Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398552.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1844.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4063
ACGTcount: A:0.24, C:0.06, G:0.08, T:0.21

Warning! 1655 characters in sequence are not A, C, G, or T


Found at i:1226 original size:172 final size:168

Alignment explanation


    Indices: 1048--1402  Score: 392
    Period size: 172  Copynumber: 2.1  Consensus size: 168

       1038 NNNNNNNNNT

                    *      *       *        *           **               *   
       1048 ATTTAAAGTAAGTAATAAAGCTTTTGAAGGAATGA-AAAACTATGCATGGACTTTTCTTACTAAT
          1 ATTTAAAGCAAGTAACAAAGCTTCTGAAGGAAAGAGAAAA-TATAAATGGACTTTTCTTACAAAT

            *   ***       *  *      *                                        
       1112 GAATTCTTTTTTATTCATGTTTCTGAAGGAAAACATTCAATTATAGTCTATTTTAA-GTAAAAAT
         65 AAATGAGTTTTTATACAGGTTTCTCAAGGAAAACATTCAATTATAGTCTATTTTAATG-AAAAAT

                                                         
       1176 GTAAAAAAAATTGT-ACTTAAAATCAATTATGAGATTATAAAACC
        129 G---AAAAAATT-TAACTT-AAATCAATTATGAGATTATAAAACC

                   *          *                  *                 *  *      
       1220 ATTTAAAACAAGTAACAAGGCTTCTGAAGGAAAGAGAGAATATAAATGGACTTTTTTTTCAAATA
          1 ATTTAAAGCAAGTAACAAAGCTTCTGAAGGAAAGAGAAAATATAAATGGACTTTTCTTACAAATA

                       *                *  *    *           *         *      
       1285 AATGAGTTTTTCTACAGGTTTCTCAAGGCAAGCATTTAATTATAGTCTGTTTTAATGAGAAATGA
         66 AATGAGTTTTTATACAGGTTTCTCAAGGAAAACATTCAATTATAGTCTATTTTAATGAAAAATGA

                                                  
       1350 AAAAATTTAACTTAAATCAATTATGAGATTATAAAACC
        131 AAAAATTTAACTTAAATCAATTATGAGATTATAAAACC

                     *     
       1388 ATTTAAAGCGAGTAA
          1 ATTTAAAGCAAGTAA

       1403 NNNNNNNNNN


Statistics
Matches: 153,  Mismatches: 27, Indels: 10
        0.81            0.14        0.05

Matches are distributed among these distances:
 168   39  0.25
 169   12  0.08
 172   98  0.64
 173    4  0.03

ACGTcount: A:0.42, C:0.10, G:0.14, T:0.35


Consensus pattern (168 bp):   
ATTTAAAGCAAGTAACAAAGCTTCTGAAGGAAAGAGAAAATATAAATGGACTTTTCTTACAAATA
AATGAGTTTTTATACAGGTTTCTCAAGGAAAACATTCAATTATAGTCTATTTTAATGAAAAATGA
AAAAATTTAACTTAAATCAATTATGAGATTATAAAACC
Done.