Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398327.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1627.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4829
ACGTcount: A:0.18, C:0.07, G:0.06, T:0.18

Warning! 2492 characters in sequence are not A, C, G, or T


Found at i:4542 original size:10 final size:10

Alignment explanation


    Indices: 4527--4552  Score: 52
    Period size: 10  Copynumber: 2.6  Consensus size: 10

       4517 TTTGAGTTAA

                      
       4527 ATTTTTTTAT
          1 ATTTTTTTAT

                      
       4537 ATTTTTTTAT
          1 ATTTTTTTAT

                  
       4547 ATTTTT
          1 ATTTTT

       4553 GGCTACANNN


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   16  1.00

ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81


Consensus pattern (10 bp):   
ATTTTTTTAT
Done.