Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398283.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1587.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2794
ACGTcount: A:0.27, C:0.08, G:0.10, T:0.24

Warning! 856 characters in sequence are not A, C, G, or T


Found at i:1858 original size:172 final size:172

Alignment explanation


    Indices: 1565--1876  Score: 421
    Period size: 172  Copynumber: 1.8  Consensus size: 172

       1555 NAAGGTGGAC

                                          **                                 
       1565 ATTCAATTATAGTCTGTTTTAACAAAAAATGTAAAAAATTTCAACGAAAAATCAATTATGAGATT
          1 ATTCAATTATAGTCTGTTTTAACAAAAAATACAAAAAATTTCAACGAAAAATCAATTATGAGATT

                       *                              * * *                  
       1630 ATAAAACCATTTAAACCGAGTACAAAAGCTTTTGAAAGAATGCGTGGCTATAAATGGACTTTTCT
         66 ATAAAACCATTAAAACCGAGTACAAAAGCTTTTGAAAGAATGAGCGACTATAAATGGACTTTTCT

               *                                      
       1695 TCTTAATGAAAAAGCTTTTTCCGCACGTGTCCCAAGGTAAGT
        131 TCTCAATGAAAAAGCTTTTTCCGCACGTGTCCCAAGGTAAGT

                         *        * *                     ***            *   
       1737 ATTCAATTATAGTTTGTTTTAATAGAAAATACAAACAAA-TTCAACTTTAAATCAATTATGGGAT
          1 ATTCAATTATAGTCTGTTTTAACAAAAAATACAAA-AAATTTCAACGAAAAATCAATTATGAGAT

                            *        *            *            *             
       1801 TATAAAACCATTAAAAGCGAGTA-ACAAGCTTTTTGAAGGAATGAGCGACTCTAAATGGACTTTT
         65 TATAAAACCATTAAAACCGAGTACAAAAGC-TTTTGAAAGAATGAGCGACTATAAATGGACTTTT

               *        
       1865 CTTGTCAATGAA
        129 CTTCTCAATGAA

       1877 TGCNNNNNNN


Statistics
Matches: 119,  Mismatches: 19, Indels: 4
        0.84            0.13        0.03

Matches are distributed among these distances:
 171    5  0.04
 172  111  0.93
 173    3  0.03

ACGTcount: A:0.40, C:0.13, G:0.14, T:0.32


Consensus pattern (172 bp):   
ATTCAATTATAGTCTGTTTTAACAAAAAATACAAAAAATTTCAACGAAAAATCAATTATGAGATT
ATAAAACCATTAAAACCGAGTACAAAAGCTTTTGAAAGAATGAGCGACTATAAATGGACTTTTCT
TCTCAATGAAAAAGCTTTTTCCGCACGTGTCCCAAGGTAAGT
Done.