Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398307.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1609.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2225
ACGTcount: A:0.27, C:0.07, G:0.09, T:0.24

Warning! 707 characters in sequence are not A, C, G, or T


Found at i:1067 original size:169 final size:170

Alignment explanation


    Indices: 759--1119  Score: 496
    Period size: 169  Copynumber: 2.1  Consensus size: 170

        749 NNNNNNNNNA

                                    *                  *                 *   
        759 AAAAT-ATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTTACTATAAATGAAATTTTTTTG
          1 AAAATCATTTAAAGCGAGTAATAAAGCTTTCGAAGGCATGGGTGACTATAAATGAAATTTTCTTG

                                  *        *                   *             
        823 TCAACGGATATCTTTTCTTCACGTTTCTCAATGCAAAGATTCAATTATAATCTGTTTTAATAAAA
         66 TCAACGGATATCTTTTCTTCACATTTCTCAAGGCAAAGATTCAATTATAATATGTTTTAATAAAA

                                                    
        888 AGTATAAAAAAATTAAAATTAAAAT-AATTATGAGGTTAT
        131 AGTATAAAAAAATTAAAATTAAAATCAATTATGAGGTTAT

                          *               *         *             * *        
        927 AAAATCATTTAAAGTGAGTAATAAAGCTTTTGAAGGCATGTGTGACTATAAATGGACTTTTCTTG
          1 AAAATCATTTAAAGCGAGTAATAAAGCTTTCGAAGGCATGGGTGACTATAAATGAAATTTTCTTG

                 *                 *       *   *   *   *                     
        992 -CGAATGGATATCTATTTCTTCATATTTCTCGAGGTAAATATTTAATTATAATATGTTTTAATAA
         66 TC-AACGGATATCT-TTTCTTCACATTTCTCAAGGCAAAGATTCAATTATAATATGTTTTAATAA

                 *       *  *                         
       1056 AAA-TGTAAAAAAGTTCAAATTAAAATCAATTATGAGGTTAT
        129 AAAGTATAAAAAAATTAAAATTAAAATCAATTATGAGGTTAT

                                   
       1097 AAAATCATTTAAAGCGAGTAATA
          1 AAAATCATTTAAAGCGAGTAATA

       1120 NNNNNNNNNN


Statistics
Matches: 168,  Mismatches: 21, Indels: 6
        0.86            0.11        0.03

Matches are distributed among these distances:
 168    6  0.04
 169   81  0.48
 170   81  0.48

ACGTcount: A:0.40, C:0.09, G:0.14, T:0.37


Consensus pattern (170 bp):   
AAAATCATTTAAAGCGAGTAATAAAGCTTTCGAAGGCATGGGTGACTATAAATGAAATTTTCTTG
TCAACGGATATCTTTTCTTCACATTTCTCAAGGCAAAGATTCAATTATAATATGTTTTAATAAAA
AGTATAAAAAAATTAAAATTAAAATCAATTATGAGGTTAT

Done.