Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398543.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1835.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 667

Length: 1113
ACGTcount: A:0.24, C:0.05, G:0.07, T:0.24

Warning! 435 characters in sequence are not A, C, G, or T


Found at i:21 original size:15 final size:15

Alignment explanation


    Indices: 1--44  Score: 79
    Period size: 15  Copynumber: 2.9  Consensus size: 15

                           
          1 AATGTGATTACAAGT
          1 AATGTGATTACAAGT

                     *     
         16 AATGTGATTGCAAGT
          1 AATGTGATTACAAGT

                          
         31 AATGTGATTACAAG
          1 AATGTGATTACAAG

         45 GAAAATAACA


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   27  1.00

ACGTcount: A:0.39, C:0.07, G:0.23, T:0.32


Consensus pattern (15 bp):   
AATGTGATTACAAGT

Found at i:163 original size:20 final size:20

Alignment explanation


    Indices: 134--199  Score: 55
    Period size: 20  Copynumber: 3.2  Consensus size: 20

        124 TACAATTACT

                           *     
        134 TTATTGAAAATATAATTTTAA
          1 TTATT-AAAATATAACTTTAA

                          *  *   
        155 TT-TTCAAAAT-TACCTCTAA
          1 TTATT-AAAATATAACTTTAA

                          *     
        174 TTATTAAAATATAAGTTTAA
          1 TTATTAAAATATAACTTTAA

                  
        194 TATATT
          1 T-TATT

        200 TATATTTTTT


Statistics
Matches: 35,  Mismatches: 7, Indels: 6
        0.73            0.15        0.12

Matches are distributed among these distances:
  19   13  0.37
  20   16  0.46
  21    6  0.17

ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47


Consensus pattern (20 bp):   
TTATTAAAATATAACTTTAA
Done.