Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398338.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1638.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2129
ACGTcount: A:0.21, C:0.06, G:0.07, T:0.20

Warning! 966 characters in sequence are not A, C, G, or T


Found at i:1449 original size:171 final size:171

Alignment explanation


    Indices: 1272--1579  Score: 388
    Period size: 171  Copynumber: 1.8  Consensus size: 171

       1262 TGGGTGACTC

                   *                   *                 ***       * **      
       1272 TAAATGGGCTTTTCCTCTCAATCAATGGCTTTTTCTACACCTTTCTTGAGGCT-GGCTTTCAATT
          1 TAAATGGACTTTTCCTCTCAATCAATGACTTTTTCTACACCTTTCCAAAGG-TAGACAATCAATT

                 *  *                                           **           
       1336 ATAGTTTGTTTTAA-AGAAAAAAGTAAAAAAATTCAACTCTA-AATCAATTATTAAATTATAAAA
         65 ATAGTCTGCTTTAATA-AAAAAAGTAAAAAAATTCAACT-TATAATCAATTACGAAATTATAAAA

                                                        
       1399 CCATTTAAAGCGGATAATAAGACTTTTGAAAGAATGATTGATTA
        128 CCATTTAAAGCGGATAATAAGACTTTTGAAAGAATGATTGATTA

                          *       *           *    **                    *   
       1443 TAAATGGACTTTTCTTCTCAATGAATGACTTTTTTTACATGTTTCCAAAGGTAGACAATCACTTA
          1 TAAATGGACTTTTCCTCTCAATCAATGACTTTTTCTACACCTTTCCAAAGGTAGACAATCAATTA

                                       *                        *            
       1508 TAGTCTGCTTTAATAAAAAAAGTAAAATAATTCAACTTATAATCAATTACGAGATTATAAAACCA
         66 TAGTCTGCTTTAATAAAAAAAGTAAAAAAATTCAACTTATAATCAATTACGAAATTATAAAACCA

                   
       1573 TTTAAAG
        131 TTTAAAG

       1580 TGANNNNNNN


Statistics
Matches: 114,  Mismatches: 20, Indels: 6
        0.81            0.14        0.04

Matches are distributed among these distances:
 170    3  0.03
 171  110  0.96
 172    1  0.01

ACGTcount: A:0.39, C:0.14, G:0.12, T:0.36


Consensus pattern (171 bp):   
TAAATGGACTTTTCCTCTCAATCAATGACTTTTTCTACACCTTTCCAAAGGTAGACAATCAATTA
TAGTCTGCTTTAATAAAAAAAGTAAAAAAATTCAACTTATAATCAATTACGAAATTATAAAACCA
TTTAAAGCGGATAATAAGACTTTTGAAAGAATGATTGATTA
Done.