Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398430.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1730.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2535
ACGTcount: A:0.24, C:0.08, G:0.09, T:0.23

Warning! 932 characters in sequence are not A, C, G, or T


Found at i:2469 original size:172 final size:171

Alignment explanation


    Indices: 2166--2535  Score: 455
    Period size: 172  Copynumber: 2.2  Consensus size: 171

       2156 NNNNNNNNNG

                   *                                               *         
       2166 AAGGAATGGGTGACTATAAATGGACTTTTCTTATCAATGAATGCTTGTTTCCTTATGTTTCTAGA
          1 AAGGAATTGGTGACTATAAATGGACTTTTCTTATCAATGAATGCTTGTTTCCTTACGTTTCTAGA

                     *                                                       
       2231 TGTAAACATTCAATTATAGTCTGTTTTAACAAAAAATCTAAAAAAACTCAACTGAAAACCAATTA
         66 TGTAAACATCCAATTATAGTCTGTTTTAACAAAAAATCTAAAAAAACTCAACTGAAAACCAATTA

                                   *        *          
       2296 TGAGATTATAAAACCATGTAAAGTGAGTAATGCT-GCTTTTGA
        131 TGAGATTATAAAACCATGTAAAGCGAGTAAT-ATGGCTTTT-A

                                            *                  *             
       2338 AA-GAATTGGTGACTATAAATGGACTTTTCTTCTCAATGAATTGCTT-TTTTCTGTACGTTTCCT
          1 AAGGAATTGGTGACTATAAATGGACTTTTCTTATCAATGAA-TGCTTGTTTCCT-TACGTTT-CT

                     *                       *       *     *  *   *  *    ** 
       2401 -GA-GCTAAGCATCCAATTATAGTCTGTTTTAATAAAAAATGTAAAAGAATTCAGCTTAAAATTA
         63 AGATG-TAAACATCCAATTATAGTCTGTTTTAACAAAAAATCTAAAAAAACTCAACTGAAAACCA

                   *   *      *  *                       
       2464 ATTATGATATTTTAAAACTATTTAAAGCGAGTAATATGGCTTTTA
        127 ATTATGAGATTATAAAACCATGTAAAGCGAGTAATATGGCTTTTA

                                        
       2509 AAGGAA-TGAGTGACTATAAATGGACTT
          1 AAGGAATTG-GTGACTATAAATGGACTT


Statistics
Matches: 171,  Mismatches: 20, Indels: 14
        0.83            0.10        0.07

Matches are distributed among these distances:
 171   48  0.28
 172  121  0.71
 173    2  0.01

ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36


Consensus pattern (171 bp):   
AAGGAATTGGTGACTATAAATGGACTTTTCTTATCAATGAATGCTTGTTTCCTTACGTTTCTAGA
TGTAAACATCCAATTATAGTCTGTTTTAACAAAAAATCTAAAAAAACTCAACTGAAAACCAATTA
TGAGATTATAAAACCATGTAAAGCGAGTAATATGGCTTTTA
Done.