Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398282.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1586.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 786

Length: 1311
ACGTcount: A:0.21, C:0.08, G:0.08, T:0.19

Warning! 579 characters in sequence are not A, C, G, or T


Found at i:256 original size:41 final size:41

Alignment explanation


    Indices: 199--280  Score: 155
    Period size: 41  Copynumber: 2.0  Consensus size: 41

        189 CTACCTTGAG

                                                     
        199 AACCGTGAGGAAAAAAGCATTAATTGATAACAAAAGACTAT
          1 AACCGTGAGGAAAAAAGCATTAATTGATAACAAAAGACTAT

                                                *    
        240 AACCGTGAGGAAAAAAGCATTAATTGATAACAAAAGGCTAT
          1 AACCGTGAGGAAAAAAGCATTAATTGATAACAAAAGACTAT

        281 TTTTGATTAA


Statistics
Matches: 40,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  41   40  1.00

ACGTcount: A:0.50, C:0.12, G:0.18, T:0.20


Consensus pattern (41 bp):   
AACCGTGAGGAAAAAAGCATTAATTGATAACAAAAGACTAT
Done.