Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398476.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1772.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2471
ACGTcount: A:0.21, C:0.06, G:0.06, T:0.19

Warning! 1173 characters in sequence are not A, C, G, or T


Found at i:355 original size:171 final size:168

Alignment explanation


    Indices: 149--571  Score: 420
    Period size: 170  Copynumber: 2.5  Consensus size: 168

        139 TTTCTTGAGA

                                         *                   *               
        149 TAGACATTCAATTATTA-TCTGTTTTAATCAAAATATAAAAAAATTCAGGTTAAAATCAATTATT
          1 TAGACATTCAATTA-TAGTCTGTTTTAATGAAAATATAAAAAAATTCA-ATTAAAATCAATTATT

                      *                                 **********           
        213 AGATTATAAAGCCATTTAAAGCAA-GTAATAAGGCCTTTTGAAGNNNNNNNNNNCTATAAATAGA
         64 AGATTATAAAACCATTTAAA--AAGGTAATAAGG-CTTTTGAAGGAATGGGAGGCTATAAATAGA

             *       *                                 
        277 CTTTTCTTGGCAATGAATGCTTTTTTCTTCACTTCTCTCAAGG
        126 CGTTTCTTGACAATGAATGCTTTTTTCTTCACTTCTCTCAAGG

                 *                                   *********               
        320 TAGACGTTCAATTATAGTCTGTTTTAATGAAAATATAAAANNNNNNNNNNTAAAATCAATTATTA
          1 TAGACATTCAATTATAGTCTGTTTTAATGAAAATATAAAA-AAATTCAATTAAAATCAATTATTA

                 *                                                           
        385 GATTACAAAACCATTTAAAAAGTGTAATAAGGCTTTTGAAGGAATGGGAGGCTATAAATAGACGT
         65 GATTATAAAACCATTTAAAAAG-GTAATAAGGCTTTTGAAGGAATGGGAGGCTATAAATAGACGT

                       *              *    *        
        450 TTCTTGACAATTAATGCTTTTTTCTTTACTTTTCTCAAGG
        129 TTCTTGACAATGAATGCTTTTTTCTTCACTTCTCTCAAGG

                                      *         *          *         *      *
        490 TAGACATTCAATTATAGTC-GATTTTTATGAAAAATGTAAAAAAATTGAATTAAAATTAATTATG
          1 TAGACATTCAATTATAGTCTG-TTTTAATG-AAAATATAAAAAAATTCAATTAAAATCAATTATT

            *          *      
        554 GGATTATAAAATCATTTA
         64 AGATTATAAAACCATTTA

        572 GANNNNNNNN


Statistics
Matches: 201,  Mismatches: 45, Indels: 13
        0.78            0.17        0.05

Matches are distributed among these distances:
 169    3  0.01
 170  112  0.56
 171   86  0.43

ACGTcount: A:0.37, C:0.10, G:0.12, T:0.35


Consensus pattern (168 bp):   
TAGACATTCAATTATAGTCTGTTTTAATGAAAATATAAAAAAATTCAATTAAAATCAATTATTAG
ATTATAAAACCATTTAAAAAGGTAATAAGGCTTTTGAAGGAATGGGAGGCTATAAATAGACGTTT
CTTGACAATGAATGCTTTTTTCTTCACTTCTCTCAAGG
Done.