Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397375.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_784.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34138

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2507--2897
172
2.3
171
75
2
399
33
14
12
37
1.83
4062--4376
171
1.9
162
77
12
316
39
9
13
34
1.77
4236--4552
172
1.9
161
77
8
321
38
10
12
35
1.79
4828--5139
171
1.9
161
85
2
349
35
9
16
34
1.81
5903--6216
171
1.8
171
83
4
418
38
11
14
35
1.83
7164--7962
170
4.7
168
76
5
572
36
12
13
33
1.82
7164--8205
170
6.1
168
72
8
556
37
11
13
33
1.81
8336--8652
171
1.9
161
80
7
295
36
12
13
34
1.82
8773--9965
171
7.0
167
75
8
716
38
11
12
34
1.80
8773--9466
173
4.0
170
79
7
679
39
11
13
34
1.81
8773--9466
344
2.0
342
82
6
834
39
11
13
34
1.81
10561--10873
172
1.9
162
84
8
341
38
13
10
34
1.80
11846--11885
21
1.9
21
89
0
62
27
17
12
42
1.85
11237--14090
514
5.6
511
75
6
2127
37
11
13
33
1.80
11237--14101
171
16.7
171
74
5
1770
37
11
13
33
1.81
11237--14101
343
8.4
340
74
6
1464
37
11
13
33
1.81
18931--20937
171
11.7
171
76
3
1532
37
11
13
34
1.80
18931--20932
513
3.9
511
77
4
1873
37
11
13
34
1.80
21337--21648
170
1.9
161
83
2
331
37
12
10
35
1.78
22237--22834
171
3.5
170
75
8
525
38
11
14
33
1.82
23483--25999
171
14.8
171
71
6
1389
34
13
11
36
1.80
31283--32729
171
8.4
170
74
5
969
34
13
11
35
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31755--32722
514
1.9
498
80
3
996
35
13
11
35
1.81
31753--32418
343
1.9
342
78
2
710
35
13
11
36
1.82

Tables:   1

The End!