Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398367.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1664.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 873

Length: 1455
ACGTcount: A:0.25, C:0.09, G:0.08, T:0.25

Warning! 486 characters in sequence are not A, C, G, or T


Found at i:614 original size:171 final size:171

Alignment explanation


    Indices: 311--624  Score: 403
    Period size: 171  Copynumber: 1.8  Consensus size: 171

        301 TATAGCCGCT

                  *      *                    *     *             *      *   
        311 CATTCCTTCAAAAGCCTTATTACACGCTTTAAATGATTTTGTAATATCATAATTGAATTTAGGTT
          1 CATTCCATCAAAAACCTTATTACACGCTTTAAATAATTTTATAATATCATAATTCAATTTAAGTT

                               *      *  *                 ** **             
        376 AAATTGTTTTATATTTTTGGCTAAAATAGGCTATAATTGAATGTCTATTTTGAAAAACATGAAGA
         66 AAATTGTTTTATATTTTTGACTAAAACAGACTATAATTGAATGTCTACCTCCAAAAACATGAAGA

                                                     
        441 AAAAACCATTCATAGGTAAAAAAAGATAATTTATAGTTACC
        131 AAAAACCATTCATAGGTAAAAAAAGATAATTTATAGTTACC

                                   *                     *          *        
        482 CATTCCATCAAAAACCTTATTACTCGCTTTAAATAATTTTATAATCTCATAATTCATTTTAAGTT
          1 CATTCCATCAAAAACCTTATTACACGCTTTAAATAATTTTATAATATCATAATTCAATTTAAGTT

                 *            * *         *             *        *      *    
        547 AAATTTTTTTATATTTTTTATTAAAACAGATTATAATTGAATGTTTACCTCCAGAAACATTAAGA
         66 AAATTGTTTTATATTTTTGACTAAAACAGACTATAATTGAATGTCTACCTCCAAAAACATGAAGA

                **       
        612 AAAAGTCATTCAT
        131 AAAAACCATTCAT

        625 TGACTAAAAA


Statistics
Matches: 118,  Mismatches: 25, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
 171  118  1.00

ACGTcount: A:0.39, C:0.12, G:0.09, T:0.39


Consensus pattern (171 bp):   
CATTCCATCAAAAACCTTATTACACGCTTTAAATAATTTTATAATATCATAATTCAATTTAAGTT
AAATTGTTTTATATTTTTGACTAAAACAGACTATAATTGAATGTCTACCTCCAAAAACATGAAGA
AAAAACCATTCATAGGTAAAAAAAGATAATTTATAGTTACC

Done.