genome.fa.s124.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397377.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_567.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33966

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1634--2013	171	2.2	172	80	2	415	35	12	12	40	1.80
4059--4523	171	2.7	167	77	11	460	41	11	11	35	1.77
6268--6675	171	2.4	163	79	8	379	37	12	12	32	1.82
7277--7679	170	2.4	161	78	13	370	36	12	15	33	1.85
12362--12406	13	3.8	12	75	24	51	46	26	0	26	1.53
12361--12406	22	2.1	22	95	0	83	45	28	0	26	1.54
15549--15594	21	2.3	19	82	17	58	67	0	23	8	1.18
17015--18889	171	11.0	168	74	6	898	38	12	12	32	1.81
17973--18886	341	2.7	333	79	7	881	39	13	12	33	1.82
19009--19391	197	1.9	197	85	1	516	38	13	12	35	1.83
19206--22275	341	9.0	340	73	6	1558	38	12	12	33	1.81
19206--20987	513	3.5	505	76	7	1297	39	12	12	33	1.81
19429--22452	171	17.7	170	72	5	1635	37	12	12	33	1.81
24687--25018	168	2.0	170	83	3	420	39	13	12	34	1.83
25119--25509	170	2.3	170	82	4	448	40	8	15	36	1.77
25708--26513	170	4.7	171	75	3	468	38	12	11	34	1.79
25668--26847	342	3.5	339	75	6	865	37	11	12	34	1.80
29659--29985	171	1.9	171	82	8	416	35	15	15	33	1.89
30095--30424	171	2.0	161	80	10	371	39	11	10	35	1.77
30601--32024	171	8.3	171	71	6	697	37	11	12	35	1.80
32727--33059	169	2.0	169	82	8	410	36	12	13	38	1.82
32930--32969	20	2.0	21	85	5	55	12	25	15	47	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33390--33700	171	1.9	161	83	2	320	34	12	13	36	1.82

Tables:   1

The End!