Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397365.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_328.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37611
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.21
Warning! 16608 characters in sequence are not A, C, G, or T
Found at i:3980 original size:171 final size:172
Alignment explanation
Indices: 3721--4054 Score: 483
Period size: 171 Copynumber: 1.9 Consensus size: 172
3711 NNNNNNNNNN
* * * *
3721 ATCTCATAATTGATTTTATGTTCAGTTATTTTTACACTATTGGTTAAAACAGACTATAATTGAAT
1 ATCTCAAAATTGATTTTATGTTCAATTATTTTTACACTATTGGTTAAAACAAACTACAATTGAAT
* ** *
3786 GTCTACATCAAGAAACATGAAG-AAAAAGACATTTATTGACAAGAAAAGTTCATTTATAGTCACT
66 GTCTACATCAAGAAACATGAAGAAAAAAG-CATTCATTGACAAGAAAAGAGCATTTATAATCACT
* * *
3850 CATTTCTTCAAAAGCGTTATTACCCATTTTAAATAGTTTTAAT
130 CATTCCTTCAAAAGCCTTATTACCCACTTTAAATAGTTTTAAT
* *
3893 ATCTCAAAATTGATTTTATGTTCAATT-TTTTTACACTTTTGGTTAAGACAAACTACAATTGAAT
1 ATCTCAAAATTGATTTTATGTTCAATTATTTTTACACTATTGGTTAAAACAAACTACAATTGAAT
* * * *
3957 GTCTACCTCAAGAAACTTGAAGAAAAAAGCATTCATTGATAAGAAAAGAGCATTTATAATCTCTC
66 GTCTACATCAAGAAACATGAAGAAAAAAGCATTCATTGACAAGAAAAGAGCATTTATAATCACTC
*
4022 ATTCCTTCAAAAGCCTTATTACTCACTTTAAAT
131 ATTCCTTCAAAAGCCTTATTACCCACTTTAAAT
4055 GATTTTNNNN
Statistics
Matches: 143, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
171 112 0.78
172 31 0.22
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (172 bp):
ATCTCAAAATTGATTTTATGTTCAATTATTTTTACACTATTGGTTAAAACAAACTACAATTGAAT
GTCTACATCAAGAAACATGAAGAAAAAAGCATTCATTGACAAGAAAAGAGCATTTATAATCACTC
ATTCCTTCAAAAGCCTTATTACCCACTTTAAATAGTTTTAAT
Found at i:14214 original size:171 final size:170
Alignment explanation
Indices: 13794--14228 Score: 464
Period size: 170 Copynumber: 2.6 Consensus size: 170
13784 CCTGTCTTGG
* * * * *
13794 GAAAGGTGTAGAAAAATCCATTTATTTGGAAGAAAAGTCCATTTATAGTGTCTCATTCTTTCAAA
1 GAAACGTGTAGAAAAACCCATTTATTTGGAAGAAAAGTCTATTTATAGTCTCTCATTCCTTCAAA
* * * * ** *
13859 AGTCTTATTACTCGCTTCAAATAATTTTCTAATCTCATAATTGATTTTAAGTATAATTTTTTACA
66 AGCCATATTACTCACTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTATAATTTTTTACA
* * * *
13924 TTTTTCATTAAAACAGACTATAATTGAACGCCTGCCTCAA
131 TTTTTCATAAAAACAGACTACAATTAAACGCCTACCTCAA
* * * * ***
13964 GAAATGTATAGAAAAACTCATTTATTTGGAAGAAAAATCTATTTATAGTCTCTCATTCCTTCNNN
1 GAAACGTGTAGAAAAACCCATTTATTTGGAAGAAAAGTCTATTTATAGTCTCTCATTCCTTCAAA
********
14029 NNNNNNNNTACTCACTTTAAATGGTTTTATAAT-TCCATAATTGATTTTAAGT-TGAATTTTTTA
66 AGCCATATTACTCACTTTAAATGGTTTTATAATCT-CATAATTGATTTTAAGTAT-AATTTTTTA
**** *
14092 CATTTTTCATAAAAAC-GAACTACAATTAAATTTTTACCTCGA
129 CATTTTTCATAAAAACAG-ACTACAATTAAACGCCTACCTCAA
*
14134 GAAACGTGTAGAGAAAACCCATTTATTTGGAA-ACAAAGTCTATTTATAGTCTCTCATTCCATCA
1 GAAACGTGTAGA-AAAACCCATTTATTTGGAAGA-AAAGTCTATTTATAGTCTCTCATTCCTTCA
14198 AAAGCCATATTACTCACTTTAAATGGTTTTA
64 AAAGCCATATTACTCACTTTAAATGGTTTTA
14229 NNNNNNNNNN
Statistics
Matches: 211, Mismatches: 49, Indels: 9
0.78 0.18 0.03
Matches are distributed among these distances:
169 3 0.01
170 142 0.67
171 66 0.31
ACGTcount: A:0.34, C:0.15, G:0.10, T:0.38
Consensus pattern (170 bp):
GAAACGTGTAGAAAAACCCATTTATTTGGAAGAAAAGTCTATTTATAGTCTCTCATTCCTTCAAA
AGCCATATTACTCACTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTATAATTTTTTACA
TTTTTCATAAAAACAGACTACAATTAAACGCCTACCTCAA
Found at i:15821 original size:171 final size:171
Alignment explanation
Indices: 15430--16189 Score: 474
Period size: 171 Copynumber: 4.5 Consensus size: 171
15420 NNNNNNNNNT
* * * * *
15430 AAACCATTTAAAGTGAGTAATAAAGTTTTTGAAAGAATGGGAGACTTTAAATGAACTTTTCTTCC
1 AAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGAGACTATAAATAAACTTTTCTTCC
* * * *
15495 AAATAAATGGGTTTTTCTACGCGTTTCCCAAGGTAGACATTCAATTATAGTTTGTTTGAACAAAA
66 AAATAAATGGGTTTTTCTACACGTTTCCCAAGGCAGACATTCAATTATAATTTATTTGAACAAAA
* *
15560 AAAGGAAAAAAATTGAACATAAAATCAATTTTGAGATAGTA
131 AAAGGAAAAAAATTCAACATAAAATCAATTATGAGATAGTA
* * **
15601 AAACCATTTAAAGTGAGTAACAAGGCCTTTGAAGGAATTAGAGACTATAAATAAACTTTTCTTCC
1 AAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGAGACTATAAATAAACTTTTCTTCC
** * * **
15666 AAATAAATGGGTTTTTCTACACGTTTCCGGAGGCAGGCATTCAATTATAATTTATTTTAA-TGAA
66 AAATAAATGGGTTTTTCTACACGTTTCCCAAGGCAGACATTCAATTATAATTTATTTGAACAAAA
* * * * * ********
15730 AAATGTAAAAACTTCAACTTGAAATCAATTATGNNNNNNNN
131 AAAGGAAAAAAATTCAACATAAAATCAATTATGAGATAGTA
** * * **
15771 NNACCATTTAAAGCGACTAATAAGGCTTTTGAAGGAATGGGAGAACTATAAATGCAC-TTT-TTC
1 AAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGAG-ACTATAAATAAACTTTTCTTC
* * * * * * * ** * *
15834 TAAATAAATAGATTTTT-T-CACAGTTCCCCAAGCCA-AGCGTTCAATTATAGTTCGTTTTAA-T
65 CAAATAAATGGGTTTTTCTACAC-GTTTCCCAAGGCAGA-CATTCAATTATAATTTATTTGAACA
* * * * * *
15895 GAAAAA-TAAAACAATT-AATCTTGAAATCCATTATGAGATTA-TA
128 AAAAAAGGAAAAAAATTCAA-CATAAAATCAATTATGAGA-TAGTA
* * * ** * *
15938 AAACCATTGAGAGCG-GCTAATAAGGCTTTTGAAGGAATAAGAGACCATAAATGAACTTTTCTTC
1 AAACCATTTAAAGTGAG-TAATAAGGCTTTTGAAGGAATGGGAGACTATAAATAAACTTTTCTTC
* ** * * * * * *
16002 TAAATAAATAAGTTTTT-TACATGTTTCCCAA-GAAAAGCATTCAATTAT-AGTCAGTTTTAACA
65 CAAATAAATGGGTTTTTCTACACGTTTCCCAAGGCAGA-CATTCAATTATAATTTA-TTTGAACA
* * * *********
16064 AAAAATA--TAAAAAATTCAACTTAAAATTANNNNNNNNNNTA-TA
128 AAAAA-AGGAAAAAAATTCAACATAAAATCA-ATTATGAGATAGTA
* * * * ** *
16107 AAACCATTTAAGGTGACTAATAAGGCTTTTGAAGAAATGAGAGACTATAAATGGACTTTTCTTCT
1 AAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGAGACTATAAATAAACTTTTCTTCC
*
16172 AAATAAATGGCTTTTTCT
66 AAATAAATGGGTTTTTCT
16190 GCTTGTCTCC
Statistics
Matches: 457, Mismatches: 115, Indels: 35
0.75 0.19 0.06
Matches are distributed among these distances:
166 13 0.03
167 65 0.14
168 81 0.18
169 109 0.24
170 70 0.15
171 119 0.26
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.32
Consensus pattern (171 bp):
AAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGAGACTATAAATAAACTTTTCTTCC
AAATAAATGGGTTTTTCTACACGTTTCCCAAGGCAGACATTCAATTATAATTTATTTGAACAAAA
AAAGGAAAAAAATTCAACATAAAATCAATTATGAGATAGTA
Found at i:16005 original size:168 final size:168
Alignment explanation
Indices: 15773--16079 Score: 408
Period size: 168 Copynumber: 1.8 Consensus size: 168
15763 NNNNNNNNNN
* ** * *
15773 ACCATTTAAAGCGACTAATAAGGCTTTTGAAGGAATGGGAGAACTATAAATGCACTTTTTCTAAA
1 ACCATTGAAAGCGACTAATAAGGCTTTTGAAGGAATAAGAGAACCATAAATGAACTTTTTCTAAA
** * **
15838 TAAAT-AGATTTTTTCACA-GTTCCCCAAGCCAAGCGTTCAATTATAGTTC-GTTTTAATGAAAA
66 TAAATAAG-TTTTTT-ACATGTTCCCCAAGAAAAGCATTCAATTATAG-TCAGTTTTAACAAAAA
*
15900 ATA-AAACAATTAATCTTGAAATCCATTATGAGATTATAAA
128 ATATAAAAAATTAATCTTGAAATCCATTATGAGATTATAAA
* *
15940 ACCATTGAGAGCGGCTAATAAGGCTTTTGAAGGAATAAGAG-ACCATAAATGAACTTTTCTTCTA
1 ACCATTGAAAGCGACTAATAAGGCTTTTGAAGGAATAAGAGAACCATAAATGAAC-TTT-TTCTA
*
16004 AATAAATAAGTTTTTTACATGTTTCCCAAGAAAAGCATTCAATTATAGTCAGTTTTAACAAAAAA
64 AATAAATAAGTTTTTTACATGTTCCCCAAGAAAAGCATTCAATTATAGTCAGTTTTAACAAAAAA
16069 TATAAAAAATT
129 TATAAAAAATT
16080 CAACTTAAAA
Statistics
Matches: 120, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
166 11 0.09
167 44 0.37
168 56 0.47
169 9 0.08
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.32
Consensus pattern (168 bp):
ACCATTGAAAGCGACTAATAAGGCTTTTGAAGGAATAAGAGAACCATAAATGAACTTTTTCTAAA
TAAATAAGTTTTTTACATGTTCCCCAAGAAAAGCATTCAATTATAGTCAGTTTTAACAAAAAATA
TAAAAAATTAATCTTGAAATCCATTATGAGATTATAAA
Found at i:23823 original size:172 final size:172
Alignment explanation
Indices: 22737--23994 Score: 924
Period size: 170 Copynumber: 7.4 Consensus size: 172
22727 NNNNNNNNNN
* * * * * * *
22737 TTTTATAACCTCATAATTGATTTTAAGTTGAA--TTTTTTGCATTTCTCATGAAAACAGACTATA
1 TTTTATAATCTCAAAATTGATTTTAAGTTCAATTTTTTTTACATTTTTGATTAAAACAGACTATA
* * * * * * * * * *
22800 ATTGAATGCCTGCTTTGAGAAACTTGTAGAAAAAC-CTATTTAGTT-GGAAGAAAAGTCCATTTA
66 ATTGAATGTCTACCTCGAGAAACATG-AAAAAAACGCAATTCA-TTAGCAAGAAAAGTTCATTTA
* * * *
22863 TATTCTCTCATTCTTTCAAAAGCCTTATTACTCAGTTTAAATGG
129 TAGTCACTCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGG
* * *
22907 TTTTATAATCTCATAATTGATTTTAAGCTGAA--TTTTTTACATTTTCT-ATTAAAACAGACTAT
1 TTTTATAATCTCAAAATTGATTTTAAGTTCAATTTTTTTTACATTTT-TGATTAAAACAGACTAT
* * * * * * * * *
22969 AATTGAGTG-CTCACCTTGGGAAACAT-ATAAAAAACCCAGTT-ATTTGGAAAAAAAGTCCATTT
65 AATTGAATGTCT-ACCTCGAGAAACATGA-AAAAAACGCAATTCATTAGCAAGAAAAGTTCATTT
* * * * * *
23031 ATAGTCCCCCATTCCTTCAAAAACTTTATTAGTCTCTTTAAATGG
128 ATAGTCACTCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGG
* * * * * *
23076 TTTTATAATCTCATAATAT-ATTTTACGTT-AA-CTTTTTTACATTTTTTATTAAAATAGACTGT
1 TTTTATAATCTCAAAAT-TGATTTTAAGTTCAATTTTTTTTACATTTTTGATTAAAACAGACTAT
* * * ** * *
23138 AATTGAATGCCTGCCTCAAGAAATGTGTAAAAAAAC-CCATTTATTTAG-AAGAAAAG-TCAATT
65 AATTGAATGTCTACCTCGAGAAACATG-AAAAAAACGCAATTCA-TTAGCAAGAAAAGTTC-ATT
* * * * * ** *
23200 CATAAT-ATCTCATTCTTTCAACAGCTTTATTACTCTTTTTAAACGG
127 TATAGTCA-CTCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGG
* * * * * *
23246 TTTTATAATCTTATAATTGATTTTAAGTT-GATTATTTTTACATTTTTGACTAAAATAGACTATA
1 TTTTATAATCTCAAAATTGATTTTAAGTTCAATTTTTTTTACATTTTTGATTAAAACAGACTATA
* * * * *
23310 AATGAATGTCTACCTCTAGAAACGTGAAAAAAATG-AATTCATTTGCAAGAAAAG-TCTATTTAT
66 ATTGAATGTCTACCTCGAGAAACATGAAAAAAACGCAATTCATTAGCAAGAAAAGTTC-ATTTAT
*
23373 AGTCACCCATTCCTTCAAGAA-CCTTATTACTCACTTTAAATGG
130 AGTCACTCATTCCTTCAA-AAGCCTTATTACTCACTTTAAATGG
* * ** **
23416 TTCTATAATCTCAAAATTGATTTTAAGTTCAATTTTTTTTACTTTTTTGATTAAATTAGGTTATA
1 TTTTATAATCTCAAAATTGATTTTAAGTTCAATTTTTTTTACATTTTTGATTAAAACAGACTATA
* * * * * * * * * *
23481 ATTAAATATTTACATTGAGAAACATGAAGGAAAA-G-ACATTCAATGGTAAGAAAAATTCATTTA
66 ATTGAATGTCTACCTCGAGAAACATGAA-AAAAACGCA-ATTCATTAGCAAGAAAAGTTCATTTA
* * * * * * *
23544 TAGTCGCACATT-ATTCAAAAGCC-AATTACTCCCTTCAACGAGGG
129 TAGTCACTCATTCCTTCAAAAGCCTTATTACTCACTTTAA--ATGG
* * * * * *
23588 TTTTATAAATC-C-AAA-TGATTTCATGTTCAATTATTTTTACATTATTGGTTAAAACATACTAT
1 TTTTAT-AATCTCAAAATTGATTTTAAGTTCAATTTTTTTTACATTTTTGATTAAAACAGACTAT
* *
23650 AATTGAATGTCTACATCGAGAAACATGAAGAAAAAGGCAATT-ATTAGCAAGAAAAGTTCATTTA
65 AATTGAATGTCTACCTCGAGAAACATGAA-AAAAACGCAATTCATTAGCAAGAAAAGTTCATTTA
* * *
23714 TAGTCACTCATTCCTTCAAAAGCCTTATTACCCAATTTAAATGA
129 TAGTCACTCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGG
* * * *
23758 TTTTA-ATATCTCAAAATTGATTTTATGTTCAATTTTTTTTACATTTTTGGTTAAGACAAACTAT
1 TTTTATA-ATCTCAAAATTGATTTTAAGTTCAATTTTTTTTACATTTTTGATTAAAACAGACTAT
* * * * * *
23822 AATTGAATGTCTACCTTGAAAAACTTGAAGAAAAAAGC-ATTCATT-GATAAGAAAAGATCATTT
65 AATTGAATGTCTACCTCGAGAAACATGAA-AAAAACGCAATTCATTAG-CAAGAAAAGTTCATTT
* *
23885 ATAATCTCTCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGG
128 ATAGTCACTCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGG
********** * * *
23930 TNNNNNNNNNNCAAAATTGATTTTATGTTCAATTGTTTTTACATTTTTGGTTAAAACAGACTATA
1 TTTTATAATCTCAAAATTGATTTTAAGTTCAATTTTTTTTACATTTTTGATTAAAACAGACTATA
23995 GTTGGATGCC
Statistics
Matches: 882, Mismatches: 166, Indels: 78
0.78 0.15 0.07
Matches are distributed among these distances:
168 7 0.01
169 139 0.16
170 357 0.40
171 136 0.15
172 237 0.27
173 6 0.01
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (172 bp):
TTTTATAATCTCAAAATTGATTTTAAGTTCAATTTTTTTTACATTTTTGATTAAAACAGACTATA
ATTGAATGTCTACCTCGAGAAACATGAAAAAAACGCAATTCATTAGCAAGAAAAGTTCATTTATA
GTCACTCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGG
Found at i:33915 original size:170 final size:155
Alignment explanation
Indices: 33739--34059 Score: 322
Period size: 170 Copynumber: 2.0 Consensus size: 155
33729 TAAAGCAGCT
* ** * *
33739 AATAAGGATTTTGAATGAATGAGAGACTATAAATCGACTTTTCTTTTAAATAAATGAGTTTTTCT
1 AATAAGGATTTTGAAAGAATGAGAGACTATAAATCGACTTTTCTTCCAAATAAAGGACTTTTTCT
* * *
33804 ACACAT-TTCTCAAGGAAGGCATTCAATTATAGT-CTATTTTAATGAAAATTGTAAAAAATTCAA
66 ACACATCTCCT-AAGGAAGGCATTCAATTATAGTCCT-TTTTAATGAAAAATATAAAAAATTCAA
33867 CTTAAAATCAATTATGAGATTATACAA
129 CTTAAAATCAATTATGAGATTATACAA
* *
33894 NNNNNNNNNNNNNNNAATAAGGCTTTTGAAAGAATGAGAGACTATAAATGGACTTTTCTTCCAAA
1 ---------------AATAAGGATTTTGAAAGAATGAGAGACTATAAATCGACTTTTCTTCCAAA
* *
33959 TAAAGGACTTTTTCTACACATCTCCTGAGGGAGGCATTCAATTATAGTCCTTTTTAATGAAAAAT
51 TAAAGGACTTTTTCTACACATCTCCTAAGGAAGGCATTCAATTATAGTCCTTTTTAATGAAAAAT
** * * *
34024 ATAAAAAATTTGATTTGAAATCAATTATGAGCTTAT
116 ATAAAAAATTCAACTTAAAATCAATTATGAGATTAT
34060 NNNNNNNNNN
Statistics
Matches: 132, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
170 127 0.96
171 5 0.04
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.34
Consensus pattern (155 bp):
AATAAGGATTTTGAAAGAATGAGAGACTATAAATCGACTTTTCTTCCAAATAAAGGACTTTTTCT
ACACATCTCCTAAGGAAGGCATTCAATTATAGTCCTTTTTAATGAAAAATATAAAAAATTCAACT
TAAAATCAATTATGAGATTATACAA
Found at i:37478 original size:171 final size:170
Alignment explanation
Indices: 37183--37611 Score: 470
Period size: 171 Copynumber: 2.5 Consensus size: 170
37173 NNNNNNAGGC
* * * *
37183 AAGAAAAGTCCATTTATAGTCTCTCATTCCTTCACAAGACTTATTACTAGATTTAAAT-AATTTT
1 AAGAAAAGTCCATTTATAGTCTCTCATTCCTTCAAAAGCCTTATTACTCGCTTTAAATGAA-TTT
* *
37247 ATAATCTCATAATTGATTTAAAATTAAATTTTTTTATATTTCACATAAAAACAAACTATAATTGA
65 ATAATCTCATAATTGATTTTAAGTTAAATTTTTTTATATTTCACATAAAAACAAACTATAATTGA
* * **
37312 ATGTCTATCTTGAAAAACATATAAAAAAACTCATTTATATGG
130 ATGCCTACCGAGAAAAACATATAAAAAAAC-CATTTATATGG
** *
37354 AAGAAAAGTTTATTTATAGTCTCTCATTCCTTCAAAAGCCCTT-TTACTCGCTTTAAATGCATTT
1 AAGAAAAGTCCATTTATAGTCTCTCATTCCTTCAAAAG-CCTTATTACTCGCTTTAAATGAATTT
* *** * *
37418 CTAATCTCATAATTGATTTTAAGTGT-AATTTTTTTA-ATTTTTTTATGAAAACAGACTATAATT
65 ATAATCTCATAATTGATTTTAAGT-TAAATTTTTTTATA-TTTCACATAAAAACAAACTATAATT
* * * * * * * *
37481 GAATGCCTCCCGAGGAAGACGTGTAGAAAAGCCATTTATTTGG
128 GAATGCCTACCGAGAAAAACATATAAAAAAACCATTTATATGG
* * * * * * **
37524 AAGAAAAATCCATTTTTAGTGTCTTATTCCTTCAAAAGCTTTATTAGTCGCTTTAAATGGTTTTA
1 AAGAAAAGTCCATTTATAGTCTCTCATTCCTTCAAAAGCCTTATTACTCGCTTTAAATGAATTTA
37589 TAATCTCATAATTGATTTTAAGT
66 TAATCTCATAATTGATTTTAAGT
Statistics
Matches: 215, Mismatches: 38, Indels: 11
0.81 0.14 0.04
Matches are distributed among these distances:
169 3 0.01
170 84 0.39
171 123 0.57
172 5 0.02
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (170 bp):
AAGAAAAGTCCATTTATAGTCTCTCATTCCTTCAAAAGCCTTATTACTCGCTTTAAATGAATTTA
TAATCTCATAATTGATTTTAAGTTAAATTTTTTTATATTTCACATAAAAACAAACTATAATTGAA
TGCCTACCGAGAAAAACATATAAAAAAACCATTTATATGG
Done.