Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398460.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1758.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1753
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.30

Warning! 316 characters in sequence are not A, C, G, or T


Found at i:552 original size:172 final size:162

Alignment explanation


    Indices: 365--674  Score: 325
    Period size: 172  Copynumber: 1.9  Consensus size: 162

        355 NNNGTAATCA

                 *                       *              * *              *   
        365 TAAATGGACTTTTCTTGCCAATGAATGCCTTTTTCTTCACATTTTTCAAGCTAGACATTCAGTTA
          1 TAAATAGACTTTTCTTGCCAATGAATGCCCTTTTCTTCACATTTCTAAAGCTAGACATTCAATT-

                          *             *    *  *                            
        430 C-AATATGTTTTAATAAAAAATGTAAAACAATTTGAGCCTAAAATCAATCTTGAGATTATAAAAG
         65 CTAATATGTTTTAACAAAAAATGTAAAAAAATTGGAACCTAAAATCAATCTTGAGATTATAAAAG

            *                                          
        494 CATTTAAAGNNNNNNNNNNGGCTTTTGAAGCAATGGGTGATTG
        130 AATTTAAAG----------GGCTTTTGAAGCAATGGGTGATTG

                    *         *                  *            *              
        537 TAAATAGAGTTTTCTTGCTAATGAATGCCCTTTTCTTTACATTTCTAAAGGTAGACATTCAATTC
          1 TAAATAGACTTTTCTTGCCAATGAATGCCCTTTTCTTCACATTTCTAAAGCTAGACATTCAATTC

                * *       *                      *  *       *              * 
        602 TAATTTTTTTTAACCAAAAATGTAAAAAAATTGGAACTTAGAATCAATTTTGAGATTATAAAATA
         66 TAATATGTTTTAACAAAAAATGTAAAAAAATTGGAACCTAAAATCAATCTTGAGATTATAAAAGA

                    
        667 ATTTAAAG
        131 ATTTAAAG

        675 TGAGTAATAA


Statistics
Matches: 116,  Mismatches: 21, Indels: 2
        0.83            0.15        0.01

Matches are distributed among these distances:
 171    1  0.01
 172  115  0.99

ACGTcount: A:0.36, C:0.12, G:0.13, T:0.36


Consensus pattern (162 bp):   
TAAATAGACTTTTCTTGCCAATGAATGCCCTTTTCTTCACATTTCTAAAGCTAGACATTCAATTC
TAATATGTTTTAACAAAAAATGTAAAAAAATTGGAACCTAAAATCAATCTTGAGATTATAAAAGA
ATTTAAAGGGCTTTTGAAGCAATGGGTGATTG
Done.