Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398325.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1625.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5031
ACGTcount: A:0.23, C:0.06, G:0.07, T:0.22

Warning! 2121 characters in sequence are not A, C, G, or T


Found at i:1970 original size:171 final size:172

Alignment explanation


    Indices: 1706--2030  Score: 435
    Period size: 171  Copynumber: 1.9  Consensus size: 172

       1696 NNNNNNNATA

                *      *        *                                            
       1706 AAACTATTTAACGCGAGTAATAAGGCTTTGAAAAGAATGAGTGAATATAAATGAACTTTTCTTGC
          1 AAACCATTTAAAGCGAGTAAGAAGGCTTTGAAAAGAATGAGTGAATATAAATGAACTTTTCTTGC

                     *      *                                 * *            
       1771 CAATGAATGTCTATTTTTTCACGTTTTTCAA-GACAGACATTCAATTATAGTCCATTTTAACTAA
         66 CAATGAATGCCTATTTCTTCACGTTTTTCAAGGACA-ACATTCAATTATAATACATTTTAACTAA

                  *         *                          
       1835 AAATATGAAAAAAATTTAACTTAAAAATAATTATGAGATTATG
        130 AAATATAAAAAAAATTGAACTTAAAAATAATTATGAGATTATG

                                                          *                  
       1878 AAACCATTTAAAGCGA-TAAGAAGGCTTTTGAAAA-AAT-AGGTGACTATAAATGAACTTTTCTT
          1 AAACCATTTAAAGCGAGTAAGAAGGC-TTTGAAAAGAATGA-GTGAATATAAATGAACTTTTCTT

                *                   *           *                  **        
       1940 GCCAGTGAATGCCCT-TTTCTTCATGTTTTTCAAGGTCAACATTCAATTATAATATGTTTTAACT
         64 GCCAATGAATG-CCTATTTCTTCACGTTTTTCAAGGACAACATTCAATTATAATACATTTTAACT

                  *                    
       2004 AAAAATGTAAAAAAAATTGAACTTAAA
        128 AAAAATATAAAAAAAATTGAACTTAAA

       2031 NNNNNNNNNN


Statistics
Matches: 133,  Mismatches: 16, Indels: 9
        0.84            0.10        0.06

Matches are distributed among these distances:
 170    1  0.01
 171  105  0.79
 172   27  0.20

ACGTcount: A:0.41, C:0.12, G:0.13, T:0.34


Consensus pattern (172 bp):   
AAACCATTTAAAGCGAGTAAGAAGGCTTTGAAAAGAATGAGTGAATATAAATGAACTTTTCTTGC
CAATGAATGCCTATTTCTTCACGTTTTTCAAGGACAACATTCAATTATAATACATTTTAACTAAA
AATATAAAAAAAATTGAACTTAAAAATAATTATGAGATTATG
Done.