTTT-GTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACATGAA
*
8428379 G-GAAAAGCCATCCATTGAC
318 GTGAAAA-CCATCCATTGAT
* * ** * * **
8428398 AAAAAAAGTCCATTTATAGTCACTTATGCCTTCAAAAGGCTAGTTACTTGCTTTGAAT-AATTTA
1 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAATACTAGTTACTCGCTTTAAATGGTTTTA
* * * * * * *
8428462 TAGTTTTGTGAATGATTTTAAGTTAATTTTTTTTTATTTTTGGTTAAAATAGAA-CATAATTGGA
66 TAATATTATAAATGATTTTAAGTTAATTTTTTTTCATTTTTTGTTAAAACA-AATCATAATTGGA
* * ** * * * * * *
8428526 TGTTTACCTTGAGAAATGTGGAGCAAAAACTATCCATTCACTAGAGAAGTCCATTTATAGTCACT
130 TGTTT-GCTTGAAAAACATGAAGCGAAAGCCATCCATTGACAAGA-AAGTCCATTTATAGTCACT
* * *
8428591 CATACCTTCGAAATACTAGTTACTCGATTTAAATAGATTTATAATCTTATAAATGACTTTAAGTT
193 CATGCCTTCGAAATACTAGTTACTC-ATTTAAATGGATTTATAATCTTATAAATGATTTTAAGTT
* * * * * * ** * * * **
8428656 GATATTTTTTTCAGTTTTGTTAAAATAGACCACAATTAGACCTTTGTCTTAAAAAACATGAAAAG
257 GA-ATTTTTTTTATTTTTGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACATGAAGTG
* *
8428721 AAAGCCATCCGTTGACT
321 AAAACCATCCATTGA-T
* * * * ** * * **
8428738 -A-AAAAGTCTATTTATAATCGCTCATGCCTTCGAAAGGCTAATTACTTGCTTTAAATAATTTTA
1 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAATACTAGTTACTCGCTTTAAATGGTTTTA
* * * * * * **
8428801 TAATCTTATAAATGATTTTAGGTTGAATTTTCTTTCATTTTTTGTTCAAATAGATCATAATTAAA
66 TAATATTATAAATGATTTTAAGTT-AATTTTTTTTCATTTTTTGTTAAAACAAATCATAATTGGA
* * * * * *
8428866 TGTTTGCCATGAGAAACATGAAG-TAGAAGTCATCCATTGACTAGCTAAGTCCATTTATAGTCAC
130 TGTTTG-CTTGAAAAACATGAAGCGA-AAGCCATCCATTGACAAG-AAAGTCCATTTATAGTCAC
* * * * *
8428930 TCATGCCTTCGAAATACTAGTTACTCAATTTAAACGGCTCTACAATCTTGTAAATGATTTTAAGT
192 TCATGCCTTCGAAATACTAGTTACTC-ATTTAAATGGATTTATAATCTTATAAATGATTTTAAGT
* * * *
8428995 TGAATTTATTTTTCATTTTTTGATAAAACATATCATAATTAGATTTTTGCCTT-AGAAA-ATGCA
256 TGAATTT-TTTTT-A-TTTTTGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACATG--
* *
8429058 AAGTGAAAGCCATCCATTGAC
316 AAGTGAAAACCATCCATTGAT
** * * * * * *
8429079 AAGAAAAGTCTTTTTATAGTCACTTATGTCTTCGAAA-GCTTAGTTACTCGTTTTCAATGG-TTT
1 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAATAC-TAGTTACTCGCTTTAAATGGTTTT
* * * *
8429142 ATAATCTTATAAATGATTTTAAGTT-ATTTTTTTT-ATTTTTGGTCAAAACAGATCATAATTGGA
65 ATAATATTATAAATGATTTTAAGTTAATTTTTTTTCATTTTTTGTTAAAACAAATCATAATTGGA
* * * * * * *
8429205 TGTTTTTCTTG---GA-A--AA-CG--TG--ATCCATTGAGAGAAAAAGTCAATTTATAGTCATT
130 TG-TTTGCTTGAAAAACATGAAGCGAAAGCCATCCATTGACA-AGAAAGTCCATTTATAGTCACT
* ** * * * * * * *
8429259 CATACCTTCGAAAGCCTAGTTACTCGCTTTCAATAGTTTTATATTCTTATAAATAATTTTAAATT
193 CATGCCTTCGAAATACTAGTTACTC-ATTTAAATGGATTTATAATCTTATAAATGATTTTAAGTT
* * * * *
8429324 GAAATTTATTTCATTTTTAGTCAAAACAGGTCATAATTAGATGTTTGCCTTGAGAAAGC-TGAA-
257 G-AATTTTTTTTATTTTT-GTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAA-CATGAAG
* * *
8429387 TTAAAAGCCATCAATTGAC
319 TGAAAA-CCATCCATTGAT
* * * * * *
8429406 AAGAAAAGTCCATTTACACTCATTTATGCCTTCAAAACACTAATTACTCG-TTCTAAATGGTTTT
1 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAATACTAGTTACTCGCTT-TAAATGGTTTT
* * * *** * * * *
8429470 ATAATCTTATAAATAATTTCAAGTTGAGCGTTTTTTGAATTTTTGCTAAAA-AAGACCATAATTG
65 ATAATATTATAAATGATTTTAAGTT-AATTTTTTTTCATTTTTTGTTAAAACAA-ATCATAATTG
** * *
8429534 GATGTTTGTCTTGAAAAATGTGAAGCGAAAGCCATCCATTGCCTAA-AGAAGTCCATTTATAGCC
128 GATGTTTG-CTTGAAAAACATGAAGCGAAAGCCATCCATTGAC-AAGA-AAGTCCATTTATAGTC
* * * * * * * *
8429598 ACTTATTCCTTTGAAATGCTAGTTAGTCGATTTAAATGGCTTTATAATTTTGTAAATGATTTTAA
190 ACTCATGCCTTCGAAATACTAGTTACTC-ATTTAAATGGATTTATAATCTTATAAATGATTTTAA
* * *
8429663 GTTGAATTTTATTTTCATTTTTGTTAAAAAAGATCATAATTGGATGTTTGTCTT-AGAAAATATG
254 GTTGAATTTT-TTTT-ATTTTTGTTAAAACAGATCATAATTGGATGTTTGCCTTGAG-AAACATG
* * *
8429727 AAGCGAAAGCTATCCATTGAT
316 AAGTGAAAACCATCCATTGAT
* * * * * * * *
8429748 AAGAAAAGTCTATTTATAGTCATTCATGTCTT-AGAATGGCTTGTTACCCACTTTAAATGGTTTT
1 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAT-ACTAGTTACTCGCTTTAAATGGTTTT
* * * * * * *
8429812 AGAATCA-TGTAGATCATTTTAAGTTGAATTTCTTTTCA-TTTTCGATTAAAACAAATCATCATT
65 ATAAT-ATTATAAATGATTTTAAGTT-AATTTTTTTTCATTTTTTG-TTAAAACAAATCATAATT
* * * *
8429875 GGATGTTTGCCTGAAAAACATGAAGCAAAAGCCAACCATTGATAAGAAAAGTCCATTTATAGTCA
127 GGATGTTTGCTTGAAAAACATGAAGCGAAAGCCATCCATTGACAAG-AAAGTCCATTTATAGTCA
* * * * * * * *
8429940 TTCATGCCCTT-GGAAGACAAGTGACTCTCTTTAAATGGTTTTATAGTCTTATAAATGATTTTAA
191 CTCATG-CCTTCGAAATACTAGTTACTC-ATTTAAATGGATTTATAATCTTATAAATGATTTTAA
* * * * *
8430004 GTTG-ATTTTTGTTTAATTTTTCATTAAAACATATCGTAATTGGATGTTT-CTCTCGAGAAACGT
254 GTTGAATTTTT-TTT-ATTTTT-GTTAAAACAGATCATAATTGGATGTTTGC-CTTGAGAAACAT
* * * *
8430067 AAAGCGAAAGCTATCCATTTG-T
315 GAAGTGAAAACCATCCA-TTGAT
* ** * *
8430089 AAGAAAAGTTCATTTATAGTCACTCATGCCTT-AGAAAGCCTAGTTACTAC-CTTTAATTGATTT
1 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCA-AAATACTAGTTACT-CGCTTTAAATGGTTT
* * * * * * * * *
8430152 TAGAA-ATTTAAAAATAATTTTAAATTGA-TTTTTTT-AATTTTTGTTAAAATAGATCATAATTT
64 TATAATA-TTATAAATGATTTTAAGTTAATTTTTTTTCATTTTTTGTTAAAACAAATCATAATTG
* * * *
8430214 GATGTTTACATT-AGAAACATAAAGCGAAAGCCATCAATTGACAAGAGAAG-CCTATTTATAGTC
128 GATGTTTGC-TTGAAAAACATGAAGCGAAAGCCATCCATTGACAAGA-AAGTCC-ATTTATAGTC
* * * *
8430277 A-TCCATACCTTCAAAAGT-CTAATTACTCATTTAAAAT-GATTTTATAATCTTA-AAATTATTT
190 ACT-CATGCCTTCGAAA-TACTAGTTACTCATTT-AAATGGA-TTTATAATCTTATAAATGATTT
* * * * * *
8430338 TAAGCTCAA---TTTTT-TTTTTGTTCAAATAGATCATAATTGGATGTTTGCCTCGAGAAACATA
251 TAAGTTGAATTTTTTTTATTTTTGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACATG
** * *
8430399 AAGCAAAAATCATCCATTGAC
316 AAGTGAAAACCATCCATTGAT
* ** ** * * * *
8430420 AAGAAAAGTCCATTTATAGTTACTCAAACCTTTGAAATACTAGTTAGTCACTGTAAATGGGTTTA
1 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAATACTAGTTACTCGCTTTAAATGGTTTTA
* ** * *
8430485 AAATAAAATAAATGATTTTAAGTTAAACTTTTTTTTTTCATTTTTGGTTAAAACAAAACATAATT
66 TAATATTATAAATGATTTTAAGTT-AA---TTTTTTTTCATTTTTTGTTAAAACAAATCATAATT
* * ** * * * * *
8430550 AGATGTTTGGCTTGAGAAATGTGAAGCAAAAACCATCCATTGATTAA-AGAAGTCTATTTACAGT
127 GGATGTTT-GCTTGAAAAACATGAAGCGAAAGCCATCCATTGA-CAAGA-AAGTCCATTTATAGT
* * * *
8430614 CCCTCATGCCATCGAAATACTAGTTACTAGATTGAAATGGATTTATAATCTTATAAATGATTTTA
189 CACTCATGCCTTCGAAATACTAGTTACT-CATTTAAATGGATTTATAATCTTATAAATGATTTTA
* * * * * * * *
8430679 AGTTG-ATTTTTTTTATTTTTTGCTAAAATAGATCATAACTAGATATTTGCCTCGGGAAACGTGA
253 AGTTGAATTTTTTTTA-TTTTTGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACATGA
* * *
8430743 AGTGAAAATCATCCACTGGT
317 AGTGAAAACCATCCATTGAT
* ** * *
8430763 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCTAAATACTAGTTTGTTGCTTTAAATGGTTGTA
1 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAATACTAGTTACTCGCTTTAAATGGTTTTA
* * * * *
8430828 AAATATAATAAATGATTTTAAGTTAATTTTTTTCTCATTTCTAGTTAAAACAAATCATAATTAGA
66 TAATATTATAAATGATTTTAAGTTAATTTTTTT-TCATTTTTTGTTAAAACAAATCATAATTGGA
* *
8430893 TGTTTGTCTCT-AAAAACATGAAGTGAAAGCCATCCATTGACAAGCAAAGTCTATTTATAGTCAC
130 TGTTTG-CT-TGAAAAACATGAAGCGAAAGCCATCCATTGACAAG-AAAGTCCATTTATAGTCAC
* ** * * *
8430957 CCATGCCTTCGAAAGGCTAGTTACTCACTTTGAAT-GATTTATAGTCTTGTAAATGATTTTAAGT
192 TCATGCCTTCGAAATACTAGTTACTCA-TTTAAATGGATTTATAATCTTATAAATGATTTTAAGT
* * * * *
8431021 TGAATTTTTTTTATTTTTAGTTAATACAAATCATAATTGGCTATTTGCCTTGAGGAACATGAAGT
256 TGAATTTTTTTTATTTTT-GTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACATGAAGT
*
8431086 GAAAACTATCCATTGACT
320 GAAAACCATCCATTGA-T
* * *
8431104 -AGAGAAA-TCTATTTATAGTCACTAATACCTTCAAAATA
1 AAGA-AAAGTCCATTTATAGTCACTCATGCCTTCAAAATA
8431142 TTTAAAATCA
Statistics
Matches: 2162, Mismatches: 459, Indels: 245
0.75 0.16 0.09
Matches are distributed among these distances:
326 11 0.01
327 86 0.04
328 112 0.05
329 8 0.00
330 15 0.01
331 139 0.06
332 8 0.00
333 2 0.00
334 4 0.00
335 3 0.00
336 8 0.00
337 58 0.03
338 229 0.11
339 249 0.12
340 445 0.21
341 258 0.12
342 337 0.16
343 190 0.09
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (336 bp):
AAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAATACTAGTTACTCGCTTTAAATGGTTTTA
TAATATTATAAATGATTTTAAGTTAATTTTTTTTCATTTTTTGTTAAAACAAATCATAATTGGAT
GTTTGCTTGAAAAACATGAAGCGAAAGCCATCCATTGACAAGAAAGTCCATTTATAGTCACTCAT
GCCTTCGAAATACTAGTTACTCATTTAAATGGATTTATAATCTTATAAATGATTTTAAGTTGAAT
TTTTTTTATTTTTGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACATGAAGTGAAAAC
CATCCATTGAT
Found at i:8431440 original size:169 final size:168
Alignment explanation
Indices: 8431151--8431475 Score: 445
Period size: 169 Copynumber: 1.9 Consensus size: 168
8431141 ATTTAAAATC
* * * * ** *
8431151 AATTGTGATATTATAAAACCATTTAAGGTGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAA
1 AATTATGACATTATAAAACCATTTAAAGTGAATAATAAGGCTTTCGAAGGCATAAGTAACTATAA
* * * * * * *
8431216 ATGGACTTTTCTTGCTAATGAATGGCCTTTTGTTCATGATTTCCATGGTAGACATTTAATTATAG
66 ATAGACTTTTCTTGCCAATAAATGGCCTTTTATTCATGATTTCCATGGCAGACATTCAATTATAC
8431281 TCTGTTTTAACTAAAAATATTAAAAAACTCAAATTAATT
131 TCTGTTTTAACTAAAAATA-TAAAAAACTCAAATTAATT
*
8431320 AATTATGACATTATAAAACTATTTAAAGTGAATAATAAGGCTTTCGAAGGC-TCAAGTAACTATA
1 AATTATGACATTATAAAACCATTTAAAGTGAATAATAAGGCTTTCGAAGGCAT-AAGTAACTATA
* * * *
8431384 AATAGACTTTTCTTGCCAATAAATGGCTTTTTATTCCTGGTTTCTATGGCAGACATTCAATTATA
65 AATAGACTTTTCTTGCCAATAAATGGCCTTTTATTCATGATTTCCATGGCAGACATTCAATTATA
*
8431449 CTCTGTTTTAATTAAAAATATAAAAAA
130 CTCTGTTTTAACTAAAAATATAAAAAA
8431476 TTTAACTTTA
Statistics
Matches: 135, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
168 8 0.06
169 127 0.94
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (168 bp):
AATTATGACATTATAAAACCATTTAAAGTGAATAATAAGGCTTTCGAAGGCATAAGTAACTATAA
ATAGACTTTTCTTGCCAATAAATGGCCTTTTATTCATGATTTCCATGGCAGACATTCAATTATAC
TCTGTTTTAACTAAAAATATAAAAAACTCAAATTAATT
Found at i:8431599 original size:141 final size:141
Alignment explanation
Indices: 8431341--8431625 Score: 369
Period size: 141 Copynumber: 2.0 Consensus size: 141
8431331 TATAAAACTA
*
8431341 TTTAAAGTGAATAATAAGGCTTTCGAAGGCTCAAGTAACTATAAATAGACTTTTCTTGCCAATAA
1 TTTAAAGTGAATAATAAGGCTTTCGAAGGCTCAAGTAACTATAAATAGACTTTTCTTACCAATAA
* * * * * *
8431406 ATGGCTTTTTATTCCTGGTTTCTATGGCAGACATTCAATTATACTCTGTTTTAATTAAAAATAT-
66 ATGACTTTTTATTCC-GGTTTCCATGACAGACATTCAATTATAATCTATTTTAACTAAAAATATA
8431470 AAAAAATTTAAC
130 AAAAAATTTAAC
* ** * * *
8431482 TTTAAAGTGAATAATAAGGCTTTTGAAGGCAT-GGGTAACTATAAATGGGCTTTTCTTACCAATG
1 TTTAAAGTGAATAATAAGGCTTTCGAAGGC-TCAAGTAACTATAAATAGACTTTTCTTACCAATA
* * *
8431546 CATGACTTTTTCTTCAC-GTTTCCCATGATAGACATTCAATTATAATCTATTTTAACTAAAAATA
65 AATGACTTTTTATTC-CGGTTT-CCATGACAGACATTCAATTATAATCTATTTTAACTAAAAATA
8431610 TAAAAAAATTTAAC
128 TAAAAAAATTTAAC
8431624 TT
1 TT
8431626 AAAATCAGTT
Statistics
Matches: 124, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
140 4 0.03
141 104 0.84
142 16 0.13
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.38
Consensus pattern (141 bp):
TTTAAAGTGAATAATAAGGCTTTCGAAGGCTCAAGTAACTATAAATAGACTTTTCTTACCAATAA
ATGACTTTTTATTCCGGTTTCCATGACAGACATTCAATTATAATCTATTTTAACTAAAAATATAA
AAAAATTTAAC
Found at i:8431750 original size:312 final size:311
Alignment explanation
Indices: 8431172--8431796 Score: 810
Period size: 312 Copynumber: 2.0 Consensus size: 311
8431162 TATAAAACCA
* * * * *
8431172 TTTAAGGTGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCTAATGA
1 TTTAAAGTGAATAATAAGGCTTTCGAAGGCATGGGTAACTATAAATGGACTTTTCTTACCAATGA
* * * * * * * *
8431237 ATGGCCTTTTGTTCATGATTTCCATGGTAGACATTTAATTATAGTCTGTTTTAACTAAAAATATT
66 ATGACCTTTTCTTCACGATTTCCATGATAGACATTCAATTATAATCTATTTTAACTAAAAATATA
* * *
8431302 AAAAAACTCAAATTAATTAATTATGACATTATAAAACTATTTAAAGTGAATAATAAGGCTTTCGA
131 AAAAAACTCAAATTAATCAATTATGACATTATAAAACTATTTAAAATGAATAATAAGACTTTCGA
* * * *
8431367 AGGCTCAAGTAACTATAAATAGACTTTTCTTGCCAATAAATGGCTTTTTATTCCTGGTTTCTATG
196 AGGCTCAAGTAACTATAAAGAGAATTTTCTTGCCAATAAATAGCTTTTTATTCCTAGTTTCTATG
* * * *
8431432 GCAGACATTCAATTATACTCTGTTTTAATTAAAAATATAAAAAATTT-AAC
261 GCAGACATCCAATTATAATATGTTTTAATAAAAAATATAAAAAATTTCAAC
* * *
8431482 TTTAAAGTGAATAATAAGGCTTTTGAAGGCATGGGTAACTATAAATGGGCTTTTCTTACCAATGC
1 TTTAAAGTGAATAATAAGGCTTTCGAAGGCATGGGTAACTATAAATGGACTTTTCTTACCAATGA
*
8431547 ATGACTTTTTCTTCACG-TTTCCCATGATAGACATTCAATTATAATCTATTTTAACTAAAAATAT
66 ATGACCTTTTCTTCACGATTT-CCATGATAGACATTCAATTATAATCTATTTTAACTAAAAATAT
* * * * * *
8431611 AAAAAAATTTAACTTAAAATCAGTTATGAGATTATAAAACTATTTAAAATGAGTAATAAGACTTT
130 AAAAAAACTCAAATT--AATCAATTATGACATTATAAAACTATTTAAAATGAATAATAAGACTTT
* ** * *
8431676 TGAAGGCT-TGGATGACTATAAAGAGAATTTTCTTGCCAATAAATAGCTTTTTCTTCAC-AG-TT
193 CGAAGGCTCAAG-TAACTATAAAGAGAATTTTCTTGCCAATAAATAGCTTTTTATTC-CTAGTTT
8431738 CTCATGGCAGACATCCAATTATAATATGTTTTAATAAAAAATATAAAAAATTTCAAC
256 CT-ATGGCAGACATCCAATTATAATATGTTTTAATAAAAAATATAAAAAATTTCAAC
8431795 TT
1 TT
8431797 AAAATCAATT
Statistics
Matches: 269, Mismatches: 39, Indels: 11
0.84 0.12 0.03
Matches are distributed among these distances:
309 3 0.01
310 120 0.45
311 5 0.02
312 135 0.50
313 6 0.02
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.37
Consensus pattern (311 bp):
TTTAAAGTGAATAATAAGGCTTTCGAAGGCATGGGTAACTATAAATGGACTTTTCTTACCAATGA
ATGACCTTTTCTTCACGATTTCCATGATAGACATTCAATTATAATCTATTTTAACTAAAAATATA
AAAAAACTCAAATTAATCAATTATGACATTATAAAACTATTTAAAATGAATAATAAGACTTTCGA
AGGCTCAAGTAACTATAAAGAGAATTTTCTTGCCAATAAATAGCTTTTTATTCCTAGTTTCTATG
GCAGACATCCAATTATAATATGTTTTAATAAAAAATATAAAAAATTTCAAC
Found at i:8431780 original size:171 final size:171
Alignment explanation
Indices: 8431482--8431803 Score: 411
Period size: 171 Copynumber: 1.9 Consensus size: 171
8431472 AAAATTTAAC
* * * ** **
8431482 TTTAAAGTGAATAATAAGGCTTTTGAAGGCATGGGTAACTATAAATGGGCTTTTCTTACCAATGC
1 TTTAAAATGAATAATAAGACTTTTGAAGGCATGGATAACTATAAATGGAATTTTCTTACCAATAA
* * *
8431547 ATGACTTTTTCTTCACGTTTCCCATGATAGACATTCAATTATAATCTATTTTAACTAAAAATATA
66 ATGACTTTTTCTTCACGTTTCCCATGACAGACATCCAATTATAATATATTTTAACTAAAAATAT-
8431612 AAAAAATTT-AACTTAAAATCAGTTATGAGATTATAAAACTA
130 AAAAAATTTCAACTTAAAATCAGTTATGAGATTATAAAACTA
* * * *
8431653 TTTAAAATGAGTAATAAGACTTTTGAAGGCTTGGATGACTATAAA-GAGAATTTTCTTGCCAATA
1 TTTAAAATGAATAATAAGACTTTTGAAGGCATGGATAACTATAAATG-GAATTTTCTTACCAATA
* * *
8431717 AAT-AGCTTTTTCTTCACAG-TTCTCATGGCAGACATCCAATTATAATATGTTTTAA-TAAAAAA
65 AATGA-CTTTTTCTTCAC-GTTTCCCATGACAGACATCCAATTATAATATATTTTAACT-AAAAA
8431779 TATAAAAAATTTCAACTTAAAATCA
127 TATAAAAAATTTCAACTTAAAATCA
8431804 ATTANNNNNN
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
170 12 0.09
171 116 0.90
172 1 0.01
ACGTcount: A:0.39, C:0.13, G:0.12, T:0.36
Consensus pattern (171 bp):
TTTAAAATGAATAATAAGACTTTTGAAGGCATGGATAACTATAAATGGAATTTTCTTACCAATAA
ATGACTTTTTCTTCACGTTTCCCATGACAGACATCCAATTATAATATATTTTAACTAAAAATATA
AAAAATTTCAACTTAAAATCAGTTATGAGATTATAAAACTA
Found at i:8432377 original size:170 final size:161
Alignment explanation
Indices: 8432099--8432419 Score: 290
Period size: 170 Copynumber: 1.9 Consensus size: 161
8432089 TTTTAAAACC
* * * * *
8432099 ATTTAAAGTGAGTAATAAGGCTTTCAAAGGCTTAGGTGACGATAAATGGACTTTTCTTTCCAATG
1 ATTTAAAGAGAGTAATAAGGCTTTCAAAGGCATAGGTGACGATAAATGAACTTTTCTTGCCAATA
* * * * * * * *
8432164 GAGGGGTTTTTCTTCATAGCTCCCATGGTCGACATACAATTATAATCTGTTTTAA-TTAAAAA-T
66 CAGGGCTTGTTCTTCATAGCTCCCATAGACAACATACAATTATAATATGTTTTAACTAAAAAAGT
*
8432227 ATACAAAACTCAACTTAAAATCAATTATTAGA
131 A-AAAAAACTCAACTTAAAATCAATTATTAGA
* **
8432259 NNNNNNNNNNATTTAAAGAGAGTAATAAGGCTTTCAAAGGCATGGGTGATTATAAATGAACTTTT
1 ----------ATTTAAAGAGAGTAATAAGGCTTTCAAAGGCATAGGTGACGATAAATGAACTTTT
* * * **
8432324 CTTGCCAATACATGGCTTGTTCTTCAT-GTTTCC-TAAGACAAACATTTAATTATAATATGTTTT
56 CTTGCCAATACAGGGCTTGTTCTTCATAGCTCCCAT-AGAC-AACATACAATTATAATATGTTTT
*
8432387 AACTAAAAAAGTAAAAAAATTCAACTTAAAATC
119 AACTAAAAAAGTAAAAAAACTCAACTTAAAATC
8432420 TGTTATGGGA
Statistics
Matches: 124, Mismatches: 23, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
168 1 0.01
169 6 0.05
170 91 0.73
171 24 0.19
172 2 0.02
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.33
Consensus pattern (161 bp):
ATTTAAAGAGAGTAATAAGGCTTTCAAAGGCATAGGTGACGATAAATGAACTTTTCTTGCCAATA
CAGGGCTTGTTCTTCATAGCTCCCATAGACAACATACAATTATAATATGTTTTAACTAAAAAAGT
AAAAAAACTCAACTTAAAATCAATTATTAGA
Found at i:8432512 original size:171 final size:169
Alignment explanation
Indices: 8432269--8433903 Score: 1077
Period size: 171 Copynumber: 9.6 Consensus size: 169
8432259 NNNNNNNNNN
* * * *
8432269 ATTTAAAGAGAGTAATAAGGCTTTCAAAGGCATGGGTGATTATAAATGAACTTTTCTTGCCAAT-
1 ATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTT-CCAATG
* *
8432333 ACATGGCTTGTTCTTCATGTTTCCTAAGACAAACATTTAATTATAATATGTTTTAACTAAAAAAG
65 A-ATGGCTT-TTCTTCATGTTTCCTAAGACAAACATTTAATTATAATATATTTTAACCAAAAAAG
** * *
8432398 TAAAAAAATTCAACTTAAAATCTGTTATGGGATTATGAAA-T
128 TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACT
* * * * * * *
8432439 CATTCAAAGTGAGTAACAAGGCTTTCAAAGACTTGAGTAACTATAAA-GAGACTTTT-TGTGCAA
1 -ATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGA-ACTTTTCT-T-CCA
* * * *
8432502 ATGAATGGCTTTTGCTTCATGTTT-CTCAAGATAAATATTCAATTATAATATATGTT-ACTCAAA
62 ATGAATGGCTTTT-CTTCATGTTTCCT-AAGACAAACATTTAATTATAATATATTTTAAC-CAAA
* * *
8432565 AATA-TAAAAAAATTCAACCTAAAATCAATTATAAGTTTATAAAACT
124 AA-AGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACT
* * *
8432611 ATTTAAGGTGAGTAATAA-CCTTTTTGAAGGCATGAGTGACTATAAATGAACTTTTCTCTCCAAT
1 ATTTAAAGTGAGTAATAAGGC-TTTCGAAGGCATGAGTGACTATAAATGAACTTTTCT-TCCAAT
* * * * ** * * * *
8432675 AAATGTCTTTTGCTTCATGTTTTCTATGGTAAACA-TTCATGTTTTATATATTTTAACCAAAACT
64 GAATGGCTTTT-CTTCATGTTTCCTAAGACAAACATTTAAT-TATAATATATTTTAACCAAAA-A
* * *
8432739 A-TAAAAAAATTAAACTTAAAATTAATTATGAGATTATAAAACC
126 AGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACT
** * * * *
8432782 ATTTAAAGCAAGTAATAAGGCTTTTGAAGGCATGAGTGACTAGAAATCG-ACTTTCCTTGTCAAT
1 ATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAAT-GAACTTTTCTT-CCAAT
* * * * *
8432846 GAATGGCTTCTCTTCATGTTTTCC-AAGACAGAA-ATTCAATTATAATCTATTTTAA-C--ACAT
64 GAATGGCTTTTCTTCATG-TTTCCTAAGACA-AACATTTAATTATAATATATTTTAACCAAAAAA
*
8432906 GTAAAAAAATTCAACCTAAAATCAATTATGAGATTATAAAACT
127 GTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACT
*
8432949 ATTTAAAG-CATGTAATAAGGCCTTT-GAAGGCATGAGTGACTATAAATGAACTTTTCTTACCAA
1 ATTTAAAGTGA-GTAATAAGG-CTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTT-CCAA
* * * * * * *
8433012 TGTATAGCTTTTTCTTCATGCTTCCCAAGA-AAGACATTTAATTATAATCTGTTTTAACCAAAAG
63 TGAATGGC-TTTTCTTCATGTTTCCTAAGACAA-ACATTTAATTATAATATATTTTAACCAAAAA
* * * *
8433076 TGTCAAAAAATTTAACTTAAAATTAATTATGAGATTATAAAACT
126 AGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACT
*********** * * * * * *
8433120 ATTTGNNNNNNNNNNTAAGGCTTTCAAAGGCTTGAATGACTATAAATGGACTTTTGTTCCAATGG
1 ATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCCAATGA
** * ** ** * * * ********** *
8433185 ATCACTCTTGCTTCACATTT-CTCAAGGTAAATATTCAATTACAATATATTNNNNNNNNNNATGT
66 ATGGCT-TTTCTTCATGTTTCCT-AAGACAAACATTTAATTATAATATATTTTAACCAAAAAAGT
* * *
8433249 AAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAGCC
129 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACT
* ** ** * * *
8433290 ATGTAAAGCAAGTAATAAGGCTTTTAAAGGCTTGGGTGAC-AGTAAAT-AGACTTTTCTTGTCAA
1 ATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTA-TAAATGA-ACTTTTCTT-CCAA
** * * * * * * * *
8433353 TGAATGATTTTTTTTTTCATATTTCCTTAGGCAAACATTCAATTATAATATGTTTTAACTAAAAC
63 TGAATG--GCTTTTCTTCATGTTTCCTAAGACAAACATTTAATTATAATATATTTTAACCAAAAA
* * * * * * *
8433418 TGTAAAAAGATGCAACCTAAAATCAATTGTGAGATTACAAAACC
126 AGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACT
* * * *
8433462 ATTTAAAGTGAGTAATAAGGCCTTT-AAAGGCATGGGTGACTATAAAT-AGACTTTTCTTGTCAT
1 ATTTAAAGTGAGTAATAAGG-CTTTCGAAGGCATGAGTGACTATAAATGA-ACTTTTCTT-CCAA
* * ** * * * *
8433525 TGCATAGCTTTTTCTTCACATTTTCTACA-ACAAACATTCAATTATAATCTATTTTAA-GAAAAA
63 TGAATGGC-TTTTCTTCATGTTTCCTA-AGACAAACATTTAATTATAATATATTTTAACCAAAAA
*
8433588 A-TAAAAAACAATTCACCTTAAAATCAATTATGAGATTATAAAA-T
126 AGT-AAAAA-AATTCAACTTAAAATCAATTATGAGATTATAAAACT
* * * * * *
8433632 CATTTAAAGAGAGTAACAAGGCTTTCGAAGGCTTGAGTGACTATAAAT-AGACTTTTCATGCTAG
1 -ATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGA-ACTTTTC-TTCCAA
* * * *
8433696 TGGATGGCTTTTTCTTCATGTTT-CTCAAGGA-AAACATTCT-ATTCTAATCTATATTAACCAAA
63 TGAATGGC-TTTTCTTCATGTTTCCT-AA-GACAAACATT-TAATTATAATATATTTTAACCAAA
* * * * * *
8433758 ACTA-TAAAACATTTCAAGTTAAAATCAATTATGAGGTTATAAAACC
124 A-AAGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACT
** * * ** * *
8433804 ATTTAAAGCAAGTAATAAGGATTTCGAAGGCATGGGCCACTATAAGTGGACTTTTCTTGCCAATG
1 ATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTT-CCAATG
* *
8433869 AATGGCTTTTTCTTTATGTTTCCTAAGGCAAACAT
65 AATGGC-TTTTCTTCATGTTTCCTAAGACAAACAT
8433904 NNNNNNNNNN
Statistics
Matches: 1150, Mismatches: 251, Indels: 126
0.75 0.16 0.08
Matches are distributed among these distances:
166 3 0.00
167 100 0.09
168 38 0.03
169 6 0.01
170 173 0.15
171 670 0.58
172 150 0.13
173 10 0.01
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (169 bp):
ATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCCAATGA
ATGGCTTTTCTTCATGTTTCCTAAGACAAACATTTAATTATAATATATTTTAACCAAAAAAGTAA
AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACT
Found at i:8433478 original size:172 final size:170
Alignment explanation
Indices: 8432072--8433903 Score: 1064
Period size: 171 Copynumber: 10.7 Consensus size: 170
8432062 NNNNNNNNAA
* * ** * *
8432072 AAAATTCAATTATGATATTTTAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCTTAGGTG
1 AAAA-TCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCAAAGGCATGGGTG
* * * * * ** * * *
8432137 ACGATAAATGGACTTTTCTT-TCCAATGGA-GGGGTTTTTCTTCATAGCTCCCATGGTC-GACAT
65 ACTATAAATAGACTTTTCTTGT-CAATGAATGAGCTTTTTCTTCATATTTCCTAAGG-CAAACAT
* * * * * *
8432199 ACAATTATAATCTGTTTTAATTAAAAA-TATACAAAACTCAACTT
128 TCAATTATAATCTATTTTAA-CAAAAACT-TAAAAAATTCAACCT
* **********
8432243 AAAATCAATTATTAGANNNNNNNNNNATTTAAAG-AGAGTAATAAGGCTTTCAAAGGCATGGGTG
1 AAAATCAATTATGAGATTATAAAACCATTTAAAGCA-AGTAATAAGGCTTTCAAAGGCATGGGTG
* * * * *
8432307 ATTATAAAT-GAACTTTTCTTGCCAAT-ACATG-GCTTGTTCTTCATGTTTCCTAAGACAAACAT
65 ACTATAAATAG-ACTTTTCTTGTCAATGA-ATGAGCTTTTTCTTCATATTTCCTAAGGCAAACAT
* * * * * *
8432369 TTAATTATAATATGTTTTAACTAAAAAAGTAAAAAAATTCAACTT
128 TCAATTATAATCTATTTTAAC--AAAAACTTAAAAAATTCAACCT
** * * * * ** * * * * *
8432414 AAAATCTGTTATGGGATTATGAAATCATTCAAAGTGAGTAACAAGGCTTTCAAAGACTTGAGTAA
1 AAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCAAAGGCATGGGTGA
* * * ** *
8432479 CTATAAAGAGAC-TTT-TTGTGCAAATGAATG-GCTTTTGCTTCATGTTT-CTCAAGATAAATAT
66 CTATAAATAGACTTTTCTTGT-C-AATGAATGAGCTTTTTCTTCATATTTCCT-AAGGCAAACAT
* * *
8432540 TCAATTATAATATATGTTACTCAAAAA-TATAAAAAAATTCAACCT
128 TCAATTATAATCTATTTTA-ACAAAAACT-T-AAAAAATTCAACCT
* * * * ** * ** *
8432585 AAAATCAATTATAAGTTTATAAAACTATTTAAGGTGAGTAATAA-CCTTTTTGAAGGCATGAGTG
1 AAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGC-TTTCAAAGGCATGGGTG
* * * * * * * *
8432649 ACTATAAAT-GAACTTTTCTCT-CCAATAAATG-TCTTTTGCTTCATGTTTTCTATGGTAAACAT
65 ACTATAAATAG-ACTTTTCT-TGTCAATGAATGAGCTTTTTCTTCATATTTCCTAAGGCAAACAT
* * * * * *
8432711 TC-ATGTTTTATATATTTTAACCAAAACTATAAAAAAATTAAACTT
128 TCAAT-TATAATCTATTTTAACAAAAACT-T-AAAAAATTCAACCT
* ** *
8432756 AAAATTAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGCATGAGTGA
1 AAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCAAAGGCATGGGTGA
* * * * * *
8432821 CTAGAAATCGACTTTCCTTGTCAATGAATG-GC-TTCTCTTCATGTTTTCC-AAGACAGAA-ATT
66 CTATAAATAGACTTTTCTTGTCAATGAATGAGCTTTTTCTTCAT-ATTTCCTAAGGCA-AACATT
* ** *
8432882 CAATTATAATCTATTTTAAC-ACATGTAAAAAAATTCAACCT
129 CAATTATAATCTATTTTAACAAAAACTTAAAAAATTCAACCT
* * * *
8432923 AAAATCAATTATGAGATTATAAAACTATTTAAAGCATGTAATAAGGCCTTT-GAAGGCATGAGTG
1 AAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGG-CTTTCAAAGGCATGGGTG
** * ** * *
8432987 ACTATAAAT-GAACTTTTCTTACCAATGTAT-AGCTTTTTCTTCATGCTTCCCAA-GAAAGACAT
65 ACTATAAATAG-ACTTTTCTTGTCAATGAATGAGCTTTTTCTTCATATTTCCTAAGGCAA-ACAT
* * * * * *
8433049 TTAATTATAATCTGTTTTAACCAAAAGTGTCAAAAAATTTAACTT
128 TCAATTATAATCTATTTTAACAAAAACT-T-AAAAAATTCAACCT
* * *********** * **
8433094 AAAATTAATTATGAGATTATAAAACTATTTGNNNNNNNNNNTAAGGCTTTCAAAGGCTTGAATGA
1 AAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCAAAGGCATGGGTGA
* * * * * * * * * *
8433159 CTATAAATGGACTTTTGTT-CCAATGGATCA-CTCTTGCTTCACATTT-CTCAAGGTAAATATTC
66 CTATAAATAGACTTTTCTTGTCAATGAATGAGCTTTTTCTTCATATTTCCT-AAGGCAAACATTC
* * ********* * *
8433221 AATTACAATATATTNNNNNNNNNNA-TGTAAAAAAATTTAACTT
130 AATTATAATCTATT-TTAACAAAAACT-T-AAAAAATTCAACCT
* * * *
8433264 AAAATCAATTATGAGATTATAAAGCCATGTAAAGCAAGTAATAAGGCTTTTAAAGGCTTGGGTGA
1 AAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCAAAGGCATGGGTGA
** * *
8433329 C-AGTAAATAGACTTTTCTTGTCAATGAATGATTTTTTTTTTCATATTTCCTTAGGCAAACATTC
66 CTA-TAAATAGACTTTTCTTGTCAATGAATGAGCTTTTTCTTCATATTTCCTAAGGCAAACATTC
* * * *
8433393 AATTATAATATGTTTTAACTAAAACTGTAAAAAGATGCAACCT
130 AATTATAATCTATTTTAACAAAAACT-TAAAAA-ATTCAACCT
* * **
8433436 AAAATCAATTGTGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCCTTT-AAAGGCATGGGTG
1 AAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGG-CTTTCAAAGGCATGGGTG
* * * * *
8433500 ACTATAAATAGACTTTTCTTGTCATTGCAT-AGCTTTTTCTTCACATTTTCTACA-ACAAACATT
65 ACTATAAATAGACTTTTCTTGTCAATGAATGAGCTTTTTCTTCATATTTCCTA-AGGCAAACATT
* * *
8433563 CAATTATAATCTATTTTAAGAAAAAATAAAAAACAATTC-ACCTT
129 CAATTATAATCTATTTTAACAAAAACT-TAAAA-AATTCAACC-T
* * * * *
8433607 AAAATCAATTATGAGATTATAAAATCATTTAAAG-AGAGTAACAAGGCTTTCGAAGGCTTGAGTG
1 AAAATCAATTATGAGATTATAAAACCATTTAAAGCA-AGTAATAAGGCTTTCAAAGGCATGGGTG
* * * * *
8433671 ACTATAAATAGACTTTTCATG-CTAGTGGATG-GCTTTTTCTTCATGTTT-CTCAAGGAAAACAT
65 ACTATAAATAGACTTTTCTTGTC-AATGAATGAGCTTTTTCTTCATATTTCCT-AAGGCAAACAT
* * * * * **
8433733 TCTATTCTAATCTATATTAACCAAAACTATAAAACATTTCAAGTT
128 TCAATTATAATCTATTTTAACAAAAACT-TAAAA-AATTCAACCT
* * * **
8433778 AAAATCAATTATGAGGTTATAAAACCATTTAAAGCAAGTAATAAGGATTTCGAAGGCATGGGCCA
1 AAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCAAAGGCATGGGTGA
* * * * *
8433843 CTATAAGTGGACTTTTCTTGCCAATGAATG-GCTTTTTCTTTATGTTTCCTAAGGCAAACAT
66 CTATAAATAGACTTTTCTTGTCAATGAATGAGCTTTTTCTTCATATTTCCTAAGGCAAACAT
8433904 NNNNNNNNNN
Statistics
Matches: 1295, Mismatches: 297, Indels: 138
0.75 0.17 0.08
Matches are distributed among these distances:
166 2 0.00
167 99 0.08
168 36 0.03
169 15 0.01
170 281 0.22
171 713 0.55
172 140 0.11
173 8 0.01
174 1 0.00
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.34
Consensus pattern (170 bp):
AAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCAAAGGCATGGGTGA
CTATAAATAGACTTTTCTTGTCAATGAATGAGCTTTTTCTTCATATTTCCTAAGGCAAACATTCA
ATTATAATCTATTTTAACAAAAACTTAAAAAATTCAACCT
Found at i:8433903 original size:342 final size:339
Alignment explanation
Indices: 8432072--8433903 Score: 1328
Period size: 342 Copynumber: 5.4 Consensus size: 339
8432062 NNNNNNNNAA
* * ** *
8432072 AAAATTCAATTATGATATTTTAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGC-TTAGGT
1 AAAA-TCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCAAAGGCATGA-GT
* * * * * * * * * * * * *
8432136 GACGATAAATGGACTTTTCTTTCCAATGGAGGGGTTTTTCTTCATAGCTCCCATGGTC-GACATA
64 GACTATAAATAGACTTTTCTTGCCAATGAATGGCTTTTTCTTCAT-GTTTCTA-AGACAAACATT
* * * * * * * * ******
8432200 CAATTATAATCTGTTTTAATTAAAAATATACAAAACTCAACTTAAAATCAATTATTAGANNNNNN
127 CAATTATAATATATTTTAA-CAAAAATAAAAAAAATTCAACCTAAAATCAATTATGAGATTATAA
**** * * * *
8432265 NNNNATTTAAAGAGAGTAATAAGGCTTTCAAAGGCATGGGTGATTATAAATGAACTTTTCTTGCC
191 AACTATTTAAAGAGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGCT
* *
8432330 AAT-ACATGGCTTGTTCTTCATGTTTCCTAA-GACAAACATT-TAATTATAATATGTTTTAACTA
256 AATGA-ATGGCTTTTTCTTCATGTTTCCTAAGGA-AAACATTCT-ATTATAATATGTTTTAACCA
*
8432392 AAA-AAGTAAAAAAATTCAACTT
318 AAACTA-TAAAAAAATTCAACTT
** * * * * ** * * * *
8432414 AAAATCTGTTATGGGATTATGAAATCATTCAAAGTGAGTAACAAGGCTTTCAAAGACTTGAGTAA
1 AAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCAAAGGCATGAGTGA
* * * * *
8432479 CTATAAAGAGACTTTT-TGTGCAAATGAATGGCTTTTGCTTCATGTTTCTCAAGATAAATATTCA
66 CTATAAATAGACTTTTCT-TGCCAATGAATGGCTTTTTCTTCATGTTTCT-AAGACAAACATTCA
* * * *
8432543 ATTATAATATATGTTACTCAAAAATATAAAAAAATTCAACCTAAAATCAATTATAAGTTTATAAA
129 ATTATAATATATTTTA-ACAAAAATA-AAAAAAATTCAACCTAAAATCAATTATGAGATTATAAA
* * * *
8432608 ACTATTTAAGGTGAGTAATAA-CCTTTTTGAAGGCATGAGTGACTATAAATGAACTTTTCTCT-C
192 ACTATTTAAAGAGAGTAATAAGGC-TTTCGAAGGCATGAGTGACTATAAATGAACTTTTCT-TGC
* * * * * * * * * *
8432671 CAATAAATGTCTTTTGCTTCATGTTTTCTATGGTAAACATTC-ATGTTTTATATATTTTAACCAA
255 TAATGAATGGCTTTTTCTTCATGTTTCCTAAGGAAAACATTCTAT-TATAATATGTTTTAACCAA
*
8432735 AACTATAAAAAAATTAAACTT
319 AACTATAAAAAAATTCAACTT
* **
8432756 AAAATTAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGCATGAGTGA
1 AAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCAAAGGCATGAGTGA
* * * * * *
8432821 CTAGAAATCGACTTTCCTTGTCAATGAATGGC-TTCTCTTCATGTTTTCCAAGACAGAA-ATTCA
66 CTATAAATAGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATG-TTTCTAAGACA-AACATTCA
* * **
8432884 ATTATAATCTATTTTAACACATGT-AAAAAAATTCAACCTAAAATCAATTATGAGATTATAAAAC
129 ATTATAATATATTTTAACAAAAATAAAAAAAATTCAACCTAAAATCAATTATGAGATTATAAAAC
* * *
8432948 TATTTAAAGCA-TGTAATAAGGCCTTT-GAAGGCATGAGTGACTATAAATGAACTTTTCTTACCA
194 TATTTAAAG-AGAGTAATAAGG-CTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGCTA
* * * * *
8433011 ATGTATAGCTTTTTCTTCATGCTTCCCAA-GAAAGACATT-TAATTATAATCTGTTTTAACCAAA
257 ATGAATGGCTTTTTCTTCATGTTTCCTAAGGAAA-ACATTCT-ATTATAATATGTTTTAACCAAA
* * * *
8433074 AGTGTCAAAAAATTTAACTT
320 ACTATAAAAAAATTCAACTT
* * *********** * *
8433094 AAAATTAATTATGAGATTATAAAACTATTTGNNNNNNNNNNTAAGGCTTTCAAAGGCTTGAATGA
1 AAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCAAAGGCATGAGTGA
* * * ** * * ** ** *
8433159 CTATAAATGGACTTTTGTT-CCAATGGATCACTCTTGCTTCACATTTCTCAAGGTAAATATTCAA
66 CTATAAATAGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTTCT-AAGACAAACATTCAA
* ********* * * * *
8433223 TTACAATATATTNNNNNNNNNNATGTAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAG
130 TTATAATATATT-TTAACAAAAAT-AAAAAAAATTCAACCTAAAATCAATTATGAGATTATAAAA
* * ** * *
8433288 CCATGTAAAGCA-AGTAATAAGGCTTTTAAAGGCTTGGGTGAC-AGTAAAT-AGACTTTTCTTG-
193 CTATTTAAAG-AGAGTAATAAGGCTTTCGAAGGCATGAGTGACTA-TAAATGA-ACTTTTCTTGC
** * * * * * *
8433349 TCAATGAATGATTTTTTTTTTCATATTTCCTTAGGCAAACATTCAATTATAATATGTTTTAACTA
255 T-AATGAATG-GCTTTTTCTTCATGTTTCCTAAGGAAAACATTCTATTATAATATGTTTTAACCA
* * * *
8433414 AAACTGTAAAAAGATGCAACCT
318 AAACTATAAAAAAATTCAACTT
* * ** *
8433436 AAAATCAATTGTGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCCTTT-AAAGGCATGGGTG
1 AAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGG-CTTTCAAAGGCATGAGTG
* * * *
8433500 ACTATAAATAGACTTTTCTTGTCATTGCATAGCTTTTTCTTCACAT-TTTCTACA-ACAAACATT
65 ACTATAAATAGACTTTTCTTGCCAATGAATGGCTTTTTCTT--CATGTTTCTA-AGACAAACATT
* *
8433563 CAATTATAATCTATTTTAAGAAAAAATAAAAAACAATTC-ACCTTAAAATCAATTATGAGATTAT
127 CAATTATAATATATTTTAA-CAAAAATAAAAAA-AATTCAACC-TAAAATCAATTATGAGATTAT
* * *
8433627 AAAA-TCATTTAAAGAGAGTAACAAGGCTTTCGAAGGCTTGAGTGACTATAAAT-AGACTTTTCA
189 AAAACT-ATTTAAAGAGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGA-ACTTTTCT
* * * * * *
8433690 TGCTAGTGGATGGCTTTTTCTTCATGTTT-CTCAAGGAAAACATTCTATTCTAATCTATATTAAC
252 TGCTAATGAATGGCTTTTTCTTCATGTTTCCT-AAGGAAAACATTCTATTATAATATGTTTTAAC
* * *
8433754 CAAAACTATAAAACATTTCAAGTT
316 CAAAACTATAAAAAAATTCAACTT
* * * * **
8433778 AAAATCAATTATGAGGTTATAAAACCATTTAAAGCAAGTAATAAGGATTTCGAAGGCATGGGCCA
1 AAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCAAAGGCATGAGTGA
* * * *
8433843 CTATAAGTGGACTTTTCTTGCCAATGAATGGCTTTTTCTTTATGTTTCCTAAGGCAAACAT
66 CTATAAATAGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTT-CTAAGACAAACAT
8433904 NNNNNNNNNN
Statistics
Matches: 1147, Mismatches: 290, Indels: 106
0.74 0.19 0.07
Matches are distributed among these distances:
337 18 0.02
338 235 0.20
339 6 0.01
340 18 0.02
341 236 0.21
342 494 0.43
343 130 0.11
344 8 0.01
345 2 0.00
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.34
Consensus pattern (339 bp):
AAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCAAAGGCATGAGTGA
CTATAAATAGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTTCTAAGACAAACATTCAAT
TATAATATATTTTAACAAAAATAAAAAAAATTCAACCTAAAATCAATTATGAGATTATAAAACTA
TTTAAAGAGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGCTAATGA
ATGGCTTTTTCTTCATGTTTCCTAAGGAAAACATTCTATTATAATATGTTTTAACCAAAACTATA
AAAAAATTCAACTT
Found at i:8435275 original size:171 final size:170
Alignment explanation
Indices: 8434669--8435421 Score: 661
Period size: 171 Copynumber: 4.4 Consensus size: 170
8434659 NNNNNNNNNN
* * *
8434669 ATAATATATTTTAACTAAAAATGTAAAAAAATTTAAATTAAAATCAATTAT--GATTGCA-AAAC
1 ATAATATATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATT--ATAAAC
* * * *
8434731 TATTTAAAGCGTGTAATAAGGCTTTCAAAGGCATAAGTGACCATAAATGGACTTTTCATAC-C-A
64 CATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATAAGTGACTATAAATGAACTTTTC-T-CTCTA
*
8434794 ATAGATGGCTTTTGCTTCATGTTTC-CTAAGACAGACATTCAATT
127 ATAGATGGCTTTTGCTTCATGTTTCTC-AAGATAGACATTCAATT
* * * ** * *
8434838 ATAATCTGTTTGAAGTAAAAATGT-AAAAAATTCATCTTAAAATCAATTATGAGATTATAAATCA
1 ATAATATATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAACCA
* * * * ** * * *
8434902 TTTAAAGCGAGTAGTTAGGTTTTCGAAGGCATGGGTGACTATAAAT-AGA-TTTTTTATGCCAAT
66 TTTAAAGCGAGTAATAAGGCTTTCAAAGGCATAAGTGACTATAAATGA-ACTTTTCTCT-CTAAT
* * ** * *
8434965 AAAAGGCTTTTATTTCACGTTTCTCAACATAGACATTCAATT
129 AGATGGCTTTTGCTTCATGTTTCTCAAGATAGACATTCAATT
* * * ** * * *
8435007 ATAAAATATTTTAATCAAAAATGCAAAACCATTCAATTTAAAATCAATTATTAGATAATCAAACC
1 ATAATATATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT-AAACC
* * * * * * *
8435072 ATATAAAGGGAATAGTAATGC-TTCGGAAGGCATGAGTGACTATAAATGAACTTTTCTCTCTAAT
65 ATTTAAAGCGAGTAATAAGGCTTTC-AAAGGCATAAGTGACTATAAATGAACTTTTCTCTCTAAT
* * * *
8435136 GGATGTCTGTTGCTTCATGTTT-T-AGAGATATACATTCAATT
129 AGATGGCTTTTGCTTCATGTTTCTCA-AGATAGACATTCAATT
* *
8435177 ATAATATATTTTAACCAAAAATGTAAAAACAATTTAACATAAAATCAATTATGAGATTATAAACC
1 ATAATATATTTTAACCAAAAATGTAAAAA-AATTCAACTTAAAATCAATTATGAGATTATAAA-C
* * ** * * ** *
8435242 CATTTAAAGTGAGTAATAACGCTTTCAAAGGCATAAACGATTGTAAATGGTCTTTTCT-TGTCAA
64 CATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATAAGTGACTATAAATGAACTTTTCTCTCT-AA
*
8435306 TAGATGGCTTTTGCTTTATGTTTCTCAA-AGTAGACATTCAATT
128 TAGATGGCTTTTGCTTCATGTTTCTCAAGA-TAGACATTCAATT
* ** ** * *
8435349 ATAACATATTTTAATGAAACGTGTAAAAAAATTCAACTTAAAATTAATTATGAGATTATAAAATC
1 ATAATATATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT-AAACC
8435414 ATTTAAAG
65 ATTTAAAG
8435422 AGNNNNNNNN
Statistics
Matches: 463, Mismatches: 99, Indels: 42
0.77 0.16 0.07
Matches are distributed among these distances:
167 1 0.00
168 29 0.06
169 117 0.25
170 81 0.17
171 183 0.40
172 51 0.11
173 1 0.00
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.35
Consensus pattern (170 bp):
ATAATATATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAACCA
TTTAAAGCGAGTAATAAGGCTTTCAAAGGCATAAGTGACTATAAATGAACTTTTCTCTCTAATAG
ATGGCTTTTGCTTCATGTTTCTCAAGATAGACATTCAATT
Found at i:8435342 original size:342 final size:339
Alignment explanation
Indices: 8434758--8435404 Score: 741
Period size: 342 Copynumber: 1.9 Consensus size: 339
8434748 AAGGCTTTCA
* *
8434758 AAGGCATAAGTGACCATAAATGGACTTTTCATACCAATAGATGGCTTTTGCTTCATGTTTCCTAA
1 AAGGCATAAGTGACCATAAATGAACTTTTCATACCAATAGATGGCTGTTGCTTCATGTTT-CTAA
* * ** * *
8434823 GACAGACATTCAATTATAATCTGTTTGAAGTAAAAATGTAAAAAATTCATCTTAAAATCAATTAT
65 GACAGACATTCAATTATAATATATTTGAACCAAAAATGTAAAAAATTCAACATAAAATCAATTAT
* * * * * * ****
8434888 GAGATTATAAATCATTTAAAGCGAGTAGTTAGGTTTTCGAAGGCATGGGTGACTATAAATAGATT
130 GAGATTATAAACCATTTAAAGCGAGTAATAACGCTTTCAAAGGCATAAACGACTATAAATAGATT
8434953 TTTTATGCCAATAAAAGGCTTTTATTTCACGTTTCTCAACATAGACATTCAATTATAAAATATTT
195 TTTTATGCCAATAAAAGGCTTTTATTTCACGTTTCTCAACATAGACATTCAATTATAAAATATTT
** * *
8435018 TAATCAAAAATGCAAAACCATTCAATTTAAAATCAATTATTAGATAATCAAACCATATAAAGGGA
260 TAATCAAAAATGCAAAAAAATTCAACTTAAAATCAATTATGAGATAATCAAACCATATAAAGGGA
8435083 ATAGTAATGCTTCGG
325 ATAGTAATGCTTCGG
* * * *
8435098 AAGGCATGAGTGACTATAAATGAACTTTTC-T-CTCTAATGGATGTCTGTTGCTTCATGTTT-TA
1 AAGGCATAAGTGACCATAAATGAACTTTTCATAC-C-AATAGATGGCTGTTGCTTCATGTTTCTA
* * * *
8435160 GAGATATACATTCAATTATAATATATTTTAACCAAAAATGTAAAAACAATTTAACATAAAATCAA
64 -AGACAGACATTCAATTATAATATATTTGAACCAAAAATGT-AAAA-AATTCAACATAAAATCAA
* * *
8435225 TTATGAGATTATAAACCCATTTAAAGTGAGTAATAACGCTTTCAAAGGCATAAACGATTGTAAAT
126 TTATGAGATTATAAA-CCATTTAAAGCGAGTAATAACGCTTTCAAAGGCATAAACGACTATAAAT
* * * * * *
8435290 -GGTCTTTTCT-TGTCAATAGATGGCTTTTGCTTT-ATGTTTCTCAA-AGTAGACATTCAATTAT
190 AGAT-TTTT-TATGCCAATAAAAGGCTTTT-ATTTCACGTTTCTCAACA-TAGACATTCAATTAT
* * ** * *
8435351 AACATATTTTAATGAAACGTGTAAAAAAATTCAACTTAAAATTAATTATGAGAT
251 AAAATATTTTAATCAAAAATGCAAAAAAATTCAACTTAAAATCAATTATGAGAT
8435405 TATAAAATCA
Statistics
Matches: 252, Mismatches: 45, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
338 3 0.01
339 35 0.14
340 53 0.21
341 33 0.13
342 124 0.49
343 4 0.02
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (339 bp):
AAGGCATAAGTGACCATAAATGAACTTTTCATACCAATAGATGGCTGTTGCTTCATGTTTCTAAG
ACAGACATTCAATTATAATATATTTGAACCAAAAATGTAAAAAATTCAACATAAAATCAATTATG
AGATTATAAACCATTTAAAGCGAGTAATAACGCTTTCAAAGGCATAAACGACTATAAATAGATTT
TTTATGCCAATAAAAGGCTTTTATTTCACGTTTCTCAACATAGACATTCAATTATAAAATATTTT
AATCAAAAATGCAAAAAAATTCAACTTAAAATCAATTATGAGATAATCAAACCATATAAAGGGAA
TAGTAATGCTTCGG
Found at i:8436020 original size:171 final size:170
Alignment explanation
Indices: 8435725--8444494 Score: 2525
Period size: 171 Copynumber: 51.0 Consensus size: 170
8435715 NNNNNNNNNN
* * * ** *
8435725 AACCATTTAACGGGACTAATAAGGCTTTTAAAGGCATGGGTGACTATAAATGGACTCTTT-TTGT
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACT-TTTCTTGT
* * * * ** * *
8435789 CAATGAATGGCTTTTTTTTTATGTTTCTCAAGACAAACATTCAAATATAATTTCTTTTAACCAAA
65 CAATGAATAGCTTTTTCTTCATGTTTCTTAAGGTAAACATTC-AATATAATCTATTTTAACCAAA
* * * **
8435854 AATGTACAAAAATTCAACCTAAAAGAAATTATGAGATTATAA
129 AATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* *
8435896 AATCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATAAATGGACTTTAT-TTGT
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTT-TCTTGT
* * * * * *
8435960 CAATGAATAGCTTTTTCTTTATGTTT-TTAGAGGCAGACATTCAACTTTAATCTTTTTTAACTAA
65 CAATGAATAGCTTTTTCTTCATGTTTCTTA-AGGTAAACATTCAA-TATAATCTATTTTAACCAA
8436024 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
128 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * ** * * *
8436067 AATCATTTGAAGCGAGTAATAAAACTCTT-GAAGGCATGGGTGACTATGAATGGACTTTTCTTAT
1 AACCATTTAAAGCGAGTAATAAGGCT-TTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGT
* * * * * * *
8436131 CAATGAATGGCTTTTTTTTCACGTTTCCTAGGGTAAACATTCAATTATAGTCTATTTTAACAAAA
65 CAATGAATAGCTTTTTCTTCATGTTTCTTAAGGTAAACATTCAA-TATAATCTATTTTAACCAAA
*
8436196 AATATAAAAAAATTCAACCTAAAATCAATTATGAGATTATAA
129 AATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * *
8436238 AACTATTTAAAGCAAGTAATAAGGCCTTCGAAGG-TATGGGTGACTATAAATGGACTTTTCTTGT
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCT-TGGGTGACTATAAATGGACTTTTCTTGT
* * * * * *
8436302 TAATGCATGGCATTTTCTTCACGTTT-TTAGAGGTAGACATTCAATGATAATCTATTTTAA-CAA
65 CAATGAATAGCTTTTTCTTCATGTTTCTTA-AGGTAAACATTCAAT-ATAATCTATTTTAACCAA
* * * * *
8436365 AACATACAAAAATATTTAACTTAAAATCAAGTATGAGATTATAG
128 AA-ATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * * *
8436409 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGG-TTCGAGTGACTATAAATAGACTTTTCTTAT
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTT-GGGTGACTATAAATGGACTTTTCTTGT
* ** *
8436473 CAATGAATAG-TTTTT-TTTATGTTTCTTAACATAAACATTCAATTATAATCTATTTTAATCAAA
65 CAATGAATAGCTTTTTCTTCATGTTTCTTAAGGTAAACATTCAA-TATAATCTATTTTAACCAAA
* * ** * *
8436536 AATATAAAAAAATTTAATTTAAAATTGAGTATGAGATCATAA
129 AATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * * * *
8436578 AACCATTTAAAGCGAGTAATAATGCTTTTGAAGG-TATGAGTGACTATAATTCGACTTTTCTTGT
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCT-TGGGTGACTATAAATGGACTTTTCTTGT
** * *
8436642 CAATGAAT-GACTTTTTCTTCATGTTTCTTAAGACAAACATTCAATCATAATTTGA-TTTAACTA
65 CAATGAATAG-CTTTTTCTTCATGTTTCTTAAGGTAAACATTCAAT-ATAATCT-ATTTTAACCA
* * *
8436705 AAAATGTAAAAATATTCAACCTAAAATCAATTATGAGATTATAA
127 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * * * * * *
8436749 AACCATTTAAAGTGAGTAATAAGGCTTTCGAAGACTTGAGTGGCTATTAATAGACTTTTCTTGCC
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGTC
* ** * * * * *
8436814 AATGAATA-ATATTTTCTTCATGTTT-TCGGAGGTAAACATTCAGCTATAATATGTTATAACTAA
66 AATGAATAGCT-TTTTCTTCATGTTTCT-TAAGGTAAACATTCA-ATATAATCTATTTTAACCAA
*
8436877 AAAT-GAAAAAAATTCAACTTAAAATCAATTATGAGATTAT-A
128 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * *
8436918 AACCATTTAAAGCGAGTAATAAGG-TTCTTGAAGGCATGGGTGACTATAAATGAACTTTTCTTG-
1 AACCATTTAAAGCGAGTAATAAGGCTT-TCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGT
* * * * * *
8436981 CTAATGAAT-GGTTTTGTTTTCACGTTTCCTAAGGTAAACATTCAATTATAATCTGTTTTAACAA
65 C-AATGAATAGCTTTT-TCTTCATGTTTCTTAAGGTAAACATTCAA-TATAATCTATTTTAACCA
* * * *
8437045 AAAATATCAAAAAATTCAACCTAAAATTAATTATGAGATTAAAA
127 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * * *
8437089 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAATTGAACTTTTCTTGCC
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGTC
* ** * * *
8437154 AATGAATAGCTTTTTCTTCATGGTTCCCATGGTAGACATTCAATTATAATCTGTTTTAACCAAAA
66 AATGAATAGCTTTTTCTTCATGTTTCTTAAGGTAAACATTCAA-TATAATCTATTTTAACCAAAA
* * *
8437219 ATATTAAAAAATTTAACTTCAAATCAATTATGAGATTATAA
130 ATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
** * *
8437260 AATGATTTAAAGCGAGTAATAAGGCTTTCGAAAGCTTGGGTGACTATAAATGGACTTTTCTTATC
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGTC
* *** ** * * * *
8437325 AA-AAACT-GACTTTTTCTTCACACTTCCCATGGCAGACATTCAAATATAATCTATTTTAA-CTA
66 AATGAA-TAG-CTTTTTCTTCATGTTTCTTAAGGTAAACATTC-AATATAATCTATTTTAACCAA
* * *
8437387 AAA-CTAAAAAAATTCAACTTAAAATAAATTATTAGATTATAA
128 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * ********** * *
8437429 AACGATTTAAAGCGAGTGATAAGNNNNNNNNNNGCTTGGGTGACTATAAATGGGCTTTTCATG-C
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGTC
* * * * * *
8437493 GAA-GAAATGGCTTTTTCTTCATGCTTTC-CATGGCAAACATTCTATTATAATCTGTTTTAACCA
66 -AATG-AATAGCTTTTTCTTCATG-TTTCTTAAGGTAAACATTC-AATATAATCTATTTTAACCA
**********
8437556 AAAATAT-AAAANNNNNNNNNNAAAATCAATTATGAGATTATAA
127 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * *
8437599 AACAATTTAAAG-GAAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAAATGGACTTTTCTTGT
1 AACCATTTAAAGCG-AGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGT
* * * ** * * * * *
8437663 TAATGAAT-GACTTTTTCTTCAAAG-TACCCATGGTACACATCCAATTATAATCTGTTTTAACTA
65 CAATGAATAG-CTTTTTCTTC-ATGTTTCTTAAGGTAAACATTCAA-TATAATCTATTTTAACCA
********** * * *
8437726 AAAANNNNNNNNNNTTTAACTTAAAATCAATTATGGGATTATTA
127 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * * * * * * * * *
8437770 AACTAGTTAAAGCGGGTAATAAGGGTTTCGAACG-TATAGGTGGCTATAAATAGACTTTTTTTGC
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCT-TGGGTGACTATAAATGGACTTTTCTTGT
* * ** ** * * * *
8437834 CAATGAAT-GCCTTTTTGTTCACGGCTCCCATGGTAGATA-ATT-AATTATAATATGTTTTAATC
65 CAATGAATAG-CTTTTTCTTCATGTTTCTTAAGGTA-A-ACATTCAA-TATAATCTATTTTAACC
* *
8437896 AAAAATGTAAAAAAATTCAACCTAAAAAT-AATTATGA-AGTTATAA
126 AAAAATATAAAAAAATTCAA-CTTAAAATCAATTATGAGA-TTATAA
** * * *
8437941 AACCAACTAAAGCGAGTAATAAGGCTTTTGAAGGCTTGGGTGACTATAAATGGACGTTTCATGTC
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGTC
** * * * **
8438006 AATGAATAGCTTTTTCTTCATGTTTCCCAAAGTAGACATTCAATTGTAATCTNNNNNNNNNNNNN
66 AATGAATAGCTTTTTCTTCATGTTTCTTAAGGTAAACATTCAA-TATAATCT-----------AT
****************************************************
8438071 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
119 TTTAACCAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
**************************** * * * ***
8438123 NNNNNNNNNNNNNNNNNNNNNNNNNNNNC-AA--CTAT--GAGATTATAAA---ACCATTTAAAG
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCT-TGGGTGACTATAAATGGA-CTTTTCTTG
* * * * * * *
8438180 -CAA-GTAATAAGGC-TTTTC--AAAG---ATAAAGGT-GAC-TACAA-ATGAA-CT-TTTCTTA
64 TCAATG-AAT-A-GCTTTTTCTTCATGTTTCTTAAGGTAAACATTCAATAT-AATCTATTT-TAA
* * * **** ** * * * *
8438232 GCAATGAATGGCTTTTTCTTCATGTTC-CCTGAGACAAACTTTCAATCA-GA-ATCTGTTTTAA
124 CCAA--AA-----ATATAAAAAAATTCAACT--TA-AAA---TCAATTATGAGA----TTATAA
** * ** * * * ** ** * * * * **
8438293 CCAAAAATGTAAA-AAAAT-ATAA--C-CT-AAATCCATTAAGAGATTATCAAA---CCATTTAA
1 --AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGC-TTGGGTGACTAT-AAATGGACTTTTCT
* * * ** * ** ** * * *
8438349 AG-CGA-GTAACAGGCCTTTCGAAGACTTGA-GTGACTGTAAATGG-ACTTCTTGTGCCAT-TGG
62 TGTCAATG-AATA-G-CTTT----TTCTTCATGTTTCT-T-AA-GGTA-AACAT-T-CAATAT-A
* * ****** * * * * * * *
8438409 ATGGCTTTTGCTTCACGTTTTTTGAGACAGATATTCAA-TTATAATAT-ATATTAGTTAAAAATA
113 AT--CTATT--TTAACCAAAAAT-ATAAAAAAATTCAACTTA-AA-ATCA-ATTA--TGAGATTA
8438472 TAA
168 TAA
* * ****** * * * ** * * *
8438475 AA-AAATTAAA-CTNNNNNNNNNNTATGAGATTAT-AAAACCATTTAAGTTGAGTA-ATAAT-G-
1 AACCATTTAAAGC-----GAGTAATAAG-GCTT-TCGAAGGC--TT-GGGTGACTATA-AATGGA
* * * * * *
8438534 CTTTTGAAAGCATGAGTGACTATAAATAAACTTTTCTCTCCAACGGATGTCTTTTGCTTCATGTT
55 CTTTT-----C-T---TGTCAATGAAT-AGCTTTT-TCT---TC--ATG---TTT-CTT-AAG--
* * * ** * *
8438599 TTCTAAGATAGACAT-TCAATTTTTATATATTTTAACAAAAAATATAAAAAAATTCAACTTAAAA
97 GT-AAACATTCA-ATAT-AA---T---CTATTTTAACCAAAAATATAAAAAAATTCAACTTAAAA
******
8438663 TCAATTATGAGANNNNNN
153 TCAATTATGAGATTATAA
***************** ** * * * * *
8438681 NNNNNNNNNNNNNNNNNAACGATGCTTTCGAAGGCTTGAGTAACTATAAATGGACTTTTCGTGCC
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGTC
* * * ** *** * * * * * *
8438746 AATGGATGGCTTTTGCTTCACATTTCCCGAGGCAAACATTTAATTATAATATGTTTTTATCAAAA
66 AATGAATAGCTTTTTCTTCATGTTTCTTAAGGTAAACATTCAA-TATAATCTATTTTAACCAAAA
* * * *
8438811 ATGTAAAAATATTCAACCTAAACTCAATTATGAGATTATAA
130 ATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * * * * * * *
8438852 AACAATTTAAAGCGGGTAAGAA-G-TTCGTCAAAGG-TATGAGTGACTATAAATAGATTTTTCAT
1 AACCATTTAAAGCGAGTAATAAGGCTT--TCGAAGGCT-TGGGTGACTATAAATGGACTTTTCTT
* * * * * * *
8438914 ATCAATGCATAGCTTTTTCCTCATGTTT-TTCAAGGCAGACATTCAATTATAATCTATTTTGACT
63 GTCAATGAATAGCTTTTTCTTCATGTTTCTT-AAGGTAAACATTCAA-TATAATCTATTTTAACC
* *
8438978 AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAC
126 AAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * * * * ***
8439023 AACCATTTGAAGTGAGTGATAAGGCTTTTGAAGGCGTGGGTGACTATAAACAAACTTTTCTTGTC
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGTC
* * * * * * *
8439088 AATGAATGGCTATTTCTTCACGTTTC-CAAGGCAAACATTCAATTATAATATGTTTTAACCAAAA
66 AATGAATAGCTTTTTCTTCATGTTTCTTAAGGTAAACATTCAA-TATAATCTATTTTAACCAAAA
** * * **********
8439152 ATATAAAAACGTTTAACCTANNNNNNNNNNTGAGATTATAA
130 ATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * * * * * *
8439193 AACTATTTAAAGTGGGTAATAAGACCTTCGAAGG-TATGAGTGACTATAAATGGACTTTTCTT-A
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCT-TGGGTGACTATAAATGGACTTTTCTTGT
* * * * * * * * *
8439256 CAAATGCAT-GATGTGTTCTTTATGTTTCCTAAGGCAGACATTCAATTATAATTTGTTTTAACCA
65 C-AATGAATAGCT-TTTTCTTCATGTTTCTTAAGGTAAACATTCAA-TATAATCTATTTTAACCA
* * * ********** *
8439320 ATAATGTAAAAAAATTTAACTTAAAANNNNNNNNNNGATAATAA
127 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * * * * * * * * *
8439364 AACTATTTAAAGCGAATAGTGAGGCTTTCGAAGTCATGTGTGACAATAAATGAACTTTTCTTGCC
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGTC
* * ** * * *
8439429 AATGAAT-GACTTTTTCTTCACGTTTCCTAAGACAAACATTCAATTATAATTTGTTTTAACTAAA
66 AATGAATAG-CTTTTTCTTCATGTTTCTTAAGGTAAACATTCAA-TATAATCTATTTTAACCAAA
* *
8439493 AATATAAAAAAACTT-AACCTAAAAACCAATTATGAGATTATAA
129 AATATAAAAAAA-TTCAA-CTTAAAATCAATTATGAGATTATAA
* * * * * * * * * **
8439536 AATCATTGAAAGTGAGTAATAAGGCCTTCGAAAGCATGGGCGATTATAAATGGATTTTTCTTACC
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGTC
* * ** * * **
8439601 AATGTAT-GACTTTTTCTTCAGGTTTCTCGA-GTCAGACATTCAATTTTAATC-CGTTTAACCAA
66 AATGAATAG-CTTTTTCTTCATGTTTCTTAAGGT-AAACATTCAA-TATAATCTATTTTAACCAA
* * *
8439663 AAATGTAAAAAATTTCAACTTAAAATCAATTCTGAGATTATAA
128 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * ** ** * * * * * **
8439706 AACTATTTTAAGTAAGCGATAAAGCTTTTGGAGGCATGGATGACTATAAACAGACTTTTCTTGTC
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGTC
* * * * * * * * *
8439771 AATGAATGGCTATTTCTTGACGTTTTTTGAA-GCAACCATTCAATTATAA-CTGTTTTAACAAAA
66 AATGAATAGCTTTTTCTTCATGTTTCTT-AAGGTAAACATTCAA-TATAATCTATTTTAACCAAA
** * *
8439834 AATATAAAAATGTTTAACCT-AAATCAATTATGAGATTATAA
129 AATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* *
8439875 AACCATTTCAAGC-AGGTAATAAGGCTTTCGAAGG-TATGAGTGACTATAAATGGACTTTTCTTG
1 AACCATTTAAAGCGA-GTAATAAGGCTTTCGAAGGCT-TGGGTGACTATAAATGGACTTTTCTTG
* * * * * * * * *
8439938 -CAAATGCATGATG-TTTTTCTTTATTTTTCCTAAGGCAGACATTCAATTGTAATATGTTTTAAC
64 TC-AATGAAT-A-GCTTTTTCTTCATGTTTCTTAAGGTAAACATTCAA-TATAATCTATTTTAAC
* * * * * * *
8440001 CGATAATACAAAAAAA-TCAAGTTAAAATCACTTATGATATTATAT
125 CAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * ** * * * *
8440046 AAGCATTTGAAGTAAGTAATAAAGCTTTCGAAGGCATGGGTGACTATAAACGGACTTTTCTT-AC
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGTC
* * * * * * * *
8440110 TAATGAATGGCTATTTCTTCATATTTCTTGAA-GTAGAGATTCAATTATAATTTGTTTTAACTAA
66 -AATGAATAGCTTTTTCTTCATGTTTCTT-AAGGTAAACATTCAA-TATAATCTATTTTAACCAA
**********
8440174 AAATATAAAAANNNNNNNNNNAAAATCAATTATGAGATTAT-A
128 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * * ** * * * * *
8440216 AACCTATTTACAGCGAGTAATAATGCTTTCGAAGGGTTAAGTAACGATAAATGAACTTTT-GTGC
1 AACC-ATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGT
* * * * ** * * * * **
8440280 CAAGGGAT-GACTTTTGCTTTACATTTCTTGAGGTAAATATTCAATTATAATATATTCTAATTAA
65 CAATGAATAG-CTTTTTCTTCATGTTTCTTAAGGTAAACATTCAA-TATAATCTATTTTAACCAA
*********** *
8440344 AANNNNNNNNNNCTTTAACTTAAAATCAATTATGAGATTATAA
128 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * ** ** **
8440387 AGCCATTTAAAGCGAATAATAAGATTTTAAAAGGCTTGGGTGACTATAAATGGACTTTTCTTACC
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGTC
* ** * * **
8440452 AATGAATGGCTTTTTCTTTCACATTT-TTAAAGGCAGACATTCAATTATAATCTATTTTAACTGA
66 AATGAATAGCTTTTTC-TTCATGTTTCTT-AAGGTAAACATTCAA-TATAATCTATTTTAACCAA
* * * *
8440516 AAATGTAAAAAAAATT-AACTTATAATCAATTATGAGGTTATAG
128 AAATAT-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
** * * * * ** *
8440559 AATTATTTAAAGCGAGTAACAATGCTTTCAAAGG-TATGAGTGACTGCAAATGGACTTTTC-TCT
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCT-TGGGTGACTATAAATGGACTTTTCTTGT
* * * * * * *
8440622 CTAATGAATGGCTTTTACTTTATGTTT-TTCAAGGCAGACATTCAATTATAATATATTTTAACAA
65 C-AATGAATAGCTTTTTCTTCATGTTTCTT-AAGGTAAACATTCAA-TATAATCTATTTTAACCA
* * ***
8440686 AAAATATAAAAAAGTTCAACTTAAAATTAATTATGAGATTANNN
127 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
******* * * * * * *
8440730 NNNNNNNTAAAGTGAGTAATAAGGCTTTTGAAGGCATGGATGGCTATAAATGGACTTTTCTTGCC
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGTC
* * * * * **
8440795 AATGCATAGCTTTTTCTTCATGTTT-TCT--GATAAATAATCAATTATAATCTGTTTTAATAAAA
66 AATGAATAGCTTTTTCTTCATGTTTCT-TAAGGTAAACATTCAA-TATAATCTATTTTAACCAAA
*********
8440857 AATANNNNNNNNNNT-AACTTAAAATCAATTATGAGATTATAA
129 AATA-TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * * * * * * * * * * * *
8440899 ACCCGTCTAAAGTGAGTAACAAGACTTTCGAGGGCTTGAGTGATTACAAATGAACTTTTCGTGCC
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGTC
* * ** * ** * * * *
8440964 AATTG-ATGGCTTTTGCTTCACATTTCTCAAGACAGACAATCAATTATAATATATTTTAATCAAA
66 AA-TGAATAGCTTTTTCTTCATGTTTCTTAAGGTAAACATTCAA-TATAATCTATTTTAACCAAA
* * * *
8441028 AATATAAAAAAATTTAAATTAAAATTAATTATGAGATAATAA
129 AATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
** * * ** * * **
8441070 AGTCATTTAAAGCAAGTAATAAGGCTTTTGAAAACAT-GGT-AGCTATAAGTGGACTTTTCTTAC
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGA-CTATAAATGGACTTTTCTTGT
** ** * *
8441133 CAATGAAT-GACTTTTTCTTCATGTTTCTCGAGGTAGGCATTCAATTATAATCTGTTTTAACTAA
65 CAATGAATAG-CTTTTTCTTCATGTTTCTTAAGGTAAACATTCAA-TATAATCTATTTTAACCAA
* ** * * *********
8441197 AAATTTAAAACTATTTAACCTAAAATCAATTATGNNNNNNNNN
128 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* ** * * * * *
8441240 NACCATTTAAAGCGAGTAATAAGTTTTTCAAAAG-TATGAGTGACTATAAATGGACTTTTCGTGC
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCT-TGGGTGACTATAAATGGACTTTTCTTGT
* * * * * * * * * * *
8441304 CAAGGGATTA-CTTTTACTTTATGTTTCTCAAGATAGATATTCAATTACAATATATTTTAATCAA
65 CAA-TGAATAGCTTTTTCTTCATGTTTCTTAAGGTAAACATTCAA-TATAATCTATTTTAACCAA
* * * *
8441368 CAATGTAAAAAAATTCAATTTAAAATCAATTATGATATTATAA
128 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* ********** * * *
8441411 AGCCNNNNNNNNNNAGTAATAAGGCTTTAGAAGGCATGGGTGACTATAAATGGACCTTTCTTG-C
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGTC
* * * * * * * * *
8441475 TAATGAATGGCCTTTT-TTGATATTTCTTGAGGTAGACATTTAGTTATAATCCATTTTAACCAAA
66 -AATGAATAGCTTTTTCTTCATGTTTCTTAAGGTAAACATTCA-ATATAATCTATTTTAACCAAA
* * * ** * *
8441539 AATGTAAACATATTCTGCCTAAAATCGATTATGAGATTATAA
129 AATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * * ** * *
8441581 AACCATATAAAGCGAGTAATAACGCTTTCAAAGG-TATAAGTGACTATAAATGAACTTTTCATGT
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCT-TGGGTGACTATAAATGGACTTTTCTTGT
* * * * * ** * * **
8441645 CAATGGATGGCTTTTGCTTCTTGTTTAC-CAAGACAGACATTCAATTATAATATATTTTAATAAA
65 CAATGAATAGCTTTTTCTTCATGTTT-CTTAAGGTAAACATTCAA-TATAATCTATTTTAACCAA
* * * ** ****
8441709 AAATGT-AAAGAATTCAACTTAAAATCAAGTACAAGATTNNNN
128 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
****** * * * * *
8441751 NNNNNNTTAAAGCGAGTAATAATGCTTTTGAAGGCATGAGTGACTATAAAT-GAGCTGTTCTCT-
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGA-CTTTTCT-TG
* * * * * * * * * * * *
8441814 CCAATAAAT-GTCTTTTGT-TTTATTTTTCTTGAGATAGACATTTAATTTTTATAC-ATTTTGAT
64 TCAATGAATAG-CTTTT-TCTTCATGTTTCTTAAGGTAAACATTCAA-TATAAT-CTATTTTAAC
* * **********
8441876 GAAAAATATAAAAAAATTTAACTTAAANNNNNNNNNNAGATTATAA
125 CAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
** ** * * * * * *
8441922 AACCATTTAAAGTAAGTAACGAGGCTTTTGAAGACTTGAGTAACTCTAAATGGACTTTT-TATGC
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCT-TGT
* * * * * * * * * * * * *
8441986 CAATTG-ATGGCTTTTGCTTTACGTTTGTCAAGGCAGATATTCAATTGTAATATATTTTTATCAA
65 CAA-TGAATAGCTTTTTCTTCATGTTTCTTAAGGTAAACATTCAA-TATAATCTATTTTAACCAA
* * * *
8442050 AAATGTAAAAATATTCTACTTAAAATTAATTATGAGATTATAA
128 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * ************ * * *
8442093 AACCATTTAAAGCAAGTAATAAGGATTTNNNNNNNNNNNATAACTATAAATAGACTTTTGTTGTC
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGTC
* ** * **
8442158 AATGAATGATCATTTTT-TTCATGTTTCTCGAGGTAAACATTCAATTATAATATCCTTTAACC-A
66 AATGAAT-AGC-TTTTTCTTCATGTTTCTTAAGGTAAACATTCAA-TATAATCTATTTTAACCAA
* * * *
8442221 AAATGTAAAAAAA-TCTAACCT-AAATCAATCATGAAATTATAA
128 AAATATAAAAAAATTC-AACTTAAAATCAATTATGAGATTATAA
** * *
8442263 AACCATTTAAAATGAGTAATAAGGCTTTCGAAGGCATGGATGACTATAAATGGAC-TTTCTTG-C
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGTC
* * * ** * * * * * **
8442326 TAATGCATGGCTTTTTCTCCACATTT-ATAAGATAGAA-AATCAATTACAATCTGTTTTAATTAA
66 -AATGAATAGCTTTTTCTTCATGTTTCTTAAGGTA-AACATTCAA-TATAATCTATTTTAACCAA
* ********** *
8442389 AAATGTAAAAAAATTCNNNNNNNNNNCAATTATGAGGTTATAA
128 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * * * ** *
8442432 AACCATCTAAAGAGAGAAACAAGGCTTTTAAAGGCTTGGTTGACTATAAATGGA-TTTT-TTGCA
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTG--
* * ** * * ** * * *
8442495 TCAAT-AGATGGCTTTTACTTCACATTTCCTAAGATCGACTTTCAATTATAATATATTTTAATCA
64 TCAATGA-ATAGCTTTTTCTTCATGTTTCTTAAGGTAAACATTCAA-TATAATCTATTTTAACCA
* * * *
8442559 AAAATATAAAAAAATTTAACCTT-AAATCAATTTTAAGATTGTAA
127 AAAATATAAAAAAATTCAA-CTTAAAATCAATTATGAGATTATAA
** * ** * * *
8442603 AACCATTTAAAATGAGTAATAAGGCTTTTGAAATCTTGAGTGACTATAAATGGACTTTTCCTATC
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGTC
** * * * *
8442668 AATGAAT-GCTTTTTTCTTCCA-GTCCCCTAAGGTAAACATTCAATTATAATTTGTTTTAACTAA
66 AATGAATAGC-TTTTTCTT-CATGTTTCTTAAGGTAAACATTCAA-TATAATCTATTTTAACCAA
* ** * * *
8442731 AAATGTAAAAGCATTTAACTTAAAATCAATTATGAGATTCTAN
128 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
********* * *
8442774 NNNNNNNNNAAGCAAGTAATAAGGCCTTT-GAAGG-TATGAGTGACTATAAATGGACCTTTTC-T
1 AACCATTTAAAGCGAGTAATAAGG-CTTTCGAAGGCT-TGGGTGACTATAAATGGA-CTTTTCTT
* * * * * *
8442836 ATCAATGCATAGCATTTTCTTCACAT-TTTC-AAAGGTAGACATTTAATGATAATCTATTTTAAC
63 GTCAATGAATAGCTTTTTCTT--CATGTTTCTTAAGGTAAACATTCAAT-ATAATCTATTTTAAC
* * **********
8442899 AAAAAATACAAAAAAATTCAANNNNNNNNNNATTATGAGATTATAA
125 CAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
** * * * * * * *
8442945 AACCATTTAAAATGAATAATGAGGCTTTCAAAGACTTCGGTGACTATTAATGGACTTTTCTT-AC
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGTC
********* * * ** * *
8443009 NNNNNNNNNNCTTTTTCTTCATATTT-TCTGAGGTCGACATTCAATTATAATATGTTTTAACCAA
66 -AATGAATAGCTTTTTCTTCATGTTTCT-TAAGGTAAACATTCAA-TATAATCTATTTTAACCAA
* * *
8443073 AAATATAAAAACAATT-GACTTAAGATCAATTAGGAGATTATAA
128 AAATATAAAAA-AATTCAACTTAAAATCAATTATGAGATTATAA
* ** * * *
8443116 AACCATTTAAAGCGAGTAATAAGGCTTTCAAATCCATGGGTGACTATAAATGAACTTTTCTTATC
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGTC
* * * * * **
8443181 AATGAATGGCTTTTTCTTCACAT-TTTC-TATGGCAAACATTCAATTATAATATGTTTTAACTGA
66 AATGAATAGCTTTTTCTT--CATGTTTCTTAAGGTAAACATTCAA-TATAATCTATTTTAACCAA
* * * * *
8443244 AAATGTAAAAGAATTCAACCTAAAATCAATTATTAGATTA-GA
128 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * * *
8443286 AA-CATTTTGTAGGAGCGGGTTAAT-A-G-ATTCGAAGGTCGATGGAAGCTGGCTGGCAACTGAT
1 AACCA--TT-TA-AAGCGAG-TAATAAGGCTTTCGAAGG-C--T------TGGGT-G--ACT-AT
** * * * *
8443347 AAATGGACTTTTCTTCCCAATGCATAGCTTTTTTTTCATGTTTCTTGAA-ATAAACATTCAGTTA
48 AAATGGACTTTTCTTGTCAATGAATAGCTTTTTCTTCATGTTTCTT-AAGGTAAACATTCA-ATA
* * * * * * *
8443411 TAATCTGTTTTAATCAAAAATGT-AAAAACTTCAACTCAAAATCAATTATGAGGTTTTAA
111 TAATCTATTTTAACCAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * * * * * * *
8443470 AGCCATCTAAAGTGATTAAAAAGGCTTTCGAAGGCTTGGGTAACTATAAATGAACTTTT-TGTGC
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCT-TGT
* * *** * * ** *
8443534 CAAT-AGATGGCTTTTGT-TACATGTTT-TCTAAAACAGACATTTAATTATAAAATA-TTTAATC
65 CAATGA-ATAGCTTTT-TCTTCATGTTTCT-TAAGGTAAACATTCAA-TATAATCTATTTTAACC
* * * * *
8443595 AAAAATGTAAAACAATTTAACTTAAAATGAATTTTGAGATTATAA
126 AAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * * * * * *
8443640 AATCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCTTGGTTGACTATATATGGACTTTTATTGTT
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGTC
* * * * * *
8443705 AGTGAATGGCTTTTTCCTCATGTTTCTCAAGGTAGACATTCAATTATAATC-AGTTTTAACAAAA
66 AATGAATAGCTTTTTCTTCATGTTTCTTAAGGTAAACATTCAA-TATAATCTA-TTTTAACCAAA
* * * *
8443769 AATATAACAAAATTCAACTTAAAATTAACTATAAGATTATAA
129 AATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * * **
8443811 AACCATTTAAAGCAAGTAATAAGGCTTTCGACGGCATGGGTGACTATAAATAAACTTTTCTTGTC
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGTC
* * * * * * * *
8443876 AAGGAAT-GATTTTTTCTTCATGTTTCCTGAGGCAGATAATCAATTATAATCTATTTTAACCAAA
66 AATGAATAG-CTTTTTCTTCATGTTTCTTAAGGTAAACATTCAA-TATAATCTATTTTAACCAAA
* *
8443940 AATATAAAAAAATTCAA-TCTAAAATTAACTATGAGATTATAA
129 AATATAAAAAAATTCAACT-TAAAATCAATTATGAGATTATAA
* * * * * *
8443982 AACCATTGAAAGCAAGTAATAAGACCTTCGAAGGCATGGGCT-ACTATAAATGGACTTTTCTTGC
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGG-TGACTATAAATGGACTTTTCTTGT
* * * * * * ** *
8444046 CAATGCATAGCTTTTTCTTTATGTTTCCTAAGGCAGATATTCAATATAATCCGTTTTAACTAAAA
65 CAATGAATAGCTTTTTCTTCATGTTTCTTAAGGTAAACATTCAATATAATCTATTTTAACCAAAA
* * *
8444111 ATGTAAAAAAAATTCAACTTCAGATCAATTATGAGATTATAA
130 ATAT-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
** * * *
8444153 AATTATTTGAAGTGAGTAATAAGGCATTT-GAAGGCTCGGGTGACTATAAATGGACTTTT-TTG-
1 AACCATTTAAAGCGAGTAATAAGGC-TTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGT
* * * * * * * *
8444215 CTAATGAAT-GGTTTTTCTTCATATTTTTTGAGGCAAACATTTCATTATAATCTGTTTTAACTAA
65 C-AATGAATAGCTTTTTCTTCATGTTTCTTAAGGTAAACA-TTCAATATAATCTATTTTAACCAA
* * * * *
8444279 AACTATATAAGAATTCAACTTAAAATCATTTATGAGGTTATAA
128 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * * *
8444322 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGACATAGGTGACTATAAATGGACTTTTCTT-CC
1 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGTC
* * * * * * * * *
8444386 TAATAAATGGCTTTTTCTTTACGTTTCTCTAA-GCAGACATTCTATTATATTCTATTTTAACTAA
66 -AATGAATAGCTTTTTCTTCATGTTTCT-TAAGGTAAACATTC-AATATAATCTATTTTAACCAA
* * *
8444450 AACTGTAAAAATATTCAACTTAAAATCAATTATGAGATTATAA
128 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
8444493 AA
1 AA
8444495 GGGTTTCGAA
Statistics
Matches: 6280, Mismatches: 1923, Indels: 792
0.70 0.21 0.09
Matches are distributed among these distances:
167 31 0.00
168 42 0.01
169 778 0.12
170 1417 0.23
171 3267 0.52
172 356 0.06
173 19 0.00
174 12 0.00
175 7 0.00
176 14 0.00
177 11 0.00
178 11 0.00
179 8 0.00
180 13 0.00
181 9 0.00
182 20 0.00
183 44 0.01
184 69 0.01
185 11 0.00
186 7 0.00
187 6 0.00
190 11 0.00
191 11 0.00
192 18 0.00
193 1 0.00
196 1 0.00
198 2 0.00
199 7 0.00
200 4 0.00
201 11 0.00
202 10 0.00
203 6 0.00
204 1 0.00
206 4 0.00
207 3 0.00
208 12 0.00
209 14 0.00
210 8 0.00
211 1 0.00
212 3 0.00
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.34
Consensus pattern (170 bp):
AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGTC
AATGAATAGCTTTTTCTTCATGTTTCTTAAGGTAAACATTCAATATAATCTATTTTAACCAAAAA
TATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
Found at i:8436637 original size:340 final size:337
Alignment explanation
Indices: 8435725--8449900 Score: 5176
Period size: 341 Copynumber: 41.5 Consensus size: 337
8435715 NNNNNNNNNN
* * * *** * *
8435725 AACCATTTAACGGGACTAATAAGGCTTTTAAAGGCATGGGTGACTATAAATGGACTCTTT-TTGT
1 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGTGACTATAAATAGACT-TTTCTTGT
* ** * * *
8435789 CAATGAATGGCTTTTTTTTTATGTTTCTCAAGACAAACATTCAAATATAATTTCTTTTAACCAAA
65 CAATGAATAGC-TTTTTTTTATGTTTCTCAAGGTAAACATTCAATTATAATCTATTTTAA-CAAA
* * * ** *
8435854 AATGTACAAAAATTCAACCTAAAAGAAATTATGAGATTATAAAATCATTTAAAGCGAGTAATAAG
128 AATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAG
* * * *
8435919 GCTTTCGAAGGCT-TGAGTGACTATAAATGGACTTTAT-TTGTCAATGAATAGCTTTTTCTTTAT
193 GCTTTCGAAGG-TATGGGTGACTATAAATGGACTTT-TCTTGTCAATGAATGGCTTTTTCTTCAC
* * *
8435982 GTTTTTAGAGGCAGACATTCAACTTTAATCTTTTTTAACTAAAAATATAAAAAAATTCAACTTAA
256 GTTTTTA-AGGCAGACATTCAA-TATAATCTATTTTAACTAAAAATA-CAAAAAATTCAACTTAA
8436047 AATCAATTATGAGATTATAA
318 AATCAATTATGAGATTATAA
* * ** * * * * *
8436067 AATCATTTGAAGCGAGTAATAAAAC-TCTTGAAGGCATGGGTGACTATGAATGGACTTTTCTTAT
1 AACCATTTAAAGCGAGTAATAAGGCTTC-CGAAGGCATGAGTGACTATAAATAGACTTTTCTTGT
* * * *
8436131 CAATGAATGGCTTTTTTTTCACGTTTC-CTAGGGTAAACATTCAATTATAGTCTATTTTAACAAA
65 CAATGAATAGCTTTTTTTT-ATGTTTCTC-AAGGTAAACATTCAATTATAATCTATTTTAAC-AA
* * *
8436195 AAATATAAAAAAATTCAACCTAAAATCAATTATGAGATTATAAAACTATTTAAAGCAAGTAATAA
127 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAA
* * * *
8436260 GGCCTTCGAAGGTATGGGTGACTATAAATGGACTTTTCTTGTTAATGCATGGCATTTTCTTCACG
192 GGCTTTCGAAGGTATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTTCACG
* *
8436325 TTTTTAGAGGTAGACATTCAATGATAATCTATTTTAAC-AAAACATACAAAAATATTTAACTTAA
257 TTTTTA-AGGCAGACATTCAAT-ATAATCTATTTTAACTAAAA-ATACAAAAA-ATTCAACTTAA
* *
8436389 AATCAAGTATGAGATTATAG
318 AATCAATTATGAGATTATAA
* *
8436409 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGG-TTCGAGTGACTATAAATAGACTTTTCTTAT
1 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCAT-GAGTGACTATAAATAGACTTTTCTTGT
* **
8436473 CAATGAATAG-TTTTTTTTATGTTTCTTAACATAAACATTCAATTATAATCTATTTTAATCAAAA
65 CAATGAATAGCTTTTTTTTATGTTTCTCAAGGTAAACATTCAATTATAATCTATTTTAA-CAAAA
* * ** * * *
8436537 ATATAAAAAAATTTAATTTAAAATTGAGTATGAGATCATAAAACCATTTAAAGCGAGTAATAATG
129 ATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGG
* * * * * *
8436602 CTTTTGAAGGTATGAGTGACTATAATTCGACTTTTCTTGTCAATGAATGACTTTTTCTTCATGTT
194 CTTTCGAAGGTATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTTCACGTT
* * * ** *
8436667 TCTTAAGACAAACATTCAATCATAATTTGA-TTTAACTAAAAATGTAAAAATATTCAACCTAAAA
259 T-TTAAGGCAGACATTCAAT-ATAATCT-ATTTTAACTAAAAATACAAAAA-ATTCAACTTAAAA
8436731 TCAATTATGAGATTATAA
320 TCAATTATGAGATTATAA
* * * * * * *
8436749 AACCATTTAAAGTGAGTAATAAGGCTTTCGAAGACTTGAGTGGCTATTAATAGACTTTTCTTGCC
1 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTC
* * * ** * * *
8436814 AATGAATA-ATATTTTCTTCATGTTT-TCGGAGGTAAACATTCAGCTATAATATGTTATAACTAA
66 AATGAATAGCT-TTTT-TTTATGTTTCTC-AAGGTAAACATTCAATTATAATCTATTTTAAC-AA
*
8436877 AAAT-GAAAAAAATTCAACTTAAAATCAATTATGAGATTAT-AAACCATTTAAAGCGAGTAATAA
127 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAA
* * * *
8436940 GG-TTCTTGAAGGCATGGGTGACTATAAATGAACTTTTCTTG-CTAATGAATGG-TTTTGTTTTC
192 GGCTT-TCGAAGGTATGGGTGACTATAAATGGACTTTTCTTGTC-AATGAATGGCTTTT-TCTTC
* * * * * *
8437002 ACGTTTCCTAAGGTAAACATTCAATTATAATCTGTTTTAACAAAAAATATCAAAAAATTCAACCT
254 ACGTTT-TTAAGGCAGACATTCAA-TATAATCTATTTTAACTAAAAATA-CAAAAAATTCAACTT
* *
8437067 AAAATTAATTATGAGATTAAAA
316 AAAATCAATTATGAGATTATAA
* * * *
8437089 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTAT-AATTGAACTTTTCTTGC
1 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGTGACTATAAATAG-ACTTTTCTTGT
* * * * * *
8437153 CAATGAATAGCTTTTTCTTCATGGTTCCCATGGTAGACATTCAATTATAATCTGTTTTAACCAAA
65 CAATGAATAGCTTTTT-TTTATGTTTCTCAAGGTAAACATTCAATTATAATCTATTTTAA-CAAA
* * * **
8437218 AATATTAAAAAATTTAACTTCAAATCAATTATGAGATTATAAAATGATTTAAAGCGAGTAATAAG
128 AATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAG
* * * *
8437283 GCTTTCGAAAGCT-TGGGTGACTATAAATGGACTTTTCTTATCAA-AAACTGACTTTTTCTTCAC
193 GCTTTCG-AAGGTATGGGTGACTATAAATGGACTTTTCTTGTCAATGAA-TGGCTTTTTCTTCAC
* *** * *
8437346 ACTTCCCATGGCAGACATTCAAATATAATCTATTTTAACTAAAACTA-AAAAAATTCAACTTAAA
256 -GTTTTTAAGGCAGACATTC-AATATAATCTATTTTAACTAAAAATACAAAAAATTCAACTTAAA
* *
8437410 ATAAATTATTAGATTATAA
319 ATCAATTATGAGATTATAA
* * ********** * * * * *
8437429 AACGATTTAAAGCGAGTGATAAGNNNNNNNNNNGCTTGGGTGACTATAAATGGGCTTTTCATG-C
1 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTC
* * * * * *
8437493 GAA-GAAATGGCTTTTTCTTCATGCTTTC-CATGGCAAACATTCTATTATAATCTGTTTTAACCA
66 -AATG-AATAGCTTTTT-TTTATG-TTTCTCAAGGTAAACATTCAATTATAATCTATTTTAA-CA
********** *
8437556 AAAATAT-AAAANNNNNNNNNNAAAATCAATTATGAGATTATAAAACAATTTAAAG-GAAGTAAT
126 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCG-AGTAAT
* * * *
8437619 AAGGCTTTCAAAGGCT-TGAGTGACTATAAATGGACTTTTCTTGTTAATGAATGACTTTTTCTTC
190 AAGGCTTTCGAAGG-TATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTTC
* **** * * * * * ********* *
8437683 AAAGTACCCATGGTACACATCCAATTATAATCTGTTTTAACTAAAAANNNNNNNNNNTTTAACTT
254 -ACGTTTTTAAGGCAGACATTCAA-TATAATCTATTTTAACTAAAAA-TACAAAAAATTCAACTT
* *
8437748 AAAATCAATTATGGGATTATTA
316 AAAATCAATTATGAGATTATAA
* * * * * * * * * *
8437770 AACTAGTTAAAGCGGGTAATAAGGGTTTCGAACGTAT-AGGTGGCTATAAATAGACTTTTTTTGC
1 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGA-GTGACTATAAATAGACTTTTCTTGT
* * ** * * * *
8437834 CAATGAAT-GCCTTTTTGTTCACGGCTCCCATGGTAGATA-ATT-AATTATAATATGTTTTAATC
65 CAATGAATAG-CTTTTT-TTTATGTTTCTCAAGGTA-A-ACATTCAATTATAATCTATTTTAA-C
* * **
8437896 AAAAATGTAAAAAAATTCAACCTAAAAAT-AATTATGA-AGTTATAAAACCAACTAAAGCGAGTA
125 AAAAATATAAAAAAATTCAA-CTTAAAATCAATTATGAGA-TTATAAAACCATTTAAAGCGAGTA
* * * *
8437959 ATAAGGCTTTTGAAGGCT-TGGGTGACTATAAATGGACGTTTCATGTCAATGAATAGCTTTTTCT
188 ATAAGGCTTTCGAAGG-TATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCT
* ** * * * ************************
8438023 TCATGTTTCCCAAAGTAGACATTCAATTGTAATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
252 TCACGTTT-TTAAGGCAGACATTCAA-TATAATCT------ATTTTAACTAAAAATACAAAAAAT
*****************************
8438088 NNNNNNNNNNNNNNNNNNNNNNNNNNNNN
309 TCAACTTAAAATCAATTATGAGATTATAA
********************************** * * * * ***
8438117 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACT-ATGAGATTATAAA-A-CCATTTAAA
1 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGC-A-TGA-GTGACTATAAATAGACTTTTCTT
* ** * ** * * * ***
8438179 G-CAA-GTAATAAGGCTTTTCAAAGATAAAGGTGACTACAA-ATGAACTTTTCTTAGCAATGAAT
63 GTCAATG-AAT-A-GCTTTT-----TTTTATGTTTCT-CAAGGTAAAC-ATTC--AATTAT-AAT
** *** * ** * * ** ** * * *
8438241 GGCT-TTTTCTTC-ATGTTCCCTGAGACAAACTTTCAA-TCAGAATCTGTTTTAACCAAAAATGT
115 --CTATTTT-AACAAAAAT--AT-A-A-AAAAATTCAACTTAAAATC--AATT-A-TGAGATTAT
** * * * * * * * ** * ** * * * *
8438303 AAAAAAATAT-AACCTAAATCCATTAAGAGATTATCAAACCATTTAAAGCGAGTA-ACA-GGCCT
168 AAAACCATTTAAAGC-GAGT--AATAAG-GCTT-TCGAA-GGTAT-GGGTGACTATAAATGGACT
* * * * * * ** *
8438365 TTCGAAGACTTGAGTGACTGTAAATGGACTTCTTGTGCCATTGGATGGCTTTT---GCTTCACGT
226 TT-----TCTT--GTCAATG--AATGG-CTT-TT-T--C-TT-CA-CGTTTTTAAGGC-AGACAT
*** * ** * * * * ** * * * *
8438427 TTTTTGAGACAGATA-TTCAATTATAATATA-TATTAGTTAAAAATATAAAAAAATTAAACTNNN
273 TCAAT-ATA-ATCTATTTTAACTA-AAAATACAAAAAATT-CAACT-T---AAAA-TCAA-T---
8438490 NNNNNNNTATGAGATTATAA
325 -------TATGAGATTATAA
* * ** * *
8438510 AACCATTT-AAGTTGAGTAATAATGCTTTTGAAAGCATGAGTGACTATAAATAAACTTTTCTCT-
1 AACCATTTAAAG-CGAGTAATAAGGCTTCCGAAGGCATGAGTGACTATAAATAGACTTTTCT-TG
* * * * * * * * * *
8438573 CCAACGGAT-GTCTTTTGCTTCATGTTT-TCTAAGATAGACATTCAATTTTTATATATTTTAACA
64 TCAATGAATAG-CTTTT-TTTTATGTTTCTC-AAGGTAAACATTCAATTATAATCTATTTTAAC-
*********************** *
8438636 AAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGANNNNNNNNNNNNNNNNNNNNNNNAAC
125 AAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * * * * * * *
8438701 GATGCTTTCGAAGGCT-TGAGTAACTATAAATGGACTTTTCGTGCCAATGGATGGCTTTTGCTTC
190 AAGGCTTTCGAAGG-TATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTTC
* *** * * * * * ** *
8438765 ACATTTCCCGAGGCAAACATTTAATTATAATATGTTTTTA-TCAAAAATGTAAAAATATTCAACC
254 ACGTTT-TTAAGGCAGACATTCAA-TATAATCTATTTTAACT-AAAAATACAAAAA-ATTCAACT
*
8438829 TAAACTCAATTATGAGATTATAA
315 TAAAATCAATTATGAGATTATAA
* * * * * * * *
8438852 AACAATTTAAAGCGGGTAAGAA-G-TTCGTCAAAGGTATGAGTGACTATAAATAGATTTTTCATA
1 AACCATTTAAAGCGAGTAATAAGGCTTC--CGAAGGCATGAGTGACTATAAATAGACTTTTCTTG
* * * * * * *
8438915 TCAATGCATAGCTTTTTCCTCATGTTTTTCAAGGCAGACATTCAATTATAATCTATTTTGACTAA
64 TCAATGAATAGCTTTTT-TTTATGTTTCTCAAGGTAAACATTCAATTATAATCTATTTTAAC-AA
* * * * *
8438980 AAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATACAACCATTTGAAGTGAGTGATAA
127 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAA
* ** *** *
8439045 GGCTTTTGAAGGCGTGGGTGACTATAAACAAACTTTTCTTGTCAATGAATGGCTATTTCTTCACG
192 GGCTTTCGAAGGTATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTTCACG
** * * * * * * * * ***
8439110 TTTCCAAGGCAAACATTCAATTATAATATGTTTTAACCAAAAATATAAAAACGTTTAACCTANNN
257 TTTTTAAGGCAGACATTCAA-TATAATCTATTTTAACTAAAAATACAAAAA-ATTCAACTTAAAA
*******
8439175 NNNNNNNTGAGATTATAA
320 TCAATTATGAGATTATAA
* * * * * * *
8439193 AACTATTTAAAGTGGGTAATAAGACCTT-CGAAGGTATGAGTGACTATAAATGGACTTTTCTT-A
1 AACCATTTAAAGCGAGTAATAAG-GCTTCCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGT
* * * * * * *
8439256 CAAATGCATGATG-TGTTCTTTATGTTTC-CTAAGGCAGACATTCAATTATAATTTGTTTTAACC
65 C-AATGAAT-A-GCTTTTTTTTATGTTTCTC-AAGGTAAACATTCAATTATAATCTATTTTAA-C
* * * ********** * * * *
8439319 AATAATGTAAAAAAATTTAACTTAAAANNNNNNNNNNGATAATAAAACTATTTAAAGCGAATAGT
125 AAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * * * * *
8439384 GAGGCTTTCGAA-GTCATGTGTGACAATAAATGAACTTTTCTTGCCAATGAATGACTTTTTCTTC
190 AAGGCTTTCGAAGGT-ATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTTC
* * * * * *
8439448 ACGTTTCCTAAGACAAACATTCAATTATAATTTGTTTTAACTAAAAATATAAAAAAACTT-AACC
254 ACGTTT-TTAAGGCAGACATTCAA-TATAATCTATTTTAACTAAAAATA-CAAAAAA-TTCAA-C
* *
8439512 TAAAAACCAATTATGAGATTATAA
314 TTAAAATCAATTATGAGATTATAA
* * * * * * * * * **
8439536 AATCATTGAAAGTGAGTAATAAGGCCTT-CGAAAGCATGGGCGATTATAAATGGATTTTTCTTAC
1 AACCATTTAAAGCGAGTAATAAGG-CTTCCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGT
* * * * * * **
8439600 CAATGTAT-GACTTTTTCTTCAGGTTTCTCGA-GTCAGACATTCAATTTTAATC-CGTTTAACCA
65 CAATGAATAG-CTTTTT-TTTATGTTTCTCAAGGT-AAACATTCAATTATAATCTATTTTAA-CA
* * * * * ** **
8439662 AAAATGTAAAAAATTTCAACTTAAAATCAATTCTGAGATTATAAAACTATTTTAAGTAAGCGATA
126 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * * * ** * *
8439727 AAGCTTTTGGAGGCATGGATGACTATAAACAGACTTTTCTTGTCAATGAATGGCTATTTCTTGAC
191 AGGCTTTCGAAGGTATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTTCAC
* * * * * *
8439792 GTTTTTTGAA-GCA-ACCATTCAATTATAA-CTGTTTTAACAAAAAATATAAAAATGTTTAACCT
256 G-TTTTT-AAGGCAGA-CATTCAA-TATAATCTATTTTAACTAAAAATACAAAAA-ATTCAACTT
8439854 -AAATCAATTATGAGATTATAA
316 AAAATCAATTATGAGATTATAA
* * * *
8439875 AACCATTTCAAGC-AGGTAATAAGGCTTTCGAAGGTATGAGTGACTATAAATGGACTTTTCTTG-
1 AACCATTTAAAGCGA-GTAATAAGGCTTCCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGT
* * * * * * *
8439938 CAAATGCATGATG-TTTTTCTTTATTTTTC-CTAAGGCAGACATTCAATTGTAATATGTTTTAAC
65 C-AATGAAT-A-GCTTTTT-TTTATGTTTCTC-AAGGTAAACATTCAATTATAATCTATTTTAA-
* * * * * * * * * **
8440001 CGATAATACAAAAAAA-TCAAGTTAAAATCACTTATGATATTATATAAGCATTTGAAGTAAGTAA
124 CAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAA
* * * * *
8440065 TAAAGCTTTCGAAGGCATGGGTGACTATAAACGGACTTTTCTT-ACTAATGAATGGCTATTTCTT
189 TAAGGCTTTCGAAGGTATGGGTGACTATAAATGGACTTTTCTTGTC-AATGAATGGCTTTTTCTT
** * * * * * *******
8440129 CATATTTCTTGAA-GTAGAGATTCAATTATAATTTGTTTTAACTAAAAATATAAAAANNNNNNNN
253 CACGTTT-TT-AAGGCAGACATTCAA-TATAATCTATTTTAACTAAAAATACAAAAA-ATTCAAC
**
8440193 NNAAAATCAATTATGAGATTAT-A
314 TTAAAATCAATTATGAGATTATAA
* * * ** * * * *
8440216 AACCTATTTACAGCGAGTAATAATGCTTTCGAAGGGTTAAGTAACGATAAAT-GAACTTTT-GTG
1 AACC-ATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGTGACTATAAATAG-ACTTTTCTTG
* * * * ** ** * * * *
8440279 CCAAGGGAT-GACTTTTGCTTTACATTTCTTGAGGTAAATATTCAATTATAATATATTCTAATTA
64 TCAATGAATAG-CTTTT-TTTTATGTTTCTCAAGGTAAACATTCAATTATAATCTATTTTAA-CA
*********** * * *
8440343 AAANNNNNNNNNNCTTTAACTTAAAATCAATTATGAGATTATAAAGCCATTTAAAGCGAATAATA
126 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
** ** **
8440408 AGATTTTAAAAGGCT-TGGGTGACTATAAATGGACTTTTCTTACCAATGAATGGCTTTTTCTTTC
191 AGGCTTTCGAAGG-TATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTC-TTC
* * *
8440472 ACATTTTTAAAGGCAGACATTCAATTATAATCTATTTTAACTGAAAATGTAAAAAAAATT-AACT
254 ACGTTTTT-AAGGCAGACATTCAA-TATAATCTATTTTAACT-AAAA-ATACAAAAAATTCAACT
* * *
8440536 TATAATCAATTATGAGGTTATAG
315 TAAAATCAATTATGAGATTATAA
** * * * * * ** * *
8440559 AATTATTTAAAGCGAGTAACAATGCTTTCAAAGGTATGAGTGACTGCAAATGGACTTTTC-TCTC
1 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTC
* * * * * *
8440623 TAATGAATGGCTTTTACTTTATGTTTTTCAAGGCAGACATTCAATTATAATATATTTTAACAAAA
66 -AATGAATAGCTTTT-TTTTATGTTTCTCAAGGTAAACATTCAATTATAATCTATTTTAAC-AAA
* * ********** *
8440688 AATATAAAAAAGTTCAACTTAAAATTAATTATGAGATTANNNNNNNNNNTAAAGTGAGTAATAAG
128 AATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAG
* * * * * * * *
8440753 GCTTTTGAAGGCATGGATGGCTATAAATGGACTTTTCTTGCCAATGCATAGCTTTTTCTTCATGT
193 GCTTTCGAAGGTATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTTCACGT
** * * * * ********
8440818 TTTCT--GATAAATAATCAATTATAATCTGTTTTAA-TAAAAAATANNNNNNNNNNT-AACTTAA
258 TTT-TAAGGCAGACATTCAA-TATAATCTATTTTAACT-AAAAATA--CAAAAAATTCAACTTAA
8440879 AATCAATTATGAGATTATAA
318 AATCAATTATGAGATTATAA
* * * * * * * * * * * * *
8440899 ACCCGTCTAAAGTGAGTAACAAGACTTTCGAGGGCTTGAGTGATTACAAAT-GAACTTTTCGTGC
1 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGTGACTATAAATAG-ACTTTTCTTGT
* * * ** ** * * *
8440963 CAATTG-ATGGCTTTTGCTTCACATTTCTCAAGACAGACAATCAATTATAATATATTTTAATCAA
65 CAA-TGAATAGCTTTT-TTTTATGTTTCTCAAGGTAAACATTCAATTATAATCTATTTTAA-CAA
* * * * ** *
8441027 AAATATAAAAAAATTTAAATTAAAATTAATTATGAGATAATAAAGTCATTTAAAGCAAGTAATAA
127 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAA
* *** * ** * *
8441092 GGCTTTTGAAAACAT-GGT-AGCTATAAGTGGACTTTTCTTACCAATGAATGACTTTTTCTTCAT
192 GGCTTTCGAAGGTATGGGTGA-CTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTTCAC
** * * * ** * * *
8441155 GTTTCTCGAGGTAGGCATTCAATTATAATCTGTTTTAACTAAAAATTTAAAACTATTTAACCTAA
256 GTTT-TTAAGGCAGACATTCAA-TATAATCTATTTTAACTAAAAATACAAAA-AATTCAACTTAA
*********
8441220 AATCAATTATGNNNNNNNNN
318 AATCAATTATGAGATTATAA
* ** * * * * * * *
8441240 NACCATTTAAAGCGAGTAATAAGTTTTTCAAAAGTATGAGTGACTATAAATGGACTTTTCGTGCC
1 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTC
* * * * * * * * *
8441305 AAGGGATTA-CTTTTACTTTATGTTTCTCAAGATAGATATTCAATTACAATATATTTTAATCAAC
66 AA-TGAATAGCTTTT-TTTTATGTTTCTCAAGGTAAACATTCAATTATAATCTATTTTAA-CAAA
* * * * **********
8441369 AATGTAAAAAAATTCAATTTAAAATCAATTATGATATTATAAAGCCNNNNNNNNNNAGTAATAAG
128 AATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAG
* * * * * **
8441434 GCTTTAGAAGGCATGGGTGACTATAAATGGACCTTTCTTG-CTAATGAATGGCCTTTT-TTGATA
193 GCTTTCGAAGGTATGGGTGACTATAAATGGACTTTTCTTGTC-AATGAATGGCTTTTTCTTCACG
* * * * * * ** * ** *
8441497 TTTCTTGAGGTAGACATTTAGTTATAATCCATTTTAACCAAAAATGTAAACATATTCTGCCTAAA
257 TTT-TTAAGGCAGACATTCA-ATATAATCTATTTTAACTAAAAATACAAA-AAATTCAACTTAAA
*
8441562 ATCGATTATGAGATTATAA
319 ATCAATTATGAGATTATAA
* * * * * * *
8441581 AACCATATAAAGCGAGTAATAACGCTTTCAAAGGTATAAGTGACTATAAAT-GAACTTTTCATGT
1 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGTGACTATAAATAG-ACTTTTCTTGT
* * * ** * * *
8441645 CAATGGATGGCTTTTGCTTCT-TGTTTAC-CAAGACAGACATTCAATTATAATATATTTTAATAA
65 CAATGAATAGCTTTT--TTTTATGTTT-CTCAAGGTAAACATTCAATTATAATCTATTTTAACAA
* * * ** **********
8441708 AAA-ATGTAAAGAATTCAACTTAAAATCAAGTACAAGATTNNNNNNNNNNTTAAAGCGAGTAATA
127 AAATAT-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * * * * * *
8441772 ATGCTTTTGAAGGCATGAGTGACTATAAAT-GAGCTGTTCTCT-CCAATAAATGTCTTTTGT-TT
191 AGGCTTTCGAAGGTATGGGTGACTATAAATGGA-CTTTTCT-TGTCAATGAATGGCTTTT-TCTT
* ** * ** * * * * * *
8441834 TATTTTTCTTGAGATAGACATTTAATTTTTATAC-ATTTTGA-TGAAAAATATAAAAAAATTTAA
253 CACGTTT-TTAAGGCAGACATTCAA-TATAAT-CTATTTTAACT-AAAAATA-CAAAAAATTCAA
**********
8441897 CTTAAANNNNNNNNNNAGATTATAA
313 CTTAAAATCAATTATGAGATTATAA
** ** ** * * * * * *
8441922 AACCATTTAAAGTAAGTAACGAGGCTTTTGAAGACTTGAGTAACTCTAAATGGACTTTT-TATGC
1 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGTGACTATAAATAGACTTTTCT-TGT
* * * * * * * * * *
8441986 CAATTG-ATGGCTTTTGCTTTACGTTTGTCAAGGCAGATATTCAATTGTAATATATTTTTATCAA
65 CAA-TGAATAGCTTTT-TTTTATGTTTCTCAAGGTAAACATTCAATTATAATCTA-TTTTAACAA
* * * * *
8442050 AAATGTAAAAATATTCTACTTAAAATTAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAA
127 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAA
* ************ * * * *
8442115 GGATTTNNNNNNNNNNNATAACTATAAATAGACTTTTGTTGTCAATGAATGATCATTTTT-TTCA
192 GGCTTTCGAAGGTATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATG-GC-TTTTTCTTCA
* ** * * * ** * * *
8442179 TGTTTCTCGAGGTAAACATTCAATTATAATATCCTTTAACCAAAATGTA-AAAAAA-TCTAACCT
255 CGTTT-TTAAGGCAGACATTCAA-TATAATCTATTTTAACTAAAA-ATACAAAAAATTC-AACTT
* *
8442242 -AAATCAATCATGAAATTATAA
316 AAAATCAATTATGAGATTATAA
** * *
8442263 AACCATTTAAAATGAGTAATAAGGCTTTCGAAGGCATG-GATGACTATAAATGGAC-TTTCTTG-
1 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAG-TGACTATAAATAGACTTTTCTTGT
* * ** ** * * * * * *
8442325 CTAATGCATGGCTTTTTCTCCACATTTAT-AAGATAGAA-AATCAATTACAATCTGTTTTAATTA
65 C-AATGAATAGCTTTTT-TTTATGTTTCTCAAGGTA-AACATTCAATTATAATCTATTTTAA-CA
* ********** * * * * *
8442388 AAAATGTAAAAAAATTCNNNNNNNNNNCAATTATGAGGTTATAAAACCATCTAAAGAGAGAAACA
126 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
** * *
8442453 AGGCTTTTAAAGGCT-TGGTTGACTATAAATGGA-TTTT-TTGCATCAAT-AGATGGCTTTTACT
191 AGGCTTTCGAAGG-TATGGGTGACTATAAATGGACTTTTCTTG--TCAATGA-ATGGCTTTTTCT
* * * * * * *
8442514 TCACATTTCCTAAGATC-GACTTTCAATTATAATATATTTTAA-TCAAAAATATAAAAAAATTTA
252 TCACGTTT-TTAAG-GCAGACATTCAA-TATAATCTATTTTAACT-AAAAATA-CAAAAAATTCA
* * *
8442577 ACCTT-AAATCAATTTTAAGATTGTAA
312 A-CTTAAAATCAATTATGAGATTATAA
** ** ** * * * *
8442603 AACCATTTAAAATGAGTAATAAGGCTTTTGAAATCTTGAGTGACTATAAATGGACTTTTCCTATC
1 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTC
* * * *
8442668 AATGAAT-GCTTTTTTCTTCCA-G-TCCCCTAAGGTAAACATTCAATTATAATTTGTTTTAACTA
66 AATGAATAGCTTTTTT-TT--ATGTTTCTC-AAGGTAAACATTCAATTATAATCTATTTTAAC-A
* ** * * ********** *
8442730 AAAATGTAAAAGCATTTAACTTAAAATCAATTATGAGATTCTANNNNNNNNNNAAGCAAGTAATA
126 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * * *
8442795 AGGCCTTT-GAAGGTATGAGTGACTATAAATGGACCTTTTC-TATCAATGCATAGCATTTTCTTC
191 AGG-CTTTCGAAGGTATGGGTGACTATAAATGGA-CTTTTCTTGTCAATGAATGGCTTTTTCTTC
* * * * * ***
8442858 ACATTTTCAAAGGTAGACATTTAATGATAATCTATTTTAACAAAAAATACAAAAAAATTCAANNN
254 ACGTTTT-TAAGGCAGACATTCAAT-ATAATCTATTTTAACTAAAAATAC-AAAAAATTCAACTT
*******
8442923 NNNNNNNATTATGAGATTATAA
316 AAAATCAATTATGAGATTATAA
** * * * * * * * * *
8442945 AACCATTTAAAATGAATAATGAGGCTTTCAAAGACTTCG-GTGACTATTAATGGACTTTTCTT-A
1 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCAT-GAGTGACTATAAATAGACTTTTCTTGT
********* * ** * *
8443008 CNNNNNNNNNNCTTTTTCTTCATAT-TTTCT-GAGGTCGACATTCAATTATAATATGTTTTAACC
65 C-AATGAATAGCTTTTT-TT--TATGTTTCTCAAGGTAAACATTCAATTATAATCTATTTTAA-C
* * *
8443071 AAAAATATAAAAACAATT-GACTTAAGATCAATTAGGAGATTATAAAACCATTTAAAGCGAGTAA
125 AAAAATATAAAAA-AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAA
* *** * *
8443135 TAAGGCTTTCAAATCCATGGGTGACTATAAATGAACTTTTCTTATCAATGAATGGCTTTTTCTTC
189 TAAGGCTTTCGAAGGTATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTTC
* * * * * * ** *
8443200 ACATTTTCTATGGCAAACATTCAATTATAATATGTTTTAACTGAAAATGTAAAAGAATTCAACCT
254 ACGTTTT-TAAGGCAGACATTCAA-TATAATCTATTTTAACTAAAAATACAAAA-AATTCAACTT
* *
8443265 AAAATCAATTATTAGATTA-GA
316 AAAATCAATTATGAGATTATAA
* * *
8443286 AA-CATTTTGTAGGAGCGGGTTAAT-A-GATT-CGAAGGTCGATGGAAGCTGGCTGGCAACTGAT
1 AACCA--TT-TA-AAGCGAG-TAATAAGGCTTCCGAAGG-C-AT-G-A----G-T-G--ACT-AT
* ** * * * *
8443347 AAATGGACTTTTCTTCCCAATGCATAGCTTTTTTTTCATGTTTCTTGAA-ATAAACATTCAGTTA
48 AAATAGACTTTTCTTGTCAATGAATAGCTTTTTTTT-ATGTTTC-TCAAGGTAAACATTCAATTA
* * * * * * *
8443411 TAATCTGTTTTAATCAAAAATGT-AAAAACTTCAACTCAAAATCAATTATGAGGTTTTAAAGCCA
111 TAATCTATTTTAA-CAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCA
* * * * * * *
8443475 TCTAAAGTGATTAAAAAGGCTTTCGAAGGCT-TGGGTAACTATAAATGAACTTTT-TGTGCCAAT
175 TTTAAAGCGAGTAATAAGGCTTTCGAAGG-TATGGGTGACTATAAATGGACTTTTCT-TGTCAAT
* * ** * **
8443538 -AGATGGCTTTTGT-TACATGTTTTCTAAAACAGACATTTAATTATAAAATA-TTTAA-TCAAAA
238 GA-ATGGCTTTT-TCTTCACGTTTT-TAAGGCAGACATTCAA-TATAATCTATTTTAACT-AAAA
** * * *
8443599 ATGTAAAACAATTTAACTTAAAATGAATTTTGAGATTATAA
298 ATACAAAA-AATTCAACTTAAAATCAATTATGAGATTATAA
* * * * * * * *
8443640 AATCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCTTG-GTTGACTATATATGGACTTTTATTGT
1 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAG-TGACTATAAATAGACTTTTCTTGT
* * * * * *
8443704 TAGTGAATGGCTTTTTCCTCATGTTTCTCAAGGTAGACATTCAATTATAATC-AGTTTTAACAAA
65 CAATGAATAGCTTTTT-TTTATGTTTCTCAAGGTAAACATTCAATTATAATCTA-TTTTAAC-AA
* * * * *
8443768 AAATATAACAAAATTCAACTTAAAATTAACTATAAGATTATAAAACCATTTAAAGCAAGTAATAA
127 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAA
* * ** * ** *
8443833 GGCTTTCGACGGCATGGGTGACTATAAATAAACTTTTCTTGTCAAGGAATGATTTTTTCTTCATG
192 GGCTTTCGAAGGTATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTTCACG
* * * * * *
8443898 TTTCCTGAGGCAGATAATCAATTATAATCTATTTTAACCAAAAATATAAAAAAATTCAA-TCTAA
257 TTT-TTAAGGCAGACATTCAA-TATAATCTATTTTAACTAAAAATA-CAAAAAATTCAACT-TAA
* *
8443962 AATTAACTATGAGATTATAA
318 AATCAATTATGAGATTATAA
* * * * *
8443982 AACCATTGAAAGCAAGTAATAAGACCTT-CGAAGGCATGGGCT-ACTATAAATGGACTTTTCTTG
1 AACCATTTAAAGCGAGTAATAAG-GCTTCCGAAGGCATGAG-TGACTATAAATAGACTTTTCTTG
* * * * * **
8444045 CCAATGCATAGCTTTTTCTTTATGTTTC-CTAAGGCAGATATTCAA-TATAATCCGTTTTAACTA
64 TCAATGAATAGCTTTTT-TTTATGTTTCTC-AAGGTAAACATTCAATTATAATCTATTTTAAC-A
* * * ** * *
8444108 AAAATGTAAAAAAAATTCAACTTCAGATCAATTATGAGATTATAAAATTATTTGAAGTGAGTAAT
126 AAAATAT-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
*
8444173 AAGGCATTT-GAAGGCT-CGGGTGACTATAAATGGACTTTT-TTG-CTAATGAATGG-TTTTTCT
190 AAGGC-TTTCGAAGG-TATGGGTGACTATAAATGGACTTTTCTTGTC-AATGAATGGCTTTTTCT
** * * * * * * *
8444233 TCATATTTTTTGAGGCAAACATTTCATTATAATCTGTTTTAACTAAAACTATATAAGAATTCAAC
252 TCA-CGTTTTTAAGGCAGACA-TTCAATATAATCTATTTTAACTAAAAATACA-AAAAATTCAAC
* *
8444298 TTAAAATCATTTATGAGGTTATAA
314 TTAAAATCAATTATGAGATTATAA
* * * *
8444322 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGACAT-AGGTGACTATAAATGGACTTTTCTT-C
1 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGA-GTGACTATAAATAGACTTTTCTTGT
* * * * * * *
8444385 CTAATAAATGGCTTTTTCTTTACGTTTCTCTAA-GCAGACATTCTATTATATTCTATTTTAACTA
65 C-AATGAATAGCTTTTT-TTTATGTTTCTC-AAGGTAAACATTCAATTATAATCTATTTTAAC-A
* * *
8444449 AAACTGTAAAAATATTCAACTTAAAATCAATTATGAGA-T-T------A--TAAA---AG-----
126 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * ** * ** **
8444496 -GG-TTTCGAAGGCATGGGTGACTATAAATGGACTTTTTTTACTACTGAATGGCTTTTC-TTT--
191 AGGCTTTCGAAGGTATGGGTGACTATAAATGGAC----TTTTCTTGTCAAT-GAATGGCTTTTTC
* * * ** *
8444556 ---ATGTTTCTCAAGGCAAACATTCAATTATAATCTATTTTAACTAAAAATGTTAAACAATTCAA
251 TTCACGTTT-TTAAGGCAGACATTCAA-TATAATCTATTTTAACTAAAAAT-ACAAAAAATTCAA
* *
8444618 CTAAAAATCAATTATGGGATTATAA
313 CTTAAAATCAATTATGAGATTATAA
* * * * * * *
8444643 AGCCATTTAAAGCGAGTAATAAAGCCTT-CAAAGGTATGGGTGATTATAAATAAACTTTT-TGTG
1 AACCATTTAAAGCGAGTAAT-AAGGCTTCCGAAGGCATGAGTGACTATAAATAGACTTTTCT-TG
* * * ** * * * * *
8444706 CCAATGCATAG-TTTTTTCTT-TGCATATT-T-GAGACAGATAATCAGTTATAATCTGTTTTAAT
64 TCAATGAATAGCTTTTTT-TTATG--T-TTCTCAAGGTAAACATTCAATTATAATCTATTTTAA-
* * * * *
8444767 AAAAAATATAAAAAAATTGAATTTAAAATTAATTATGAGATTATAAAACCATTTAAAACGAGTAA
124 CAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAA
* * * * * * * ** * *
8444832 TAGGGATTTTGAAGGCAAGGGTGACTATAAGTAGACTTTTCTTACCAATGAATGACTTTTTTTTT
189 TAAGGCTTTCGAAGGTATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGC-TTTTTCTT
* * * * * * * * ** * *
8444897 CAAGTTTCTTGAGGTAAAGATTCAATTATAATATAGTTTAAC-CAAAATGTGAAAAAATTTAACC
253 CACGTTT-TTAAGGCAGACATTCAA-TATAATCTATTTTAACTAAAAAT-ACAAAAAATTCAACT
* *
8444961 TAAAATCAATTATAAGATTGTAA
315 TAAAATCAATTATGAGATTATAA
* * * *
8444984 AACTATTTAAAGTGAGTAATAAGGCTT-TGAAAGGCAT-AGGTGACAATAAAT-GAACTTTTCTT
1 AACCATTTAAAGCGAGTAATAAGGCTTCCG-AAGGCATGA-GTGACTATAAATAG-ACTTTTCTT
* * * * ** ** * * * * *
8445046 -TCTAATGCATGGCTTTTTCTTCACGTTT-TTGAGACAGACAATCAGTTATGATCTGTTTTAACC
63 GTC-AATGAATAGCTTTTT-TTTATGTTTCTCAAGGTAAACATTCAATTATAATCTATTTTAA-C
* * * * ** * *
8445109 CAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGTTTATAAAACTATCAAAAGTGAGTAAC
125 AAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * * * *
8445174 AAGGCTTTCGAAGGCT-TAGGTGACAATAAATGGACTTTTCGTGCCAAT-AGATGGCTTTTGCTT
190 AAGGCTTTCGAAGG-TATGGGTGACTATAAATGGACTTTTCTTGTCAATGA-ATGGCTTTTTCTT
* * * * * * *
8445237 CATGTTTCCTGAGACATG-CTTTCAATTATAATAT-TTTTAA-TCAAAAATGTA-AAAAAATTTA
253 CACGTTT-TTAAGGCA-GACATTCAA-TATAATCTATTTTAACT-AAAAA--TACAAAAAATTCA
** * * *
8445298 ACCGACAATCAATTTTTAGATTATAA
312 ACTTAAAATCAATTATGAGATTATAA
* * * * * * *
8445324 AACTATTTAAAGTGAGTAATAAGGCTTTCGAGGGCTTCG-GTGACTATAAATGGACTTTTTTTGT
1 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCAT-GAGTGACTATAAATAGACTTTTCTTGT
* * * * * * * * *
8445388 CAATGAGTAGCTTTTTCTTCATGTTTCTCGATGTAGACAATCCATTATAATATGTTTTAACCAAA
65 CAATGAATAGCTTTTT-TTTATGTTTCTCAAGGTAAACATTCAATTATAATCTATTTTAA-CAAA
* * * * * *
8445453 AATATAAAAGAATTCTACTTAAAATCAACTATGAGATCATAAAATCATTTAAAGCAAGTAATAAG
128 AATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAG
* ** * * * * * **
8445518 GCTTTTGAAGGCGTGAGTGACTATGAATGAAC-TTTCTTGCCAATGAATAGCTTTTTCTTCATAT
193 GCTTTCGAAGGTATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTTCA-CG
* * * * * * *
8445582 TTTTTAAGGTAAATATTCAATTATAATATGTTTTAA-TCAAAAATATAAAAAATTCAACCTAAAA
257 TTTTTAAGGCAGACATTCAA-TATAATCTATTTTAACT-AAAAATACAAAAAATTCAACTTAAAA
8445646 TCAATTATGAGATTATAA
320 TCAATTATGAGATTATAA
* * * * * * **
8445664 AACCATTGAAAGTGAATAATAAGGCATT-CGAAGGTATGAGTGACTATATATAGACTTTTTTTAC
1 AACCATTTAAAGCGAGTAATAAGGC-TTCCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGT
* * * ** * ** * *
8445728 CAATGCATGGCGTTTTCTTCCTGTTTCCCAAGACAAACATTCAATTATAATCT-GTTTAACTGAA
65 CAATGAATAGC-TTTTTTTTATGTTTCTCAAGGTAAACATTCAATTATAATCTATTTTAAC-AAA
* * * *
8445792 AATATAAATAAATTCAACTAAAAATCAATTATGAGATTATAAAGCCATTTAAAGCGAATAATAAG
128 AATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAG
* * * * * * * * *
8445857 GCCTTCAAAGGCATGGGTAACTATAAATGGACTTTTCTCGCCAATGCA-GGACTTTTTCTTTATG
193 GCTTTCGAAGGTATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGG-CTTTTTCTTCACG
*** ** * * * **
8445921 TTTCCCCAGATAGATAATT-AATCATAATCTGTTTTAATTAAAAATGTAAACAAATTCAACTTAA
257 TTT-TTAAGGCAGA-CATTCAAT-ATAATCTATTTTAACTAAAAATACAAA-AAATTCAACTTAA
*
8445985 AATCAATTATGACATTATAA
318 AATCAATTATGAGATTATAA
* * ** * * *
8446005 AACCATCTAAAGCGAGTAACAAGGCTTTTGAAGGC-TTATGTGACTACAAATGGA-TTTT-TTGT
1 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGA-GTGACTATAAATAGACTTTTCTTGT
* * * * ** ** * * * * * *
8446067 GCCAATGGATGGCTTTTGGTTCACATTTCTCAAGACAGACATTCAATTCTGATATATTTTAGCCA
65 --CAATGAATAGCTTTT-TTTTATGTTTCTCAAGGTAAACATTCAATTATAATCTATTTTAACAA
* * * * ** *
8446132 AAATATAAAAAAATTCAACTTAAAATCAATTTTTAGAGTACAAAACCATTTAAAGTAAGAAATAA
127 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAA
* * * * ** * * ** *
8446197 GGCTTTTGAAGGAATAGGTAACTATAAACAGACTTTTCTAGCCAACAAATGTC-TTTTCTTCACG
192 GGCTTTCGAAGGTATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTTCACG
* * * * ** * ** *
8446261 TTTCTCATGGTAAACATTCAATTATTGTCT-GTTTAACTAAAAATGTAAAAATATTTAACTTAAA
257 TTT-TTAAGGCAGACATTCAA-TATAATCTATTTTAACTAAAAATACAAAAA-ATTCAACTTAAA
8446325 ATCAATTATGAGATTATAA
319 ATCAATTATGAGATTATAA
* * * * * * *
8446344 AACCATTTTAAGTGAGTAACAAGGCTTTCGAAGGCTTGAGTGACTATAAATGGACTTTTCTTGCC
1 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTC
* * * * *
8446409 AATGAACTA-CTTTTTCTTCATG-TTCTCTAAGATAGACATTCAATTATAATCTGTTTCAACCAA
66 AATGAA-TAGCTTTTT-TTTATGTTTCTC-AAGGTAAACATTCAATTATAATCTATTTTAA-CAA
* * * *
8446472 AAATGTAAAAAAATTCAACTAAAAATCAATTATGTGATTAT-AAACCATTTAAAGCAAGTAATAA
127 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAA
* ** ** * * * *
8446536 GGCTTCCGAAGAAATGGACGACTATAAATGGGCTTTGCTTGCCAATGAATGGCTCTTTCTTCACG
192 GGCTTTCGAAGGTATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTTCACG
* * * * *
8446601 TTTCCTAAGAC-GAATATTCAATCATAATCTATTTTAACCAAAAATATAAAAACATTCAACTTAA
257 TTT-TTAAGGCAG-ACATTCAAT-ATAATCTATTTTAACTAAAAATACAAAAA-ATTCAACTTAA
*
8446665 AATCAATGATGAGATTATAA
318 AATCAATTATGAGATTATAA
* * * * * **
8446685 AACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGTGTGACTATAAATGGGCTTTTCTTACC
1 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTC
* * * * * * *
8446750 AATGAATGGCTTTTTCTTCACAT-TTTCT-AAGGCAGACATTCAATTATAGTCTGTTTTAGCTAA
66 AATGAATAGCTTTTT-TT--TATGTTTCTCAAGGTAAACATTCAATTATAATCTATTTTAAC-AA
* * **
8446813 AAATATAAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGTAAGTAATA
127 AAATAT-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * * * *
8446878 AGGCTTTCGAAGGAATGAGTGACTATAAATGGGCTTTGCTTGCCAATGAATGGTTTTTTCTTCAC
191 AGGCTTTCGAAGGTATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTTCAC
* * ** * *
8446943 GTTTCCTAAGG-TGAACATTCAATCATAATCTATTTTAACTAAAAATGTAAAAAATTCAGCCTAA
256 GTTT-TTAAGGCAG-ACATTCAAT-ATAATCTATTTTAACTAAAAATACAAAAAATTCAACTTAA
8447007 AATCAATTATGAGATTATAA
318 AATCAATTATGAGATTATAA
* ** * * * *
8447027 AACTATTTAAAGCGAGTAATAAGGCTTTTGATGGAATGCGTGACTATAAATAGACCTTTCTTG-C
1 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTC
* * * * ** * * *
8447091 TAATGACT-GCCATTTTCTTCATCTTTCTTGAGGTAGACATTCAATTACAATCTATTTGAACCAA
66 -AATGAATAG-C-TTTTTTTTATGTTTCTCAAGGTAAACATTCAATTATAATCTATTTTAA-CAA
* * * * * * *
8447155 AATTGTAAAAAAATTCAATTTCACATCAATTATGAGATTATAAAACCATTTAAACCGAGTAATAG
127 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAA
* * * ** * ***
8447220 GGCTTTCGAAGGCACGGTCGGTGACTATAAATGGATTTTTCTAATCAATGCATTATTTTTTCTT-
192 GGCTTTCGAAGGTA---TGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTTC
* ** * * * **
8447284 -TGTTTTCCCT-AGATAAATAATCAATTATAATC-AGTTTTAACTAAAAATGTAAAAAATTCAAC
254 ACGTTTT---TAAGGCAGACATTCAA-TATAATCTA-TTTTAACTAAAAATACAAAAAATTCAAC
* *
8447346 TTCAAATAAATTATGAGATTATAA
314 TTAAAATCAATTATGAGATTATAA
* * * * ** *** ** *
8447370 AACGATCTAAAGCTAGTAACAAAACTTTTAAAGGTTTGAGTGACGATAAATAGA-TTTT-TTGTA
1 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGT-
* * * * * *
8447433 CCAATGGATAGCTTTTGCTTCATATTTCTC-AGG-ACAGACATTCAATTATAATATATTTTGATC
65 -CAATGAATAGCTTTT-TTTTATGTTTCTCAAGGTA-A-ACATTCAATTATAATCTATTTT-AAC
* * * * * * * *
8447496 AAAAATATAAACAATTTTAATTTAAAACCAATTATGATATTATAAAGCCATTTAAAGTGAGTAAT
125 AAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* ** * * * * *
8447561 AAGAC-TT-GAAAGACATGGGTGGCTATAAATGGACCTTACTTGCCAATGAATGTCTTTTTCTTC
190 AAGGCTTTCG-AAGGTATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTTC
** * * * * ** * * *
8447624 TTGTTTCTTGAGGTAGACATTCAGTTATAATCTGTTTTAACTAAAAATGTATAAAACTTCTACCT
254 ACGTTT-TTAAGGCAGACATTCA-ATATAATCTATTTTAACTAAAAATACA-AAAAATTCAACTT
8447689 AAAATCAATTATGAGATTATAA
316 AAAATCAATTATGAGATTATAA
* * * * * * * * *
8447711 AACGATTTAAAGTGAGTAATAATGCTTTCAAAGGCATAAGTGACTATAAATGGACTTTTCGTGCC
1 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTC
* * * * ** ** * * * * *
8447776 AATGGATGGCTTTTGCTTCATGTTTCTTGAGACAGACATTCAATTGTTATATATTTTAATAAAAA
66 AATGAATAGCTTTT-TTTTATGTTTCTCAAGGTAAACATTCAATTATAATCTATTTTAA-CAAAA
** * * * *
8447841 ATATAAGGAAATTCAACTTAAAATCAATTATAAGATTATAAAACTATTTAAAGTGAGTAATAATG
129 ATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGG
* *** * * * ** * * * * * *
8447906 CTTTTGAATACATGAGTGATTGTAAATAAACTTTTCTCT-ACAATGGATGTCTTTTCCTTCATGC
194 CTTTCGAAGGTATGGGTGACTATAAATGGACTTTTCT-TGTCAATGAATGGCTTTTTCTTCACGT
* * * * * * * *
8447970 TTTTGAGACAGACATTCAATTTTTATATATTTTGACTAAAAATATAAAAAAATTTAACTTAAAAT
258 TTTTAAGGCAGACATTCAA-TATAATCTATTTTAACTAAAAATA-CAAAAAATTCAACTTAAAAT
8448035 CAATTATGAGATTATAA
321 CAATTATGAGATTATAA
** * ** * * * * * * * *
8448052 AACCATTTAAAGTAATTAGCAAAGCTTTCGAAGGCTTGAAT-AGCTACAAATGGACTTTTCGTAT
1 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGTGA-CTATAAATAGACTTTTCTTGT
* ** * ** * ** * * * * * *
8448116 CAAT-AGATGGCTTTTGCCTCACATTTGTTGAGATAGATATTCAATTATTATATATTTTAATTAA
65 CAATGA-ATAGCTTTT-TTTTATGTTTCTCAAGGTAAACATTCAATTATAATCTATTTTAA-CAA
* * * *
8448180 AAATATAAAAAAATT-TATTTGAAAATTAATTATGAGATTGTAAAACCATTTAAAGCGAGTAATA
127 AAATATAAAAAAATTCAACTT-AAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * * * ** * *
8448244 GGGATTTTGAAAGCATAAGTGACTATAAATGGACTTTTCTTATCAATGAATGGCTATTTTTTTTC
191 AGGCTTTCGAAGGTATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGC--TTTTTCTTC
* * * * ** *
8448309 ATGTTTCTTAA-GCTAAACATTCAATTATAATATGTTTT-AC-ACAAAATTTAAAAAATTCAACC
254 ACGTTT-TTAAGGC-AGACATTCAA-TATAATCTATTTTAACTA-AAAATACAAAAAATTCAACT
*
8448371 GAAAATCAATTATGAGATTATAA
315 TAAAATCAATTATGAGATTATAA
** ** * * *
8448394 AACCATTTAAAATGAGTAATAAGGCCTT-AAAATGCATGGGTGACTATAAATGGACTTTTCTTG-
1 AACCATTTAAAGCGAGTAATAAGG-CTTCCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGT
** * * * * *
8448457 CTAATCCATGGCTTTTTCTCTATGTTTCT-AAGATAGACAATT-AATTATAATCTGTTTTAACTA
65 C-AATGAATAGCTTTTT-TTTATGTTTCTCAAGGTAAAC-ATTCAATTATAATCTATTTTAAC-A
** * * * * * * *
8448520 AAAATGCAAAAAAATTTAACTCAAAATTAATTATGAGGTTATAAAACCATCTAAAGCGACTAACA
126 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * ** * * *
8448585 AAGATTTAGAAGGCT-T--G-G--------T-GACTTTTCAAGCCAATAAATGGCTTTTTTTTCA
191 AGGCTTTCGAAGG-TATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTTCA
* * * * * * * * *
8448637 TGTTTCCTGAGACAGACTTTTAATTATAGTATACTTTAA-TAAAAAAGGTA-AAACAAATT-AAC
255 CGTTT-TTAAGGCAGACATTCAA-TATAATCTATTTTAACT-AAAAA--TACAAA-AAATTCAAC
* *
8448699 CTAAAATCAATTTTGAGATTATAA
314 TTAAAATCAATTATGAGATTATAA
* * * * * *
8448723 AACCATTTAAAGTGAGTAAAAAGGCTTTCGAAGGCTTGGGTGACTACAAAT-GAACTTTT-TT-T
1 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGTGACTATAAATAG-ACTTTTCTTGT
* * * ** * * *
8448785 ACTAATGAGTAGCTTTTTCTTCATGTTTGC-CAGGGTAAACATTCAAGCACAATCTGTTTTAAAT
65 -C-AATGAATAGCTTTTT-TTTATGTTT-CTCAAGGTAAACATTCAATTATAATCTATTTT-AAC
* * * *
8448849 AAAAATATAAAAAAATTCAACTTAAAATCAATTATGAAATTATAAAATCATTTAAAGCTAGGAAT
125 AAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * * * * *
8448914 AAGGCTTTCAAAGGCATGGGTGACTATAAATGAAC-TTTCCTGCCAATGAAT-GCTTTTGCTTCA
190 AAGGCTTTCGAAGGTATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTTCA
* * * * * * * ** * *
8448977 TGTTTTCTTAGTCAAACATTCAATTATAATATGTTTTAATTAAAAATGTAAAGCAATTCAACCTA
255 CGTTTT-TAAGGCAGACATTCAA-TATAATCTATTTTAACTAAAAATACAAA-AAATTCAACTTA
8449042 AAATCAATTATGAGATTATAA
317 AAATCAATTATGAGATTATAA
* * * * * * **
8449063 AACCTTTTAAAGCAAGTAATAAGGCCTT-CAAAGGCATGGGTGGCTATAAATGGACTTTTCTTAC
1 AACCATTTAAAGCGAGTAATAAGG-CTTCCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGT
* * * * * * * **
8449127 CAATGCATGGCTTTTTCTTCATGTTTC-CTGAGGCAGACATTTAATTATAATCCGTTTTAATCAA
65 CAATGAATAGCTTTTT-TTTATGTTTCTC-AAGGTAAACATTCAATTATAATCTATTTTAA-CAA
* * * * * *
8449191 AATTGTAAAAACATTCAACTTAAAATGAATTATGAGATTATAAAACTATTTGAAA-CGAGTAACA
127 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTT-AAAGCGAGTAATA
* * * *
8449255 AGGCTTTCG--GCT-TGGGTGACTATAAATCGACTTTTCTTTTGT-AATGAAT-GATTTTGCTTC
191 AGGCTTTCGAAGGTATGGGTGACTATAAATGGACTTTTC--TTGTCAATGAATGGCTTTTTCTTC
* * * * * * * * * *
8449315 ATGTTTCGTGAGGCAAACATTCCATTATAATCTGTTTTAACCAAAACTGTGC-AAGAATTCAACT
254 ACGTTT-TTAAGGCAGACATT-CAATATAATCTATTTTAACTAAAA--ATACAAAAAATTCAACT
*
8449379 TAAAATCAATTGTGAGATTATAA
315 TAAAATCAATTATGAGATTATAA
* * *
8449402 AACCATTTAAAGCAAGTAATAAGGCTTTCAAAGGTACA-GA-TGACTATAAA-AGAACTTTTCTT
1 AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGG--CATGAGTGACTATAAATAG-ACTTTTCTT
* * * * * * * **
8449464 GTAAATAAATGGCTTATTCTTCATGTTTCTCAAGGTAGACATTCAATTATATTCTGCTTTAACCA
63 GTCAATGAATAGCTT-TTTTTTATGTTTCTCAAGGTAAACATTCAATTATAATCTATTTTAA-CA
* * * * * *
8449529 AAACTATAAAATAATTTAACTTAAAATCAATTATGAGATTATAAAATCATTTAAAACGAATAATA
126 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * ** *
8449594 AGGGTTTCGAAGGCATATGTGACTATAAATAGACTTTTCTTGTCAATGAATGGCTTTTT-TTCAT
191 AGGCTTTCGAAGGTATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTTC--
* * * * * * * *
8449658 AC-TTCTTGAGG-TGAACATTCAATTATAATCTATTTTAACTAAAAATATTAAAACATTTATCTA
254 ACGTTTTTAAGGCAG-ACATTCAA-TATAATCTATTTTAACTAAAAATA-CAAAAAATTCAACTT
*
8449721 AAAATCAATTATCAGATTATAA
316 AAAATCAATTATGAGATTATAA
* * * *
8449743 AACCATTTAAAGCGAGTAATAAGGCCTT--GAAAGGCATGGGTAACTATAAATGGACTTTT-TCG
1 AACCATTTAAAGCGAGTAATAAGG-CTTCCG-AAGGCATGAGTGACTATAAATAGACTTTTCTTG
* ** ** * *
8449805 -CTAATGCAT-GTCTTTTTCTCGATGTTT-TTGAGATGAACAATT-AATTATAATCTATTTTAAC
64 TC-AATGAATAG-CTTTTT-TTTATGTTTCTCAAGGTAAAC-ATTCAATTATAATCTATTTTAAC
* *
8449866 TAAAAATATAAAAACATTTAACTTAAAATCAATTA
125 -AAAAATATAAAAAAATTCAACTTAAAATCAATTA
8449901 NNNNNNNNNN
Statistics
Matches: 10445, Mismatches: 2722, Indels: 1337
0.72 0.19 0.09
Matches are distributed among these distances:
319 6 0.00
320 92 0.01
321 116 0.01
322 13 0.00
324 3 0.00
325 4 0.00
326 5 0.00
327 38 0.00
328 13 0.00
329 117 0.01
330 97 0.01
331 2 0.00
332 2 0.00
333 3 0.00
335 3 0.00
336 8 0.00
337 29 0.00
338 84 0.01
339 1019 0.10
340 2277 0.22
341 2890 0.28
342 2218 0.21
343 726 0.07
344 97 0.01
345 6 0.00
346 6 0.00
347 14 0.00
348 7 0.00
349 11 0.00
350 7 0.00
351 8 0.00
352 17 0.00
353 59 0.01
354 129 0.01
355 62 0.01
356 8 0.00
357 16 0.00
358 18 0.00
359 11 0.00
360 1 0.00
361 10 0.00
362 5 0.00
363 8 0.00
364 11 0.00
365 5 0.00
366 5 0.00
367 5 0.00
368 9 0.00
369 3 0.00
370 10 0.00
371 3 0.00
372 11 0.00
373 5 0.00
374 2 0.00
375 5 0.00
376 2 0.00
377 5 0.00
378 5 0.00
379 10 0.00
380 8 0.00
381 3 0.00
382 9 0.00
383 8 0.00
384 5 0.00
385 5 0.00
386 1 0.00
387 6 0.00
388 9 0.00
391 11 0.00
392 8 0.00
393 5 0.00
394 5 0.00
395 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.35
Consensus pattern (337 bp):
AACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTC
AATGAATAGCTTTTTTTTATGTTTCTCAAGGTAAACATTCAATTATAATCTATTTTAACAAAAAT
ATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT
TTCGAAGGTATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTTCACGTTTT
TAAGGCAGACATTCAATATAATCTATTTTAACTAAAAATACAAAAAATTCAACTTAAAATCAATT
ATGAGATTATAA
Found at i:8440168 original size:341 final size:339
Alignment explanation
Indices: 8438155--8449900 Score: 6700
Period size: 341 Copynumber: 34.5 Consensus size: 339
8438145 NNNNNNCAAC
* * * *
8438155 TATGAGATTATAAAACCATTTAAAGCA-AGTAATAAGGCTTTTCAAAGATA-AAGGTGACTACAA
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGC-TTTCGAAGGTATGA-GTGACTATAA
* * * * * * * * *
8438218 ATGAACTTTTCTTAG-CAATGAATGGCTTTTTCTTCATGTTCCCTGAGACAAACTTTCAATCAGA
64 ATGGACTTTTCTT-GCCAATGCATGGCTTTTTCTTCATGTT-TCTAAGGCAGACATTCAATTATA
* * * * *
8438282 ATCTGTTTTAACCAAAAATGTAAAAAAATATAACCT-AAATCCATTAAGAGATTATCAAACCATT
127 ATCTGTTTTAACCAAAAATATAAAAAAAT-CAACTTAAAATCAATTATGAGATTAT-AAACCATT
* * * * * * * * *
8438346 TAAAGCGAGTAA-CAGGCCTTTCGAAGACTTGAGTGACTGTAAATGGACTTCTT-GTGCCATTGG
190 TAAAGCAAGTAATAAGG-CTTTCGAAGGCATGGGTGACTATAAATGGACTT-TTCTTGCCAATGA
* * * * * * * **
8438409 ATGGCTTTTGCTTCACGTTTTTTG-AG-ACAGATATTCAATTATAATATATATTAGTTAAAAATA
253 ATGGCTTTTTCTTCATGTTTCTTGAAGTA-A-ACATTCAATTATAATCTGTTTTAACTAAAAATA
* * *********
8438472 TAAAAAAATTAAACTNNNNNNNNNN
316 TAAAAAATTTAACCT-AAAATCAAT
** * * * *
8438497 TATGAGATTATAAAACCATTT-AAGTTGAGTAATAATGCTTTTGAAAGCATGAGTGACTATAAAT
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCGAAGGTATGAGTGACTATAAAT
** * * * * ** * *
8438561 AAACTTTTCTCT-CCAACGGATGTCTTTTGCTTCATGTTTTCTAAGATAGACATTCAATTTTTAT
66 GGACTTTTCT-TGCCAATGCATGGCTTTTTCTTCATG-TTTCTAAGGCAGACATTCAATTATAAT
* * * **************
8438625 ATATTTTAACAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGANNNNNNNNNNNNNNN
129 CTGTTTTAACCAAAAATATAAAAAAA-TCAACTTAAAATCAATTATGAGA-TTATAAACCATTTA
******** ** * * * * * *
8438690 NNNNNNNNAACGATGCTTTCGAAGGCTTGAGTAACTATAAATGGACTTTTCGTGCCAATGGATGG
192 AAGCAAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGG
* ** ** * * * * * *
8438755 CTTTTGCTTCACATTTCCCGAGGCAAACATTTAATTATAATATGTTTTTA-TCAAAAATGTAAAA
257 CTTTTTCTTCATGTTTCTTGAAGTAAACATTCAATTATAATCTGTTTTAACT-AAAAATATAAAA
* *
8438819 ATATTCAACCTAAACTCAAT
321 A-ATTTAACCTAAAATCAAT
* * * *
8438839 TATGAGATTATAAAACAATTTAAAGC-GGGTAAGAA-G-TTCGTCAAAGGTATGAGTGACTATAA
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTT--TCGAAGGTATGAGTGACTATAA
* * * ** * * *
8438901 ATAGATTTTTCATATCAATGCATAGCTTTTTCCTCATGTTTTTCAAGGCAGACATTCAATTATAA
64 ATGGACTTTTCTTGCCAATGCATGGCTTTTTCTTCATGTTTCT-AAGGCAGACATTCAATTATAA
* * * *
8438966 TCTATTTTGACTAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATACAACCATTT
128 TCTGTTTTAACCAAAAATATAAAAAAA-TCAACTTAAAATCAATTATGAGATTATA-AACCATTT
* ** * * * *** *
8439031 GAAGTGAGTGATAAGGCTTTTGAAGGCGTGGGTGACTATAAACAAACTTTTCTTGTCAATGAATG
191 AAAGCAAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATG
* * * * * *
8439096 GCTATTTCTTCACGTTTC--CAAGGCAAACATTCAATTATAATATGTTTTAACCAAAAATATAAA
256 GCTTTTTCTTCATGTTTCTTGAA-GTAAACATTCAATTATAATCTGTTTTAACTAAAAATATAAA
* ********
8439159 AACGTTTAACCTANNNNNNNN
320 AA-ATTTAACCTAAAATCAAT
** * * * * *
8439180 NNTGAGATTATAAAACTATTTAAAG-TGGGTAATAAGACCTTCGAAGGTATGAGTGACTATAAAT
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCGAAGGTATGAGTGACTATAAAT
* * * * *
8439244 GGACTTTTCTTACAAATGCAT-GATGTGTTCTTTATGTTTCCTAAGGCAGACATTCAATTATAAT
66 GGACTTTTCTTGCCAATGCATGGCT-TTTTCTTCATGTTT-CTAAGGCAGACATTCAATTATAAT
* * * * ********** * *
8439308 TTGTTTTAACCAATAATGTAAAAAAATTTAACTTAAAANNNNNNNNNNGATAATAAAACTATTTA
129 CTGTTTTAACCAAAAATATAAAAAAA-TCAACTTAAAATCAATTATGAGATTAT-AAACCATTTA
* * * * * *
8439373 AAGCGAA-TAGTGAGGCTTTCGAAGTCATGTGTGACAATAAATGAACTTTTCTTGCCAATGAATG
192 AAGC-AAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATG
* * * * *
8439437 ACTTTTTCTTCACGTTTCCT-AAGACAAACATTCAATTATAATTTGTTTTAACTAAAAATATAAA
256 GCTTTTTCTTCATGTTTCTTGAAG-TAAACATTCAATTATAATCTGTTTTAACTAAAAATAT-AA
* *
8439501 AAAACTTAACCTAAAAACCAAT
319 AAAATTTAACCT-AAAATCAAT
* * * * * * * * *
8439523 TATGAGATTATAAAATCATTGAAAG-TGAGTAATAAGGCCTTCGAAAGCATGGGCGATTATAAAT
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCGAAGGTATGAGTGACTATAAAT
* * * * * * * *
8439587 GGATTTTTCTTACCAATGTATGACTTTTTCTTCAGGTTTCTCGAGTCAGACATTCAATTTTAATC
66 GGACTTTTCTTGCCAATGCATGGCTTTTTCTTCATGTTTCT-AAGGCAGACATTCAATTATAATC
* * * * * *
8439652 CG-TTTAACCAAAAATGTAAAAAATTTCAACTTAAAATCAATTCTGAGATTATAAAACTATTTTA
130 TGTTTTAACCAAAAATATAAAAAA-ATCAACTTAAAATCAATTATGAGATTAT-AAACCATTTAA
* ** * * * * ** *
8439716 AGTAAGCGATAAAGCTTTTGGAGGCATGGATGACTATAAACAGACTTTTCTTGTCAATGAATGGC
193 AGCAAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGGC
* * * * * * *
8439781 TATTTCTTGACGTTTTTTGAAGCAACCATTCAATTATAA-CTGTTTTAACAAAAAATATAAAAAT
258 TTTTTCTTCATGTTTCTTGAAGTAAACATTCAATTATAATCTGTTTTAACTAAAAATATAAAAA-
*
8439845 GTTTAACCT-AAATCAAT
322 ATTTAACCTAAAATCAAT
*
8439862 TATGAGATTATAAAACCATTTCAAGCAG-GTAATAAGGCTTTCGAAGGTATGAGTGACTATAAAT
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCGAAGGTATGAGTGACTATAAAT
* * * *
8439926 GGACTTTTCTTGCAAATGCATGATG-TTTTTCTTTATTTTTCCTAAGGCAGACATTCAATTGTAA
66 GGACTTTTCTTGCCAATGCATG--GCTTTTTCTTCATGTTT-CTAAGGCAGACATTCAATTATAA
* * * * * * * * *
8439990 TATGTTTTAACCGATAATACAAAAAAATCAAGTTAAAATCACTTATGATATTATATAAGCATTTG
128 TCTGTTTTAACCAAAAATATAAAAAAATCAACTTAAAATCAATTATGAGATTATA-AACCATTTA
* * * * *
8440055 AAGTAAGTAATAAAGCTTTCGAAGGCATGGGTGACTATAAACGGACTTTTCTTACTAATGAATGG
192 AAGCAAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGG
* * * * *
8440120 CTATTTCTTCATATTTCTTGAAGTAGAGATTCAATTATAATTTGTTTTAACTAAAAATATAAAAA
257 CTTTTTCTTCATGTTTCTTGAAGTAAACATTCAATTATAATCTGTTTTAACTAAAAATATAAAAA
*********
8440185 NNNNNNNNNNAAAATCAAT
322 -ATTTAACCTAAAATCAAT
* * * * *
8440204 TATGAGATTAT-AAACCTATTTACAGC-GAGTAATAATGCTTTCGAAGGGT-TAAGTAACGATAA
1 TATGAGATTATAAAACC-ATTTAAAGCAGAGTAATAAGGCTTTCGAA-GGTATGAGTGACTATAA
* * * * * * * ** * * * *
8440266 ATGAACTTTT-GTGCCAAGGGATGACTTTTGCTTTACATTTCTTGAGGTAAATATTCAATTATAA
64 ATGGACTTTTCTTGCCAATGCATGGCTTTTTCTTCATGTTTC-TAAGGCAGACATTCAATTATAA
* * * ** *********** *
8440330 TATATTCTAATTAAAANNNNNNNNNNCTTTAACTTAAAATCAATTATGAGATTATAAAGCCATTT
128 TCTGTTTTAACCAAAA-ATATAAAAAAATCAACTTAAAATCAATTATGAGATTATAAA-CCATTT
** ** * *
8440395 AAAGCGAA-TAATAAGATTTTAAAAGGCTTGGGTGACTATAAATGGACTTTTCTTACCAATGAAT
191 AAAGC-AAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGAAT
** * * * * * *
8440459 GGCTTTTTCTTTCACATTT-TTAAAGGCAGACATTCAATTATAATCTATTTTAACTGAAAATGTA
255 GGCTTTTTC-TTCATGTTTCTTGAA-GTAAACATTCAATTATAATCTGTTTTAACTAAAAATAT-
* * *
8440523 AAAAAAATTAACTTATAATCAAT
317 AAAAAATTTAACCTAAAATCAAT
* * ** * * * **
8440546 TATGAGGTTATAGAATTATTTAAAGC-GAGTAACAATGCTTTCAAAGGTATGAGTGACTGCAAAT
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCGAAGGTATGAGTGACTATAAAT
* * * * *
8440610 GGACTTTTCTCT-CTAATGAATGGCTTTTACTTTATGTTTTTCAAGGCAGACATTCAATTATAAT
66 GGACTTTTCT-TGCCAATGCATGGCTTTTTCTTCATGTTTCT-AAGGCAGACATTCAATTATAAT
* * * * * *********
8440674 ATATTTTAACAAAAAATATAAAAAAGTTCAACTTAAAATTAATTATGAGATTANNNNNNNNNNTA
129 CTGTTTTAACCAAAAATATAAAAAA-ATCAACTTAAAATCAATTATGAGATTA-TAAACCATTTA
** * * * * *
8440739 AAGTGAGTAATAAGGCTTTTGAAGGCATGGATGGCTATAAATGGACTTTTCTTGCCAATGCATAG
192 AAGCAAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGG
* *
8440804 CTTTTTCTTCATGTTT-TCTG-A-TAAATAATCAATTATAATCTGTTTTAA-TAAAAA-ATANNN
257 CTTTTTCTTCATGTTTCT-TGAAGTAAACATTCAATTATAATCTGTTTTAACTAAAAATATA---
******* *
8440864 NNNNNNNTAACTTAAAATCAAT
318 AAAAATTTAACCTAAAATCAAT
* * * * * * * * *
8440886 TATGAGATTATAAACCCGTCTAAAG-TGAGTAACAAGACTTTCGAGGGCT-TGAGTGATTACAAA
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCGAAGG-TATGAGTGACTATAAA
* * * ** * *
8440949 TGAACTTTTCGTGCCAATTG-ATGGCTTTTGCTTCACATTTCTCAAGACAGACAATCAATTATAA
65 TGGACTTTTCTTGCCAA-TGCATGGCTTTTTCTTCATGTTTCT-AAGGCAGACATTCAATTATAA
* * * * * * * *
8441013 TATATTTTAATCAAAAATATAAAAAAATTTAAATTAAAATTAATTATGAGATAATAAAGTCATTT
128 TCTGTTTTAACCAAAAATATAAAAAAA-TCAACTTAAAATCAATTATGAGATTATAAA-CCATTT
* ** * *
8441078 AAAGCAAGTAATAAGGCTTTTGAAAACAT-GGT-AGCTATAAGTGGACTTTTCTTACCAATGAAT
191 AAAGCAAGTAATAAGGCTTTCGAAGGCATGGGTGA-CTATAAATGGACTTTTCTTGCCAATGAAT
* * * ** *
8441141 GACTTTTTCTTCATGTTTCTCGAGGTAGGCATTCAATTATAATCTGTTTTAACTAAAAATTTAAA
255 GGCTTTTTCTTCATGTTTCTTGAAGTAAACATTCAATTATAATCTGTTTTAACTAAAAATATAAA
*
8441206 ACTATTTAACCTAAAATCAAT
320 A-AATTTAACCTAAAATCAAT
********** ** * *
8441227 TATGNNNNNNNNNNACCATTTAAAGC-GAGTAATAAGTTTTTCAAAAGTATGAGTGACTATAAAT
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCGAAGGTATGAGTGACTATAAAT
* * * ** * * ** * * *
8441291 GGACTTTTCGTGCCAAGGGATTACTTTTACTTTATGTTTCTCAAGATAGATATTCAATTACAATA
66 GGACTTTTCTTGCCAATGCATGGCTTTTTCTTCATGTTTCT-AAGGCAGACATTCAATTATAATC
* * * * * * ******
8441356 TATTTTAATCAACAATGTAAAAAAATTCAATTTAAAATCAATTATGATATTATAAAGCCNNNNNN
130 TGTTTTAACCAAAAATATAAAAAAA-TCAACTTAAAATCAATTATGAGATTATAAA-CCATTTAA
**** * * *
8441421 NNNNAGTAATAAGGCTTTAGAAGGCATGGGTGACTATAAATGGACCTTTCTTGCTAATGAATGGC
193 AGCAAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGGC
* * * * * * * ** * * *
8441486 CTTTT-TTGATATTTCTTGAGGTAGACATTTAGTTATAATCCATTTTAACCAAAAATGTAAACAT
258 TTTTTCTTCATGTTTCTTGAAGTAAACATTCAATTATAATCTGTTTTAACTAAAAATATAAA-AA
* *
8441550 ATTCT-GCCTAAAATCGAT
322 ATT-TAACCTAAAATCAAT
* * * *
8441568 TATGAGATTATAAAACCATATAAAGC-GAGTAATAACGCTTTCAAAGGTATAAGTGACTATAAAT
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCGAAGGTATGAGTGACTATAAAT
* * * * * * * * *
8441632 GAACTTTTCATGTCAATGGATGGCTTTTGCTTCTTGTTTACCAAGACAGACATTCAATTATAATA
66 GGACTTTTCTTGCCAATGCATGGCTTTTTCTTCATGTTT-CTAAGGCAGACATTCAATTATAATC
* ** * * * * ** *********
8441697 TATTTTAATAAAAAATGTAAAGAATTCAACTTAAAATCAAGTACAAGATTNNNNNNNNNNTTAAA
130 TGTTTTAACCAAAAATATAAAAAAATCAACTTAAAATCAATTATGAGATT-ATAAACCATTTAAA
* * * * * * *
8441762 GCGAGTAATAATGCTTTTGAAGGCATGAGTGACTATAAAT-GAGCTGTTCTCT-CCAATAAATGT
194 GCAAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGA-CTTTTCT-TGCCAATGAATGG
* * * * * * * *
8441825 CTTTTGT-TTTATTTTTCTTG-AGATAGACATTTAATTTTTATAC-ATTTTGA-TGAAAAATATA
257 CTTTT-TCTTCATGTTTCTTGAAG-TAAACATTCAATTATAAT-CTGTTTTAACT-AAAAATAT-
* ******
8441886 AAAAAATTTAACTTAAANNNNNN
317 AAAAAATTTAACCTAAAATCAAT
**** * ** * * * *
8441909 NNNNAGATTATAAAACCATTTAAAGTA-AGTAACGAGGCTTTTGAAGACT-TGAGTAACTCTAAA
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCGAAG-GTATGAGTGACTATAAA
* * * * * *
8441972 TGGACTTTT-TATGCCAATTG-ATGGCTTTTGCTTTACGTTTGTCAAGGCAGATATTCAATTGTA
65 TGGACTTTTCT-TGCCAA-TGCATGGCTTTTTCTTCATGTTTCT-AAGGCAGACATTCAATTATA
* * * * * * * *
8442035 ATATATTTTTATCAAAAATGTAAAAATATTCTACTTAAAATTAATTATGAGATTATAAAACCATT
127 ATCTGTTTTAACCAAAAATATAAAAA-AATCAACTTAAAATCAATTATGAGATTAT-AAACCATT
* ************ * * * *
8442100 TAAAGCAAGTAATAAGGATTTNNNNNNNNNNNATAACTATAAATAGACTTTTGTTGTCAATGAAT
190 TAAAGCAAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGAAT
* * * * ** * *
8442165 GATCATTTTT-TTCATGTTTCTCGAGGTAAACATTCAATTATAATATCCTTTAAC-CAAAATGTA
255 G-GC-TTTTTCTTCATGTTTCTTGAAGTAAACATTCAATTATAATCTGTTTTAACTAAAAATAT-
*
8442228 AAAAAATCTAACCT-AAATCAAT
317 AAAAAATTTAACCTAAAATCAAT
* * *
8442250 CATGAAATTATAAAACCATTTAAA--ATGAGTAATAAGGCTTTCGAAGGCATG-GATGACTATAA
1 TATGAGATTATAAAACCATTTAAAGCA-GAGTAATAAGGCTTTCGAAGGTATGAG-TGACTATAA
* * ** * ** * * *
8442312 ATGGAC-TTTCTTGCTAATGCATGGCTTTTTCTCCACATTTATAAGATAGAAAATCAATTACAAT
64 ATGGACTTTTCTTGCCAATGCATGGCTTTTTCTTCATGTTTCTAAGGCAGACATTCAATTATAAT
** * ********** * *
8442376 CTGTTTTAATTAAAAATGTAAAAAAATTCNNNNNNNNNNCAATTATGAGGTTATAAAACCATCTA
129 CTGTTTTAACCAAAAATATAAAAAAA-TCAACTTAAAATCAATTATGAGATTAT-AAACCATTTA
* * ** * *
8442441 AAG-AGAGAAACAAGGCTTTTAAAGGCTTGGTTGACTATAAATGGA-TTTT-TTGCATCAAT-AG
192 AAGCA-AGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGC--CAATGA-
* ** * ** * * *
8442502 ATGGCTTTTACTTCACATTTCCT-AAGATCGACTTTCAATTATAATATATTTTAA-TCAAAAATA
253 ATGGCTTTTTCTTCATGTTTCTTGAAG-TAAACATTCAATTATAATCTGTTTTAACT-AAAAATA
*
8442565 TAAAAAAATTTAACCTTAAATCAAT
316 T-AAAAAATTTAACCTAAAATCAAT
* * * * * *
8442590 TTTAAGATTGTAAAACCATTTAAA--ATGAGTAATAAGGCTTTTGAA-ATCTTGAGTGACTATAA
1 TATGAGATTATAAAACCATTTAAAGCA-GAGTAATAAGGCTTTCGAAGGT-ATGAGTGACTATAA
* ** * ** * *
8442652 ATGGACTTTTCCTATCAATGAAT-GCTTTTTTCTTCCA-GTCCCCTAAGGTAAACATTCAATTAT
64 ATGGACTTTTCTTGCCAATGCATGGC-TTTTTCTT-CATGT-TTCTAAGGCAGACATTCAATTAT
* * * * * * * ******
8442715 AATTTGTTTTAACTAAAAATGTAAAAGCATTTAACTTAAAATCAATTATGAGATTCTANNNNNNN
126 AATCTGTTTTAACCAAAAATATAAAA-AAATCAACTTAAAATCAATTATGAGATTATA-AACCAT
*** * *
8442780 NNNAAGCAAGTAATAAGGCCTTT-GAAGGTATGAGTGACTATAAATGGACCTTTTCTAT--CAAT
189 TTAAAGCAAGTAATAAGG-CTTTCGAAGGCATGGGTGACTATAAATGGA-CTTTTCT-TGCCAAT
* * * ** ** * * * * *
8442842 GCATAGCATTTTCTTCACATTT-TCAAAGGTAGACATTTAATGATAATCTATTTTAACAAAAAAT
251 GAATGGCTTTTTCTTCATGTTTCTTGAA-GTAAACATTCAATTATAATCTGTTTTAACTAAAAAT
* * **********
8442906 ACAAAAAAATTCAANNNNNNNNNNAT
315 A-TAAAAAATTTAACCTAAAATCAAT
* * * * *
8442932 TATGAGATTATAAAACCATTTAAA--ATGAATAATGAGGCTTTCAAAGACT-TCG-GTGACTATT
1 TATGAGATTATAAAACCATTTAAAGCA-GAGTAATAAGGCTTTCGAAG-GTAT-GAGTGACTATA
* ********** * *
8442993 AATGGACTTTTCTTACNNNNNNNNNNCTTTTTCTTCATATTTTCTGAGGTC-GACATTCAATTAT
63 AATGGACTTTTCTTGCCAATGCATGGCTTTTTCTTCAT-GTTTCTAAGG-CAGACATTCAATTAT
* ** * *
8443057 AATATGTTTTAACCAAAAATATAAAAACAATTGACTTAAGATCAATTAGGAGATTATAAAACCAT
126 AATCTGTTTTAACCAAAAATATAAAAA-AATCAACTTAAAATCAATTATGAGATTAT-AAACCAT
* * ** * **
8443122 TTAAAGCGAGTAATAAGGCTTTCAAATCCATGGGTGACTATAAATGAACTTTTCTTATCAATGAA
189 TTAAAGCAAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGAA
* * * *
8443187 TGGCTTTTTCTTCACAT-TTTCTATG--GCAAACATTCAATTATAATATGTTTTAACTGAAAATG
254 TGGCTTTTTCTT--CATGTTTCT-TGAAGTAAACATTCAATTATAATCTGTTTTAACTAAAAATA
*
8443249 TAAAAGAATTCAACCTAAAATCAAT
316 TAAAA-AATTTAACCTAAAATCAAT
* * * * *
8443274 TATTAGATTA-GAAA-CATTTTGTAGGAGC-GGGTTAAT-A-G-ATTCGAAGGTCGATGGAAGCT
1 TATGAGATTATAAAACCA--TT-TA-AAGCAGAG-TAATAAGGCTTTCGAAGGT--AT-G-A---
* * * *
8443333 GGCTGGCAACTGATAAATGGACTTTTCTTCCCAATGCATAGCTTTTTTTTCATGTTTCTTGAA-A
54 -G-T-G--ACT-ATAAATGGACTTTTCTTGCCAATGCATGGCTTTTTCTTCATGTTTC-T-AAGG
* * * * * ** *
8443397 TAAACATTCAGTTATAATCTGTTTTAATCAAAAATGTAAAAACTTCAACTCAAAATCAATTATGA
111 CAGACATTCAATTATAATCTGTTTTAACCAAAAATATAAAAAAATCAACTTAAAATCAATTATGA
* * * ** * * * * *
8443462 GGTTTTAAAGCCATCTAAAGTGATTAAAAAGGCTTTCGAAGGCTTGGGTAACTATAAATGAACTT
176 GATTATAAA-CCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTT
* * ** * * **
8443527 TT-TGTGCCAAT-AGATGGCTTTTGT-TACATGTTT-TCTAAAACAGACATTTAATTATAAAAT-
240 TTCT-TGCCAATGA-ATGGCTTTT-TCTTCATGTTTCT-TGAAGTAAACATTCAATTATAATCTG
* * * *
8443587 ATTTAA-TCAAAAATGTAAAACAATTTAACTTAAAATGAAT
301 TTTTAACT-AAAAATATAAAA-AATTTAACCTAAAATCAAT
* * * * *
8443627 TTTGAGATTATAAAATCATTTAAAG-TGAGTAATAAGGCTTTCAAAGGCT-TG-GTTGACTATAT
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCGAAGG-TATGAG-TGACTATAA
* ** * * * *
8443689 ATGGACTTTTATTGTTAGTGAATGGCTTTTTCCTCATGTTTCTCAAGGTAGACATTCAATTATAA
64 ATGGACTTTTCTTGCCAATGCATGGCTTTTTCTTCATGTTTCT-AAGGCAGACATTCAATTATAA
* * * * * *
8443754 TCAGTTTTAACAAAAAATATAACAAAATTCAACTTAAAATTAACTATAAGATTATAAAACCATTT
128 TCTGTTTTAACCAAAAATATAA-AAAAATCAACTTAAAATCAATTATGAGATTAT-AAACCATTT
* ** * *
8443819 AAAGCAAGTAATAAGGCTTTCGACGGCATGGGTGACTATAAATAAACTTTTCTTGTCAAGGAATG
191 AAAGCAAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATG
** * * * * * * * *
8443884 ATTTTTTCTTCATGTTTCCTGAGGCAGATAATCAATTATAATCTATTTTAACCAAAAATATAAAA
256 GCTTTTTCTTCATGTTTCTTGAAGTAAACATTCAATTATAATCTGTTTTAACTAAAAATAT-AAA
* * * *
8443949 AAATTCAATCTAAAATTAAC
320 AAATTTAACCTAAAATCAAT
* * * * *
8443969 TATGAGATTATAAAACCATTGAAAGCA-AGTAATAAGACCTTCGAAGGCATGGGCT-ACTATAAA
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCGAAGGTATGAG-TGACTATAAA
* * *
8444032 TGGACTTTTCTTGCCAATGCATAGCTTTTTCTTTATGTTTCCTAAGGCAGATATTCAA-TATAAT
65 TGGACTTTTCTTGCCAATGCATGGCTTTTTCTTCATGTTT-CTAAGGCAGACATTCAATTATAAT
* * * * * **
8444096 CCGTTTTAACTAAAAATGTAAAAAAAATTCAACTTCAGATCAATTATGAGATTATAAAATTATTT
129 CTGTTTTAACCAAAAATAT-AAAAAAA-TCAACTTAAAATCAATTATGAGATTAT-AAACCATTT
* ** *
8444161 GAAGTGAGTAATAAGGCATTT-GAAGGC-TCGGGTGACTATAAATGGACTTTT-TTGCTAATGAA
191 AAAGCAAGTAATAAGGC-TTTCGAAGGCAT-GGGTGACTATAAATGGACTTTTCTTGCCAATGAA
* * * * *
8444223 TGG-TTTTTCTTCATATTTTTTGAGGCAAACATTTC-ATTATAATCTGTTTTAACTAAAACTATA
254 TGGCTTTTTCTTCATGTTTCTTGAAGTAAACA-TTCAATTATAATCTGTTTTAACTAAAAATATA
* * * *
8444286 TAAGAATTCAACTTAAAATCATT
318 -AAAAATTTAACCTAAAATCAAT
* **
8444309 TATGAGGTTATAAAACCATTTAAAGC-GAGTAATAAGGCTTTCGAAGACAT-AGGTGACTATAAA
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCGAAGGTATGA-GTGACTATAAA
** * * *
8444372 TGGACTTTTCTT-CCTAATAAATGGCTTTTTCTTTACGTTTCTCTAA-GCAGACATTCTATTATA
65 TGGACTTTTCTTGCC-AATGCATGGCTTTTTCTTCATG-TT-TCTAAGGCAGACATTCAATTATA
* * * * * *
8444435 TTCTATTTTAACTAAAACTGTAAAAATATTCAACTTAAAATCAATTATGAGA-T-T-----A--T
127 ATCTGTTTTAACCAAAAATATAAAAA-AATCAACTTAAAATCAATTATGAGATTATAAACCATTT
* * * *
8444491 -AA--AAG------GG-TTTCGAAGGCATGGGTGACTATAAATGGACTTTTTTTACTACTGAATG
191 AAAGCAAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATG
* * * * *
8444546 GC-TTTTCTTTATGTTTC-TCAAGGCAAACATTCAATTATAATCTATTTTAACTAAAAATGTTAA
256 GCTTTTTCTTCATGTTTCTTGAA-GTAAACATTCAATTATAATCTGTTTTAACTAAAAAT-ATAA
* *
8444609 ACAATTCAA-CTAAAAATCAAT
319 AAAATTTAACCT-AAAATCAAT
* * * * * * *
8444630 TATGGGATTATAAAGCCATTTAAAGC-GAGTAATAAAGCCTTCAAAGGTATGGGTGATTATAAAT
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCGAAGGTATGAGTGACTATAAAT
** * * * * * * * *
8444694 AAACTTTT-TGTGCCAATGCATAGTTTTTTCTTTGCAT-ATT-TGAGACAGATAATCAGTTATAA
66 GGACTTTTCT-TGCCAATGCATGGCTTTTTC-TT-CATGTTTCTAAGGCAGACATTCAATTATAA
** * * *
8444756 TCTGTTTTAATAAAAAATATAAAAAAATTGAATTTAAAATTAATTATGAGATTATAAAACCATTT
128 TCTGTTTTAACCAAAAATATAAAAAAA-TCAACTTAAAATCAATTATGAGATTAT-AAACCATTT
* * * * * * * * *
8444821 AAAACGAGTAATAGGGATTTTGAAGGCAAGGGTGACTATAAGTAGACTTTTCTTACCAATGAATG
191 AAAGCAAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATG
* * * * * * * *
8444886 ACTTTTTTTTTCAAGTTTCTTGAGGTAAAGATTCAATTATAATATAG-TTTAAC-CAAAATGTGA
256 GC-TTTTTCTTCATGTTTCTTGAAGTAAACATTCAATTATAATCT-GTTTTAACTAAAAATAT-A
8444949 AAAAATTTAACCTAAAATCAAT
318 AAAAATTTAACCTAAAATCAAT
* * * * * *
8444971 TATAAGATTGTAAAACTATTTAAAG-TGAGTAATAAGGCTTT-GAAAGGCAT-AGGTGACAATAA
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCG-AAGGTATGA-GTGACTATAA
* * * * * * * * * *
8445033 ATGAACTTTTCTTTCTAATGCATGGCTTTTTCTTCACGTTTTTGAGACAGACAATCAGTTATGAT
64 ATGGACTTTTCTTGCCAATGCATGGCTTTTTCTTCATGTTTCTAAGGCAGACATTCAATTATAAT
* * * * **
8445098 CTGTTTTAACCCAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGTTTATAAAACTATCAA
129 CTGTTTTAACCAAAAATATAAAAAAA-TCAACTTAAAATCAATTATGAGATTAT-AAACCATTTA
** * * * * *
8445163 AAGTGAGTAACAAGGCTTTCGAAGGCTTAGGTGACAATAAATGGACTTTTCGTGCCAAT-AGATG
192 AAGCAAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGA-ATG
* * * * * *
8445227 GCTTTTGCTTCATGTTTCCTG-AG-ACATGCTTTCAATTATAATAT-TTTTAA-TCAAAAATGTA
256 GCTTTTTCTTCATGTTTCTTGAAGTA-A-ACATTCAATTATAATCTGTTTTAACT-AAAAATAT-
* *
8445288 AAAAAATTTAACCGACAATCAAT
317 AAAAAATTTAACCTAAAATCAAT
* * * * *
8445311 TTTTAGATTATAAAACTATTTAAAG-TGAGTAATAAGGCTTTCGAGGGCT-TCG-GTGACTATAA
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCGAAGG-TAT-GAGTGACTATAA
* * * * * * * *
8445373 ATGGACTTTTTTTGTCAATG-AGTAGCTTTTTCTTCATGTTTCTCGATGTAGACAATCCATTATA
64 ATGGACTTTTCTTGCCAATGCA-TGGCTTTTTCTTCATGTTTCT-AAGGCAGACATTCAATTATA
* * * * * *
8445437 ATATGTTTTAACCAAAAATATAAAAGAATTCTACTTAAAATCAACTATGAGATCATAAAATCATT
127 ATCTGTTTTAACCAAAAATATAAAA-AAATCAACTTAAAATCAATTATGAGATTAT-AAACCATT
* * * * *
8445502 TAAAGCAAGTAATAAGGCTTTTGAAGGCGTGAGTGACTATGAATGAAC-TTTCTTGCCAATGAAT
190 TAAAGCAAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGAAT
* * * * *
8445566 AGCTTTTTCTTCATATTT-TTTAAGGTAAATATTCAATTATAATATGTTTTAA-TCAAAAATATA
255 GGCTTTTTCTTCATGTTTCTTGAA-GTAAACATTCAATTATAATCTGTTTTAACT-AAAAATATA
*
8445629 AAAAATTCAACCTAAAATCAAT
318 AAAAATTTAACCTAAAATCAAT
* * * * *
8445651 TATGAGATTATAAAACCATTGAAAG-TGAATAATAAGGCATTCGAAGGTATGAGTGACTATATAT
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCGAAGGTATGAGTGACTATAAAT
* * * * * * * *
8445715 AGACTTTTTTTACCAATGCATGGCGTTTTCTTCCTGTTTCCCAAGACAAACATTCAATTATAATC
66 GGACTTTTCTTGCCAATGCATGGCTTTTTCTTCATGTTT-CTAAGGCAGACATTCAATTATAATC
** * *
8445780 TG-TTTAACTGAAAATATAAATAAATTCAACTAAAAATCAATTATGAGATTATAAAGCCATTTAA
130 TGTTTTAACCAAAAATATAAA-AAAATCAACTTAAAATCAATTATGAGATTATAAA-CCATTTAA
* * * * *
8445844 AGCGAA-TAATAAGGCCTTCAAAGGCATGGGTAACTATAAATGGACTTTTCTCGCCAATGCA-GG
193 AGC-AAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGG
* ** * * * *
8445907 ACTTTTTCTTTATGTTTCCCCAGATAG-ATA-ATT-AATCATAATCTGTTTTAATTAAAAATGTA
257 -CTTTTTCTTCATGTTT--CTTGA-AGTAAACATTCAATTATAATCTGTTTTAACTAAAAATATA
* *
8445969 AACAAATTCAACTTAAAATCAAT
318 AA-AAATTTAACCTAAAATCAAT
* * * * *
8445992 TATGACATTATAAAACCATCTAAAGC-GAGTAACAAGGCTTTTGAAGGCT-T-ATGTGACTACAA
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCGAAGG-TATGA-GTGACTATAA
* * ** ** * * *
8446054 ATGGA-TTTTTTGTGCCAATGGATGGCTTTTGGTTCACATTTCTCAAGACAGACATTCAATTCTG
64 ATGGACTTTTCT-TGCCAATGCATGGCTTTTTCTTCATGTTTCT-AAGGCAGACATTCAATTATA
* * * * * * *
8446118 ATATATTTTAGCC-AAAATATAAAAAAATTCAACTTAAAATCAATTTTTAGAGTACAAAACCATT
127 ATCTGTTTTAACCAAAAATATAAAAAAA-TCAACTTAAAATCAATTATGAGATTA-TAAACCATT
* * * * * * ** * **
8446182 TAAAGTAAGAAATAAGGCTTTTGAAGGAATAGGTAACTATAAACAGACTTTTCTAGCCAACAAAT
190 TAAAGCAAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGAAT
* * ** *
8446247 GTC-TTTTCTTCACGTTTCTCATG--GTAAACATTCAATTATTGTCTG-TTTAACTAAAAATGTA
255 GGCTTTTTCTTCATGTTTCT--TGAAGTAAACATTCAATTATAATCTGTTTTAACTAAAAATATA
*
8446308 AAAATATTTAACTTAAAATCAAT
318 AAAA-ATTTAACCTAAAATCAAT
* * *
8446331 TATGAGATTATAAAACCATTTTAAG-TGAGTAACAAGGCTTTCGAAGGCT-TGAGTGACTATAAA
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCGAAGG-TATGAGTGACTATAAA
* * **
8446394 TGGACTTTTCTTGCCAATGAACT-ACTTTTTCTTCATGTTCTCTAAGATAGACATTCAATTATAA
65 TGGACTTTTCTTGCCAATGCA-TGGCTTTTTCTTCATGTT-TCTAAGGCAGACATTCAATTATAA
* * * *
8446458 TCTGTTTCAACCAAAAATGTAAAAAAATTCAACTAAAAATCAATTATGTGATTATAAACCATTTA
128 TCTGTTTTAACCAAAAATATAAAAAAA-TCAACTTAAAATCAATTATGAGATTATAAACCATTTA
* ** ** * *
8446523 AAGCAAGTAATAAGGCTTCCGAAGAAATGGACGACTATAAATGGGCTTTGCTTGCCAATGAATGG
192 AAGCAAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGG
* * * * * * *
8446588 CTCTTTCTTCACGTTTCCT-AAG-ACGAATATTCAATCATAATCTATTTTAACCAAAAATATAAA
257 CTTTTTCTTCATGTTTCTTGAAGTA--AACATTCAATTATAATCTGTTTTAACTAAAAATATAAA
* *
8446651 AACATTCAACTTAAAATCAAT
320 AA-ATTTAACCTAAAATCAAT
* * * *
8446672 GATGAGATTATAAAACCATTTAAAG-TGAGTAATAAGGCTTTCGAAGGCATGTGTGACTATAAAT
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCGAAGGTATGAGTGACTATAAAT
* * * *
8446736 GGGCTTTTCTTACCAATGAATGGCTTTTTCTTCACAT-TTTCTAAGGCAGACATTCAATTATAGT
66 GGACTTTTCTTGCCAATGCATGGCTTTTTCTT--CATGTTTCTAAGGCAGACATTCAATTATAAT
* * * *
8446800 CTGTTTTAGCTAAAAATATAAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACTATTT
129 CTGTTTTAACCAAAAATAT-AAAAAAA-TCAACTTAAAATCAATTATGAGATTAT-AAACCATTT
* * * * *
8446865 AAAGTAAGTAATAAGGCTTTCGAAGGAATGAGTGACTATAAATGGGCTTTGCTTGCCAATGAATG
191 AAAGCAAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATG
* * * * * * *
8446930 GTTTTTTCTTCACGTTTCCT-AAGGTGAACATTCAATCATAATCTATTTTAACTAAAAATGTAAA
256 GCTTTTTCTTCATGTTTCTTGAA-GTAAACATTCAATTATAATCTGTTTTAACTAAAAATATAAA
* *
8446994 AAATTCAGCCTAAAATCAAT
320 AAATTTAACCTAAAATCAAT
* * * * *
8447014 TATGAGATTATAAAACTATTTAAAGC-GAGTAATAAGGCTTTTGATGGAATGCGTGACTATAAAT
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCGAAGGTATGAGTGACTATAAAT
* * * * * * * * *
8447078 AGACCTTTCTTGCTAATG-ACTGCCATTTTCTTCATCTTTCTTGAGGTAGACATTCAATTACAAT
66 GGACTTTTCTTGCCAATGCA-TGGCTTTTTCTTCATGTTTC-TAAGGCAGACATTCAATTATAAT
* * * * * * *
8447142 CTATTTGAACCAAAATTGTAAAAAAATTCAATTTCACATCAATTATGAGATTATAAAACCATTTA
129 CTGTTTTAACCAAAAATATAAAAAAA-TCAACTTAAAATCAATTATGAGATTAT-AAACCATTTA
* * * * * *** *
8447207 AACCGAGTAATAGGGCTTTCGAAGGCACGGTCGGTGACTATAAATGGATTTTTCTAATCAATGCA
192 AAGCAAGTAATAAGGCTTTCGAAGGCA---TGGGTGACTATAAATGGACTTTTCTTGCCAATGAA
*** * * * * *
8447272 TTATTTTTTCTT--TGTTTTCCCT--AGATAAATAATCAATTATAATCAGTTTTAACTAAAAATG
254 TGGCTTTTTCTTCATG-TTT-CTTGAAG-TAAACATTCAATTATAATCTGTTTTAACTAAAAATA
* * * *
8447333 TAAAAAATTCAACTTCAAATAAAT
316 TAAAAAATTTAACCTAAAATCAAT
* * * * ** ** * *
8447357 TATGAGATTATAAAACGATCTAAAGC-TAGTAACAAAACTTTTAAAGGTTTGAGTGACGATAAAT
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCGAAGGTATGAGTGACTATAAAT
* * * * * *
8447421 AGA-TTTT-TTGTACCAATGGATAGCTTTTGCTTCATATTTCTCAGGACAGACATTCAATTATAA
66 GGACTTTTCTTG--CCAATGCATGGCTTTTTCTTCATGTTTCTAAGG-CAGACATTCAATTATAA
* * * * ** * * * *
8447484 TATATTTTGATCAAAAATATAAACAATTTTAATTTAAAACCAATTATGATATTATAAAGCCATTT
128 TCTGTTTTAACCAAAAATATAAA-AAAATCAACTTAAAATCAATTATGAGATTATAAA-CCATTT
** * * * * *
8447549 AAAGTGAGTAATAAGAC-TT-GAAAGACATGGGTGGCTATAAATGGACCTTACTTGCCAATGAAT
191 AAAGCAAGTAATAAGGCTTTCG-AAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGAAT
* * * * * *
8447612 GTCTTTTTCTTCTTGTTTCTTGAGGTAGACATTCAGTTATAATCTGTTTTAACTAAAAATGTATA
255 GGCTTTTTCTTCATGTTTCTTGAAGTAAACATTCAATTATAATCTGTTTTAACTAAAAATATA-A
*
8447677 AAACTTCT-ACCTAAAATCAAT
319 AAAATT-TAACCTAAAATCAAT
* * * * * *
8447698 TATGAGATTATAAAACGATTTAAAG-TGAGTAATAATGCTTTCAAAGGCATAAGTGACTATAAAT
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCGAAGGTATGAGTGACTATAAAT
* * * * * * * *
8447762 GGACTTTTCGTGCCAATGGATGGCTTTTGCTTCATGTTTCTTGAGACAGACATTCAATTGTTATA
66 GGACTTTTCTTGCCAATGCATGGCTTTTTCTTCATGTTTC-TAAGGCAGACATTCAATTATAATC
* ** * * * *
8447827 TATTTTAATAAAAAATATAAGGAAATTCAACTTAAAATCAATTATAAGATTATAAAACTATTTAA
130 TGTTTTAACCAAAAATATAA-AAAAATCAACTTAAAATCAATTATGAGATTAT-AAACCATTTAA
** * * ** * * * ** * * *
8447892 AGTGAGTAATAATGCTTTTGAATACATGAGTGATTGTAAATAAACTTTTCTCT-ACAATGGATGT
193 AGCAAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCT-TGCCAATGAATGG
* * * * * * *
8447956 CTTTTCCTTCATGCTT-TTG-AG-ACAGACATTCAATTTTTATATATTTTGACTAAAAATATAAA
257 CTTTTTCTTCATGTTTCTTGAAGTA-A-ACATTCAATTATAATCTGTTTTAACTAAAAATAT-AA
*
8448018 AAAATTTAACTTAAAATCAAT
319 AAAATTTAACCTAAAATCAAT
* * ** * * *
8448039 TATGAGATTATAAAACCATTTAAAGTA-ATTAGCAAAGCTTTCGAAGGCT-TGAAT-AGCTACAA
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCGAAGG-TATGAGTGA-CTATAA
* ** * * ** * * ** * *
8448101 ATGGACTTTTCGTATCAATAG-ATGGCTTTTGCCTCACATTTGTTGAGATAGATATTCAATTATT
64 ATGGACTTTTCTTGCCAAT-GCATGGCTTTTTCTTCATGTTT-CTAAGGCAGACATTCAATTATA
* * ** ** * * *
8448165 ATATATTTTAATTAAAAATATAAAAAAATTTATTTGAAAATTAATTATGAGATTGTAAAACCATT
127 ATCTGTTTTAACCAAAAATATAAAAAAATCAACTT-AAAATCAATTATGAGATTAT-AAACCATT
* * * * * ** **
8448230 TAAAGCGAGTAATAGGGATTTTGAAAGCATAAGTGACTATAAATGGACTTTTCTTATCAATGAAT
190 TAAAGCAAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGAAT
* * *
8448295 GGCTATTTTTTTTCATGTTTCTT-AAGCTAAACATTCAATTATAATATGTTTT-AC-ACAAAATT
255 GGC--TTTTTCTTCATGTTTCTTGAAG-TAAACATTCAATTATAATCTGTTTTAACTA-AAAATA
* *
8448357 TAAAAAATTCAACCGAAAATCAAT
316 TAAAAAATTTAACCTAAAATCAAT
* ** * * *
8448381 TATGAGATTATAAAACCATTTAAA--ATGAGTAATAAGGCCTTAAAATGCATGGGTGACTATAAA
1 TATGAGATTATAAAACCATTTAAAGCA-GAGTAATAAGGCTTTCGAAGGTATGAGTGACTATAAA
* * **
8448444 TGGACTTTTCTTGCTAATCCATGGCTTTTTC-TCTATGTTTCTAAGATAGACAATT-AATTATAA
65 TGGACTTTTCTTGCCAATGCATGGCTTTTTCTTC-ATGTTTCTAAGGCAGAC-ATTCAATTATAA
* ** * * * * *
8448507 TCTGTTTTAACTAAAAATGCAAAAAAATTTAACTCAAAATTAATTATGAGGTTATAAAACCATCT
128 TCTGTTTTAACCAAAAATATAAAAAAA-TCAACTTAAAATCAATTATGAGATTAT-AAACCATTT
* * * * * * * ** *
8448572 AAAGCGACTAACAAAGATTTAGAAGGC-T---TG-------GT-GACTTTTCAAGCCAATAAATG
191 AAAGCAAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATG
* * * * * * **
8448625 GCTTTTTTTTCATGTTTCCTG-AG-ACAGACTTTTAATTATAGTATACTTTAA-TAAAAA-AGGT
256 GCTTTTTCTTCATGTTTCTTGAAGTA-A-ACATTCAATTATAATCTGTTTTAACTAAAAATA--T
*
8448686 AAAACAAATTAACCTAAAATCAAT
317 AAAA-AATTTAACCTAAAATCAAT
* * * * *
8448710 TTTGAGATTATAAAACCATTTAAAG-TGAGTAAAAAGGCTTTCGAAGGCT-TGGGTGACTACAAA
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCGAAGG-TATGAGTGACTATAAA
* * * * * * * * * ** *
8448773 TGAACTTTTTTTACTAATG-AGTAGCTTTTTCTTCATGTTTGCCAGGGTAAACATTCAAGCACAA
65 TGGACTTTTCTTGCCAATGCA-TGGCTTTTTCTTCATGTTT-CTAAGGCAGACATTCAATTATAA
** * *
8448837 TCTGTTTTAAATAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAAATTATAAAATCATTT
128 TCTGTTTTAACCAAAAATATAAAAAAA-TCAACTTAAAATCAATTATGAGATTAT-AAACCATTT
* * * * *
8448902 AAAGCTAGGAATAAGGCTTTCAAAGGCATGGGTGACTATAAATGAAC-TTTCCTGCCAATGAAT-
191 AAAGCAAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATG
* * * *
8448965 GCTTTTGCTTCATGTTTTCTT--AGTCAAACATTCAATTATAATATGTTTTAATTAAAAATGTAA
256 GCTTTTTCTTCATG-TTTCTTGAAGT-AAACATTCAATTATAATCTGTTTTAACTAAAAATATAA
* *
8449028 AGCAATTCAACCTAAAATCAAT
319 A-AAATTTAACCTAAAATCAAT
* * * * * *
8449050 TATGAGATTATAAAACCTTTTAAAGCA-AGTAATAAGGCCTTCAAAGGCATGGGTGGCTATAAAT
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCGAAGGTATGAGTGACTATAAAT
* * *
8449114 GGACTTTTCTTACCAATGCATGGCTTTTTCTTCATGTTTCCTGAGGCAGACATTTAATTATAATC
66 GGACTTTTCTTGCCAATGCATGGCTTTTTCTTCATGTTT-CTAAGGCAGACATTCAATTATAATC
* * * * * * *
8449179 CGTTTTAATCAAAATTGTAAAAACATTCAACTTAAAATGAATTATGAGATTATAAAACTATTTGA
130 TGTTTTAACCAAAAATATAAAAA-AATCAACTTAAAATCAATTATGAGATTAT-AAACCATTT-A
* * * * *
8449244 AA-CGAGTAACAAGGCTTTC---GGCTTGGGTGACTATAAATCGACTTTTCTTTTG-TAATGAAT
192 AAGCAAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTC--TTGCCAATGAAT
* * * * * * * * * *
8449304 -GATTTTGCTTCATGTTTCGTGAGGCAAACATTCCATTATAATCTGTTTTAACCAAAACTGTGCA
255 GGCTTTTTCTTCATGTTTCTTGAAGTAAACATTCAATTATAATCTGTTTTAACTAAAAATAT-AA
* * *
8449368 AGAATTCAACTTAAAATCAAT
319 AAAATTTAACCTAAAATCAAT
* * *
8449389 TGTGAGATTATAAAACCATTTAAAGCA-AGTAATAAGGCTTTCAAAGGTA-CAGATGACTATAAA
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCGAAGGTATGAG-TGACTATAAA
* * ** ** * * *
8449452 AGAACTTTTCTTGTAAATAAATGGCTTATTCTTCATGTTTCTCAAGGTAGACATTCAATTATATT
65 TGGACTTTTCTTGCCAATGCATGGCTTTTTCTTCATGTTTCT-AAGGCAGACATTCAATTATAAT
* * * * *
8449517 CTGCTTTAACCAAAACTATAAAATAATTTAACTTAAAATCAATTATGAGATTATAAAATCATTTA
129 CTGTTTTAACCAAAAATATAAAA-AAATCAACTTAAAATCAATTATGAGATTAT-AAACCATTTA
* * ** * *
8449582 AAACGAA-TAATAAGGGTTTCGAAGGCATATGTGACTATAAATAGACTTTTCTTGTCAATGAATG
192 AAGC-AAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATG
** * * *
8449646 GCTTTTT-TTCATACTTCTTGAGGTGAACATTCAATTATAATCTATTTTAACTAAAAATATTAAA
256 GCTTTTTCTTCATGTTTCTTGAAGTAAACATTCAATTATAATCTGTTTTAACTAAAAATA-TAAA
* *
8449710 ACATTT-ATCTAAAAATCAAT
320 AAATTTAACCT-AAAATCAAT
* * * * *
8449730 TATCAGATTATAAAACCATTTAAAGC-GAGTAATAAGGCCTT-GAAAGGCATGGGTAACTATAAA
1 TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCG-AAGGTATGAGTGACTATAAA
* * * * *
8449793 TGGACTTTT-TCGCTAATGCATGTCTTTTTC-TCGATGTTTTTGA-G-ATGAACAATT-AATTAT
65 TGGACTTTTCTTGCCAATGCATGGCTTTTTCTTC-ATGTTTCTAAGGCA-G-AC-ATTCAATTAT
* * * *
8449853 AATCTATTTTAACTAAAAATATAAAAACATTTAACTTAAAATCAATTA
126 AATCTGTTTTAACCAAAAATATAAAAA-AATCAACTTAAAATCAATTA
8449901 NNNNNNNNNN
Statistics
Matches: 8833, Mismatches: 2100, Indels: 945
0.74 0.18 0.08
Matches are distributed among these distances:
319 6 0.00
320 88 0.01
321 148 0.02
322 7 0.00
323 1 0.00
325 1 0.00
326 1 0.00
327 42 0.00
328 9 0.00
329 121 0.01
330 91 0.01
331 3 0.00
332 1 0.00
333 2 0.00
334 2 0.00
337 34 0.00
338 69 0.01
339 886 0.10
340 1657 0.19
341 2795 0.32
342 1819 0.21
343 693 0.08
344 90 0.01
345 6 0.00
346 2 0.00
350 6 0.00
351 7 0.00
352 10 0.00
353 57 0.01
354 111 0.01
355 67 0.01
356 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.35
Consensus pattern (339 bp):
TATGAGATTATAAAACCATTTAAAGCAGAGTAATAAGGCTTTCGAAGGTATGAGTGACTATAAAT
GGACTTTTCTTGCCAATGCATGGCTTTTTCTTCATGTTTCTAAGGCAGACATTCAATTATAATCT
GTTTTAACCAAAAATATAAAAAAATCAACTTAAAATCAATTATGAGATTATAAACCATTTAAAGC
AAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGGCTTT
TTCTTCATGTTTCTTGAAGTAAACATTCAATTATAATCTGTTTTAACTAAAAATATAAAAAATTT
AACCTAAAATCAAT
Found at i:8444601 original size:150 final size:151
Alignment explanation
Indices: 8444342--8444643 Score: 430
Period size: 150 Copynumber: 2.0 Consensus size: 151
8444332 AGCGAGTAAT
*
8444342 AAGGCTTTCGAAGACATAGGTGACTATAAATGGACTTTTCTTCCTAATAAATGGCTTTTTCTTTA
1 AAGGCTTTCGAAGACATAGGTGACTATAAATGGACTTTTCTTACTAATAAATGGCTTTTTCTTTA
* * * * *
8444407 CGTTTCTCTAAGCAGACATTCTATTATATTCTATTTTAACTAAAACTG-TAAAAATATTCAACTT
66 CGTTTCTCTAAGCAAACATTCAATTATAATCTATTTTAACTAAAAATGTTAAAAA-ATTCAACTA
8444471 AAAATCAATTATGAGATTATAA
130 AAAATCAATTATGAGATTATAA
* * * * * *
8444493 AAGGGTTTCGAAGGCATGGGTGACTATAAATGGACTTTTTTTACTACTGAATGGC-TTTTCTTTA
1 AAGGCTTTCGAAGACATAGGTGACTATAAATGGACTTTTCTTACTAATAAATGGCTTTTTCTTTA
* *
8444557 TGTTTCTC-AAGGCAAACATTCAATTATAATCTATTTTAACTAAAAATGTTAAACAATTCAACTA
66 CGTTTCTCTAA-GCAAACATTCAATTATAATCTATTTTAACTAAAAATGTTAAAAAATTCAACTA
*
8444621 AAAATCAATTATGGGATTATAA
130 AAAATCAATTATGAGATTATAA
8444643 A
1 A
8444644 GCCATTTAAA
Statistics
Matches: 134, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
149 2 0.01
150 79 0.59
151 53 0.40
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (151 bp):
AAGGCTTTCGAAGACATAGGTGACTATAAATGGACTTTTCTTACTAATAAATGGCTTTTTCTTTA
CGTTTCTCTAAGCAAACATTCAATTATAATCTATTTTAACTAAAAATGTTAAAAAATTCAACTAA
AAATCAATTATGAGATTATAA
Found at i:8445137 original size:170 final size:169
Alignment explanation
Indices: 8444493--8448607 Score: 3138
Period size: 170 Copynumber: 24.1 Consensus size: 169
8444483 GAGATTATAA
* * * * * *
8444493 AAGGGTTTCGAAGGCATGGGTGACTATAAATGGACTTTTTTTACTACTGAATGGC-TTTTCTTTA
1 AAGGCTTT-GAAGGCAT-GGTGACTATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCA
* * * * * * *
8444557 TGTTTCTCAAGGCAAACATTCAATTATAATCTATTTTAACTAAAAATGTTAAACAATTCAACTAA
64 TGTTTCTTAAGACAGACATTCAATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTCAACTTA
* * *
8444622 AAATCAATTATGGGATTATAAAGCCATTTAAAGCGAGTAAT
129 AAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAAT
* ** * * ** * * *
8444663 AAAGCCTTCAAAGGTATGGGTGATTATAAATAAACTTTT-TGTGCCAATGCATAGTTTTTTCTT-
1 -AAGGCTTTGAAGGCAT-GGTGACTATAAATGGACTTTTCT-TGCCAATGAATGGCTTTTTCTTC
* * * * * * *
8444726 -TGCATAT-TTGAGACAGATAATCAGTTATAATCTGTTTTAA-TAAAAAATATAAAAAAATTGAA
63 ATG--TTTCTTAAGACAGACATTCAATTATAATCTGTTTTAACT-AAAAATGTAAAAAAATTCAA
* * **
8444788 TTTAAAATTAATTATGAGATTATAAAACCATTTAAAACGAGTAAT
125 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAAT
* * * * * * * *
8444833 AGGGATTTTGAAGGCAAGGGTGACTATAAGTAGACTTTTCTTACCAATGAATGACTTTTTTTTTC
1 AAGG-CTTTGAAGGC-ATGGTGACTATAAATGGACTTTTCTTGCCAATGAATGGC-TTTTTCTTC
* * ** * * * * * * *
8444898 AAGTTTCTTGAGGTAAAGATTCAATTATAATATAG-TTTAAC-CAAAATGTGAAAAAATTTAACC
63 ATGTTTCTTAAGACAGACATTCAATTATAATCT-GTTTTAACTAAAAATGTAAAAAAATTCAACT
* * *
8444961 TAAAATCAATTATAAGATTGTAAAACTATTTAAAGTGAGTAAT
127 TAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAAT
* * * * *
8445004 AAGGCTTTGAAAGGCATAGGTGACAATAAATGAACTTTTCTTTCTAATGCATGGCTTTTTCTTCA
1 AAGGCTTTG-AAGGCAT-GGTGACTATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCA
* * * * * **
8445069 CGTTT-TTGAGACAGACAATCAGTTATGATCTGTTTTAACCCAAAATGTAAAAAAATTCAACTTA
64 TGTTTCTTAAGACAGACATTCAATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTCAACTTA
* * ** *
8445133 AAATCAATTATGAGTTTATAAAACTATCAAAAGTGAGTAAC
129 AAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAAT
* * * *
8445174 AAGGCTTTCGAAGGCTTAGGTGACAATAAATGGACTTTTCGTGCCAAT-AGATGGCTTTTGCTTC
1 AAGGCTTT-GAAGGCAT-GGTGACTATAAATGGACTTTTCTTGCCAATGA-ATGGCTTTTTCTTC
* * * * *
8445238 ATGTTTCCTGAGACATG-CTTTCAATTATAATAT-TTTTAA-TCAAAAATGTAAAAAAATTTAAC
63 ATGTTTCTTAAGACA-GACATTCAATTATAATCTGTTTTAACT-AAAAATGTAAAAAAATTCAAC
** * * * *
8445300 CGACAATCAATTTTTAGATTATAAAACTATTTAAAGTGAGTAAT
126 TTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAAT
* * * * * *
8445344 AAGGCTTTCGAGGGCTTCGGTGACTATAAATGGACTTTTTTTGTCAATGAGTAGCTTTTTCTTCA
1 AAGGCTTT-GAAGGCAT-GGTGACTATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCA
* * * * * * * * * *
8445409 TGTTTCTCGATG-TAGACAATCCATTATAATATGTTTTAACCAAAAATATAAAAGAATTCTACTT
64 TGTTTCT-TAAGACAGACATTCAATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTCAACTT
* * * **
8445473 AAAATCAACTATGAGATCATAAAATCATTTAAAGCAAGTAAT
128 AAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAAT
* * * *
8445515 AAGGCTTTTGAAGGCGTGAGTGACTATGAATGAAC-TTTCTTGCCAATGAATAGCTTTTTCTTCA
1 AAGGC-TTTGAAGGCATG-GTGACTATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCA
* * ** * * * * *
8445579 TATTTTTTAAGGTAAATATTCAATTATAATATGTTTTAA-TCAAAAATAT-AAAAAATTCAACCT
64 TGTTTCTTAAGACAGACATTCAATTATAATCTGTTTTAACT-AAAAATGTAAAAAAATTCAACTT
* *
8445642 AAAATCAATTATGAGATTATAAAACCATTGAAAGTGAATAAT
128 AAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAAT
* * * * * * * * *
8445684 AAGGCATTCGAAGGTATGAGTGACTATATATAGACTTTTTTTACCAATGCATGGCGTTTTCTTCC
1 AAGGC-TTTGAAGGCATG-GTGACTATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCA
** * * * * *
8445749 TGTTTCCCAAGACAAACATTCAATTATAATCTG-TTTAACTGAAAATATAAATAAATTCAACTAA
64 TGTTTCTTAAGACAGACATTCAATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTCAACTTA
* * *
8445813 AAATCAATTATGAGATTATAAAGCCATTTAAAGCGAATAAT
129 AAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAAT
** * * * *
8445854 AAGGCCTTCAAAGGCATGGGTAACTATAAATGGACTTTTCTCGCCAATGCA-GGACTTTTTCTTT
1 AAGG-CTTTGAAGGCAT-GGTGACTATAAATGGACTTTTCTTGCCAATGAATGG-CTTTTTCTTC
*** * * * * *
8445918 ATGTTTCCCCAGATAGATAATT-AATCATAATCTGTTTTAATTAAAAATGTAAACAAATTCAACT
63 ATGTTTCTTAAGACAGA-CATTCAATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTCAACT
* * * *
8445982 TAAAATCAATTATGACATTATAAAACCATCTAAAGCGAGTAAC
127 TAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAAT
* * * **
8446025 AAGGCTTTTGAAGGCTTAT-GTGACTACAAATGGA-TTTTTTGTGCCAATGGATGGCTTTTGGTT
1 AAGGC-TTTGAAGGC--ATGGTGACTATAAATGGACTTTTCT-TGCCAATGAATGGCTTTTTCTT
** * * * * * * * *
8446088 CACATTTCTCAAGACAGACATTCAATTCTGATATATTTTAGC-CAAAATATAAAAAAATTCAACT
62 CATGTTTCTTAAGACAGACATTCAATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTCAACT
* * * * * *
8446152 TAAAATCAATTTTTAGAGTACAAAACCATTTAAAGTAAGAAAT
127 TAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAAT
* * ** * ** *
8446195 AAGGCTTTTGAAGGAATAGGTAACTATAAACAGACTTTTCTAGCCAACAAATGTC-TTTTCTTCA
1 AAGGC-TTTGAAGGCAT-GGTGACTATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCA
* * * ** * ** * *
8446259 CGTTTCTCATGGTAAACATTCAATTATTGTCTG-TTTAACTAAAAATGTAAAAATATTTAACTTA
64 TGTTTCTTAAGACAGACATTCAATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTCAACTTA
* *
8446323 AAATCAATTATGAGATTATAAAACCATTTTAAGTGAGTAAC
129 AAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAAT
* *
8446364 AAGGCTTTCGAAGGCTTGAGTGACTATAAATGGACTTTTCTTGCCAATGAACT-ACTTTTTCTTC
1 AAGGCTTT-GAAGGCATG-GTGACTATAAATGGACTTTTCTTGCCAATGAA-TGGCTTTTTCTTC
* * *
8446428 ATG-TTCTCTAAGATAGACATTCAATTATAATCTGTTTCAACCAAAAATGTAAAAAAATTCAACT
63 ATGTTTCT-TAAGACAGACATTCAATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTCAACT
* * **
8446492 AAAAATCAATTATGTGATTAT-AAACCATTTAAAGCAAGTAAT
127 TAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAAT
* ** * * * *
8446534 AAGGCTTCCGAAGAAATGGACGACTATAAATGGGCTTTGCTTGCCAATGAATGGCTCTTTCTTCA
1 AAGGCTT-TGAAGGCATGG-TGACTATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCA
* * * * * * * *
8446599 CGTTTCCTAAGAC-GAATATTCAATCATAATCTATTTTAACCAAAAATATAAAAACATTCAACTT
64 TGTTTCTTAAGACAG-ACATTCAATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTCAACTT
*
8446663 AAAATCAATGATGAGATTATAAAACCATTTAAAGTGAGTAAT
128 AAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAAT
* *
8446705 AAGGCTTTCGAAGGCATGTGTGACTATAAATGGGCTTTTCTTACCAATGAATGGCTTTTTCTTCA
1 AAGGCTTT-GAAGGCATG-GTGACTATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTT--
* * * * *
8446770 CAT-TTTC-TAAGGCAGACATTCAATTATAGTCTGTTTTAGCTAAAAATATAAAAAAAATTTAAC
62 CATGTTTCTTAAGACAGACATTCAATTATAATCTGTTTTAACTAAAAATGT-AAAAAAATTCAAC
* *
8446833 TTAAAATCAATTATGAGATTATAAAACTATTTAAAGTAAGTAAT
126 TTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAAT
* * * *
8446877 AAGGCTTTCGAAGGAATGAGTGACTATAAATGGGCTTTGCTTGCCAATGAATGGTTTTTTCTTCA
1 AAGGCTTT-GAAGGCATG-GTGACTATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCA
* * ** * * * *
8446942 CGTTTCCTAAG-GTGAACATTCAATCATAATCTATTTTAACTAAAAATGT-AAAAAATTCAGCCT
64 TGTTTCTTAAGACAG-ACATTCAATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTCAACTT
* *
8447005 AAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAAT
128 AAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAAT
* * * * * * * *
8447047 AAGGCTTTTGATGGAATGCGTGACTATAAATAGACCTTTCTTGCTAATGACTGCCATTTTCTTCA
1 AAGGC-TTTGAAGGCATG-GTGACTATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCA
* * ** * * * * * * *
8447112 TCTTTCTTGAGGTAGACATTCAATTACAATCTATTTGAACCAAAATTGTAAAAAAATTCAATTTC
64 TGTTTCTTAAGACAGACATTCAATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTCAACTTA
* **
8447177 ACATCAATTATGAGATTATAAAACCATTTAAACCGAGTAAT
129 AAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAAT
* * *** * ***
8447218 AGGGCTTTCGAAGGCACGGTCGGTGACTATAAATGGATTTTTCTAATCAATGCATTATTTTTTCT
1 AAGGCTTT-GAAGGCA---T-GGTGACTATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCT
* * * * * *
8447283 T--TGTTTTCCCT-AGATAAATAATCAATTATAATCAGTTTTAACTAAAAATGT-AAAAAATTCA
61 TCATG-TTT-CTTAAGACAGACATTCAATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTCA
* * * * *
8447344 ACTTCAAATAAATTATGAGATTATAAAACGATCTAAAGCT-AGTAAC
124 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAG-TGAGTAAT
** * ** * * * * *
8447390 AAAACTTTTAAAGGTTTGAGTGACGATAAATAGA-TTTT-TTGTACCAATGGATAGCTTTTGCTT
1 AAGGC-TTTGAAGGCATG-GTGACTATAAATGGACTTTTCTTG--CCAATGAATGGCTTTTTCTT
* * * * * * * * * * *
8447453 CATATTTCTCAGGACAGACATTCAATTATAATATATTTTGA-TCAAAAATATAAACAATTTTAAT
62 CATGTTTCTTAAGACAGACATTCAATTATAATCTGTTTTAACT-AAAAATGTAAAAAAATTCAAC
* * *
8447517 TTAAAACCAATTATGATATTATAAAGCCATTTAAAGTGAGTAAT
126 TTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAAT
* * * * * * *
8447561 AAGAC-TTGAAAGACATGGGTGGCTATAAATGGACCTTACTTGCCAATGAATGTCTTTTTCTTCT
1 AAGGCTTTG-AAGGCAT-GGTGACTATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCA
* ** * * * * *
8447625 TGTTTCTTGAGGTAGACATTCAGTTATAATCTGTTTTAACTAAAAATGTATAAAACTTCTACCTA
64 TGTTTCTTAAGACAGACATTCAATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTCAACTTA
*
8447690 AAATCAATTATGAGATTATAAAACGATTTAAAGTGAGTAAT
129 AAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAAT
* * * * * *
8447731 AATGCTTTCAAAGGCATAAGTGACTATAAATGGACTTTTCGTGCCAATGGATGGCTTTTGCTTCA
1 AAGGCTTT-GAAGGCAT-GGTGACTATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCA
* * * * * * **
8447796 TGTTTCTTGAGACAGACATTCAATTGTTATATATTTTAA-TAAAAAATATAAGGAAATTCAACTT
64 TGTTTCTTAAGACAGACATTCAATTATAATCTGTTTTAACT-AAAAATGTAAAAAAATTCAACTT
* *
8447860 AAAATCAATTATAAGATTATAAAACTATTTAAAGTGAGTAAT
128 AAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAAT
* ** * * ** * * * *
8447902 AATGCTTTTGAATACATGAGTGATTGTAAATAAACTTTTCTCT-ACAATGGATGTCTTTTCCTTC
1 AAGGC-TTTGAAGGCATG-GTGACTATAAATGGACTTTTCT-TGCCAATGAATGGCTTTTTCTTC
* * * * * * * * *
8447966 ATGCTT-TTGAGACAGACATTCAATTTTTATATATTTTGACTAAAAATATAAAAAAATTTAACTT
63 ATGTTTCTTAAGACAGACATTCAATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTCAACTT
* * **
8448030 AAAATCAATTATGAGATTATAAAACCATTTAAAGTAATTAGC
128 AAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAAT
* * * * * ** * *
8448072 AAAGCTTTCGAAGGCTTGAAT-AGCTACAAATGGACTTTTCGTATCAAT-AGATGGCTTTTGCCT
1 AAGGCTTT-GAAGGCATG-GTGA-CTATAAATGGACTTTTCTTGCCAATGA-ATGGCTTTTTCTT
** * * * * * * * * * * *
8448135 CACATTTGTTGAGATAGATATTCAATTATTATATATTTTAATTAAAAATATAAAAAAATT-TATT
62 CATGTTTCTTAAGACAGACATTCAATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTCAACT
* * *
8448199 TGAAAATTAATTATGAGATTGTAAAACCATTTAAAGCGAGTAAT
127 T-AAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAAT
* * * * ** *
8448243 AGGGATTTTGAAAGCATAAGTGACTATAAATGGACTTTTCTTATCAATGAATGGCTATTTTTTTT
1 AAGG-CTTTGAAGGCAT-GGTGACTATAAATGGACTTTTCTTGCCAATGAATGGC--TTTTTCTT
* * *
8448308 CATGTTTCTTAAG-CTAAACATTCAATTATAATATGTTTT-AC-ACAAAAT-TTAAAAAATTCAA
62 CATGTTTCTTAAGAC-AGACATTCAATTATAATCTGTTTTAACTA-AAAATGTAAAAAAATTCAA
** *
8448369 CCGAAAATCAATTATGAGATTATAAAACCATTTAAAATGAGTAAT
125 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAAT
** * * **
8448414 AAGGCCTTAAAATGCATGGGTGACTATAAATGGACTTTTCTTGCTAATCCATGGCTTTTTC-TCT
1 AAGG-CTTTGAAGGCAT-GGTGACTATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTC-
* * *
8448478 ATGTTTC-TAAGATAGACAATT-AATTATAATCTGTTTTAACTAAAAATGCAAAAAAATTTAACT
63 ATGTTTCTTAAGACAGAC-ATTCAATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTCAACT
* * * * * * *
8448541 CAAAATTAATTATGAGGTTATAAAACCATCTAAAGCGACTAAC
127 TAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAAT
* * *
8448584 AAAGATTTAGAAGGCTTGGTGACT
1 AAGGCTTT-GAAGGCATGGTGACT
8448608 TTTCAAGCCA
Statistics
Matches: 3123, Mismatches: 695, Indels: 254
0.77 0.17 0.06
Matches are distributed among these distances:
167 1 0.00
168 41 0.01
169 316 0.10
170 1386 0.44
171 1016 0.33
172 252 0.08
173 76 0.02
174 34 0.01
175 1 0.00
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (169 bp):
AAGGCTTTGAAGGCATGGTGACTATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATG
TTTCTTAAGACAGACATTCAATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAA
ATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAAT
Found at i:8448920 original size:171 final size:170
Alignment explanation
Indices: 8448685--8449900 Score: 1095
Period size: 171 Copynumber: 7.2 Consensus size: 170
8448675 ATAAAAAAGG
* * * *
8448685 TAAAACAAATT-AACCTAAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAAAAAGGCT
1 TAAAA-AAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT
* * * * *
8448749 TTCGAAGGCTTGGGTGACTACAAATGAACTTTTTTTACTAATGAGTAGCTTTTTCTTCATGTTTG
65 TTCAAAGGCATGGGTGACTATAAATGAACTTTTTTTAC-AATGAATGGCTTTTTCTTCATGTTT-
** * *
8448814 CCAG-GGTAAACATTCAAGCACAATCTGTTTTAAATAAAAATA
128 CCAGAGGTAAACATTCAATTATAATCTGTTTTAACTAAAAATA
* * * *
8448856 TAAAAAAATTCAACTTAAAATCAATTATGAAATTATAAAATCATTTAAAGCTAGGAATAAGGCTT
1 TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT
** ** * * *
8448921 TCAAAGGCATGGGTGACTATAAATGAACTTTCCTGCCAATGAAT-GCTTTTGCTTCATGTTTTCT
66 TCAAAGGCATGGGTGACTATAAATGAACTTTTTTTACAATGAATGGCTTTTTCTTCATGTTTCCA
* * * *
8448985 TA-GTCAAACATTCAATTATAATATGTTTTAATTAAAAATG
131 GAGGT-AAACATTCAATTATAATCTGTTTTAACTAAAAATA
** * * * *
8449025 TAAAGCAATTCAACCTAAAATCAATTATGAGATTATAAAACCTTTTAAAGCAAGTAATAAGGCCT
1 TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT
* * * *
8449090 TCAAAGGCATGGGTGGCTATAAATGGACTTTTCTTACCAATGCATGGCTTTTTCTTCATGTTTCC
66 TCAAAGGCATGGGTGACTATAAATGAACTTTTTTTA-CAATGAATGGCTTTTTCTTCATGTTTCC
* * * * * * *
8449155 TGAGGCAGACATTTAATTATAATCCGTTTTAA-TCAAAATTG
130 AGAGGTAAACATTCAATTATAATCTGTTTTAACT-AAAAATA
* * * *
8449196 TAAAAACATTCAACTTAAAATGAATTATGAGATTATAAAACTATTTGAAA-CGAGTAACAAGGCT
1 TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTT-AAAGCGAGTAATAAGGCT
* ** * *
8449260 TTC---GGCTTGGGTGACTATAAATCG-ACTTTTCTTTTGTAATGAAT-GATTTTGCTTCATGTT
65 TTCAAAGGCATGGGTGACTATAAAT-GAAC-TTT-TTTTACAATGAATGGCTTTTTCTTCATGTT
** * * * * *
8449320 TCGTGAGGCAAACATTCCATTATAATCTGTTTTAACCAAAACTG
127 TCCAGAGGTAAACATTCAATTATAATCTGTTTTAACTAAAAATA
** * * *
8449364 TGCAAGAATTCAACTTAAAATCAATTGTGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTT
1 TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT
* ** * * * *
8449429 TCAAAGGTACAGATGACTATAAAAGAACTTTTCTTGTA-AATAAATGGCTTATTCTTCATGTTTC
66 TCAAAGGCATGGGTGACTATAAATGAACTTTT-TT-TACAATGAATGGCTTTTTCTTCATGTTTC
* * * * *
8449493 TCA-AGGTAGACATTCAATTATATTCTGCTTTAACCAAAACTA
129 -CAGAGGTAAACATTCAATTATAATCTGTTTTAACTAAAAATA
* * * * * *
8449535 TAAAATAATTTAACTTAAAATCAATTATGAGATTATAAAATCATTTAAAACGAATAATAAGGGTT
1 TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT
* ** **
8449600 TCGAAGGCATATGTGACTATAAAT-AGACTTTTCTTGT-CAATGAATGGCTTTTT-TTCATACTT
66 TCAAAGGCATGGGTGACTATAAATGA-ACTTTT-TT-TACAATGAATGGCTTTTTCTTCATGTTT
** * *
8449662 CTTGAGGTGAACATTCAATTATAATCTATTTTAACTAAAAATA
128 CCAGAGGTAAACATTCAATTATAATCTGTTTTAACTAAAAATA
* * * * * * *
8449705 TTAAAACATTTATCTAAAAATCAATTATCAGATTATAAAACCATTTAAAGCGAGTAATAAGGCCT
1 TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT
* * * ** * *
8449770 TGAAAGGCATGGGTAACTATAAATGGAC-TTTTTCGCTAATGCATGTCTTTTTC-TCGATGTTT-
66 TCAAAGGCATGGGTGACTATAAATGAACTTTTTTTAC-AATGAATGGCTTTTTCTTC-ATGTTTC
** * * *
8449832 TTGAGATGAACAATT-AATTATAATCTATTTTAACTAAAAATA
129 CAGAGGTAAAC-ATTCAATTATAATCTGTTTTAACTAAAAATA
* *
8449874 TAAAAACATTTAACTTAAAATCAATTA
1 TAAAAAAATTCAACTTAAAATCAATTA
8449901 NNNNNNNNNN
Statistics
Matches: 857, Mismatches: 158, Indels: 62
0.80 0.15 0.06
Matches are distributed among these distances:
167 3 0.00
168 129 0.15
169 222 0.26
170 157 0.18
171 342 0.40
172 4 0.00
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (170 bp):
TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT
TCAAAGGCATGGGTGACTATAAATGAACTTTTTTTACAATGAATGGCTTTTTCTTCATGTTTCCA
GAGGTAAACATTCAATTATAATCTGTTTTAACTAAAAATA
Found at i:8450367 original size:170 final size:170
Alignment explanation
Indices: 8450001--8450505 Score: 538
Period size: 170 Copynumber: 3.0 Consensus size: 170
8449991 NNNNNNNNNN
* * ** *
8450001 ACTTAAAATCAATTATGAGATTATAAAATTATTTGAAGTGAGTAATAAGGCTTTCGAAA-GCATA
1 ACTTAAAATCAATTATGAGATTATAAAACTATTTAAAACGAGTAATAAGGCTTTC-AAAGGCATG
* * * * *
8450065 GGTGACTATAAAT-GGCTTTTCTTATCAATGAATGGTTGTTTTTC-ATGTTTCTCGAGCCAAATA
65 GGTGACTATAAATAGACTTTTCTTATCAATGAATGGCT-TTTTTCTACGTTTCTCGAGACAAACA
* * * * *
8450128 TTCATTTATAATCTATTTTAACTAAAAATATTAAAACATTTA
129 TTCAATTATAATCTATTTTAACTAAAAATGTAAAAAAATTAA
* * * *
8450170 ACTAAAAATCAATTATCAGATTATAAAACCATTTAAAACGAGTAATAAGGCCTTCAAAGGCATGG
1 ACTTAAAATCAATTATGAGATTATAAAACTATTTAAAACGAGTAATAAGGCTTTCAAAGGCATGG
** * * *
8450235 GTGACTATAAATAGACTATTT-TTGCCAATGTATGGCTTTTTCTCTACATTTC-AGAGACAAACA
66 GTGACTATAAATAGACT-TTTCTTATCAATGAATGGCTTTTT-TCTACGTTTCTCGAGACAAACA
* * * *
8450298 ATCAGTTATAATCTATTTTAGCTGAAAATGTAAAAAAATTAA
129 TTCAATTATAATCTATTTTAACTAAAAATGTAAAAAAATTAA
* * * * * * ** *
8450340 ATTTAAAATTAATTATGTGATTATAAAACTATTTAAAACGAGTAATAGGGATTTTAAAGGTGTGA
1 ACTTAAAATCAATTATGAGATTATAAAACTATTTAAAACGAGTAATAAGGCTTTCAAAGGCATGG
* **
8450405 GTGACTATAAATAGATTTTTCTTATCAATGAATGGCTTTTTT-TACGTTTCTCGAGGTAAACATT
66 GTGACTATAAATAGACTTTTCTTATCAATGAATGGCTTTTTTCTACGTTTCTCGAGACAAACATT
* * *
8450469 CAATTATAATATGTTTTAAC-CAAAATGTAAAAAAATT
131 CAATTATAATCTATTTTAACTAAAAATGTAAAAAAATT
8450506 CAACCTAANN
Statistics
Matches: 275, Mismatches: 54, Indels: 15
0.80 0.16 0.04
Matches are distributed among these distances:
168 26 0.09
169 97 0.35
170 144 0.52
171 8 0.03
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (170 bp):
ACTTAAAATCAATTATGAGATTATAAAACTATTTAAAACGAGTAATAAGGCTTTCAAAGGCATGG
GTGACTATAAATAGACTTTTCTTATCAATGAATGGCTTTTTTCTACGTTTCTCGAGACAAACATT
CAATTATAATCTATTTTAACTAAAAATGTAAAAAAATTAA
Found at i:8450997 original size:171 final size:168
Alignment explanation
Indices: 8450682--8460281 Score: 3623
Period size: 170 Copynumber: 56.4 Consensus size: 168
8450672 NNNNNNNAGG
* * * * * *
8450682 TTATAAAACCATCTAAAGCGAGTAACAAGACTTTTGAAGG-ATTGGGTGACTGTAAATGAACTTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTCGAAGGCA-TGGGTGACTATAAATGGACTTT
* * * * * * ** * *
8450746 TCATGCCAAT-AGATGGGTTTTGTTCACGTTTCAT-AAGACAAAC-TTACAATTATAATATATTT
64 TCTTACCAATGA-ATGGCTTTTCTTCATGTTTC-TCGAGGTAAACATT-CAATTATAATCTGTTT
* * *
8450808 TAA-TCAAAAATATAAAAAAAAATAAATCTAAAATCAATTATGAGA
126 TAACT-AAAAATGT-AAAAAAATTCAA-CTAAAATCAATTATGAGA
*
8450853 TTATAAAATCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
*
8450918 CTTATCAATGAATGGCTTTT-TTCATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTTAAC
65 CTTACCAATGAATGGCTTTTCTTCATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTTAAC
* * * * * *
8450982 TAAAAATATTAAAAAATTCAATTAAAAATAAATTATCATA
130 TAAAAATGTAAAAAAATTCAACT-AAAATCAATTATGAGA
* * *
8451022 TTATAAAACCATTTAAAGCGAGTAATAAGGCCTTCAAAAGCATGGGTGACTATAAATGGACTTTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
*** * * ** * * * * * *
8451087 CTTTTTAATGAATGGCTTTTTCTTTACGTTTCT-GAGACAAAGAATCAGTTATAATTTATTTTAC
65 CTTACCAATGAATGGC-TTTTCTTCATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTTAA
* * * *
8451151 CTGAAAAATGTAAAAAACTTGAATTTAAAATTAATTATGAGA
129 CT-AAAAATGTAAAAAAATTCAA-CTAAAATCAATTATGAGA
* ** * * *
8451193 TTATAAAACCATTTAAAGTGAGTAAT-AGAAATTTTGAAGGTATGGGTGACTATAAATAGACTTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAG-GCTTTCGAAGGCATGGGTGACTATAAATGGACTTT
** * * * * * *
8451257 TCTTACCAATGAATGATAATTTTTTTTTACGTTTCTCAAGGTAAACATTCTATTATAATATGTTT
64 TCTTACCAATGAATG---GCTTTTCTTCATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTT
*
8451322 TAAC--CAAATGTAAAAAAATTCAACCTAAAATCAATTATGAGA
126 TAACTAAAAATGTAAAAAAATTCAA-CTAAAATCAATTATGAGA
* * * * * * *
8451364 TTATAAAACTATTTAAAGTGAGTAACAAGGCCTT-GAAAGGTATAGGTAACTACAAATGGACTTT
1 TTATAAAAC-ATTTAAAGCGAGTAATAAGGCTTTCG-AAGGCATGGGTGACTATAAATGGACTTT
* * * * ** * *
8451428 TCTTACCAATGCATGCCTTTTTCTT-AGCGTTT-TTGAGACAAACAATCAATTATAATCTGTTTG
64 TCTTACCAATGAATGGC-TTTTCTTCA-TGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTT
*
8451491 AACCAAAAATGTAAAAAAATGT-AACTTAAAATCAATTATGA-A
127 AACTAAAAATGTAAAAAAAT-TCAAC-TAAAATCAATTATGAGA
* * * * * * *
8451533 GTTATAAAATCATCTGAAGCGAGTAACAAGACTTTTGAAGG-ATTGGGTGACTATGAATGAACTT
1 -TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTCGAAGGCA-TGGGTGACTATAAATGGACTT
* * * * * ** ** * * *
8451597 TTCGTGCCAAT-AGATGGGTTTTGCTTTACGTTTCTTAAGACAGAC-TTACAATTATAATATATT
63 TTCTTACCAATGA-ATGGCTTTT-CTTCATGTTTCTCGAGGTAAACATT-CAATTATAATCTGTT
* * *
8451660 TTAA-TCAAAAATGCAAAAAAA--AAACTAAAATCAATTTTGAGA
125 TTAACT-AAAAATGTAAAAAAATTCAACTAAAATCAATTATGAGA
* * * * * * *
8451702 TTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAAGCTTAGGTGACTATAAGTGTACGTTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
** * * * * *
8451767 CTTATTAATAAATGGCTTTTTTTCATGTTTGCT-AAGGTAAACATTCAAGTACAATCTGTTTTAA
65 CTTACCAATGAATGGCTTTTCTTCATGTTT-CTCGAGGTAAACATTCAATTATAATCTGTTTTAA
* * *
8451831 -TCAAAAATATAAAAAAATTCAACTTAAAATGAATTGTGAGA
129 CT-AAAAATGTAAAAAAATTCAAC-TAAAATCAATTATGAGA
** * * * ** *
8451872 TTATCAAGCCATTAAAAGCGAGTAATAAGACTTTCAAAGGCATGGGCAACTATAAATGAACTTTT
1 TTAT-AAAACATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
* * * * *
8451937 CTT-CTCAATGAA-AGCTTTTGCTTTACGTTTC-CTGA-GTCAAATATTCAATTATAATCTATTT
65 CTTAC-CAATGAATGGCTTTT-CTTCATGTTTCTC-GAGGT-AAACATTCAATTATAATCTGTTT
* * * *
8451998 TCAATTGAAAGTGTAAAACAATTCAACCTAAAATCAATTATGAGA
126 T-AACTAAAAATGTAAAAAAATTCAA-CTAAAATCAATTATGAGA
* * * * * * *
8452043 TTATAAAACCATTTAAAGCAAGTAATAAGGCCTCCAAAGGAATGGGTGGCTATAAATAGACATTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGAC-TTT
* * ** *
8452108 T-TTACCAATGCATGGCTTGTTCTTCATGTTTCTTGAGACAGACATTCAATTATAATCTGTTTTA
64 TCTTACCAATGAATGGCTT-TTCTTCATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTTA
*
8452172 ACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGA
128 ACTAAAAATGTAAAAAAATTCAAC-TAAAATCAATTATGAGA
* * * *
8452214 TTATAAAACTATTTGAAGCGAGTAACAAAGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTT
1 TTATAAAAC-ATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
* * ** * * *
8452279 TTTGCCAATGAATGG-TTTTGCTTCACATTTCTTGA-GTCAGACATTCCATTATAATCTGTTTTA
65 CTTACCAATGAATGGCTTTT-CTTCATGTTTCTCGAGGT-AAACATTCAATTATAATCTGTTTTA
* * * * *
8452342 ACTAAAACTGTACAAGAATTCAATTTAAAATTAATTATGAGA
128 ACTAAAAATGTAAAAAAATTCAA-CTAAAATCAATTATGAGA
** * *
8452384 TTATAAAACCATTTAAAGTAAGTAATAAGGCTTTCGAAGACATGGATGACTATAAATGGACTTTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
* * ** * * *
8452449 CTTGCCAATAAATGGCTTTTTCTTCATGTTTCTCGAGGTTGACATTCAATTGTATTTTGTTTTGA
65 CTTACCAATGAATGGC-TTTTCTTCATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTT-A
** ** * * * * * * *
8452514 AGGAAACCTATTAAACAGTTTAACTTAAAATCAATTGTAAGA
128 ACTAAAAATGTAAAAAAATTCAAC-TAAAATCAATTATGAGA
* * *
8452556 TTATAAAATCATTTAAAGCGAATAATAAGGATTTCGAAGGCATGCGTGACTATAAATGGACTTTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
* * *
8452621 CTTATCAATGAATGG-TGTTTTTTCATGTTTCTCGAGGCAAACATTCAATTATAATCTGTTTTAA
65 CTTACCAATGAATGGCT-TTTCTTCATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTTAA
* * * *
8452685 CTAAAAATATTAAAAAATTTAACTAAAAATCAATTATCAGA
129 CTAAAAATGTAAAAAAATTCAACT-AAAATCAATTATGAGA
* * * ** * *
8452726 TTATAAAACTATGTAAAGCGAGTAATAAGGCTTTCAAAGACATTAGTGACTATCAATGGGCTTTT
1 TTATAAAAC-ATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
* * ** * * *
8452791 CTTGCCAAT-ACATGGCTTTT-TCTCTGTGTTTCT-GAGACAAACAATCAGTTATAATCTATTTT
65 CTTACCAATGA-ATGGCTTTTCT-TC-ATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTT
* * * * * * *
8452853 AGCTGAAAATGGAAAAAACTTGAATTTAAAATTAATTATGAGA
127 AACTAAAAATGTAAAAAAATTCAA-CTAAAATCAATTATGAGA
* * * *
8452896 TTATAAAACTATTTAAAGTGAGTAAT-AGTGATTTTGAAGGTATGGGTGACTATAAATAGG-CTT
1 TTATAAAAC-ATTTAAAGCGAGTAATAAG-GCTTTCGAAGGCATGGGTGACTATAAAT-GGACTT
* * * * * * * *
8452959 GTCTTTCCAATGAATGACGATTTTTTTTACG-TT-TC-AAGTAAACATTCAATTATAATATGTTT
63 TTCTTACCAATGAATG--GCTTTTCTTCATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTT
*
8453021 TAAC-CAAAATGTAAAAAAATTCAACCTAAAATCAATTATGAGA
126 TAACTAAAAATGTAAAAAAATTCAA-CTAAAATCAATTATGAGA
* * * *
8453064 TTATAAAACCATTTAAAGTGAGTAACAAGGCTTT-GAAAGGCATGGCTAACTATAAATGGACTTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTCG-AAGGCATGGGTGACTATAAATGGACTTT
* * * * * ** *
8453128 TCTTGCTAATGCAA-AGCTTTTTCTTGATGTTT-TTGAGACAAACAATCAATTATAATCTGTTTT
64 TCTTACCAATG-AATGGC-TTTTCTTCATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTT
* *
8453191 AACTAAAAATGTAAAAAAATTTAACTTAAAATCAATTATGAGG
127 AACTAAAAATGTAAAAAAATTCAAC-TAAAATCAATTATGAGA
* * * * * *
8453234 TTATAAAACTATCTAAAGTGAGTAACAAGACTTTTGAAGG-ATTGGGTGACTATAAATAGACTTT
1 TTATAAAAC-ATTTAAAGCGAGTAATAAGGCTTTCGAAGGCA-TGGGTGACTATAAATGGACTTT
* * * * * * * *
8453298 TCGTGCCAAT-AGATAGG-TTTTGCTTCACGTTTC-CTGA-G-ACAGATTTAAAATTATAATATA
64 TCTTACCAATGA-AT-GGCTTTT-CTTCATGTTTCTC-GAGGTAAACA-TT-CAATTATAATCTG
* * *
8453358 TTTTAA-TAAAAAATATAAAAAAAATT-AACCTAAAATCAATTTTAAGA
123 TTTTAACT-AAAAATGT-AAAAAAATTCAA-CTAAAATCAATTATGAGA
* * * * *
8453405 TTATAAAACTATTTAAAGTGAGTAATAAGGCTTTCGAAAGCTTGGATGACTATAAGTGGACTTTT
1 TTATAAAAC-ATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
* * ** * * * * *
8453470 CTTACTAATAAATGGCTTTTTCTTCACATTTACT-AAGGTAATCATTCAAGTACAATCTATTTTA
65 CTTACCAATGAATGGC-TTTTCTTCATGTTT-CTCGAGGTAAACATTCAATTATAATCTGTTTTA
* *
8453534 ACTAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAAA
128 ACTAAAAATGTAAAAAAATTCAAC-TAAAATCAATTATGAGA
* * * * **
8453576 TTATAAAACTATTGAAAGCGAGTAATAAGGCTTTTGAA-GTACGGGTGACTATAAATAAACTTTT
1 TTATAAAAC-ATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
* * * * *
8453640 -TTACCAATGAACGGCTTTTGCTTCATGTTTC-CTAAGTCAAACATTCAATTATAATCTATTTCA
65 CTTACCAATGAATGGCTTTT-CTTCATGTTTCTCGAGGT-AAACATTCAATTATAATCTGTTTTA
* * **
8453703 ACCAAAAATGTAAAACAATTCAACCTAAAATTGATTATGAGA
128 ACTAAAAATGTAAAAAAATTCAA-CTAAAATCAATTATGAGA
* * * * * *
8453745 TTATAAAACTATTTAAAGCAAATAATAAGGCCTTCAAAGACATGGGTGGCTATAAATGGACTTTT
1 TTATAAAAC-ATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
* * * * *
8453810 CTTACCAATGCATGGCTTTTTATTCATGTTTC-CTAAGGTAGACATTCAATTATAATCCGTTTTA
65 CTTACCAATGAATGGC-TTTTCTTCATGTTTCTC-GAGGTAAACATTCAATTATAATCTGTTTTA
* * * * *
8453874 ATTAAAAATGTAAAAACACTCAACTTAAAATCCATTATGATA
128 ACTAAAAATGTAAAAAAATTCAAC-TAAAATCAATTATGAGA
* *
8453916 TTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
* * * * * * * *
8453981 TTTGCAAATGAATGG-TTTTGCTTCATATTTC-CTAAGGCAAACATTCCATTATAATCTATTTTA
65 CTTACCAATGAATGGCTTTT-CTTCATGTTTCTC-GAGGTAAACATTCAATTATAATCTGTTTTA
* * * * *
8454044 ACCAAAACTATACAAGAATTCAACTTAAAATCAATTATGAGA
128 ACTAAAAATGTAAAAAAATTCAAC-TAAAATCAATTATGAGA
*** * * *
8454086 TTATAAAACTATTTAAAATAAATAATAAGGCTTTTGAAGGCATCGGTGACTATAAATGGACTTTT
1 TTATAAAAC-ATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
** * * *
8454151 CTTGTCAATAAATGGCTTCTTCTTCATGTTTCTCGAGGCT-AACATTCAATTATATTTTGTTTTA
65 CTTACCAATGAATGGCTT-TTCTTCATGTTTCTCGAGG-TAAACATTCAATTATAATCTGTTTTA
* * *
8454215 ACTAAAACTATAAAAAAATTCAACTTAAAATCAGTTATGAGA
128 ACTAAAAATGTAAAAAAATTCAAC-TAAAATCAATTATGAGA
* * ** * *
8454257 TTATAAAACTATTTATAGCGAGTAATAAGGCTTTCAAAGATATGAGTGACTATAAATGGATTTTT
1 TTATAAAAC-ATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
* ** * * * * *
8454322 TTTGTCAATAAATGGCTATTT-TTCATGTTTCTTGAGGCAAACATTCAATTATCATCTATTTTAA
65 CTTACCAATGAATGGCT-TTTCTTCATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTTAA
* * *
8454386 CCAAATATGTTAAAAAATTCAACTAAAAATCAATTATGAGA
129 CTAAAAATGTAAAAAAATTCAACT-AAAATCAATTATGAGA
* * * * **
8454427 TTATAAAGCCATTTAAAGCTAGTAATAAGGATTTTGAAGGCATGGGTGACTATAAATAAACTTTT
1 TTATAAA-ACATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
* * * * *
8454492 CTTACCAATGAATGGCAATTTTTTTTTACGTTTCTTGAGGTAAACATTCAATTATAATATGTTTT
65 CTTACCAATGAATGGC---TTTTCTTCATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTT
* *
8454557 AAC-CAAAATGTGAAAAAATTCAACCTAAAATCAATTATGAGA
127 AACTAAAAATGTAAAAAAATTCAA-CTAAAATCAATTATGAGA
* ** * * * * * * *******
8454599 TTATAAAAATATTTACTGC-ACGT--T-TGG-TAT-G-GGGAATAGCT-ATGCTATTCCCCCTCT
1 TTAT-AAAACATTTAAAGCGA-GTAATAAGGCTTTCGAAGGCATGGGTGA--CTATAAATGGACT
* ** * * * * * * * * * * *** * *
8454656 ATTCGCAGCCATTTATTGTACCTTTGTT--TGGTT-T-GATTGTGCAATAAAGAATAAAAAT-T-
62 TTTCTTA-CCAATGAATG-GCTTTTCTTCATGTTTCTCGA-GGT-AAACATTCAATTATAATCTG
** * * ** * * * *
8454715 CCTCAATTAAAAAT-TCCTCAATAATATCTATACCTTAAAATGGGTAAAAAGTCTTCTTTAG-
123 TTTTAACTAAAAATGT--AAAAAAAT-TC-A-A-C-TAAAA----T--CAA---TT-ATGAGA
* * *** * * * * * *
8454776 TTAT-TACCGATTCT-CCCCTTG-GT-AT-TGTCTATTCCATGTCTCAT--G-GA--ATAATTGT
1 TTATAAAAC-ATT-TAAAGC--GAGTAATAAGGCT-TTCGAAG--GCATGGGTGACTATAAATG-
* * * ** * * ** *** ** * * ** * *
8454831 GACATTTGTAATGACTAAATTACCCCTC-TCAAATTTAT-AAAATGACAACCCTGTCCA-TATAA
58 GACTTTTCTTACCAATGAATGGCTTTTCTTCATGTTTCTCGAGGT-A-AA-CAT-TCAATTAT-A
* * ** ***** * ******* ** *** ** * ****
8454893 AACATTTTTTCTCTCTTTTCCTCCTTTCCCTCTTTCTCCCTACCGCTCCTCCTCTTTTCCC
118 ATC--TGTTT-TAACTAAAAAT--GTAAAAAAATTC-AACTA-AAAT-C-AAT-TATGAGA
** * * * *** * * * *** * * ** **
8454954 TT-T--TTC-TCTCAA-C-CGT--T-TTTCTCTC--AGCCGTTCCT-CCTCT-TTTCCCACTTTT
1 TTATAAAACATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAAT-GGAC-TTT
* * * ** * * * ** * ** *
8455006 TCTCAACCACT--CTTCCTCCTTTC-CCTAT-TTCTCTCAACAGCTATTCCTCCTTTCCCTCTTT
64 TCT-TACCAATGAATGGCT--TTTCTTC-ATGTT-TCTC--GAGGTA----AACATT--CAATTA
** ** * ***** * ******* **** ** * ** *
8455067 TCTCTCTGCTGCT-CCTCCTCCTTTCCCTTTTCTCTCAACTGTCCTTCTCTCACCAGC
116 T-AATCTG-TTTTAACTAAAAATGT-AAAAAAAT-TCAACT-AAAATCAATTATGAGA
*** ** ** ** * ***** *** ** * *
8455124 TCT-T-CCTCATTT--CCCTGTTTCTCTCAGTCGCTATTCCCTTTC-TCCCTCTTTCTCTCAAT-
1 T-TATAAAACATTTAAAGC-GAGT-AATAAG--GCT-TTCGAAGGCAT--GGGTGACTATAAATG
* * * ** * * * * * * * **
8455183 TAGCTTTCTCTCAGC--TGCTCTGCCTCCTTTC--CCTTTTTCTCTCA-AT-CACTCTTCCTTTT
58 GA-CTTT-TCTTACCAATG-AATGGCT--TTTCTTCATGTTTCTC-GAGGTAAAC-ATT-C-AAT
* * ** **** ***** * *** * *
8455242 TCCCACTATTCCATGATTTAGGTTCCGCCA-GTAACGCCGCCTTTCTCATCCATGGGATAAAATA
114 T---A-TAAT-C-TGTTTTA-ACT-AAAAATGTAA----AAAAAT-TCA-AC-TAAAATCAATTA
8455306 T-A-A
164 TGAGA
* * *** * * * ** *** * ** * *
8455309 TTATAATTATAGTTTAAAATAATTATTAA--ATTAT--AA-TTATTTTTG-GTATTTA-GAAATT
1 TTATAA-AACA-TTTAAAGCGAGTAATAAGGCTT-TCGAAGGCATGGGTGACTATAAATGGACTT
** *** ** * ** ** *
8455367 TTAATAAGTAT-AAT---TTTAATT--T-TTT-TTGAAAATAAATGTT-AA-TATAATCAAGATT
63 TTCTTACCAATGAATGGCTTTTCTTCATGTTTCTCG-AGGTAAACATTCAATTATAATC-TG-TT
** **** * * *** ** * * *
8455422 ATT-TTTATCTTTTTATCACCTATTCCTTTCT-TATTCCAATCT-T-A-T
125 -TTAACTAAAAATGTA-AAAAAATT-C-AACTAAAAT-CAAT-TATGAGA
* * * * * *** *** * * **
8455467 TTCTACCAAC---CAAA-C-AGTACAATAAGTCATAATAA--CAATTCCTG-CTCT-ATTCCA-T
1 TTATA-AAACATTTAAAGCGAGT--AATAAGGCTTTCGAAGGC-ATGGGTGACTATAAATGGACT
* ** * ** ** * * * * *
8455522 TTACTATACCAAACAA-AG-TAAT-AAC-T-ATTCT--A--T--TCTATTCTACTT-TATTCTAT
62 TTTCT-TACCAATGAATGGCTTTTCTTCATGTTTCTCGAGGTAAAC-ATTC-AATTATAATCTGT
* * **** * * **** * ** *
8455575 TCCT-AC-AGAATAA-CT-ATTCTATTCTATTCCTGTCTATTCCGCGA
124 T-TTAACTA-AA-AATGTAAAAAAATTCAACTAAAATCAATTATGAGA
* * * * * * * * *
8455619 --ACCAAATGCTCTATTAAAGTGAGTAATAAGGCCTT-GAAAGGTATGAGTAACTATAAATAGAC
1 TTA-TAAA-AC-AT-TTAAAGCGAGTAATAAGGCTTTCG-AAGGCATGGGTGACTATAAATGGAC
* * * *** * *
8455681 TTTTCTTACCAATGCATGGCTTTTTCTCCAGGTTTCT-GAGACGAACAATCAATTATAACCTGTT
61 TTTTCTTACCAATGAATGGC-TTTTCTTCATGTTTCTCGAGGTAAACATTCAATTATAATCTGTT
* * * *
8455745 TTAA-TCAAAAATGTAAAAAAATTTAACTTAAAATTAATTATAAGG
125 TTAACT-AAAAATGTAAAAAAATTCAAC-TAAAATCAATTATGAGA
* * * * *
8455790 TTATAAAACTATCTAAAGCGAGTAACAAGACTTTCGAAGG-ATTGGATGACTACAAATGGACTTT
1 TTATAAAAC-ATTTAAAGCGAGTAATAAGGCTTTCGAAGGCA-TGGGTGACTATAAATGGACTTT
* * ** * * *
8455854 T-TGTGCCAAT-AGATGACTTTTGCTTCATGTTTC-CTGAGACAAACTTTCAATTATAATATATT
64 TCT-TACCAATGA-ATGGCTTTT-CTTCATGTTTCTC-GAGGTAAACATTCAATTATAATCTGTT
* * *
8455916 TTAA-TCAAAAATATAAAAAAACTTAAACTAAAATCAATTTTGAGA
125 TTAACT-AAAAATGTAAAAAAA-TTCAACTAAAATCAATTATGAGA
* * * * * * *
8455961 TTATAAAACCATTTAACGTGAGTAAAAAAGCTTTCGAAGGCTTGGGTGACTACAAATGGACATTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
*** * * * * ** *
8456026 CTTGGTACTGAATGACTTTTTCTTCACGTTTGC-CAAGGTAAACATTCAAGCACAATCTGTTTTA
65 CTTACCAATGAATGGC-TTTTCTTCATGTTT-CTCGAGGTAAACATTCAATTATAATCTGTTTT-
* *
8456090 AAC-AAAAATATAAAAAAACTCAACTTAAAATCAATTATGAGA
127 AACTAAAAATGTAAAAAAATTCAAC-TAAAATCAATTATGAGA
* * *
8456132 TTATAAAAACATTTAAAGCTAGTAATAAGGCTTTCAAAGGCATGGGTGACTATAAATGAACTTTT
1 TTAT-AAAACATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
* * * *
8456197 CTTAGCAATGAAT-GCTTTTGCTTCATATTTCAT-GA-GTCAAACATTCAATTATAATTTGTTTC
65 CTTACCAATGAATGGCTTTT-CTTCATGTTTC-TCGAGGT-AAACATTCAATTATAATCTGTTTT
* * * *
8456259 AACAAAAAATATAAAACAATTCAACCTAAAATTAATTATGAGA
127 AACTAAAAATGTAAAAAAATTCAA-CTAAAATCAATTATGAGA
* * * *
8456302 TTATAAAACCATTTAAAGCAAGTAATAAAGCCTTT-AAAGGCATGGGTGGCTATAAATGGACTTT
1 TTATAAAA-CATTTAAAGCGAGTAAT-AAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTT
* * * * * **
8456366 GTTTTACCAATGCATGGCTTTTTCTTCATGTATC-CTATGG-AAGACATTTAATTATAATCCATT
64 -TCTTACCAATGAATGGC-TTTTCTTCATGTTTCTCGA-GGTAA-ACATTCAATTATAATCTGTT
* * * * * * *
8456429 TTAGCAAAAAATATAAAAAAATTTAGCTTAAAATAAATTATTAGA
125 TTAACTAAAAATGTAAAAAAATTCAAC-TAAAATCAATTATGAGA
* * * * * *
8456474 TTACAAAACTATTTGAAGCGAGTCACAAGGCTTTCGAAGGCTTGGGTGATTATAAATGGACTTTT
1 TTATAAAAC-ATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
* * * * * * * *
8456539 TTTGCCAATGAATGG-TTTTGCTTCATATTTC-CTAAGGTAGACATTCCATTATAATATGTTCTA
65 CTTACCAATGAATGGCTTTT-CTTCATGTTTCTC-GAGGTAAACATTCAATTATAATCTGTTTTA
* * * * *
8456602 ACCAAAACTATACAAGAATTCAACTTAAAATCAATTATGAGA
128 ACTAAAAATGTAAAAAAATTCAAC-TAAAATCAATTATGAGA
* * ****
8456644 TTATAAAACCACTTAAAGCAAGTAATAAGGCTTTCGAAGGCACAAATGACTATAAATGGACTTTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
** * * * * *
8456709 CTTGTCAATAAATGGCTTATTCTTCATGTCTCTCGAGGTATACATTCAATTATATTCTATTTTAA
65 CTTACCAATGAATGGCTT-TTCTTCATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTTAA
* * * * * * *
8456774 CCAAAACTATAAGACAATTAAAATTAAAATCAATTATGAGA
129 CTAAAAATGTAAAAAAATT-CAACTAAAATCAATTATGAGA
* * *
8456815 TTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAGGTTACTAGAAATGGACTTTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
*
8456880 CTTGCCAATGAATGGCTATTT-TTCATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTTAA
65 CTTACCAATGAATGGCT-TTTCTTCATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTTAA
* * *
8456944 CTAAAAATATTAAAAAAGTCAACTAAAAATCAATTATGAGA
129 CTAAAAATGTAAAAAAATTCAACT-AAAATCAATTATGAGA
* * * * *
8456985 TTGTAAAGTCATTTAAAGCGAGTAATAAGGCCTTT-AAAGACATGGGTGACTATAAATAGACTTT
1 TTATAAA-ACATTTAAAGCGAGTAATAAGG-CTTTCGAAGGCATGGGTGACTATAAATGGACTTT
* * * * * * * *
8457049 TCTTGCCAATGCATGACTTTTTCTCCTCA--TTTCT-GAGATACACAATCAGTTATAATCTATTT
64 TCTTACCAATGAATGGC-TTTTCT--TCATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTT
** * *
8457111 TAGTTAAAAAT-T-AAAAAATTAAACTCAAAATTAATTATGAGA
126 TAACTAAAAATGTAAAAAAATTCAACT-AAAATCAATTATGAGA
* * * * * * *
8457153 TTATAAAACTAATTCAAGCGGGTAATAAAGATTTTGAAGGCATGGGTGACTATAAATAGACTTTT
1 TTATAAAAC-ATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
* * * * * * * *
8457218 CTTACCAACGAATGGTTTTTTTTTCACGTTTCTTGAGGTAAATATTCTATTATAATATGTTTTAA
65 CTTACCAATGAATGG-CTTTTCTTCATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTTAA
8457283 CT-AAAATGTAAAAAAATTCAACCTAAAATCAATTATGAGA
129 CTAAAAATGTAAAAAAATTCAA-CTAAAATCAATTATGAGA
* * * * *
8457323 TTATAAAACCTTTTAAAGTGAGTTATAAGGCCTT-GAAAGGCATGGGTAACTATAAATGGACTTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTCG-AAGGCATGGGTGACTATAAATGGACTTT
* * * ** * * *
8457387 TTTTACCAATGCATGGC-TTTCTCTCTGTGTTTCT-GAGACAGACAATCAATTATAATCTGTTTG
64 TCTTACCAATGAATGGCTTTTCT-TC-ATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTT
* * *
8457450 AA-TAAAAAATGTAAAAAAATTTAAGTTAAAATCAATTATGAGG
127 AACT-AAAAATGTAAAAAAATTCAA-CTAAAATCAATTATGAGA
* * * * * * * **
8457493 TTATAAAATCATCTAAAGTGAATAACAAGACTTTTGAAGG-ATTGGGCGACTATAAATATACTTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTCGAAGGCA-TGGGTGACTATAAATGGACTTT
* ** * * *
8457557 T-TGTACCAAT-AGATGGCTTTTGCTTCATGTTTCTTGAGACAAACTTTCAATTATAATATATTT
64 TCT-TACCAATGA-ATGGCTTTT-CTTCATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTT
* * * *
8457620 TAATTAAAAATATAAAAAAATT-AACATAAAATTAATTTTGA-A
126 TAACTAAAAATGTAAAAAAATTCAAC-TAAAATCAATTATGAGA
* ** * * * *
8457662 GTTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTAAAAGCTTGCGTGACTATAAGTGGACTTT
1 -TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTT
* * * * * * *
8457727 TTTTACTAATAAATGGCTTTTTCTTCACGTTTGCT--ATGGTAAATATTCAAGTACAATCTGTTT
64 TCTTACCAATGAATGGC-TTTTCTTCATGTTT-CTCGA-GGTAAACATTCAATTATAATCTGTTT
* * *********
8457790 TAACAAAAAATATAAAAAANNNNNNNNNNAAATCAATTATGAGA
126 TAACTAAAAATGTAAAAAA-ATTCAACTAAAATCAATTATGAGA
* * * * * *
8457834 TTATAAAACTATTGAAAACGAGTAATAAGGCTTTTGATGGCATGGGTGACAATAAATGAACTTTT
1 TTATAAAAC-ATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
* * * * * * *
8457899 CTTGCCAATGAATAGCTTTTGGTTCATATTT-TCTGA-GTCAACAATTCAATTATAATCTATTTC
65 CTTACCAATGAATGGCTTTT-CTTCATGTTTCTC-GAGGTAAAC-ATTCAATTATAATCTGTTTT
* * * *
8457962 AACCAAAAATGCAAAACAATTCAACCTAAAATTAATTATGAGA
127 AACTAAAAATGTAAAAAAATTCAA-CTAAAATCAATTATGAGA
* ** * * * * * *
8458005 TTATAAAACCATTTAAAGCAAACAATAAGGCCTTCAAAGGCATAGGTGGCTATAAATAGACTTCT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
* * * * * *
8458070 CTTACCAATGCATGGCTTTTTCTTTATGTTTC-CTGAGGCAGACATTTAATTATAATCCGTTTTA
65 CTTACCAATGAATGGC-TTTTCTTCATGTTTCTC-GAGGTAAACATTCAATTATAATCTGTTTTA
* * * *
8458134 A-TCAAAAATATAAAAAAATTCAAGTTAAAATTAATTATGCGA
128 ACT-AAAAATGTAAAAAAATTCAA-CTAAAATCAATTATGAGA
* * * * * ** *
8458176 TTATAAAACCATTTGAAGTGAGTAACAAGGCTTTCGAAGGCTTGGATGGTTATAAATCGACTTTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
* * * * *
8458241 TTTACCAATCAATGG-TTTTGCTGCATGTTTC-CTGAGGCAAACATTCCATTATAATCTGTTTTA
65 CTTACCAATGAATGGCTTTT-CTTCATGTTTCTC-GAGGTAAACATTCAATTATAATCTGTTTTA
* * * * * * *
8458304 ACCAAAACTATACAAGAACTCAACTTAAAATCAATTATGAGNN
128 ACTAAAAATGTAAAAAAATTCAAC-TAAAATCAATTATGAG-A
******** * * * * * *
8458347 NNNNNNNNCATTTAAAGCAAATAATAAGGCTTTTGAAGACATTGGTGACTATAAATAGACTTTTC
1 TTATAAAACATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTC
* * * * * * *
8458412 TTGCCAATAAATGGCTTCTTCTTCATGTTTGTTGAGGTAAATATTCAATTATATTCTATTTTAAC
66 TTACCAATGAATGGCTT-TTCTTCATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTTAAC
* *
8458477 CAAAACTGTAAAAAAATTCAACTTAAAATCAATTATGAGA
130 TAAAAATGTAAAAAAATTCAAC-TAAAATCAATTATGAGA
********************* * *
8458517 TTANNNNNNNNNNNNNNNNNNNNNNTAAGGCTTTCGAAGGTATGTGTGACTATAAATGGACTTTT
1 TTA-TAAAACATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
* * * ** * *
8458582 CTTGCCAATGAATGG-TTATTTTTCATGTTTGTTAAGGAAAACATTCAATTATAATCTATTTTAA
65 CTTACCAATGAATGGCTT-TTCTTCATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTTAA
* *
8458646 CTAAAAATGTTAAAAAATTCAATTAAAAATCAATTATGAGA
129 CTAAAAATGTAAAAAAATTCAACT-AAAATCAATTATGAGA
* * * * *
8458687 TTATAAAGCCATTTAAAGCGAGTAACAAGGCCTTT-AAAGGCATGAGTGACTATAAATAGACTTT
1 TTATAAA-ACATTTAAAGCGAGTAATAAGG-CTTTCGAAGGCATGGGTGACTATAAATGGACTTT
* * ** * * ** * *
8458751 TCTTGCCAATGCATGGCTTTTTCTTCACATTTCT-GAGGCAAACAGTCGGTTATAATCTATTGTA
64 TCTTACCAATGAATGGC-TTTTCTTCATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTTA
* * * * *
8458815 GCTGAAAATGTAAAAAAATTGAACTTCAAATTAATTATGAGA
128 ACTAAAAATGTAAAAAAATTCAAC-TAAAATCAATTATGAGA
* * ** * *
8458857 TTATAAAACCATTTAAAGCAAGTAATAAGGATTTTAAAGGCATAGGTGACTATAAATTGACTTTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
* * * * * * *
8458922 CTTGCTAATGAATGGCTATTTTTTTTACGTTTCTCAAGGTAAACATTCAATTATAATATGTTTTA
65 CTTACCAATGAATGGC--TTTTCTTCATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTTA
*
8458987 A-TGAAAATGTAAAAAAATTCAACCTAAAATCAATTATGAGA
128 ACTAAAAATGTAAAAAAATTCAA-CTAAAATCAATTATGAGA
* * *
8459028 TTATAAAACCATTT-AAGTGAGTAATAAGGCATT-GAAAGGTATGGGTGACTATAAAT-GAGCTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTCG-AAGGCATGGGTGACTATAAATGGA-CTT
* * * *** * * * *
8459090 TTCTT-CCTAATGCATGGCTTTTTCTCCATGTTT-T-TAAAAAAGACAATT-AGTTGTGATCTAT
63 TTCTTACC-AATGAATGGC-TTTTCTTCATGTTTCTCGAGGTAA-AC-ATTCAATTATAATCTGT
*
8459151 TTGAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGA
124 TTTAACTAAAAATGTAAAAAAATTCAAC-TAAAATCAATTATGAGA
* ** * * * *
8459197 TTATAAAACCATCTAAAGCGAGTAACCAGACATTCGAAGGCTTGGGTGACTATAAATGAACTTTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
* * * * * ** * * *
8459262 CATGCTAAT-AGATAGCTTTTGCTTCATGTTTC-CTAAGACAAACTTTCAATTATAATATATTTT
65 CTTACCAATGA-ATGGCTTTT-CTTCATGTTTCTC-GAGGTAAACATTCAATTATAATCTGTTTT
* * * * * *
8459325 AA-TCAAAAATATAAAAATATTTAAAGTAAAATCAATTTTGAAA
127 AACT-AAAAATGTAAAAA-AATTCAACTAAAATCAATTATGAGA
* * *
8459368 TTATAAAATTATTTAAAGTGAGTAATAAGGCTTT-GAAGGCATGGGTGACTATAAATGGATTTTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
* * * * * * * * * *
8459432 CTTATCAATGAATGGCTTTATCTTAACAT-TTCCT-AATGCAGACAATCCATTATAATTTATTTT
65 CTTACCAATGAATGGCTTT-TCTT--CATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTT
* * *
8459495 AA-TGAAAAATATAAAAGAATTCTACTTAAAATCAATTATGAGA
127 AACT-AAAAATGTAAAAAAATTCAAC-TAAAATCAATTATGAGA
* * * * * * *
8459538 TTATAAAGCCATTTAGAGCGAGTGATAAGGCTTTTGAAGGCATAGGTGACTATAAATGAATTTTT
1 TTATAAA-ACATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
* * * * * *
8459603 CTTGCCAATGAAAGGCTTTTGCTTCACGTTTCTTGA-GTCAAACATTCAATTATAATATGTTTCA
65 CTTACCAATGAATGGCTTTT-CTTCATGTTTCTCGAGGT-AAACATTCAATTATAATCTGTTTTA
*
8459667 ACTAAAAATGTAAATAAATTCAACCTAAAATCAATTATGAGA
128 ACTAAAAATGTAAAAAAATTCAA-CTAAAATCAATTATGAGA
* * * * * * * * * *
8459709 TTCTAAAACTATTTAAAGTGAGTACTAAAGCCTTCGAAGGAATGGCTG-GTCAT-AATAGACTCT
1 TTATAAAAC-ATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACT-ATAAATGGACTTT
* * * * * * *
8459772 TCTTACCAATGCATGGTTTTTTCTTTAT-TTTC-CTGAGCTAGACATTTAATTATAATCTATTTT
64 TCTTACCAATGAATGG-CTTTTCTTCATGTTTCTC-GAGGTAAACATTCAATTATAATCTGTTTT
* *
8459835 AA-TCAAAAATATAAAAAAATTCTACTTAAAATCAATTATGAGA
127 AACT-AAAAATGTAAAAAAATTCAAC-TAAAATCAATTATGAGA
* * * *
8459878 TTATAAAACTATTTGAAGCGAGTAATGAGGCTTTCGAAGACTTGGGTGACTATAAATGGACTTTT
1 TTATAAAAC-ATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
* * * * *
8459943 TTTGCCAATG-ATGG-TTTTGCTTCATGTTTC-CTAAGGTATACATTCCATTATAATCTGTTTTA
65 CTTACCAATGAATGGCTTTT-CTTCATGTTTCTC-GAGGTAAACATTCAATTATAATCTGTTTTA
* * * * *
8460005 ACTAAAATTGTACAAGAATTCAACTTCAAATTAATTATGAGA
128 ACTAAAAATGTAAAAAAATTCAAC-TAAAATCAATTATGAGA
* * *
8460047 TTATAAAATCGTTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
* * * * * * ** * * * *
8460112 CTTACCAATAAATGACTTCTTCATCCTCTTGCTTAAGCTAAACATTCAATTACATTTTGTTTTAA
65 CTTACCAATGAATGGCTT-TTCTTCATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTTAA
* * * * *
8460177 -TCAAAACTATAAAAAACTTCATCTTAAAATCAATTATGAAA
129 CT-AAAAATGTAAAAAAATTCAAC-TAAAATCAATTATGAGA
* * *
8460218 TTATAAAATCTTTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATAGACTTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTT
8460282 NNNNNNNNNN
Statistics
Matches: 7122, Mismatches: 1782, Indels: 1050
0.72 0.18 0.11
Matches are distributed among these distances:
149 1 0.00
150 6 0.00
151 4 0.00
152 7 0.00
153 1 0.00
154 13 0.00
155 1 0.00
156 22 0.00
157 19 0.00
158 19 0.00
159 21 0.00
160 7 0.00
161 1 0.00
162 15 0.00
163 14 0.00
164 21 0.00
165 9 0.00
166 17 0.00
167 81 0.01
168 367 0.05
169 738 0.10
170 2544 0.36
171 2434 0.34
172 443 0.06
173 85 0.01
174 38 0.01
175 5 0.00
176 13 0.00
177 30 0.00
178 22 0.00
179 14 0.00
180 8 0.00
181 10 0.00
182 9 0.00
183 11 0.00
184 20 0.00
185 22 0.00
186 13 0.00
187 8 0.00
188 6 0.00
189 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.35
Consensus pattern (168 bp):
TTATAAAACATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTC
TTACCAATGAATGGCTTTTCTTCATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTTAACT
AAAAATGTAAAAAAATTCAACTAAAATCAATTATGAGA
Found at i:8451559 original size:170 final size:168
Alignment explanation
Indices: 8450682--8454606 Score: 3178
Period size: 171 Copynumber: 23.0 Consensus size: 168
8450672 NNNNNNNAGG
* * * * *
8450682 TTATAAAACCATCTAAAGCGAGTAACAAGACTTTTGAAGG-ATTGGGTGACTGTAAATGAACTTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGC-TTTGAAGGCA-TGGGTGACTATAAATGGACTTT
* * * * * * * * *
8450746 TCATGCCAAT-AGATGGGTTTTGT-TCACGTTTCATAAGACAAAC-TTACAATTATAATATATTT
63 TCTTACCAATGA-ATGGCTTTT-TCTTACGTTTCTTGAGGCAAACATT-CAATTATAATCTGTTT
* * * *
8450808 TAATCAAAAATATAAAAAAAAAT-AAATCTAAAATCAATTATGAGA
125 TAACCAAAAATGT-AAAAAAATTCAACT-TAAAATCAATTATGAGA
*
8450853 TTATAAAATCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTT-GAAGGCATGGGTGACTATAAATGGACTTTT
* * * * *
8450918 CTTATCAATGAATGGCTTTTT-TCATGTTTCTCGAGGTAAACATTCAATTATAATCTGTTTTAAC
64 CTTACCAATGAATGGCTTTTTCTTACGTTTCTTGAGGCAAACATTCAATTATAATCTGTTTTAAC
* * * * * *
8450982 TAAAAATATTAAAAAATTCAA-TTAAAAATAAATTATCATA
129 CAAAAATGTAAAAAAATTCAACTT-AAAATCAATTATGAGA
** *
8451022 TTATAAAACCATTTAAAGCGAGTAATAAGGCCTTCAAAAGCATGGGTGACTATAAATGGACTTTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGG-CTTTGAAGGCATGGGTGACTATAAATGGACTTTT
*** * * * * * *
8451087 CTTTTTAATGAATGGCTTTTTCTTTACGTTTC-TGAGACAAAGAATCAGTTATAATTTATTTT-A
64 CTTACCAATGAATGGCTTTTTC-TTACGTTTCTTGAGGCAAACATTCAATTATAATCTGTTTTAA
* * * *
8451150 CCTGAAAAATGTAAAAAACTTGAATTTAAAATTAATTATGAGA
128 CC--AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGA
* *** * *
8451193 TTATAAAACCATTTAAAGTGAGTAATAGAAATTTTGAAGGTATGGGTGACTATAAATAGACTTTT
1 TTATAAAA-CATTTAAAGCGAGTAATA-AGGCTTTGAAGGCATGGGTGACTATAAATGGACTTTT
** * ** * * *
8451258 CTTACCAATGAATGATAATTTTTTTTTACGTTTCTCAAGGTAAACATTCTATTATAATATGTTTT
64 CTTACCAATGAATG---GCTTTTTCTTACGTTTCTTGAGGCAAACATTCAATTATAATCTGTTTT
*
8451323 AACC--AAATGTAAAAAAATTCAACCTAAAATCAATTATGAGA
126 AACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGA
* * * * * * *
8451364 TTATAAAACTATTTAAAGTGAGTAACAAGGCCTTGAAAGGTATAGGTAACTACAAATGGACTTTT
1 TTATAAAAC-ATTTAAAGCGAGTAATAAGGCTTTG-AAGGCATGGGTGACTATAAATGGACTTTT
* * * * *
8451429 CTTACCAATGCATGCCTTTTTCTTAGCGTTT-TTGAGACAAACAATCAATTATAATCTGTTTGAA
64 CTTACCAATGAATGGCTTTTTCTTA-CGTTTCTTGAGGCAAACATTCAATTATAATCTGTTTTAA
8451493 CCAAAAATGTAAAAAAATGT-AACTTAAAATCAATTATGA-A
128 CCAAAAATGTAAAAAAAT-TCAACTTAAAATCAATTATGAGA
* * * * * *
8451533 GTTATAAAATCATCTGAAGCGAGTAACAAGACTTTTGAAGG-ATTGGGTGACTATGAATGAACTT
1 -TTATAAAA-CATTTAAAGCGAGTAATAAGGC-TTTGAAGGCA-TGGGTGACTATAAATGGACTT
* * * * * * * * *
8451597 TTCGTGCCAAT-AGATGGGTTTTGCTTTACGTTTCTTAAGACAGAC-TTACAATTATAATATATT
62 TTCTTACCAATGA-ATGGCTTTTTC-TTACGTTTCTTGAGGCAAACATT-CAATTATAATCTGTT
* * * *
8451660 TTAATCAAAAATGCAAAAAAA--AAAC-TAAAATCAATTTTGAGA
124 TTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGA
* * * * * * *
8451702 TTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAAGCTTAGGTGACTATAAGTGTACGTTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTT-GAAGGCATGGGTGACTATAAATGGACTTTT
** * * * * * *
8451767 CTTATTAATAAATGGCTTTTT-TTCATGTTTGC-TAAGGTAAACATTCAAGTACAATCTGTTTTA
64 CTTACCAATGAATGGCTTTTTCTT-ACGTTT-CTTGAGGCAAACATTCAATTATAATCTGTTTTA
* * * *
8451830 ATCAAAAATATAAAAAAATTCAACTTAAAATGAATTGTGAGA
127 ACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGA
** * * * ** *
8451872 TTATCAAGCCATTAAAAGCGAGTAATAAGACTTTCAAAGGCATGGGCAACTATAAATGAACTTTT
1 TTAT-AAAACATTTAAAGCGAGTAATAAGGCTTT-GAAGGCATGGGTGACTATAAATGGACTTTT
* * * * * *
8451937 CTT-CTCAATGAA-AGCTTTTGCTTTACGTTTCCTGAGTCAAATATTCAATTATAATCTATTTTC
64 CTTAC-CAATGAATGGCTTTTTC-TTACGTTTCTTGAGGCAAACATTCAATTATAATCTGTTTT-
*** * * *
8452000 AATTGAAAGTGTAAAACAATTCAACCTAAAATCAATTATGAGA
126 AACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGA
* *** * * *
8452043 TTATAAAACCATTTAAAGCAAGTAATAAGGCCTCCAAAGGAATGGGTGGCTATAAATAGACATTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGG-CTTTGAAGGCATGGGTGACTATAAATGGAC-TTT
* * * * *
8452108 T-TTACCAATGCATGGCTTGTTCTTCATGTTTCTTGAGACAGACATTCAATTATAATCTGTTTTA
63 TCTTACCAATGAATGGCTTTTTCTT-ACGTTTCTTGAGGCAAACATTCAATTATAATCTGTTTTA
8452172 ACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGA
127 ACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGA
* * * *
8452214 TTATAAAACTATTTGAAGCGAGTAACAAAGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTT
1 TTATAAAAC-ATTTAAAGCGAGTAATAAGGCTTT-GAAGGCATGGGTGACTATAAATGGACTTTT
* * * * * * *
8452279 TTTGCCAATGAATGG-TTTTGCTTCACATTTCTTGAGTCAGACATTCCATTATAATCTGTTTTAA
64 CTTACCAATGAATGGCTTTTTCTT-ACGTTTCTTGAGGCAAACATTCAATTATAATCTGTTTTAA
* * * * * *
8452343 CTAAAACTGTACAAGAATTCAATTTAAAATTAATTATGAGA
128 CCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGA
** * *
8452384 TTATAAAACCATTTAAAGTAAGTAATAAGGCTTTCGAAGACATGGATGACTATAAATGGACTTTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTT-GAAGGCATGGGTGACTATAAATGGACTTTT
* * * * *** * * *
8452449 CTTGCCAATAAATGGCTTTTTCTTCATGTTTCTCGAGGTTGACATTCAATTGTATTTTGTTTTGA
64 CTTACCAATGAATGGCTTTTTCTT-ACGTTTCTTGAGGCAAACATTCAATTATAATCTGTTTT-A
** ** * * * * * * *
8452514 AGGAAACCTATTAAACAGTTTAACTTAAAATCAATTGTAAGA
127 ACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGA
* * *
8452556 TTATAAAATCATTTAAAGCGAATAATAAGGATTTCGAAGGCATGCGTGACTATAAATGGACTTTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTT-GAAGGCATGGGTGACTATAAATGGACTTTT
* * *
8452621 CTTATCAATGAATGG-TGTTTT-TTCATGTTTCTCGAGGCAAACATTCAATTATAATCTGTTTTA
64 CTTACCAATGAATGGCT-TTTTCTT-ACGTTTCTTGAGGCAAACATTCAATTATAATCTGTTTTA
* * * * * *
8452684 ACTAAAAATATTAAAAAATTTAACTAAAAATCAATTATCAGA
127 ACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGA
* * * ** * *
8452726 TTATAAAACTATGTAAAGCGAGTAATAAGGCTTTCAAAGACATTAGTGACTATCAATGGGCTTTT
1 TTATAAAAC-ATTTAAAGCGAGTAATAAGGCTTT-GAAGGCATGGGTGACTATAAATGGACTTTT
* ** * * * *
8452791 CTTGCCAAT-ACATGGCTTTTTCTCTGTGTTTC-TGAGACAAACAATCAGTTATAATCTATTTTA
64 CTTACCAATGA-ATGGCTTTTTCT-TACGTTTCTTGAGGCAAACATTCAATTATAATCTGTTTTA
* ** * * * * *
8452854 GCTGAAAATGGAAAAAACTTGAATTTAAAATTAATTATGAGA
127 ACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGA
* * *
8452896 TTATAAAACTATTTAAAGTGAGTAAT-AGTGATTTTGAAGGTATGGGTGACTATAAATAGG-CTT
1 TTATAAAAC-ATTTAAAGCGAGTAATAAG-G-CTTTGAAGGCATGGGTGACTATAAAT-GGACTT
* * * * * * *
8452959 GTCTTTCCAATGAATGACGATTTTTTTTACGTTTC---AAGTAAACATTCAATTATAATATGTTT
62 TTCTTACCAATGAATG--GCTTTTTCTTACGTTTCTTGAGGCAAACATTCAATTATAATCTGTTT
*
8453021 TAACC-AAAATGTAAAAAAATTCAACCTAAAATCAATTATGAGA
125 TAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGA
* * * *
8453064 TTATAAAACCATTTAAAGTGAGTAACAAGGCTTTGAAAGGCATGGCTAACTATAAATGGACTTTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTG-AAGGCATGGGTGACTATAAATGGACTTTT
* * * * * *
8453129 CTTGCTAATGCAA-AGCTTTTTCTTGATGTTT-TTGAGACAAACAATCAATTATAATCTGTTTTA
64 CTTACCAATG-AATGGCTTTTTCTT-ACGTTTCTTGAGGCAAACATTCAATTATAATCTGTTTTA
* * *
8453192 ACTAAAAATGTAAAAAAATTTAACTTAAAATCAATTATGAGG
127 ACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGA
* * * * *
8453234 TTATAAAACTATCTAAAGTGAGTAACAAGACTTTTGAAGG-ATTGGGTGACTATAAATAGACTTT
1 TTATAAAAC-ATTTAAAGCGAGTAATAAGGC-TTTGAAGGCA-TGGGTGACTATAAATGGACTTT
* * * * * * * * * *
8453298 TCGTGCCAAT-AGATAGG-TTTTGCTTCACGTTTCCTGAGACAGA-TTTAAAATTATAATATATT
63 TCTTACCAATGA-AT-GGCTTTTTCTT-ACGTTTCTTGAGGCAAACATT-CAATTATAATCTGTT
** * * * *
8453360 TTAATAAAAAATATAAAAAAAATT-AACCTAAAATCAATTTTAAGA
124 TTAACCAAAAATGT-AAAAAAATTCAACTTAAAATCAATTATGAGA
* * * * *
8453405 TTATAAAACTATTTAAAGTGAGTAATAAGGCTTTCGAAAGCTTGGATGACTATAAGTGGACTTTT
1 TTATAAAAC-ATTTAAAGCGAGTAATAAGGCTTT-GAAGGCATGGGTGACTATAAATGGACTTTT
* * * * * * * * *
8453470 CTTACTAATAAATGGCTTTTTCTTCACATTTAC-TAAGGTAATCATTCAAGTACAATCTATTTTA
64 CTTACCAATGAATGGCTTTTTCTT-ACGTTT-CTTGAGGCAAACATTCAATTATAATCTGTTTTA
* * *
8453534 ACTAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAAA
127 ACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGA
* * * **
8453576 TTATAAAACTATTGAAAGCGAGTAATAAGGCTTTTGAA-GTACGGGTGACTATAAATAAACTTTT
1 TTATAAAAC-ATTTAAAGCGAGTAATAAGGC-TTTGAAGGCATGGGTGACTATAAATGGACTTTT
* * * * * * * *
8453640 -TTACCAATGAACGGCTTTTGCTTCATGTTTCCTAAGTCAAACATTCAATTATAATCTATTTCAA
64 CTTACCAATGAATGGCTTTTTCTT-ACGTTTCTTGAGGCAAACATTCAATTATAATCTGTTTTAA
* * **
8453704 CCAAAAATGTAAAACAATTCAACCTAAAATTGATTATGAGA
128 CCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGA
* * ** * *
8453745 TTATAAAACTATTTAAAGCAAATAATAAGGCCTTCAAAGACATGGGTGGCTATAAATGGACTTTT
1 TTATAAAAC-ATTTAAAGCGAGTAATAAGG-CTTTGAAGGCATGGGTGACTATAAATGGACTTTT
* * * * * * * *
8453810 CTTACCAATGCATGGCTTTTTATTCATGTTTCCTAAGGTAGACATTCAATTATAATCCGTTTTAA
64 CTTACCAATGAATGGCTTTTTCTT-ACGTTTCTTGAGGCAAACATTCAATTATAATCTGTTTTAA
** * * * *
8453875 TTAAAAATGTAAAAACACTCAACTTAAAATCCATTATGATA
128 CCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGA
* *
8453916 TTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTT
1 TTATAAAA-CATTTAAAGCGAGTAATAAGGCTTT-GAAGGCATGGGTGACTATAAATGGACTTTT
* * * * ** * * * *
8453981 TTTGCAAATGAATGG-TTTTGCTTCATATTTCCTAAGGCAAACATTCCATTATAATCTATTTTAA
64 CTTACCAATGAATGGCTTTTTCTT-ACGTTTCTTGAGGCAAACATTCAATTATAATCTGTTTTAA
* * * *
8454045 CCAAAACTATACAAGAATTCAACTTAAAATCAATTATGAGA
128 CCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGA
*** * *
8454086 TTATAAAACTATTTAAAATAAATAATAAGGCTTTTGAAGGCATCGGTGACTATAAATGGACTTTT
1 TTATAAAAC-ATTTAAAGCGAGTAATAAGGC-TTTGAAGGCATGGGTGACTATAAATGGACTTTT
** * * * * * * *
8454151 CTTGTCAATAAATGGCTTCTTCTTCATGTTTCTCGAGGCTAACATTCAATTATATTTTGTTTTAA
64 CTTACCAATGAATGGCTTTTTCTT-ACGTTTCTTGAGGCAAACATTCAATTATAATCTGTTTTAA
* * * *
8454216 CTAAAACTATAAAAAAATTCAACTTAAAATCAGTTATGAGA
128 CCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGA
* * ** * *
8454257 TTATAAAACTATTTATAGCGAGTAATAAGGCTTTCAAAGATATGAGTGACTATAAATGGATTTTT
1 TTATAAAAC-ATTTAAAGCGAGTAATAAGGCTTT-GAAGGCATGGGTGACTATAAATGGACTTTT
* ** * * * * *
8454322 TTTGTCAATAAATGGCTATTTT-TCATGTTTCTTGAGGCAAACATTCAATTATCATCTATTTTAA
64 CTTACCAATGAATGGCT-TTTTCTTACGTTTCTTGAGGCAAACATTCAATTATAATCTGTTTTAA
* * *
8454386 CCAAATATGTTAAAAAATTCAACTAAAAATCAATTATGAGA
128 CCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGA
* * * **
8454427 TTATAAAGCCATTTAAAGCTAGTAATAAGGATTTTGAAGGCATGGGTGACTATAAATAAACTTTT
1 TTATAAA-ACATTTAAAGCGAGTAATAAGG-CTTTGAAGGCATGGGTGACTATAAATGGACTTTT
* * *
8454492 CTTACCAATGAATGGCAATTTTTTTTTACGTTTCTTGAGGTAAACATTCAATTATAATATGTTTT
64 CTTACCAATGAATGGC---TTTTTCTTACGTTTCTTGAGGCAAACATTCAATTATAATCTGTTTT
* *
8454557 AACC-AAAATGTGAAAAAATTCAACCTAAAATCAATTATGAGA
126 AACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGA
8454599 TTATAAAA
1 TTATAAAA
8454607 ATATTTACTG
Statistics
Matches: 3028, Mismatches: 609, Indels: 234
0.78 0.16 0.06
Matches are distributed among these distances:
166 10 0.00
167 56 0.02
168 201 0.07
169 297 0.10
170 1074 0.35
171 1088 0.36
172 226 0.07
173 48 0.02
174 25 0.01
175 3 0.00
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (168 bp):
TTATAAAACATTTAAAGCGAGTAATAAGGCTTTGAAGGCATGGGTGACTATAAATGGACTTTTCT
TACCAATGAATGGCTTTTTCTTACGTTTCTTGAGGCAAACATTCAATTATAATCTGTTTTAACCA
AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGA
Found at i:8454102 original size:341 final size:339
Alignment explanation
Indices: 8450682--8454606 Score: 3358
Period size: 341 Copynumber: 11.5 Consensus size: 339
8450672 NNNNNNNAGG
* * * * * * * * *
8450682 TTATAAAACCATCTAAAGCGAGTAACAAGACTTTTGAAGGA-TTGGGTGACTGTAAATGAACTTT
1 TTATAAAACCATTTAAAGTGAGTAATAAGGC-TTTCAAAGACATGGGTGACTATAAATGGACTTT
* * * * * * ** * *
8450746 TCATGCCAAT-AGATGG-GTTTTGTTCACGTTTCATAAGACAAAC-TTACAATTATAATATATTT
65 TCTTACCAATGA-ATGGCTTTTTCTTCATGTTTC-TGAGGTAAACATT-CAATTATAATCTGTTT
* * * *
8450808 TAA-TCAAAAATATAAAAAAAAAT-AAATCTAAAATCAATTATGAGATTATAAAATCATTTAAAG
127 TAACT-AAAAATGT-AAAAAAATTCAACT-TAAAATCAATTATGAGATTATAAAACCATTTAAAG
* * * **
8450871 TGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTATCAATGAATGGCTT
189 CGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTTTTGCCAATGAATGG-TT
* * * *
8450936 TT--TTCATGTTT-CTCGAGGTAAACATTCAATTATAATCTGTTTTAACTAAAAATATTAAAAAA
253 TTGCTTCATGTTTCCT-GAGGCAAACATTCAATTATAATCTATTTTAAC-CAAAATATAAAAAAA
* * * *
8450998 TTCAA-TTAAAAATAAATTATCATA
316 TTCAACCT-AAAATCAATTATGAGA
* *
8451022 TTATAAAACCATTTAAAGCGAGTAATAAGGCCTTCAAA-AGCATGGGTGACTATAAATGGACTTT
1 TTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGA-CATGGGTGACTATAAATGGACTTT
*** * * ** * * * * * *
8451086 TCTTTTTAATGAATGGCTTTTTCTTTACGTTTCTGAGACAAAGAATCAGTTATAATTTATTTTAC
65 TCTTACCAATGAATGGCTTTTTCTTCATGTTTCTGAGGTAAACATTCAATTATAATCTGTTTTAA
* * * * *
8451151 CTGAAAAATGTAAAAAACTTGAATTTAAAATTAATTATGAGATTATAAAACCATTTAAAGTGAGT
130 CT-AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
** * * * * *
8451216 AAT-AGAAATTTTGAAGG-TATGGGTGACTATAAATAGACTTTTCTTACCAATGAATGATAATTT
194 AATAAG-GCTTTCGAAGGCT-TGGGTGACTATAAATGGACTTTTTTTGCCAATGAATG---GTTT
** * * * * * * * *
8451279 TTTTTTACGTTT-CTCAAGGTAAACATTCTATTATAATATGTTTTAACC-AAATGTAAAAAAATT
254 TGCTTCATGTTTCCT-GAGGCAAACATTCAATTATAATCTATTTTAACCAAAATATAAAAAAATT
8451342 CAACCTAAAATCAATTATGAGA
318 CAACCTAAAATCAATTATGAGA
* * * * ** * * *
8451364 TTATAAAACTATTTAAAGTGAGTAACAAGGCCTTGAAAGGTATAGGTAACTACAAATGGACTTTT
1 TTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGACATGGGTGACTATAAATGGACTTTT
* * * * ** * *
8451429 CTTACCAATGCATGCCTTTTTCTT-AGCGTTTTTGAGACAAACAATCAATTATAATCTGTTTGAA
66 CTTACCAATGAATGGCTTTTTCTTCA-TGTTTCTGAGGTAAACATTCAATTATAATCTGTTTTAA
* * * *
8451493 CCAAAAATGTAAAAAAATGT-AACTTAAAATCAATTATGA-AGTTATAAAATCATCTGAAGCGAG
130 CTAAAAATGTAAAAAAAT-TCAACTTAAAATCAATTATGAGA-TTATAAAACCATTTAAAGCGAG
* * * * * * **
8451556 TAACAAGACTTTTGAAGGATTGGGTGACTATGAATGAACTTTTCGTGCCAAT-AGATGGGTTTTG
193 TAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTTTTGCCAATGA-AT-GGTTTTG
* * * * * * * *
8451620 CTTTACGTTTCTTAAGACAGAC-TTACAATTATAATATATTTTAATCAAAA-ATGCAAAAAAA--
256 CTTCATGTTTCCTGAGGCAAACATT-CAATTATAATCTATTTTAACCAAAATAT--AAAAAAATT
* *
8451681 -AAACTAAAATCAATTTTGAGA
318 CAACCTAAAATCAATTATGAGA
* * * * *
8451702 TTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAAG-CTTAGGTGACTATAAGTGTACGTT
1 TTATAAAACCATTTAAAGTGAGTAATAAGGCTTTC-AAAGACATGGGTGACTATAAATGGACTTT
** * * * *
8451766 TCTTATTAATAAATGGCTTTTT-TTCATGTTTGCTAAGGTAAACATTCAAGTACAATCTGTTTTA
65 TCTTACCAATGAATGGCTTTTTCTTCATGTTT-CTGAGGTAAACATTCAATTATAATCTGTTTTA
* * * * * *
8451830 A-TCAAAAATATAAAAAAATTCAACTTAAAATGAATTGTGAGATTATCAAGCCATTAAAAGCGAG
129 ACT-AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAG
* * * ** * * * *
8451894 TAATAAGACTTTCAAAGGCATGGGCAACTATAAATGAACTTTTCTT-CTCAATGAAAGCTTTTGC
193 TAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTTTTGC-CAATGAATGGTTTTGC
* * * * ** * * *
8451958 TTTACGTTTCCTGAGTCAAATATTCAATTATAATCTATTTTCAATTGAAAGTGTAAAACAATTCA
257 TTCATGTTTCCTGAGGCAAACATTCAATTATAATCTATTTT-AA-CCAAAATATAAAAAAATTCA
8452023 ACCTAAAATCAATTATGAGA
320 ACCTAAAATCAATTATGAGA
** * * * *
8452043 TTATAAAACCATTTAAAGCAAGTAATAAGGCCTCCAAAGGA-ATGGGTGGCTATAAATAGACATT
1 TTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAA-GACATGGGTGACTATAAATGGAC-TT
* * ** *
8452107 TT-TTACCAATGCATGGCTTGTTCTTCATGTTTCTTGAGACAGACATTCAATTATAATCTGTTTT
64 TTCTTACCAATGAATGGCTTTTTCTTCATGTTTC-TGAGGTAAACATTCAATTATAATCTGTTTT
* * *
8452171 AACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTTGAAGCGAG
128 AACTAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAG
* *
8452236 TAACAAAGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTTTTGCCAATGAATGGTTTTGCT
193 TAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTTTTGCCAATGAATGGTTTTGCT
** * * * * * * * * * *
8452301 TCACATTTCTTGAGTCAGACATTCCATTATAATCTGTTTTAACTAAAACTGTACAAGAATTCAAT
258 TCATGTTTCCTGAGGCAAACATTCAATTATAATCTATTTTAACCAAAA-TATAAAAAAATTCAAC
* *
8452366 TTAAAATTAATTATGAGA
322 CTAAAATCAATTATGAGA
* * *
8452384 TTATAAAACCATTTAAAGTAAGTAATAAGGCTTTCGAAGACATGGATGACTATAAATGGACTTTT
1 TTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGACATGGGTGACTATAAATGGACTTTT
* * ** * * *
8452449 CTTGCCAATAAATGGCTTTTTCTTCATGTTTCTCGAGGTTGACATTCAATTGTATTTTGTTTTGA
66 CTTACCAATGAATGGCTTTTTCTTCATGTTTCT-GAGGTAAACATTCAATTATAATCTGTTTT-A
** ** * * * * * * * * *
8452514 AGGAAACCTATTAAACAGTTTAACTTAAAATCAATTGTAAGATTATAAAATCATTTAAAGCGAAT
129 ACTAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * ** *
8452579 AATAAGGATTTCGAAGGCATGCGTGACTATAAATGGACTTTTCTTATCAATGAATGGTGTTT-TT
194 AATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTTTTGCCAATGAATGGT-TTTGCT
* * * *
8452643 TCATGTTT-CTCGAGGCAAACATTCAATTATAATCTGTTTTAACTAAAAATATTAAAAAATTTAA
258 TCATGTTTCCT-GAGGCAAACATTCAATTATAATCTATTTTAAC-CAAAATATAAAAAAATTCAA
*
8452707 -CTAAAAATCAATTATCAGA
321 CCT-AAAATCAATTATGAGA
* * * ** * *
8452726 TTATAAAACTATGTAAAGCGAGTAATAAGGCTTTCAAAGACATTAGTGACTATCAATGGGCTTTT
1 TTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGACATGGGTGACTATAAATGGACTTTT
* * ** * * *
8452791 CTTGCCAAT-ACATGGCTTTTTC-TCTGTGTTTCTGAGACAAACAATCAGTTATAATCTATTTTA
66 CTTACCAATGA-ATGGCTTTTTCTTC-ATGTTTCTGAGGTAAACATTCAATTATAATCTGTTTTA
* * * * * * * * *
8452854 GCTGAAAATGGAAAAAACTTGAATTTAAAATTAATTATGAGATTATAAAACTATTTAAAGTGAGT
129 ACTAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * *
8452919 AAT-AGTGATTTTGAAGG-TATGGGTGACTATAAATAGG-CTTGTCTTT-CCAATGAATGACGAT
194 AATAAG-GCTTTCGAAGGCT-TGGGTGACTATAAAT-GGACTT-TTTTTGCCAATGAATG--G-T
* * * * * * * *
8452980 TTT-TTTTACGTTT-C--AAGTAAACATTCAATTATAATATGTTTTAACCAAAATGTAAAAAAAT
252 TTTGCTTCATGTTTCCTGAGGCAAACATTCAATTATAATCTATTTTAACCAAAATATAAAAAAAT
8453041 TCAACCTAAAATCAATTATGAGA
317 TCAACCTAAAATCAATTATGAGA
* * * * *
8453064 TTATAAAACCATTTAAAGTGAGTAACAAGGCTTTGAAAGGCATGGCTAACTATAAATGGACTTTT
1 TTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGACATGGGTGACTATAAATGGACTTTT
* * * * * ** *
8453129 CTTGCTAATGCAA-AGCTTTTTCTTGATGTTTTTGAGACAAACAATCAATTATAATCTGTTTTAA
66 CTTACCAATG-AATGGCTTTTTCTTCATGTTTCTGAGGTAAACATTCAATTATAATCTGTTTTAA
* * * * *
8453193 CTAAAAATGTAAAAAAATTTAACTTAAAATCAATTATGAGGTTATAAAACTATCTAAAGTGAGTA
130 CTAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTA
* * * * * **
8453258 ACAAGACTTTTGAAGGATTGGGTGACTATAAATAGACTTTTCGTGCCAAT-AGATAGGTTTTGCT
195 ATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTTTTGCCAATGA-AT-GGTTTTGCT
* * * * * * **
8453322 TCACGTTTCCTGAGACAGA-TTTAAAATTATAATATATTTTAATAAAAAATATAAAAAAAATT-A
258 TCATGTTTCCTGAGGCAAACATT-CAATTATAATCTATTTTAA-CCAAAATAT-AAAAAAATTCA
* *
8453385 ACCTAAAATCAATTTTAAGA
320 ACCTAAAATCAATTATGAGA
* * * *
8453405 TTATAAAACTATTTAAAGTGAGTAATAAGGCTTTCGAAAG-CTTGGATGACTATAAGTGGACTTT
1 TTATAAAACCATTTAAAGTGAGTAATAAGGCTTTC-AAAGACATGGGTGACTATAAATGGACTTT
* * ** * * * * *
8453469 TCTTACTAATAAATGGCTTTTTCTTCACATTTACTAAGGTAATCATTCAAGTACAATCTATTTTA
65 TCTTACCAATGAATGGCTTTTTCTTCATGTTT-CTGAGGTAAACATTCAATTATAATCTGTTTTA
* * * *
8453534 ACTAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAAATTATAAAACTATTGAAAGCGAGT
129 ACTAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * ** * *
8453599 AATAAGGCTTTTGAA-G-TACGGGTGACTATAAATAAAC-TTTTTTACCAATGAACGGCTTTTGC
194 AATAAGGCTTTCGAAGGCT-TGGGTGACTATAAATGGACTTTTTTTGCCAATGAATGG-TTTTGC
* * * * *
8453661 TTCATGTTTCCTAAGTCAAACATTCAATTATAATCTATTTCAACCAAAAATGTAAAACAATTCAA
257 TTCATGTTTCCTGAGGCAAACATTCAATTATAATCTATTTTAACC-AAAATATAAAAAAATTCAA
**
8453726 CCTAAAATTGATTATGAGA
321 CCTAAAATCAATTATGAGA
* ** * * *
8453745 TTATAAAACTATTTAAAGCAAATAATAAGGCCTTCAAAGACATGGGTGGCTATAAATGGACTTTT
1 TTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGACATGGGTGACTATAAATGGACTTTT
* * * * *
8453810 CTTACCAATGCATGGCTTTTTATTCATGTTTCCTAAGGTAGACATTCAATTATAATCCGTTTTAA
66 CTTACCAATGAATGGCTTTTTCTTCATGTTT-CTGAGGTAAACATTCAATTATAATCTGTTTTAA
* * * * *
8453875 TTAAAAATGTAAAAACACTCAACTTAAAATCCATTATGATATTATAAAACCATTTAAAGCGAGTA
130 CTAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTA
* *
8453940 ACAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTTTTGCAAATGAATGGTTTTGCTTC
195 ATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTTTTGCCAATGAATGGTTTTGCTTC
* * * * * *
8454005 ATATTTCCTAAGGCAAACATTCCATTATAATCTATTTTAACCAAAACTATACAAGAATTCAACTT
260 ATGTTTCCTGAGGCAAACATTCAATTATAATCTATTTTAACCAAAA-TATAAAAAAATTCAACCT
8454070 AAAATCAATTATGAGA
324 AAAATCAATTATGAGA
* * * * ** * *
8454086 TTATAAAACTATTTAAAATAAATAATAAGGCTTTTGAAGGCATCGGTGACTATAAATGGACTTTT
1 TTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGACATGGGTGACTATAAATGGACTTTT
** * * * *
8454151 CTTGTCAATAAATGGCTTCTTCTTCATGTTTCTCGAGGCT-AACATTCAATTATATTTTGTTTTA
66 CTTACCAATGAATGGCTTTTTCTTCATGTTTCT-GAGG-TAAACATTCAATTATAATCTGTTTTA
* * * * *
8454215 ACTAAAACTATAAAAAAATTCAACTTAAAATCAGTTATGAGATTATAAAACTATTTATAGCGAGT
129 ACTAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * * *
8454280 AATAAGGCTTTC-AAAGATATGAGTGACTATAAATGGATTTTTTTTGTCAATAAATGGCTATTT-
194 AATAAGGCTTTCGAAGGCT-TGGGTGACTATAAATGGACTTTTTTTGCCAATGAATGG-T-TTTG
* * * *
8454343 -TTCATGTTTCTTGAGGCAAACATTCAATTATCATCTATTTTAACCAAATATGTTAAAAAATTCA
256 CTTCATGTTTCCTGAGGCAAACATTCAATTATAATCTATTTTAACCAAA-ATATAAAAAAATTCA
8454407 A-CTAAAAATCAATTATGAGA
320 ACCT-AAAATCAATTATGAGA
* * ** * **
8454427 TTATAAAGCCATTTAAAGCT-AGTAATAAGGATTTTGAAGGCATGGGTGACTATAAATAAACTTT
1 TTATAAAACCATTTAAAG-TGAGTAATAAGGCTTTCAAAGACATGGGTGACTATAAATGGACTTT
* * * *
8454491 TCTTACCAATGAATGGCAATTTTTTTTTACGTTTCTTGAGGTAAACATTCAATTATAATATGTTT
65 TCTTACCAATGAATGGC--TTTTTCTTCATGTTTC-TGAGGTAAACATTCAATTATAATCTGTTT
* * *
8454556 TAAC-CAAAATGTGAAAAAATTCAACCTAAAATCAATTATGAGATTATAAAA
127 TAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAA
8454607 ATATTTACTG
Statistics
Matches: 2930, Mismatches: 544, Indels: 220
0.79 0.15 0.06
Matches are distributed among these distances:
336 4 0.00
337 60 0.02
338 440 0.15
339 108 0.04
340 557 0.19
341 923 0.32
342 745 0.25
343 53 0.02
344 40 0.01
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (339 bp):
TTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGACATGGGTGACTATAAATGGACTTTT
CTTACCAATGAATGGCTTTTTCTTCATGTTTCTGAGGTAAACATTCAATTATAATCTGTTTTAAC
TAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAA
TAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTTTTGCCAATGAATGGTTTTGCTTCA
TGTTTCCTGAGGCAAACATTCAATTATAATCTATTTTAACCAAAATATAAAAAAATTCAACCTAA
AATCAATTATGAGA
Found at i:8454727 original size:15 final size:15
Alignment explanation
Indices: 8454707--8454736 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
8454697 CAATAAAGAA
8454707 TAAAAATTCCTCAAT
1 TAAAAATTCCTCAAT
8454722 TAAAAATTCCTCAAT
1 TAAAAATTCCTCAAT
8454737 AATATCTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (15 bp):
TAAAAATTCCTCAAT
Found at i:8454972 original size:15 final size:15
Alignment explanation
Indices: 8454954--8454985 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8454944 CTCTTTTCCC
8454954 TTTTTCTCTCAACCG
1 TTTTTCTCTCAACCG
*
8454969 TTTTTCTCTCAGCCG
1 TTTTTCTCTCAACCG
8454984 TT
1 TT
8454986 CCTCCTCTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.09, C:0.31, G:0.09, T:0.50
Consensus pattern (15 bp):
TTTTTCTCTCAACCG
Found at i:8454975 original size:46 final size:46
Alignment explanation
Indices: 8454925--8455013 Score: 119
Period size: 46 Copynumber: 1.9 Consensus size: 46
8454915 CCTTTCCCTC
*
8454925 TTTCTCCCTA-CCGCTCCTCCTCTTTTCCC-TTTTTCTCTCAACCGTT
1 TTTCTCCC-AGCCGCTCCTCCTCTTTTCCCACTTTT-TCTCAACCGTT
* *
8454971 TTTCTCTCAGCCGTTCCTCCTCTTTTCCCACTTTTTCTCAACC
1 TTTCTCCCAGCCGCTCCTCCTCTTTTCCCACTTTTTCTCAACC
8455014 ACTCTTCCTC
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
45 1 0.03
46 33 0.87
47 4 0.11
ACGTcount: A:0.08, C:0.43, G:0.04, T:0.45
Consensus pattern (46 bp):
TTTCTCCCAGCCGCTCCTCCTCTTTTCCCACTTTTTCTCAACCGTT
Found at i:8455086 original size:32 final size:32
Alignment explanation
Indices: 8454970--8455105 Score: 127
Period size: 31 Copynumber: 4.4 Consensus size: 32
8454960 TCTCAACCGT
* * * *
8454970 TTTTCTCTCAGCCGTTCCTCCTCTTTTCCCAC
1 TTTTCTCTCAACCGCTCCTCCTCCTTTCCCTC
* *
8455002 TTTT-TCTCAACCACTCTTCCTCCTTTCCCT-
1 TTTTCTCTCAACCGCTCCTCCTCCTTTCCCTC
* * **
8455032 ATTTCTCTCAACAGCTATTCCTCCTTTCCCTC
1 TTTTCTCTCAACCGCTCCTCCTCCTTTCCCTC
** *
8455064 TTTTCTCTCTGCTGCTCCTCCTCCTTT-CC-C
1 TTTTCTCTCAACCGCTCCTCCTCCTTTCCCTC
8455094 TTTTCTCTCAAC
1 TTTTCTCTCAAC
8455106 TGTCCTTCTC
Statistics
Matches: 84, Mismatches: 18, Indels: 6
0.78 0.17 0.06
Matches are distributed among these distances:
30 14 0.17
31 45 0.54
32 25 0.30
ACGTcount: A:0.09, C:0.43, G:0.04, T:0.45
Consensus pattern (32 bp):
TTTTCTCTCAACCGCTCCTCCTCCTTTCCCTC
Found at i:8455117 original size:77 final size:77
Alignment explanation
Indices: 8455034--8455226 Score: 205
Period size: 77 Copynumber: 2.5 Consensus size: 77
8455024 CTTTCCCTAT
* * *
8455034 TTCTCTCAACAGCTATTCCTCCTTTCCCTCTTTTCTCTCTG-CTGCTCCTCCTCCTT-TCCCT-T
1 TTCTCTCAACAGCTCTTCCTCCTTTCCCT-TTTTCTCTCAGTC-GCTACTCC-CCTTCTCCCTCT
8455096 TTCTCTCAACT-GTCC
63 TTCTCTCAACTAG-CC
* * * * *
8455111 TTCTCTCACCAGCTCTTCCTCATTTCCCTGTTTCTCTCAGTCGCTATTCCCTTTCTCCCTCTTTC
1 TTCTCTCAACAGCTCTTCCTCCTTTCCCTTTTTCTCTCAGTCGCTACTCCCCTTCTCCCTCTTTC
* *
8455176 TCTCAATTAGCT
66 TCTCAACTAGCC
* * *
8455188 TTCTCTCAGCTGCTCTGCCTCCTTTCCCTTTTTCTCTCA
1 TTCTCTCAACAGCTCTTCCTCCTTTCCCTTTTTCTCTCA
8455227 ATCACTCTTC
Statistics
Matches: 97, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
75 3 0.03
76 20 0.21
77 73 0.75
78 1 0.01
ACGTcount: A:0.08, C:0.41, G:0.06, T:0.45
Consensus pattern (77 bp):
TTCTCTCAACAGCTCTTCCTCCTTTCCCTTTTTCTCTCAGTCGCTACTCCCCTTCTCCCTCTTTC
TCTCAACTAGCC
Found at i:8456303 original size:341 final size:338
Alignment explanation
Indices: 8455632--8460274 Score: 3687
Period size: 341 Copynumber: 13.6 Consensus size: 338
8455622 AAATGCTCTA
* * * * * *
8455632 TTAAAGTGAGTAATAAGGCCTTGAAAGGTATGAGTAACTATAAATAGACTTTTCTTACCAATGCA
1 TTAAAGCGAGTAATAAGGCTTTG-AAGGCATGGGTGACTATAAATGGACTTTTCTTACCAATGCA
* * *** * * * *
8455697 TGGCTTTTTCTCCAGGTTTCTGAGACGAACAATCAATTATAACCTGTTTTAATCAAAAATGTAAA
65 TGGCTTTTTCTTCACGTTTCTGAGGTAAACATTCAATTATAATCTATTTTAATCAAAAATATAAA
* * * * * * *
8455762 AAAATTTAACTTAAAATTAATTATAAGGTTAT-AAAACTATCTAAAGCGAGTAACAAGACTTTCG
130 AAAATTCAACTTAAAATCAATTATGAGATTATAAAAAC-ATTTAAAGCGAGTAATAAGGCTTTCG
* * *
8455826 AAGG-ATTGGATGACTACAAATGGACTTTT-TGTGCCAAT-AGATGACTTTTGCTTCATGTTTCC
194 AAGGCA-TGGGTGACTATAAATGAACTTTTCT-TGCCAATGA-ATG-CTTTTGCTTCATGTTTCC
* * * *
8455888 TGAGACAAACTTTCAATTATAATATATTTTAA-TCAAAAATATAAAAAAACTT-AAACTAAAATC
255 TGAGTCAAACATTCAATTATAATATGTTTTAACT-AAAAATAT-AAAAAA-TTCAACCTAAAATC
*
8455951 AATTTTGAGATTATAAAACCAT
317 AATTATGAGATTATAAAACCAT
* * * * * * * *** * *
8455973 TTAACGTGAGTAAAAAAGCTTTCGAAGGCTTGGGTGACTACAAATGGACATTTCTTGGTACTGAA
1 TTAAAGCGAGTAATAAGGCTTT-GAAGGCATGGGTGACTATAAATGGACTTTTCTTACCAATGCA
* ** ** * * *
8456038 TGACTTTTTCTTCACGTTTGCCAAGGTAAACATTCAAGCACAATCTGTTTTAAACAAAAATATAA
65 TGGCTTTTTCTTCACGTTT-CTGAGGTAAACATTCAATTATAATCTATTTTAATCAAAAATATAA
* * *
8456103 AAAAACTCAACTTAAAATCAATTATGAGATTATAAAAACATTTAAAGCTAGTAATAAGGCTTTCA
129 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAAACATTTAAAGCGAGTAATAAGGCTTTCG
* *
8456168 AAGGCATGGGTGACTATAAATGAACTTTTCTTAG-CAATGAATGCTTTTGCTTCATATTTCATGA
194 AAGGCATGGGTGACTATAAATGAACTTTTCTT-GCCAATGAATGCTTTTGCTTCATGTTTCCTGA
* * * *
8456232 GTCAAACATTCAATTATAATTTGTTTCAACAAAAAATATAAAACAATTCAACCTAAAATTAATTA
258 GTCAAACATTCAATTATAATATGTTTTAACTAAAAATATAAAA-AATTCAACCTAAAATCAATTA
8456297 TGAGATTATAAAACCAT
322 TGAGATTATAAAACCAT
* * * * *
8456314 TTAAAGCAAGTAATAAAGCCTTTAAAGGCATGGGTGGCTATAAATGGACTTTGTTTTACCAATGC
1 TTAAAGCGAGTAAT-AAGGCTTTGAAGGCATGGGTGACTATAAATGGACTTT-TCTTACCAATGC
* * * * *
8456379 ATGGCTTTTTCTTCATGTATCCT-ATGG-AAGACATTTAATTATAATCCATTTT-AGCAAAAAAT
64 ATGGCTTTTTCTTCACGT-TTCTGA-GGTAA-ACATTCAATTATAATCTATTTTAATC-AAAAAT
* * * * * * * *
8456441 ATAAAAAAATTTAGCTTAAAATAAATTATTAGATTA-CAAAACTATTTGAAGCGAGTCACAAGGC
125 ATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAAC-ATTTAAAGCGAGTAATAAGGC
* * * * * *
8456505 TTTCGAAGGCTTGGGTGATTATAAATGGACTTTTTTTGCCAATGAATGGTTTTGCTTCATATTTC
189 TTTCGAAGGCATGGGTGACTATAAATGAACTTTTCTTGCCAATGAATGCTTTTGCTTCATGTTTC
* * * * * * * *
8456570 CTAAGGT-AGACATTCCATTATAATATGTTCTAACCAAAACTATACAAGAATTCAACTTAAAATC
254 CTGA-GTCAAACATTCAATTATAATATGTTTTAACTAAAAATATA-AAAAATTCAACCTAAAATC
*
8456634 AATTATGAGATTATAAAACCAC
317 AATTATGAGATTATAAAACCAT
* **** ** **
8456656 TTAAAGCAAGTAATAAGGCTTTCGAAGGCACAAATGACTATAAATGGACTTTTCTTGTCAATAAA
1 TTAAAGCGAGTAATAAGGCTTT-GAAGGCATGGGTGACTATAAATGGACTTTTCTTACCAATGCA
* * * * * * *
8456721 TGGCTTATTCTTCATGTCTCTCGAGGTATACATTCAATTATATTCTATTTTAACCAAAACTATAA
65 TGGCTTTTTCTTCACGTTTCT-GAGGTAAACATTCAATTATAATCTATTTTAATCAAAAATATAA
* * * * *
8456786 GACAATTAAAATTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCG
129 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAAACATTTAAAGCGAGTAATAAGGCTTTCG
* * * *
8456851 AAGGCATAGGTTACTAGAAATGGACTTTTCTTGCCAATGAATGGCTATTT--TTCATGTTT-CTC
194 AAGGCATGGGTGACTATAAATGAACTTTTCTTGCCAATGAAT-GCT-TTTGCTTCATGTTTCCT-
* *
8456913 GAGGT-AAACATTCAATTATAATCTGTTTTAACTAAAAATATTAAAAAAGTCAA-CTAAAAATCA
256 GA-GTCAAACATTCAATTATAATATGTTTTAACTAAAAATA-TAAAAAATTCAACCT-AAAATCA
* **
8456976 ATTATGAGATTGTAAAGTCAT
318 ATTATGAGATTATAAAACCAT
* * * *
8456997 TTAAAGCGAGTAATAAGGCCTTTAAAGACATGGGTGACTATAAATAGACTTTTCTTGCCAATGCA
1 TTAAAGCGAGTAATAAGG-CTTTGAAGGCATGGGTGACTATAAATGGACTTTTCTTACCAATGCA
* * * * * * * * * *
8457062 TGACTTTTTCTCCTCATTTCTGAGATACACAATCAGTTATAATCTATTTTAGTTAAAAAT-T-AA
65 TGGCTTTTTCTTCACGTTTCTGAGGTAAACATTCAATTATAATCTATTTTAATCAAAAATATAAA
* * * * * * * * *
8457125 AAAATTAAACTCAAAATTAATTATGAGATTAT-AAAACTAATTCAAGCGGGTAATAAAGATTTTG
130 AAAATTCAACTTAAAATCAATTATGAGATTATAAAAAC-ATTTAAAGCGAGTAATAAGGCTTTCG
* * * ** * *
8457189 AAGGCATGGGTGACTATAAAT-AGACTTTTCTTACCAACGAATGGTTTTTTTTTCACGTTTCTTG
194 AAGGCATGGGTGACTATAAATGA-ACTTTTCTTGCCAATGAAT-GCTTTTGCTTCATGTTTCCTG
* * *
8457253 AGGT-AAATATTCTATTATAATATGTTTTAACT-AAAATGTAAAAAAATTCAACCTAAAATCAAT
257 A-GTCAAACATTCAATTATAATATGTTTTAACTAAAAATAT-AAAAAATTCAACCTAAAATCAAT
*
8457316 TATGAGATTATAAAACCTT
320 TATGAGATTATAAAACCAT
* * * * *
8457335 TTAAAGTGAGTTATAAGGCCTTGAAAGGCATGGGTAACTATAAATGGACTTTTTTTACCAATGCA
1 TTAAAGCGAGTAATAAGGCTTTG-AAGGCATGGGTGACTATAAATGGACTTTTCTTACCAATGCA
* ** ** * * * * * *
8457400 TGGCTTTCTC-TCTGTGTTTCTGAGACAGACAATCAATTATAATCTGTTTGAATAAAAAATGTAA
65 TGGCTTTTTCTTC-ACGTTTCTGAGGTAAACATTCAATTATAATCTATTTTAATCAAAAATATAA
* * * * * * * * * *
8457464 AAAAATTTAAGTTAAAATCAATTATGAGGTTATAAAATCATCTAAAGTGAATAACAAGACTTTTG
129 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAAACATTTAAAGCGAGTAATAAGGCTTTCG
* *
8457529 AAGG-ATTGGGCGACTATAAAT-ATACTTTT-TGTACCAAT-AGATGGCTTTTGCTTCATGTTTC
194 AAGGCA-TGGGTGACTATAAATGA-ACTTTTCT-TGCCAATGA-AT-GCTTTTGCTTCATGTTTC
* * * * * * *
8457590 TTGAGACAAACTTTCAATTATAATATATTTTAATTAAAAATATAAAAAAATT-AACATAAAATTA
254 CTGAGTCAAACATTCAATTATAATATGTTTTAACTAAAAATAT-AAAAAATTCAACCTAAAATCA
*
8457654 ATTTTGA-AGTTATAAAACCAT
318 ATTATGAGA-TTATAAAACCAT
* * * * * * * * **
8457675 TTAAAGTGAGTAATAAGGCTTTTAAAAGCTTGCGTGACTATAAGTGGACTTTTTTTACTAATAAA
1 TTAAAGCGAGTAATAAGGC-TTTGAAGGCATGGGTGACTATAAATGGACTTTTCTTACCAATGCA
* * * *
8457740 TGGCTTTTTCTTCACGTTTGCT-ATGGTAAATATTCAAGTACAATCTGTTTTAA-CAAAAAATAT
65 TGGCTTTTTCTTCACGTTT-CTGA-GGTAAACATTCAATTATAATCTATTTTAATC-AAAAATAT
********** * *
8457803 AAAAAANNNNNNNNNNAAATCAATTATGAGATTAT-AAAACTATTGAAAACGAGTAATAAGGCTT
127 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAAC-ATTTAAAGCGAGTAATAAGGCTT
* * * * * *
8457867 TTGATGGCATGGGTGACAATAAATGAACTTTTCTTGCCAATGAATAGCTTTTGGTTCATATTTTC
191 TCGAAGGCATGGGTGACTATAAATGAACTTTTCTTGCCAATGAAT-GCTTTTGCTTCATGTTTCC
* * * * ** *
8457932 TGAGTC-AACAATTCAATTATAATCTATTTCAACCAAAAATGCAAAACAATTCAACCTAAAATTA
255 TGAGTCAAAC-ATTCAATTATAATATGTTTTAACTAAAAATATAAAA-AATTCAACCTAAAATCA
8457996 ATTATGAGATTATAAAACCAT
318 ATTATGAGATTATAAAACCAT
* ** ** * * * *
8458017 TTAAAGCAAACAATAAGGCCTTCAAAGGCATAGGTGGCTATAAATAGACTTCTCTTACCAATGCA
1 TTAAAGCGAGTAATAAGG-CTTTGAAGGCATGGGTGACTATAAATGGACTTTTCTTACCAATGCA
* * * * * **
8458082 TGGCTTTTTCTTTATGTTTCCTGAGGCAGACATTTAATTATAATCCGTTTTAATCAAAAATATAA
65 TGGCTTTTTCTTCACGTTT-CTGAGGTAAACATTCAATTATAATCTATTTTAATCAAAAATATAA
* * * * * * *
8458147 AAAAATTCAAGTTAAAATTAATTATGCGATTATAAAACCATTTGAAGTGAGTAACAAGGCTTTCG
129 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAAACATTTAAAGCGAGTAATAAGGCTTTCG
* * ** * * * * *
8458212 AAGGCTTGGATGGTTATAAATCG-ACTTTTTTTACCAATCAATGGTTTTGCTGCATGTTTCCTGA
194 AAGGCATGGGTGACTATAAAT-GAACTTTTCTTGCCAATGAATGCTTTTGCTTCATGTTTCCTGA
* * * * * * * *
8458276 GGCAAACATTCCATTATAATCTGTTTTAACCAAAACTATACAAGAACTCAACTTAAAATCAATTA
258 GTCAAACATTCAATTATAATATGTTTTAACTAAAAATATA-AAAAATTCAACCTAAAATCAATTA
**********
8458341 TGAGNNNNNNNNNNCAT
322 TGAGATTATAAAACCAT
* * * * * * **
8458358 TTAAAGCAAATAATAAGGCTTTTGAAGACATTGGTGACTATAAATAGACTTTTCTTGCCAATAAA
1 TTAAAGCGAGTAATAAGGC-TTTGAAGGCATGGGTGACTATAAATGGACTTTTCTTACCAATGCA
* * * * * * * *
8458423 TGGCTTCTTCTTCATGTTTGTTGAGGTAAATATTCAATTATATTCTATTTTAACCAAAACTGTAA
65 TGGCTTTTTCTTCACGTTT-CTGAGGTAAACATTCAATTATAATCTATTTTAATCAAAAATATAA
**********************
8458488 AAAAATTCAACTTAAAATCAATTATGAGATTANNNNNNNNNNNNNNNNNNNNNNTAAGGCTTTCG
129 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAAACATTTAAAGCGAGTAATAAGGCTTTCG
* * * * * ** *
8458553 AAGGTATGTGTGACTATAAATGGACTTTTCTTGCCAATGAATGGTTATT-TTTCATGTTTGTTAA
194 AAGGCATGGGTGACTATAAATGAACTTTTCTTGCCAATGAATGCTT-TTGCTTCATGTTTCCTGA
** * * * *
8458617 GGAAAACATTCAATTATAATCTATTTTAACTAAAAATGTTAAAAAATTCAA-TTAAAAATCAATT
258 GTCAAACATTCAATTATAATATGTTTTAACTAAAAAT-ATAAAAAATTCAACCT-AAAATCAATT
*
8458681 ATGAGATTATAAAGCCAT
321 ATGAGATTATAAAACCAT
* * * * *
8458699 TTAAAGCGAGTAACAAGGCCTTTAAAGGCATGAGTGACTATAAATAGACTTTTCTTGCCAATGCA
1 TTAAAGCGAGTAATAAGG-CTTTGAAGGCATGGGTGACTATAAATGGACTTTTCTTACCAATGCA
* * * ** * * * *
8458764 TGGCTTTTTCTTCACATTTCTGAGGCAAACAGTCGGTTATAATCTATTGT-AGCTGAAAATGTAA
65 TGGCTTTTTCTTCACGTTTCTGAGGTAAACATTCAATTATAATCTATTTTAATC-AAAAATATAA
* * * * * * **
8458828 AAAAATTGAACTTCAAATTAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGATTTTA
129 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAAACATTTAAAGCGAGTAATAAGGCTTTCG
* * ** * *
8458893 AAGGCATAGGTGACTATAAATTG-ACTTTTCTTGCTAATGAATGGCTATTTTTTTTACGTTT-CT
194 AAGGCATGGGTGACTATAAA-TGAACTTTTCTTGCCAATGAAT-GCT-TTTGCTTCATGTTTCCT
* * *
8458956 CAAGGT-AAACATTCAATTATAATATGTTTTAA-TGAAAATGTAAAAAAATTCAACCTAAAATCA
256 -GA-GTCAAACATTCAATTATAATATGTTTTAACTAAAAATAT-AAAAAATTCAACCTAAAATCA
8459019 ATTATGAGATTATAAAACCAT
318 ATTATGAGATTATAAAACCAT
* * *
8459040 TT-AAGTGAGTAATAAGGCATTGAAAGGTATGGGTGACTATAAAT-GAGCTTTTCTT-CCTAATG
1 TTAAAGCGAGTAATAAGGCTTTG-AAGGCATGGGTGACTATAAATGGA-CTTTTCTTACC-AATG
* * * *** * * * *
8459102 CATGGCTTTTTCTCCATGTTT-TTAAAAAAGACAATT-AGTTGTGATCTATTTGAA-CTAAAAAT
63 CATGGCTTTTTCTTCACGTTTCTGAGGTAA-AC-ATTCAATTATAATCTATTTTAATC-AAAAAT
* * * ** * *
8459164 GTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATCTAAAGCGAGTAACCAGACA
125 ATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAACATTTAAAGCGAGTAATAAGGCT
* * *
8459229 TTCGAAGGCTTGGGTGACTATAAATGAACTTTTCATGCTAAT-AGATAGCTTTTGCTTCATGTTT
190 TTCGAAGGCATGGGTGACTATAAATGAACTTTTCTTGCCAATGA-AT-GCTTTTGCTTCATGTTT
* * * * * **
8459293 CCTAAGACAAACTTTCAATTATAATATATTTTAA-TCAAAAATATAAAAATATTTAAAGTAAAAT
253 CCTGAGTCAAACATTCAATTATAATATGTTTTAACT-AAAAATATAAAAA-ATTCAACCTAAAAT
* * **
8459357 CAATTTTGAAATTATAAAATTAT
316 CAATTATGAGATTATAAAACCAT
* * * *
8459380 TTAAAGTGAGTAATAAGGCTTTGAAGGCATGGGTGACTATAAATGGATTTTTCTTATCAATGAAT
1 TTAAAGCGAGTAATAAGGCTTTGAAGGCATGGGTGACTATAAATGGACTTTTCTTACCAATGCAT
* * * * * * * * * * *
8459445 GGCTTTATCTTAACATTTCCTAATGCAGACAATCCATTATAATTTATTTTAATGAAAAATATAAA
66 GGCTTTTTCTTCACGTTT-CTGAGGTAAACATTCAATTATAATCTATTTTAATCAAAAATATAAA
* * ** * * *
8459510 AGAATTCTACTTAAAATCAATTATGAGATTATAAAGCCATTTAGAGCGAGTGATAAGGCTTTTGA
130 AAAATTCAACTTAAAATCAATTATGAGATTATAAAAACATTTAAAGCGAGTAATAAGGCTTTCGA
* * * * *
8459575 AGGCATAGGTGACTATAAATGAATTTTTCTTGCCAATGAAAGGCTTTTGCTTCACGTTTCTTGAG
195 AGGCATGGGTGACTATAAATGAACTTTTCTTGCCAATG-AATGCTTTTGCTTCATGTTTCCTGAG
* *
8459640 TCAAACATTCAATTATAATATGTTTCAACTAAAAATGTAAATAAATTCAACCTAAAATCAATTAT
259 TCAAACATTCAATTATAATATGTTTTAACTAAAAATATAAA-AAATTCAACCTAAAATCAATTAT
* *
8459705 GAGATTCTAAAACTAT
323 GAGATTATAAAACCAT
* * * * * * * * *
8459721 TTAAAGTGAGTACTAAAGCCTTCGAAGGAATGGCTG-GTCAT-AATAGACTCTTCTTACCAATGC
1 TTAAAGCGAGTAAT-AAGGCTTTGAAGGCATGGGTGACT-ATAAATGGACTTTTCTTACCAATGC
* * * * * *
8459784 ATGGTTTTTTCTTTA-TTTTCCTGAGCTAGACATTTAATTATAATCTATTTTAATCAAAAATATA
64 ATGGCTTTTTCTTCACGTTT-CTGAGGTAAACATTCAATTATAATCTATTTTAATCAAAAATATA
* * *
8459848 AAAAAATTCTACTTAAAATCAATTATGAGATTAT-AAAACTATTTGAAGCGAGTAATGAGGCTTT
128 AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAAC-ATTTAAAGCGAGTAATAAGGCTTT
* * * * * *
8459912 CGAAGACTTGGGTGACTATAAATGGACTTTTTTTGCCAATG-ATGGTTTTGCTTCATGTTTCCTA
192 CGAAGGCATGGGTGACTATAAATGAACTTTTCTTGCCAATGAATGCTTTTGCTTCATGTTTCCTG
* * * * * * * * *
8459976 AGGT-ATACATTCCATTATAATCTGTTTTAACTAAAATTGTACAAGAATTCAACTTCAAATTAAT
257 A-GTCAAACATTCAATTATAATATGTTTTAACTAAAAATATA-AAAAATTCAACCTAAAATCAAT
* *
8460040 TATGAGATTATAAAATCGT
320 TATGAGATTATAAAACCAT
* **
8460059 TTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTTTCTTACCAATAAA
1 TTAAAGCGAGTAATAAGGC-TTTGAAGGCATGGGTGACTATAAATGGACTTTTCTTACCAATGCA
* * * * * * * * * *
8460124 TGACTTCTTCATC-C-TCTTGCTTAAGCTAAACATTCAATTACATTTTGTTTTAATCAAAACTAT
65 TGGCTTTTTCTTCACGT-TT-C-TGAGGTAAACATTCAATTATAATCTATTTTAATCAAAAATAT
* * * * * *
8460187 AAAAAACTTCATCTTAAAATCAATTATGAAATTATAAAATCTTTTAAAGTGAGTAATAAGGCTTT
127 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAACATTTAAAGCGAGTAATAAGGCTTT
8460252 CGAAGGCATGGGTGACTATAAAT
192 CGAAGGCATGGGTGACTATAAAT
8460275 AGACTTTNNN
Statistics
Matches: 3409, Mismatches: 772, Indels: 243
0.77 0.17 0.05
Matches are distributed among these distances:
337 16 0.00
338 333 0.10
339 143 0.04
340 869 0.25
341 1353 0.40
342 667 0.20
343 28 0.01
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (338 bp):
TTAAAGCGAGTAATAAGGCTTTGAAGGCATGGGTGACTATAAATGGACTTTTCTTACCAATGCAT
GGCTTTTTCTTCACGTTTCTGAGGTAAACATTCAATTATAATCTATTTTAATCAAAAATATAAAA
AAATTCAACTTAAAATCAATTATGAGATTATAAAAACATTTAAAGCGAGTAATAAGGCTTTCGAA
GGCATGGGTGACTATAAATGAACTTTTCTTGCCAATGAATGCTTTTGCTTCATGTTTCCTGAGTC
AAACATTCAATTATAATATGTTTTAACTAAAAATATAAAAAATTCAACCTAAAATCAATTATGAG
ATTATAAAACCAT
Found at i:8461198 original size:171 final size:170
Alignment explanation
Indices: 8460617--8461204 Score: 535
Period size: 171 Copynumber: 3.5 Consensus size: 170
8460607 TTCTACCTAA
* * ** * * **
8460617 AATCAATTATGAGATTATAAAACTATTGAAAGCGAGTAATA-ACGCTTTCAAAGGCATAAGTGAC
1 AATCAATTATGAGATTATAAAACCATTTAAAGTAAATAATAGAGGCTTTTGAAGGCATAAGTGAC
* *
8460681 TATAAATAGACTTTTCATACCAATGGATGGCTTTTGCTTCATGTTTCTCAAGACAGATATTTAAT
66 TATAAATAGACTTTTCATACCAATGGATGGCTTTTGCTTCATGTTT-TCAAGATAGAAATTTAAT
********* *
8460746 TATAATATATTTTAAT-AAAAAATATAAANNNNNNNNNNTTAA
130 TATAATATATTTTAATCAAAAAATA-AAA-AAATTCAACTTAG
* * ** * *
8460788 AATCAATTACGAGATTATAAAACCATTTAAAGTGAATAATA-ATTCTTTTGAAGGTATGAGTGAC
1 AATCAATTATGAGATTATAAAACCATTTAAAGTAAATAATAGAGGCTTTTGAAGGCATAAGTGAC
* ** * * * * *
8460852 TATAAAT-GAACTTTTCTTTTCAGTGGATGTCTTTTGCCTCATGTTTTCAAAGATAGACATTCAA
66 TATAAATAG-ACTTTTCATACCAATGGATGGCTTTTGCTTCATGTTTTC-AAGATAGAAATTTAA
* * * * * * *
8460916 TTCTTATATATTTCAACCAAAAATTTAAAAAATTTAACTT-G
129 TTATAATATATTTTAATCAAAAAATAAAAAAATTCAACTTAG
* * * * ** * *
8460957 CAATCAATTATGGGATTATAAAACTATTTAAAGTAAGTAA-CGAGGCTTTCAAAGGCTTAAGTAA
1 -AATCAATTATGAGATTATAAAACCATTTAAAGTAAATAATAGAGGCTTTTGAAGGCATAAGTGA
*
8461021 CTATAAATAGACTTTTCATACCAATAGATGGCTTTTGCTTCACT-TTTATCAAGATAGAAATTTA
65 CTATAAATAGACTTTTCATACCAATGGATGGCTTTTGCTTCA-TGTTT-TCAAGATAGAAATTTA
**
8461085 ATTATAATATATTTTAATCAAAAGCGTAAAAAAATTCAACTTAG
128 ATTATAATATATTTTAATCAAAA-AATAAAAAAATTCAACTTAG
* * * *
8461129 AATTAATTATGAGTTTATAAAACCATTTAAAGTAAATAATAGA-GATTTTGAAGGCATAAATGAC
1 AATCAATTATGAGATTATAAAACCATTTAAAGTAAATAATAGAGGCTTTTGAAGGCATAAGTGAC
8461193 TATAAATAGACT
66 TATAAATAGACT
8461205 ATTCTTGCCA
Statistics
Matches: 327, Mismatches: 79, Indels: 22
0.76 0.18 0.05
Matches are distributed among these distances:
170 120 0.37
171 198 0.61
172 9 0.03
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.35
Consensus pattern (170 bp):
AATCAATTATGAGATTATAAAACCATTTAAAGTAAATAATAGAGGCTTTTGAAGGCATAAGTGAC
TATAAATAGACTTTTCATACCAATGGATGGCTTTTGCTTCATGTTTTCAAGATAGAAATTTAATT
ATAATATATTTTAATCAAAAAATAAAAAAATTCAACTTAG
Found at i:8461288 original size:341 final size:342
Alignment explanation
Indices: 8460617--8461297 Score: 746
Period size: 341 Copynumber: 2.0 Consensus size: 342
8460607 TTCTACCTAA
* * *
8460617 AATCAATTATGAGATTATAAAACTATTGAAAGCGAGTAATAACGCTTTCAAAGGCATAAGTGACT
1 AATCAATTATGAGATTATAAAACTATTGAAAGCAAGTAACAACGCTTTCAAAGGCATAAGTAACT
* * *
8460682 ATAAATAGACTTTTCATACCAATGGATGGCTTTTGCTTCATGTTTCTCAAGACAGATATTTAATT
66 ATAAATAGACTTTTCATACCAATAGATGGCTTTTGCTTCATGTTTATCAAGACAGAAATTTAATT
* **********
8460747 ATAATATATTTTAATAAAAAATATAAANNNNNNNNNNTTAAAATCAATTACGAGATTATAAAACC
131 ATAATATATTTTAATAAAAAACATAAAAAAATTCAACTTAAAATCAATTACGAGATTATAAAACC
* ** * * * * **
8460812 ATTTAAAGTGAATAATAATTCTTTTGAAGGTATGAGTGACTATAAATGAACTTTTCTTTTCAGTG
196 ATTTAAAGTAAATAATAATGATTTTGAAGGCATAAATGACTATAAATGAACTATTCTTGCCAGTG
* * * * *
8460877 GATGTCTTTTGCCTCATGTTTTCAAAGATAGACATTCAATTCTTATATATTTCAACCAAAAAT-T
261 AATGTCTTTTGCCTCAAGTTTTCAAAGATAAACATTCAATTATAATATATTTCAACCAAAAATGT
* *
8460941 TAAAAAATTTAACTTGC
326 AAAAAAATTCAACTTGC
* * * * * *
8460958 AATCAATTATGGGATTATAAAACTATTTAAAGTAAGTAACGAGGCTTTCAAAGGCTTAAGTAACT
1 AATCAATTATGAGATTATAAAACTATTGAAAGCAAGTAACAACGCTTTCAAAGGCATAAGTAACT
*
8461023 ATAAATAGACTTTTCATACCAATAGATGGCTTTTGCTTCACT-TTTATCAAGATAGAAATTTAAT
66 ATAAATAGACTTTTCATACCAATAGATGGCTTTTGCTTCA-TGTTTATCAAGACAGAAATTTAAT
* * * * * * *
8461087 TATAATATATTTTAATCAAAAGCGTAAAAAAATTCAACTTAGAATTAATTATGAGTTTATAAAAC
130 TATAATATATTTTAATAAAAAACATAAAAAAATTCAACTTAAAATCAATTACGAGATTATAAAAC
8461152 CATTTAAAGTAAATAATAGA-GATTTTGAAGGCATAAATGACTATAAAT-AGACTATTCTTGCCA
195 CATTTAAAGTAAATAATA-ATGATTTTGAAGGCATAAATGACTATAAATGA-ACTATTCTTGCCA
*** * ** * * * *
8461215 GTGAATGAT-TGTTTTTTTTAAG-TTTCTTGAGGTAAACATTCAATTATAATATGTTTTAA-CTA
258 GTGAATG-TCT-TTTGCCTCAAGTTTTC-AAAGATAAACATTCAATTATAATATATTTCAACCAA
8461277 AAATGTAAAAAAATTCAACTT
320 AAATGTAAAAAAATTCAACTT
8461298 AAAANNNNNN
Statistics
Matches: 276, Mismatches: 57, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
340 1 0.00
341 228 0.83
342 47 0.17
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.36
Consensus pattern (342 bp):
AATCAATTATGAGATTATAAAACTATTGAAAGCAAGTAACAACGCTTTCAAAGGCATAAGTAACT
ATAAATAGACTTTTCATACCAATAGATGGCTTTTGCTTCATGTTTATCAAGACAGAAATTTAATT
ATAATATATTTTAATAAAAAACATAAAAAAATTCAACTTAAAATCAATTACGAGATTATAAAACC
ATTTAAAGTAAATAATAATGATTTTGAAGGCATAAATGACTATAAATGAACTATTCTTGCCAGTG
AATGTCTTTTGCCTCAAGTTTTCAAAGATAAACATTCAATTATAATATATTTCAACCAAAAATGT
AAAAAAATTCAACTTGC
Done.