Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398345.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1644.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 664

Length: 1107
ACGTcount: A:0.23, C:0.08, G:0.08, T:0.23

Warning! 412 characters in sequence are not A, C, G, or T


Found at i:501 original size:170 final size:170

Alignment explanation


    Indices: 133--505  Score: 426
    Period size: 170  Copynumber: 2.2  Consensus size: 170

        123 NNNNNNNNNN

                           *     *                          *  *             
        133 GCTTATTACTCGCTTGAAATAGTTTTATAATCTCATAATTAATTTTAAGTTTAACTTTTTTACAT
          1 GCTTATTACTCGCTTTAAATAATTTTATAATCTCATAATTAATTTTAAATTGAACTTTTTTACAT

                *                               *                            
        198 TTTTTATTAAAACATACTATAATTGAATGTCTACCTTAAGAATCATGAAGAAACAAGCATTCATT
         66 TTTTGATTAAAACATACTATAATTGAATGTCTACCTCAAGAA-CATGAAGAAACAAGCATTCATT

                                                     
        263 GACAAGAAAAGTCCAGTTAGAGTCACCAATTCCTTCAAAAA
        130 GACAAGAAAAGTCCAGTTAGAGTCACCAATTCCTTCAAAAA

                 **********     *                   *             *        * 
        304 GCTTANNNNNNNNNNTAAATGATTTTATAATCTCATAATTGA-TTTAAATTGAATTTTTTTGATA
          1 GCTTATTACTCGCTTTAAATAATTTTATAATCTCATAATTAATTTTAAATTGAACTTTTTT-ACA

                             *   *           *                     *         
        368 TTTTTGATTAAAACATATTATGATTGAATGTCTGCCTCAAGAA-AGTGAAGAAACCAGCATTCAT
         65 TTTTTGATTAAAACATACTATAATTGAATGTCTACCTCAAGAACA-TGAAGAAACAAGCATTCAT

                            *   **      *       **   *
        432 TGACAAGAAAAGTCCATTTATTGTCACCCATTCCTTTTAAAG
        129 TGACAAGAAAAGTCCAGTTAGAGTCACCAATTCCTTCAAAAA

                                            
        474 GCTTATTACTCGCTTTAAATAATTTTATAATC
          1 GCTTATTACTCGCTTTAAATAATTTTATAATC

        506 NNNNNNNNNN


Statistics
Matches: 158,  Mismatches: 42, Indels: 5
        0.77            0.20        0.02

Matches are distributed among these distances:
 169    1  0.01
 170   89  0.56
 171   68  0.43

ACGTcount: A:0.35, C:0.14, G:0.10, T:0.38


Consensus pattern (170 bp):   
GCTTATTACTCGCTTTAAATAATTTTATAATCTCATAATTAATTTTAAATTGAACTTTTTTACAT
TTTTGATTAAAACATACTATAATTGAATGTCTACCTCAAGAACATGAAGAAACAAGCATTCATTG
ACAAGAAAAGTCCAGTTAGAGTCACCAATTCCTTCAAAAA
Done.