Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398420.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1719.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4903
ACGTcount: A:0.22, C:0.09, G:0.08, T:0.22

Warning! 1960 characters in sequence are not A, C, G, or T


Found at i:449 original size:172 final size:172

Alignment explanation


    Indices: 1--502  Score: 524
    Period size: 172  Copynumber: 2.9  Consensus size: 172

                                                  *    *     *    * *        
          1 ATTCATTGGCAAGAAAAGTCTATTTATAGTCACCCATTACTTCGAAAGCTTTATAAATCACTTTA
          1 ATTCATTGGCAAGAAAAGTCTATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTA

             * *                        *     *     *     *           *      
         66 ACTAGTTTTATAATCTCAAAATTGATTTTAAGTTCAATTTTTTTTTTC-TTTTCTGGTCAAAACA
         66 AATGGTTTTATAATCTCAAAATTGATTTAAAGTTGAA-TTATTTTTACATTTT-TGGTTAAAACA

            * *          *                          * * 
        130 TATTATAATTGAACGTCTACCCCAAGAAACATAAAGAAAAGAGC
        129 GAATATAATTGAAAGTCTACCCCAAGAAACATAAAGAAAAAAAC

                                     *     *  *                       *      
        174 ATTCATTGGCAAGAAAAGTCTATTTGTAGTCGCCTATTCCTTCAAAAGCCTTATTACTAACTTTA
          1 ATTCATTGGCAAGAAAAGTCTATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTA

                *     *          *         *       *   * *                   
        239 AATGTTTTTAAAATCTCAAAACTGATTTAAATTTGAATTCTTTGTGCATTTTTGGTTAAAACAGA
         66 AATGGTTTTATAATCTCAAAATTGATTTAAAGTTGAATTATTTTTACATTTTTGGTTAAAACAGA

               *             * ***        *           
        304 ATAGAATTGAAAGTCTATCTTGAGAAACATGAAGAAAAAAAC
        131 ATATAATTGAAAGTCTACCCCAAGAAACATAAAGAAAAAAAC

                    **          *                     *                *     
        346 ATTCATTGATAAGAAAAGTCCATTTATAGTCACCCATTCCTTTAAAAGCCTTATTACTCGCTTTA
          1 ATTCATTGGCAAGAAAAGTCTATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTA

                     *        **         *                 *      *          
        411 AATGGTTTTGTAATGC-CTTAATTGATTTGAAGTTGAATTATTTTTATATTTTTTGTT-AAACAG
         66 AATGGTTTTATAAT-CTCAAAATTGATTTAAAGTTGAATTATTTTTACATTTTTGGTTAAAACAG

             *          *       *        
        474 ACTATAATTGAATGTCTACCTCAAGAAAC
        130 AATATAATTGAAAGTCTACCCCAAGAAAC

        503 GTNNNNNNNN


Statistics
Matches: 267,  Mismatches: 60, Indels: 6
        0.80            0.18        0.02

Matches are distributed among these distances:
 171   29  0.11
 172  148  0.55
 173   90  0.34

ACGTcount: A:0.36, C:0.15, G:0.12, T:0.38


Consensus pattern (172 bp):   
ATTCATTGGCAAGAAAAGTCTATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTA
AATGGTTTTATAATCTCAAAATTGATTTAAAGTTGAATTATTTTTACATTTTTGGTTAAAACAGA
ATATAATTGAAAGTCTACCCCAAGAAACATAAAGAAAAAAAC
Done.