Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398291.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1595.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5167
ACGTcount: A:0.15, C:0.06, G:0.05, T:0.17

Warning! 2946 characters in sequence are not A, C, G, or T


Found at i:4137 original size:171 final size:171

Alignment explanation


    Indices: 3977--4287  Score: 423
    Period size: 171  Copynumber: 1.8  Consensus size: 171

       3967 NNNNNNNNNN

                           *                          *        *             
       3977 CTTT-AAATGGTTTTCTAATCTCATAATTGATTTTAACTTGACTTGTTTTACATTTTTTATTAAA
          1 CTTTGAAA-GGTTTTATAATCTCATAATTGATTTTAACTTGAATTGTTTTAAATTTTTTATTAAA

               *          *        *     *                                   
       4041 ACAGA-TAATAATTGAATGTCTATCATGAGAAACGTGAAG-GAAAGAGTATTCATT-ATCAAGAA
         65 ACAAACT-ATAATTAAATGTCTACCATGACAAACGTGAAGAGAAA-AGTATTCATTGAT-AAGAA

                                                         
       4103 AAGTCCATTTATAGTTACTTATTCTTTTAAAAGCCTGTTTACATG
        127 AAGTCCATTTATAGTTACTTATTCTTTTAAAAGCCTGTTTACATG

                               *               **       *             *      
       4148 CTTTGAAAGGTTTTATAATGTCATAATTGATTTTATGTTGAATTTTTTTAAATTTTTTGTTAAAA
          1 CTTTGAAAGGTTTTATAATCTCATAATTGATTTTAACTTGAATTGTTTTAAATTTTTTATTAAAA

                                *  *      *                                  
       4213 CAAACTATAATTAAATGTCTGCCTTGACAATCGTGAAGAGAAAAGTATTCATTGATAAGAAAAGT
         66 CAAACTATAATTAAATGTCTACCATGACAAACGTGAAGAGAAAAGTATTCATTGATAAGAAAAGT

                      
       4278 CCATTTATAG
        131 CCATTTATAG

       4288 CCTCCCATTC


Statistics
Matches: 121,  Mismatches: 15, Indels: 8
        0.84            0.10        0.06

Matches are distributed among these distances:
 171  111  0.92
 172   10  0.08

ACGTcount: A:0.35, C:0.10, G:0.14, T:0.41


Consensus pattern (171 bp):   
CTTTGAAAGGTTTTATAATCTCATAATTGATTTTAACTTGAATTGTTTTAAATTTTTTATTAAAA
CAAACTATAATTAAATGTCTACCATGACAAACGTGAAGAGAAAAGTATTCATTGATAAGAAAAGT
CCATTTATAGTTACTTATTCTTTTAAAAGCCTGTTTACATG
Done.