Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398494.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1789.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 693

Length: 1155
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.27

Warning! 153 characters in sequence are not A, C, G, or T


Found at i:812 original size:19 final size:20

Alignment explanation


    Indices: 788--827  Score: 57
    Period size: 19  Copynumber: 2.0  Consensus size: 20

        778 GCCAAATCTA

                                 
        788 AGAACTTGAAA-ATTTA-ACC
          1 AGAACTT-AAACATTTAGACC

                                
        807 AGAACTTAAACATTTAGACC
          1 AGAACTTAAACATTTAGACC

             
        827 A
          1 A

        828 TGTACAACTA


Statistics
Matches: 19,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  18    3  0.16
  19   12  0.63
  20    4  0.21

ACGTcount: A:0.47, C:0.17, G:0.10, T:0.25


Consensus pattern (20 bp):   
AGAACTTAAACATTTAGACC
Done.