Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398309.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1610.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7504
ACGTcount: A:0.19, C:0.07, G:0.06, T:0.19

Warning! 3699 characters in sequence are not A, C, G, or T


Found at i:2620 original size:21 final size:21

Alignment explanation


    Indices: 2590--2633  Score: 61
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       2580 CTGAAGTAAC

                 *               
       2590 GTGAAGAAAAAGCTATTCATA
          1 GTGAAAAAAAAGCTATTCATA

                       *     *   
       2611 GTGAAAAAAAATCTATTTATA
          1 GTGAAAAAAAAGCTATTCATA

              
       2632 GT
          1 GT

       2634 CACTCATTCC


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.48, C:0.07, G:0.16, T:0.30


Consensus pattern (21 bp):   
GTGAAAAAAAAGCTATTCATA
Done.