genome.fa.s121.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397374.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_370.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34856

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1248--2128	172	5.2	169	81	5	898	35	13	12	38	1.82
1248--2133	341	2.6	340	82	6	1072	35	13	12	38	1.82
2027--2236	103	2.0	103	84	0	267	38	10	13	37	1.79
2130--2807	170	4.0	172	80	7	756	35	13	11	38	1.81
3084--4465	171	8.1	170	82	3	1539	36	14	12	36	1.84
3084--5588	342	7.5	341	79	7	2493	36	13	12	37	1.83
4320--4763	149	3.0	148	89	3	642	38	14	12	34	1.83
4618--5588	171	5.7	170	78	7	866	36	13	11	38	1.81
4618--5588	512	1.9	511	84	5	1316	36	13	11	38	1.81
5729--6712	171	5.8	170	75	4	721	36	11	13	34	1.81
5729--6663	342	2.7	334	75	6	813	37	11	12	34	1.80
6990--7168	98	1.8	98	87	2	270	46	9	11	32	1.72
6835--7339	269	1.9	269	84	1	681	41	11	12	34	1.79
7088--8527	171	8.4	171	80	3	1473	38	12	13	36	1.82
7088--8527	341	4.2	343	80	4	1463	38	12	13	36	1.82
9310--9974	171	3.9	170	82	2	762	38	13	12	35	1.83
9310--9953	342	1.9	341	83	3	839	38	13	12	35	1.83
9845--10119	140	2.0	140	82	5	333	41	11	12	34	1.79
9665--10272	311	2.0	311	82	5	764	40	12	12	34	1.81
11498--11833	171	2.0	161	76	10	302	37	10	13	35	1.79
15019--15834	170	4.8	168	79	6	772	40	10	12	36	1.78
17483--17720	117	2.0	118	82	4	293	40	16	11	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17604--19497	171	11.1	171	79	4	1745	36	12	11	38	1.80
19767--20849	170	6.4	171	80	3	1094	38	11	13	36	1.81
21075--21383	171	1.8	171	82	3	406	37	13	13	34	1.84
21774--22771	170	5.8	170	78	8	888	39	12	12	35	1.80
21822--22771	340	2.8	337	79	7	1001	39	12	12	35	1.80
23403--23726	171	1.9	171	82	3	402	37	13	12	37	1.83
24402--24728	171	2.0	159	78	9	334	35	12	12	37	1.81
25545--25883	172	2.0	171	84	4	441	38	11	11	38	1.78
25545--26264	171	4.2	171	74	4	513	36	11	12	37	1.78
26396--28687	171	13.5	169	73	6	1247	38	12	11	35	1.78
28287--28687	170	2.4	168	82	6	461	42	13	10	33	1.78
29175--30206	171	6.0	171	81	3	1118	38	12	13	36	1.82
30219--30836	171	3.6	171	76	6	547	38	11	12	36	1.80
29556--30828	658	1.9	657	81	4	1530	38	11	13	36	1.81
31477--32423	171	5.6	170	77	6	912	34	13	12	39	1.83
31477--32364	339	2.6	341	79	5	837	34	13	12	39	1.83

Tables:   1

The End!