Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398550.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1842.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3497
ACGTcount: A:0.23, C:0.09, G:0.07, T:0.23

Warning! 1337 characters in sequence are not A, C, G, or T


Found at i:2740 original size:171 final size:161

Alignment explanation


    Indices: 2455--2782  Score: 329
    Period size: 171  Copynumber: 2.0  Consensus size: 161

       2445 TTATTACTCG

                                                        *     *              
       2455 CTTTAAATAGTTATATAATCTCATAATTAATTTTAAGTTAATTTTTTTTATATTTTTAGTTAAAA
          1 CTTTAAATAGTTATATAATCTCATAATTAATTTTAAGTTAATTTCTTTTAGATTTTTAGTTAAAA

             **    *       **   *   *      *                                 
       2520 CGGACTATAATTGAATGCCTGCCTTGGAAAATATGTTAAAAAAGCCATTCATTGAGAAAAAAAAT
         66 CAAACTACAATTGAAACCCTACCTAGGAAAAGATGTTAAAAAAGCCATTCATTGAGAAAAAAAAT

                     *     *                         
       2585 CCATTTATAGTCACCTATTCCTTCAAANNNNNNNNNNTCCA
        131 CCATTTATAATCACCCATTCCTTCAAA----------TCCA

                    *   *               *     *                       **     
       2626 CTTTAAATGGTTTTATAATCTCATAATTGATTTTTAGTTGAA-TTCTTTTAGATTTTTCTTTAAA
          1 CTTTAAATAGTTATATAATCTCATAATTAATTTTAAGTT-AATTTCTTTTAGATTTTTAGTTAAA

                                                     *              *        
       2690 ACAAACTACAATTGAAACCCTACCTCAGG-AAAGATG-TAGGAAAAGCCATTCATTTAGAAAAAA
         65 ACAAACTACAATTGAAACCCTACCT-AGGAAAAGATGTTA-AAAAAGCCATTCATTGAGAAAAAA

             *                            
       2753 AGTCCATTTATAATCACCCATTCCTTCAAA
        128 AATCCATTTATAATCACCCATTCCTTCAAA

       2783 AGCCTTATTA


Statistics
Matches: 133,  Mismatches: 21, Indels: 6
        0.83            0.13        0.04

Matches are distributed among these distances:
 170    2  0.02
 171  127  0.95
 172    4  0.03

ACGTcount: A:0.36, C:0.15, G:0.09, T:0.37


Consensus pattern (161 bp):   
CTTTAAATAGTTATATAATCTCATAATTAATTTTAAGTTAATTTCTTTTAGATTTTTAGTTAAAA
CAAACTACAATTGAAACCCTACCTAGGAAAAGATGTTAAAAAAGCCATTCATTGAGAAAAAAAAT
CCATTTATAATCACCCATTCCTTCAAATCCA
Done.