Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398402.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1700.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5205
ACGTcount: A:0.17, C:0.08, G:0.07, T:0.18

Warning! 2567 characters in sequence are not A, C, G, or T


Found at i:3451 original size:21 final size:21

Alignment explanation


    Indices: 3425--3464  Score: 55
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       3415 GAGAAACGTG

                                  
       3425 AAGAAAGAGCC-ATTCATAGGC
          1 AAGAAA-AGCCTATTCATAGGC

                          *    
       3446 AAGAAAAGCCTATTTATAG
          1 AAGAAAAGCCTATTCATAG

       3465 TCACCCATGC


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  20    4  0.24
  21   13  0.76

ACGTcount: A:0.45, C:0.15, G:0.20, T:0.20


Consensus pattern (21 bp):   
AAGAAAAGCCTATTCATAGGC
Done.