Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398411.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1710.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2574
ACGTcount: A:0.18, C:0.05, G:0.06, T:0.16

Warning! 1404 characters in sequence are not A, C, G, or T


Found at i:1534 original size:169 final size:170

Alignment explanation


    Indices: 1184--1620  Score: 398
    Period size: 170  Copynumber: 2.6  Consensus size: 170

       1174 NNNNNNNAAG

                                 *             *             *       *     * 
       1184 GAATGGGTGACTCTAAATAGATTTTTCTTGTTAATGAATGCTTGTTTCTTAACGTTTTTCAAGGT
          1 GAATGGGTGACTCTAAATAGACTTTTCTTGTTAATCAATGCTTGTTTCTGAACGTTTCTCAAGAT

             *                               **********                      
       1249 AGACATTCAATTATAGTATGTTTTAATAAAAATNNNNNNNNNNTCAACTTAAAATCAATTATAAG
         66 AAACATTCAATTATAGTATGTTTTAATAAAAATATAACAAAATTCAACTTAAAATCAATTATAAG

                         *                    **    
       1314 ATTATAAAACTATTTAAACCAAGTAATAAGCCTTTTGAAA
        131 ATTATAAAACTATATAAACCAAGTAATAAGCCTTCCGAAA

                *                                              *             
       1354 GAATAGGTGACTCTAAATAGACTTTTCTTGTTAATCAATGGCTT-TTTCTGCACGTTTCTCAAGA
          1 GAATGGGTGACTCTAAATAGACTTTTCTTGTTAATCAAT-GCTTGTTTCTGAACGTTTCTCAAGA

                 *         *  *                             *               *
       1418 TAAACTTTCAATTATTGTCTGTTTTAA-AGAAAAT-TAACAAAATTCACCTTAAAATCAATTATG
         65 TAAACATTCAATTATAGTATGTTTTAATA-AAAATATAACAAAATTCAACTTAAAATCAATTATA

                                  **         *         
       1481 AGATTATAAAA-TCATATAAACTGAGTAATAAGGCTTCCGAAA
        129 AGATTATAAAACT-ATATAAACCAAGTAATAAGCCTTCCGAAA

                        **   *          * * *   *        *   *  * *          
       1523 GAATGGGTGACTAAAAAAAGA-TTTTCCATCTCAATGAATAGCTTTTTTTTGTAGGTTTCTCAAG
          1 GAATGGGTGACTCTAAATAGACTTTT-CTTGTTAATCAAT-GCTTGTTTCTGAACGTTTCTCAAG

            *  *   *           *              
       1587 GTAGACAATCAATTATAGTCTGTTTTAATAAAAA
         64 ATAAACATTCAATTATAGTATGTTTTAATAAAAA

       1621 ATGTAAAAAN


Statistics
Matches: 216,  Mismatches: 45, Indels: 12
        0.79            0.16        0.04

Matches are distributed among these distances:
 168    5  0.02
 169   83  0.38
 170  123  0.57
 171    5  0.02

ACGTcount: A:0.37, C:0.12, G:0.13, T:0.36


Consensus pattern (170 bp):   
GAATGGGTGACTCTAAATAGACTTTTCTTGTTAATCAATGCTTGTTTCTGAACGTTTCTCAAGAT
AAACATTCAATTATAGTATGTTTTAATAAAAATATAACAAAATTCAACTTAAAATCAATTATAAG
ATTATAAAACTATATAAACCAAGTAATAAGCCTTCCGAAA
Done.