Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398478.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1774.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3176
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32

Warning! 30 characters in sequence are not A, C, G, or T


Found at i:833 original size:94 final size:94

Alignment explanation


    Indices: 672--857  Score: 273
    Period size: 94  Copynumber: 2.0  Consensus size: 94

        662 TACCGCTTGT

                             *   *         *                       *         
        672 GAAGCTGCTTTAGCTTATGACGAAGCTGCCACGACAATGTATGGTGAAAATGCCATACTGAATAT
          1 GAAGCTGCTTTAGCTTACGACAAAGCTGCCAAGACAATGTATGGTGAAAATGCCACACTGAATAT

                                         
        737 GCCTCAGTCAAAATCCGAAGATCACACGG
         66 GCCTCAGTCAAAATCCGAAGATCACACGG

                            *           *     **    *            *           
        766 GAAGCTGCTTTAGCTTGCGACAAAGCTGTCAAGATGATGTGTGGTGAAAATGCGACACTGAATAT
          1 GAAGCTGCTTTAGCTTACGACAAAGCTGCCAAGACAATGTATGGTGAAAATGCCACACTGAATAT

                *                      
        831 GCCTGAGTCAAAATCCGAAGATCACAC
         66 GCCTCAGTCAAAATCCGAAGATCACAC

        858 AGATAATAGT


Statistics
Matches: 81,  Mismatches: 11, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  94   81  1.00

ACGTcount: A:0.33, C:0.21, G:0.24, T:0.23


Consensus pattern (94 bp):   
GAAGCTGCTTTAGCTTACGACAAAGCTGCCAAGACAATGTATGGTGAAAATGCCACACTGAATAT
GCCTCAGTCAAAATCCGAAGATCACACGG
Done.