Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398407.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1706.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1884
ACGTcount: A:0.31, C:0.08, G:0.11, T:0.29

Warning! 402 characters in sequence are not A, C, G, or T


Found at i:539 original size:170 final size:169

Alignment explanation


    Indices: 1--560  Score: 519
    Period size: 170  Copynumber: 3.3  Consensus size: 169

                      *                                      *    *    *     
          1 AAAATAAATTTTGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTAAACGAATCGGTGA
          1 AAAATAAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTGTAAAGGAATGGGTGA

                    *       *  **    *                      *                
         66 CTATAAATAGACTTTTTTTGCCAATAAATGTCTTTTTTTCATATTTCTTAAGGTAGACATTCAAT
         66 CTATAAATGGACTTTTCTTATCAATGAATGTCTTTTTTTCATATTTCTCAAGGTAGACATTCAAT

            **********                      *       
        131 NNNNNNNNNNTTTAACTAAAAATATAAAAAAACTTAACTT
        131 TATAGTCTATTTTAACTAAAAATAT-AAAAAATTTAACTT

            *                       *               ********** *   *     *   
        171 GAAATAAATTATGAGATTATAAAATAATTTAAAGCGAGTANNNNNNNNNNTGAAGAAATGGTTGA
          1 AAAATAAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTGTAAAGGAATGGGTGA

                               * *     *  *        *  *    *          *      
        236 CTATAAATGGACTTTTCTTTTTAATGATTGGCTTTATTTACACATTTTTCAAGGTAGATATTCAA
         66 CTATAAATGGACTTTTCTTATCAATGAATGTCTTT-TTTTCATATTTCTCAAGGTAGACATTCAA

                     *    *  *     *            *     
        301 TTATAGTCTGTTTTGACCATAAAGTCA-AAAAAATTCAACTT
        130 TTATAGTCTATTTTAACTA-AAAAT-ATAAAAAATTTAACTT

                  *   *  *      *            *       *                     * 
        342 AAAATATATTTTGGGATTATGAAACAATTTAAATCGAGTAAGAAGGCTTGTAAAGGAATGGGTCA
          1 AAAATAAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTGTAAAGGAATGGGTGA

                                                      *        *             
        407 CTATAAATGGACTTTTCTTATCAATGAATGTCTTTTTTTCATGTTTCTCAAAGTAGACATTCAAT
         66 CTATAAATGGACTTTTCTTATCAATGAATGTCTTTTTTTCATATTTCTCAAGGTAGACATTCAAT

               *                                    
        472 TATTGTCTATTTTAACTAAAAATATAAAACAATTTAACTT
        131 TATAGTCTATTTTAACTAAAAATATAAAA-AATTTAACTT

                        *                    *               
        512 AAAATAAATTATAAGATTATAAAACAATTTAAAACGAGTAATAAGGCTT
          1 AAAATAAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTT

        561 CTGAANNNNN


Statistics
Matches: 295,  Mismatches: 90, Indels: 10
        0.75            0.23        0.03

Matches are distributed among these distances:
 168    1  0.00
 169    8  0.03
 170  163  0.55
 171  118  0.40
 172    4  0.01
 173    1  0.00

ACGTcount: A:0.39, C:0.09, G:0.12, T:0.36


Consensus pattern (169 bp):   
AAAATAAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTGTAAAGGAATGGGTGA
CTATAAATGGACTTTTCTTATCAATGAATGTCTTTTTTTCATATTTCTCAAGGTAGACATTCAAT
TATAGTCTATTTTAACTAAAAATATAAAAAATTTAACTT
Done.