Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398301.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1603.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 648

Length: 1081
ACGTcount: A:0.30, C:0.11, G:0.09, T:0.30

Warning! 216 characters in sequence are not A, C, G, or T


Found at i:336 original size:171 final size:171

Alignment explanation


    Indices: 1--354  Score: 397
    Period size: 171  Copynumber: 2.1  Consensus size: 171

                        *          *             *                  *   *    
          1 AGCCTTATTACTTGCTTTAAATGGTTTTATAACCTCATAATTGATTTTAAGTTGCATTTTTTTAT
          1 AGCCTTATTACTAGCTTTAAATGATTTTATAACCTCAAAATTGATTTTAAGTTGCAATTTGTTAT

                                           *   *  **      *           *    * 
         66 ACTTCTAGTTAAAACAGACTATAAATGAATGTCTACCTTGAGAAACGTGTAGAAAAAGGAATTCA
         66 ACTTCTAGTTAAAACAGACTATAAATGAATGCCTAACTCAAGAAACATGTAGAAAAAGCAATTAA

                *       *     **********             
        131 TTGATAAGAAAAGTCCATNNNNNNNNNNCCATTCCTTCAAA
        131 TTGAGAAGAAAAATCCATTTACAGTCACCCATTCCTTCAAA

                  *                         *                                
        172 AGCCTTCTTACTAGCTTTAAATGATTTTATAATCTCAAAATTGATTTTAAGTT-CAAATTTGTTA
          1 AGCCTTATTACTAGCTTTAAATGATTTTATAACCTCAAAATTGATTTTAAGTTGC-AATTTGTTA

              *  *          *         *                                  *   
        236 TATTTTTCA-TTAAAATAGACTATAATTGAATGCCTAACTCAAGAAACATGTAGAAAAAGCCATT
         65 TACTTCT-AGTTAAAACAGACTATAAATGAATGCCTAACTCAAGAAACATGTAGAAAAAGCAATT

                                                       
        300 AATTGAGAAGAAAAATCCATTTACAGTCACCCATTCCTTCAAA
        129 AATTGAGAAGAAAAATCCATTTACAGTCACCCATTCCTTCAAA

                        
        343 AGCCTTATTACT
          1 AGCCTTATTACT

        355 CACTTTNNNN


Statistics
Matches: 149,  Mismatches: 32, Indels: 4
        0.81            0.17        0.02

Matches are distributed among these distances:
 170    1  0.01
 171  147  0.99
 172    1  0.01

ACGTcount: A:0.36, C:0.15, G:0.11, T:0.35


Consensus pattern (171 bp):   
AGCCTTATTACTAGCTTTAAATGATTTTATAACCTCAAAATTGATTTTAAGTTGCAATTTGTTAT
ACTTCTAGTTAAAACAGACTATAAATGAATGCCTAACTCAAGAAACATGTAGAAAAAGCAATTAA
TTGAGAAGAAAAATCCATTTACAGTCACCCATTCCTTCAAA
Done.