Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398285.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1589.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2568
ACGTcount: A:0.19, C:0.06, G:0.07, T:0.19

Warning! 1233 characters in sequence are not A, C, G, or T


Found at i:324 original size:172 final size:172

Alignment explanation


    Indices: 1--326  Score: 402
    Period size: 172  Copynumber: 1.9  Consensus size: 172

                                    *                          *             
          1 TATGAGATTATAAAACTATTTAAAGCGAGTAATAAGCCTTTTAAAGAAATTGGTGACTCTAAATA
          1 TATGAGATTATAAAACTATTTAAAACGAGTAATAAGCCTTTTAAAGAAATTAGTGACTCTAAATA

                                             *      *   *               **   
         66 GACATTTCTTATCAATGAATGCTTGTTTCTTCAGGTTTCTTGAGGTAGACATTCAATTATTGTAT
         66 GACATTTCTTATCAATGAATGCTTGTTTCTTCACGTTTCTCGAGCTAGACATTCAATTATAATAT

                 **********                           
        131 GTTTTNNNNNNNNNNATAAAAAAAATTCAACTTAAAATCAAA
        131 GTTTTAATAAAAAATATAAAAAAAATTCAACTTAAAATCAAA

                     *                           *    *   *                 *
        173 TATGAGATTGTAAAACTATTTAAAACGAGTAATAAGCTTTTTGAAGGAATTAGTGACTCTAAATG
          1 TATGAGATTATAAAACTATTTAAAACGAGTAATAAGCCTTTTAAAGAAATTAGTGACTCTAAATA

               *      *                     *                 *              
        238 GACTTTTCTTGTCAATGAATGCTTAGTTTCTTTACGTTTCTCGAGCTAGATATTCAA-TATAATA
         66 GACATTTCTTATCAATGAATGCTT-GTTTCTTCACGTTTCTCGAGCTAGACATTCAATTATAATA

                                     
        302 TGTTTTAATAAAAAATATAAAAAAA
        130 TGTTTTAATAAAAAATATAAAAAAA

        327 NNNNNNNNNN


Statistics
Matches: 127,  Mismatches: 26, Indels: 2
        0.82            0.17        0.01

Matches are distributed among these distances:
 172  100  0.79
 173   27  0.21

ACGTcount: A:0.37, C:0.10, G:0.13, T:0.36


Consensus pattern (172 bp):   
TATGAGATTATAAAACTATTTAAAACGAGTAATAAGCCTTTTAAAGAAATTAGTGACTCTAAATA
GACATTTCTTATCAATGAATGCTTGTTTCTTCACGTTTCTCGAGCTAGACATTCAATTATAATAT
GTTTTAATAAAAAATATAAAAAAAATTCAACTTAAAATCAAA
Done.