Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398260.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1563.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6335
ACGTcount: A:0.18, C:0.06, G:0.07, T:0.17

Warning! 3355 characters in sequence are not A, C, G, or T


Found at i:1980 original size:26 final size:27

Alignment explanation


    Indices: 1938--1990  Score: 99
    Period size: 26  Copynumber: 2.0  Consensus size: 27

       1928 AAAATATAAA

                                       
       1938 AATGTAAAAAAAATACAACTTAATATC
          1 AATGTAAAAAAAATACAACTTAATATC

                                       
       1965 AATGT-AAAAAAATACAACTTAATATC
          1 AATGTAAAAAAAATACAACTTAATATC

       1991 CATTTAAANN


Statistics
Matches: 26,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  26   21  0.81
  27    5  0.19

ACGTcount: A:0.58, C:0.11, G:0.04, T:0.26


Consensus pattern (27 bp):   
AATGTAAAAAAAATACAACTTAATATC

Done.