Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398422.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1721.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4349
ACGTcount: A:0.17, C:0.07, G:0.06, T:0.18

Warning! 2255 characters in sequence are not A, C, G, or T


Found at i:299 original size:170 final size:171

Alignment explanation


    Indices: 5--369  Score: 482
    Period size: 170  Copynumber: 2.1  Consensus size: 171

          1 TGAC

                 *                 **                   *             *      
          5 AAGAATAGTCCATTTAGAGTCACTTACTCCTTCAAAAAGCTTATTACTCAATTTAAACGGTTTTA
          1 AAGAAAAGTCCATTTAGAGTCACCAACTCCTTCAAAAAGCTTATAACTCAATTTAAACAGTTTTA

                                **                    * *                    
         70 TAATCTCATAATTGATTTTATTTTCAATTTTTTGACATTTTTTATTAAAACAGACTATAATTGAA
         66 TAATCTCATAATTGATTTTAAGTTCAATTTTTTGACATTTTTAAATAAAACAGACTATAATTGAA

             * *      *                               
        135 TTTTTAC-CCGAG-AACTATGAAAAAACAAACATTCATTGAT
        131 TATCTACGCCAAGAAAC-ATGAAAAAACAAACATTCATTGAT

                                      *     *                **      *       
        175 AAGAAAAGTCCATTTAGAGTCACCAATTCCTTTAAAAAGCTTATAACTCGCTTTAAATAGTTTTA
          1 AAGAAAAGTCCATTTAGAGTCACCAACTCCTTCAAAAAGCTTATAACTCAATTTAAACAGTTTTA

                                    *                           *            
        240 TAATCTCATAATTGATTTTAAGTTGAATTTTTTGACATTTTTAAATAAAACATACTATAATTGAA
         66 TAATCTCATAATTGATTTTAAGTTCAATTTTTTGACATTTTTAAATAAAACAGACTATAATTGAA

                    *        *    *      *         * 
        305 TATCTACGTCAAGAAACGTGAAGAAACAAGCATTCATTGTT
        131 TATCTACGCCAAGAAACATGAAAAAACAAACATTCATTGAT

                       *            
        346 AAGAAAAGTCCTTTTAGAGTCACC
          1 AAGAAAAGTCCATTTAGAGTCACC

        370 NNNNNNNNNN


Statistics
Matches: 168,  Mismatches: 25, Indels: 3
        0.86            0.13        0.02

Matches are distributed among these distances:
 170  119  0.71
 171   46  0.27
 172    3  0.02

ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37


Consensus pattern (171 bp):   
AAGAAAAGTCCATTTAGAGTCACCAACTCCTTCAAAAAGCTTATAACTCAATTTAAACAGTTTTA
TAATCTCATAATTGATTTTAAGTTCAATTTTTTGACATTTTTAAATAAAACAGACTATAATTGAA
TATCTACGCCAAGAAACATGAAAAAACAAACATTCATTGAT
Done.