Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398510.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1803.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 754

Length: 1258
ACGTcount: A:0.15, C:0.06, G:0.05, T:0.15

Warning! 743 characters in sequence are not A, C, G, or T


Found at i:1218 original size:21 final size:21

Alignment explanation


    Indices: 1165--1223  Score: 75
    Period size: 21  Copynumber: 2.8  Consensus size: 21

       1155 TGAAGCATGT

                         *   *   
       1165 AGAAAAGGCCATTCATATAGA
          1 AGAAAAGGCCATTTATACAGA

                                  
       1186 A-AAAAGGGCCATTTATACAGA
          1 AGAAAA-GGCCATTTATACAGA

                   *         
       1207 AGAAAAGTCCATTTATA
          1 AGAAAAGGCCATTTATA

       1224 GAGCCATCCA


Statistics
Matches: 33,  Mismatches: 3, Indels: 4
        0.82            0.08        0.10

Matches are distributed among these distances:
  20    4  0.12
  21   25  0.76
  22    4  0.12

ACGTcount: A:0.47, C:0.14, G:0.17, T:0.22


Consensus pattern (21 bp):   
AGAAAAGGCCATTTATACAGA
Done.