genome.fa.s1157.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398410.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_171.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38452

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297--1395	341	3.2	333	78	7	940	38	14	12	34	1.83
980--1294	163	1.9	162	82	4	384	38	12	11	37	1.80
297--1417	171	6.6	169	75	9	836	38	14	12	34	1.83
2081--2495	170	2.4	169	73	7	408	33	12	13	38	1.82
5549--6481	170	5.5	171	80	5	921	34	13	12	39	1.82
5549--6481	339	2.7	337	82	6	1062	34	13	12	39	1.82
8440--9216	170	4.6	171	75	7	528	39	13	12	34	1.82
8352--9260	171	5.3	167	75	9	660	38	13	13	34	1.84
9358--9949	170	3.5	170	83	3	674	41	11	12	34	1.80
9299--9949	341	1.9	341	81	6	782	39	11	12	35	1.80
16760--17761	171	5.9	170	79	4	950	37	14	12	34	1.85
16845--17761	341	2.7	340	81	4	1001	38	14	12	34	1.84
19415--20003	171	3.4	169	76	9	514	35	13	12	37	1.83
28309--28615	158	2.0	149	89	3	386	36	13	14	32	1.85
30322--30866	171	3.2	170	73	6	386	39	11	12	33	1.79
33523--34971	170	8.5	171	81	4	1433	38	13	13	34	1.84
33523--34971	341	4.3	341	81	5	1493	38	13	13	34	1.84
36045--36457	170	2.4	170	77	3	429	38	12	13	32	1.83

Tables:   1

The End!