Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397266.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_20.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7441454
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 92215 characters in sequence are not A, C, G, or T
File 1 of 18
Found at i:1004 original size:170 final size:169
Alignment explanation
Indices: 82--3686 Score: 2568
Period size: 171 Copynumber: 21.2 Consensus size: 169
72 TGTGAAGTGG
* * * * *
82 AAGCCATCCATTGACAAGAAAAGTCCATTTTTGGTCAATCATGCCTTCGAAAGCTTTATTACTCA
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* * * ***
147 CTTTAAAT-GATTTTTTAAATTCATAATTGATTTTAAGTTGAATTTTCTTACTATTTTGGGTAAA
66 CTTTAAATAG-TTTTAT-AATTCATAATTGATTTTAAGTTGAATTTT-TTTCTTTTTTTTATAAA
* *
211 ACAGATTGTAATTGAATGTTTGCCCTT-AGAAATGTG-AGACAA
128 ACAGATTATAATTGAATGTTTG-CCTTAAGAAACGTGAAG-CAA
* * * * * * * *
253 AAGCCAACCATAGACAAAAAAAGTCCATTTATAGTCACTCATACCTTTGACAGCATTATTACTCA
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* * * * *
318 CTTTTAATAGTTTTATAATTATATAATTGATTTTAAGTTGAATTGTTTT-ATATTTTTAGTTAAA
66 CTTTAAATAGTTTTATAATT-CATAATTGATTTTAAGTTGAATTTTTTTCTTTTTTTTA--TAAA
* * * * * *
382 ACATATTATAATTGATTGTTTGCCTTGAGAAACATAAAGCGA
128 ACAGATTATAATTGAATGTTTGCCTTAAGAAACGTGAAGCAA
* * ** * * * * * * * *
424 ATGCTATGGATTTACAAGAAAAGTTCAGTTATAGTCATTCAGGCCTTTGAAAGCTTTATTACTCA
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* * * * ** * **
489 ATTTAAATAGTTTTATAATCTTAAAATTGATTTTAAGTTGAATCTTTTTAATATTTTGGTAAACA
66 CTTTAAATAGTTTTATAAT-TCATAATTGATTTTAAGTTGAATTTTTTTCTTTTTTTTATAAA-A
* * *
554 AAGATTATAATTGAATGTTTGCCTTAGGAAACGTGAAGCGA
129 CAGATTATAATTGAATGTTTGCCTTAAGAAACGTGAAGCAA
* * * * * ** *
595 AAGCCATCCATTGCCATGAAAAGTTCATTTGTAGTCACTCATACCTTCGAAAATCTTATTACTCA
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* * * * *** * *
660 CTTTAAAGAGTTTTATAATCACATAAATT-ATATTAAGTTGCATTTTTTT-AAGTTTTCATTAAC
66 CTTTAAATAGTTTTATAAT-TCAT-AATTGATTTTAAGTTGAATTTTTTTCTTTTTTTTA-TAAA
* * * * *
723 ATAGATGATAATT-AGATGTTTTCCTTAAGAAACGTTAA-C-C
128 ACAGATTATAATTGA-ATGTTTGCCTTAAGAAACGTGAAGCAA
* * * * * *
763 AAGCCATCCATTGACAAGAAAAGTTCATTCATAGTCAATCATGGCTTTGAAAGCCTTATTACTCA
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* *
828 CTTTAAATGGTTTTATAAATTCAT-ATTGATTGTAAGTTGAATTTTTTTCTTTTTTTTATCAAAA
66 CTTTAAATAGTTTTAT-AATTCATAATTGATTTTAAGTTGAATTTTTTTCTTTTTTTTAT-AAAA
* *** * *
892 CAGATTATAAATGAATGTTTGCCCCGAGAAACATAAAGCAA
129 CAGATTATAATTGAATGTTTGCCTTAAGAAACGTGAAGCAA
* * * * * *
933 AAGCCCTCCATTGACAAGAAAAGTCTATTTACAGTCACTCATTCCTTCGAAAGCATTATTGCTCG
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* * **
998 CTTTAAA-AGGTTTTGTAATTTCATAATTGATTTTAAGTTGAATTTTTTTACATTCTTAGT-TAA
66 CTTTAAATA-GTTTTATAA-TTCATAATTGATTTTAAGTTGAATTTTTTT-C-TTTTTTTTATAA
* * * *
1061 AACAGATTATAATTGAATGTTT-ACTTAGGAAATGTGATGCAA
127 AACAGATTATAATTGAATGTTTGCCTTAAGAAACGTGAAGCAA
* * * * * * *
1103 AAGCTATCCATTAATAAGAAAAGTCCATTTATAGTCACGCATGCTTTCGATAGTCTTATTACTCG
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
** * * *
1168 CTTTAAACGGTTTTGTAATCTCATAATTGATTTTAAGTAT-AATATTTTTACATTTTTTGT-TAA
66 CTTTAAATAGTTTTATAAT-TCATAATTGATTTTAAGT-TGAAT-TTTTTTC-TTTTTTTTATAA
* * * * * *
1231 AACAGATTATAATTGAATGTCTACCTCAATAAACATAAAG-AGA
127 AACAGATTATAATTGAATGTTTGCCTTAAGAAACGTGAAGCA-A
* * *
1274 AAGCCATCCATT-AGCAAAAAAAGTCCATTTATAGTCACTCATTCCTTTGAAA-CCTTTATTACT
1 AAGCCATCCATTGA-CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCC-TTATTACT
* * * * * * **
1337 CGCTTTAAGTAATTTTATAATCTCACAATTGATTTTAAGCTGAATTTTTTTATATTTTTGT-CGA
64 CGCTTTAAATAGTTTTATAAT-TCATAATTGATTTTAAGTTGAATTTTTTTCT-TTTTTTTATAA
* * * * * * **
1401 AATAGATTATACTTGATTGTTT-ACATAAGGAATCAAGAAG-AA
127 AACAGATTATAATTGAATGTTTGCCTTAA-GAAACGTGAAGCAA
* * ** * * ** *
1443 AAGCCATGCATTGATAAGAAAAGTTTATTTATAGTCTCTAAT-AATTCAAAAGCCTTATTACTCG
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* * ** ** *
1507 ATTTAAATAGTTTTATAATATCATAATTGATTTTAAGTTTAATTTTTTAT-AGTTTTCGATAGAA
66 CTTTAAATAGTTTTATAAT-TCATAATTGATTTTAAGTTGAATTTTTT-TCTTTTTTTTATAAAA
* ** *
1571 CATATTATAATTGAATGTTTGCCTTGGGAAATGTGAAGCAA
129 CAGATTATAATTGAATGTTTGCCTTAAGAAACGTGAAGCAA
* * * * * * * *
1612 AAGCCATCCGTTAACAAGAAAAGTCCATTTATAGCCACTCGTGCCTTCTAAAACCCTATTACTCA
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* * * * **
1677 CTTTACATTA-TTTTATAAATTTATAATTGATTTCAAGTCGAATTTTTTTACTATTTTGGT-TAA
66 CTTTA-AATAGTTTTAT-AATTCATAATTGATTTTAAGTTGAATTTTTTT-CT-TTTTTTTATAA
* * * *
1740 AATAGATTATAATTGAATGTCTAT-CC-TAAGAAATGTAAAACAA
127 AACAGATTATAATTGAATGT-T-TGCCTTAAGAAACGTGAAGCAA
* * * **
1783 AAGCCA-CCTATTGACAAGAAAAGTCTATTTATAGTCAATCATGCCTTTGAAAGTATTATTACTC
1 AAGCCATCC-ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC
* * **
1847 GCTTTAAATAGTTTTATAATATCATAATTGATTTTAAGTTGAATTATTTTGCATTCTTGGT-TAA
65 GCTTTAAATAGTTTTATAAT-TCATAATTGATTTTAAGTTGAATT-TTTTTC-TTTTTTTTATAA
* *
1911 AATAGATTATAATTGAATGTCTT--CTAAAGAAACGT---G---
127 AACAGATTATAATTGAATGT-TTGCCTTAAGAAACGTGAAGCAA
** * * *
1947 AAGCCATCCATTGGTAAGAAAAGTCCATTTATAGTCACCCATG-CTATCGAAAG-CTTTTCTAGT
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT-TCGAAAGCCTTAT-TACT
* * * **
2010 TGCTTTAAATAGTTTTATAATCCAATAATTGATTTTAGGTTGAATTTTTTTACATTTTTGGT-TA
64 CGCTTTAAATAGTTTTATAATTC-ATAATTGATTTTAAGTTGAATTTTTTT-C-TTTTTTTTATA
* * * * * * *
2074 AAACAAATTATAATTGAATATTTACCTCAAAAAATGTGAAGAAA
126 AAACAGATTATAATTGAATGTTTGCCTTAAGAAACGTGAAGCAA
* * * * * * * * *
2118 AAGCGATCCATTGGCAAGAGATGTCCATTTATAGCCACTCATTCCTTCAAAAAGCCTTATTAGTT
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC-GAAAGCCTTATTACTC
* * * *
2183 GCTTTAAAT-GCTTTTATAATCTCATAGTTCATTTTAAGTTGAATTTTTTTATTTTTTTCATTAA
65 GCTTTAAATAG-TTTTATAAT-TCATAATTGATTTTAAGTTGAATTTTTTTCTTTTTTTTA-TAA
* * * * * *
2247 AATAGATCATAGTTGATTGTTTGCCTCAAGAAACGTGAAGTAA
127 AACAGATTATAATTGAATGTTTGCCTTAAGAAACGTGAAGCAA
* * ** * * *
2290 AAGCCATGCATTGACAAGAAAAGTTCATTTATAGTCTTTTATACCTTCGAAAGTCTTATTACTCG
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* * * ** * * * *
2355 GTTTAAATGGTTTTATATTCTCATAATTCTTTTTAAGTTGAAGTTTTTT-ATATTTTTAGAAAAG
66 CTTTAAATAGTTTTATAAT-TCATAATTGATTTTAAGTTGAATTTTTTTCTTTTTTTTA-TAAA-
* * * *
2419 ACAGATTATAATTAAATGTTTGCCTTAGGAAATGTGAAGC-G
128 ACAGATTATAATTGAATGTTTGCCTTAAGAAACGTGAAGCAA
* ** ** * * *
2460 AAGCCATCCATTGATATA-AAAAGTCCATTTATAGTTGCTTGTGCCTTCGATAGCATTATTTCTC
1 AAGCCATCCATTGACA-AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC
* **
2524 GCTTTTAATAGTTTTATAATTTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTAGT-TAA
65 GCTTTAAATAGTTTTATAA-TTCATAATTGATTTTAAGTTGAATTTTTTT-C-TTTTTTTTATAA
* * * * *
2588 AATAGATTATACTTGATTGTTTGCCTTGAGAAACATGAAGCAA
127 AACAGATTATAATTGAATGTTTGCCTTAAGAAACGTGAAGCAA
* * ** * ** * * * *
2631 ATGCTATGGATTTACAAGAAAAGTTTAATTATAGTCACTCATGCCTTTGAAAGCTTTATTAGTCG
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* * * * * ** * **
2696 GTTTAAATAGTTTTATAATCTTAAAATTGATTTTAAGTTAAATCTTTTTAATATTTTGGTAATCA
66 CTTTAAATAGTTTTATAAT-TCATAATTGATTTTAAGTTGAATTTTTTTCTTTTTTTTATAA--A
*
2761 A-AGATTATAATTGAATGTTTACCTT-AGAAAACGTGAAGCAA
128 ACAGATTATAATTGAATGTTTGCCTTAAG-AAACGTGAAGCAA
* ** * * * * *
2802 AAGCCATCAATTCCCACGAAAAGTCCATTTGTAGTCACTCATGCCTTTGAAAACCTTATTACTCA
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* ** **
2867 CTTTAAATAGTTTTATAA-TCATATAAATT-ATATTAAGTTGAATTTTTTTC-AGTTTCCATTAA
66 CTTTAAATAGTTTTATAATTC--AT-AATTGATTTTAAGTTGAATTTTTTTCTTTTTTTTA-TAA
* ** * *
2929 AATAGATTAT-ATT-AGATGTTTAACTTAAGAAACATGAA-C-C
127 AACAGATTATAATTGA-ATGTTTGCCTTAAGAAACGTGAAGCAA
* * * * * *
2969 AAGCCATCCATTGACAAGAAAAGTTCATTCATAGTCAATCATGGCTTTGAAAGCCCTATTACTCG
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* * *
3034 CTTTAAATGGTTTTATAAATTTATAATTGATTATAAGTTGAATTTTTTTAC-TTTTTTTATCAAA
66 CTTTAAATAGTTTTAT-AATTCATAATTGATTTTAAGTTGAATTTTTTT-CTTTTTTTTAT-AAA
* * ** * *
3098 ACAGATTATAAATGAATGTCTGCCCCAAGAAACATAAAGCAA
128 ACAGATTATAATTGAATGTTTGCCTTAAGAAACGTGAAGCAA
* * * *** *
3140 AAGTCATCCATTGACAAGAAAAGTCTATTTACAGTCACTCATTTTTTCGAAAGCATTATTACTCG
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* * * * **
3205 CTTTAAAAACTTTTATAATTTCATAATTGATTTTAAATTG-ATTTTTTTAACATTCTTGGT-TAA
66 CTTTAAATAGTTTTATAA-TTCATAATTGATTTTAAGTTGAATTTTTTT--C-TTTTTTTTATAA
* * ** *
3268 AGCAGATTATAATTGAATGTTT-ACTTGGGAAACATGACA-CAA
127 AACAGATTATAATTGAATGTTTGCCTTAAGAAACGTGA-AGCAA
* * * * * *
3310 AAGCCATCCATTAAAAAAAAAAGTCCATTTATAATCACTCATGCTTTCGAAAGCCTTATTACACG
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* * * **
3375 CATTAAACT-GTTTTATAATCTCATAATTGATTTTAAGTAGAATATTTTTACATTTTTAGT-TAA
66 CTTTAAA-TAGTTTTATAAT-TCATAATTGATTTTAAGTTGAAT-TTTTTTC-TTTTTTTTATAA
* * * * * **
3438 AATAGATTATAATTTAATGTCTACCTTAAGAAACAT-AAAAAA
127 AACAGATTATAATTGAATGTTTGCCTTAAGAAACGTGAAGCAA
* ** * * * ** * *
3480 AAGCCACCCATTGGTAAGAAAAGTCCATTCATAGTCTCTCATTCCTTCGAAAGTTTTTTTACTTG
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* * * * * *
3545 CTTTAAGTGGTTTTATGATCTCATAATTGATTTTAAGCTGAATTTTTTTATATTTTTTATCAAAA
66 CTTTAAATAGTTTTATAAT-TCATAATTGATTTTAAGTTGAATTTTTTTCTTTTTTTTAT-AAAA
* * * * * *
3610 CAGATTATACTTGATTGTTT--ATGTAAGGAATCATAAAGCAA
129 CAGATTATAATTGAATGTTTGCCT-TAA-GAAACGTGAAGCAA
* * * **
3651 AAGCCATGCATTGATAAGAAACGTTTATTTATAGTC
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTC
3687 TCTAATTAGT
Statistics
Matches: 2705, Mismatches: 607, Indels: 244
0.76 0.17 0.07
Matches are distributed among these distances:
163 12 0.00
164 114 0.04
165 11 0.00
166 7 0.00
167 111 0.04
168 214 0.08
169 151 0.06
170 773 0.29
171 1126 0.42
172 167 0.06
173 19 0.01
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (169 bp):
AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
CTTTAAATAGTTTTATAATTCATAATTGATTTTAAGTTGAATTTTTTTCTTTTTTTTATAAAACA
GATTATAATTGAATGTTTGCCTTAAGAAACGTGAAGCAA
Found at i:3654 original size:341 final size:340
Alignment explanation
Indices: 82--3686 Score: 2745
Period size: 341 Copynumber: 10.6 Consensus size: 340
72 TGTGAAGTGG
* * * * *
82 AAGCCATCCATTGACAAGAAAAGTCCATTTTTGGTCAATCATGCCTTCGAAAGCTTTATTACTCA
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* * ***
147 CTTTAAAT-GATTTTTTAAAT-TCATAATTGATTTTAAGTTGAATTTTCTTAC-TATTTTGGGTA
66 CTTTAAATAG-TTTTAT-AATCTCATAATTGATTTTAAGTTGAATTTTTTTACAT-TTTTTATTA
* ** * ** * * * *
209 AAACAGATTGTAATTGAATGTTTGCCCTTAGAAATGT-GAGACAAAAGCCAACCATAGACAAAAA
128 AAACAGATTATAATTGAATGTTT-ATCTAAGAAACATAAAG-CAAAAGCCATCCATTGACAAGAA
* * * * *
273 AAGTCCATTTATAGTCACTCATACCTTT-GACAGCATTATTACTCACTTTTAATAGTTTTATAAT
191 AAGTCCATTTATAGTCACTCAT-GCTTTCGAAAGCCTTATTACTCGCTTTAAATAGTTTTATAAT
* * * * *
337 -TATATAATTGATTTTAAGTTGAATTGTTTTATATTTTTAGTTAAAACATATTATAATTGATTGT
255 CT-CATAATTGATTTTAAGTTGAATTTTTTTACATTTTTAGTTAAAACAGATTATAATTGAATGT
* * * **
401 TTGCCTTGAGAAACATAAAGCGA
319 TTACCTTAAGAAACGTAAA-AAA
* * ** * * * * * * * *
424 ATGCTATGGATTTACAAGAAAAGTTCAGTTATAGTCATTCAGGCCTTTGAAAGCTTTATTACTCA
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* * * * * **
489 ATTTAAATAGTTTTATAATCTTAAAATTGATTTTAAGTTGAATCTTTTTA-ATATTTTGGTAAAC
66 CTTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTTATTAAA-
* ** * * * * * *
553 AAAGATTATAATTGAATGTTTGCCTTAGGAAACGTGAAGCGAAAGCCATCCATTGCCATGAAAAG
130 ACAGATTATAATTGAATGTTTATC-TAAGAAACATAAAGCAAAAGCCATCCATTGACAAGAAAAG
* * * * ** * * *
618 TTCATTTGTAGTCACTCATACCTTCGAAAATCTTATTACTCACTTTAAAGAGTTTTATAATCACA
194 TCCATTTATAGTCACTCATGCTTTCGAAAGCCTTATTACTCGCTTTAAATAGTTTTATAATCTCA
* * * * * *
683 TAAATT-ATATTAAGTTGCATTTTTTTA-AGTTTTCA-TTAACATAGATGATAATT-AGATGTTT
259 T-AATTGATTTTAAGTTGAATTTTTTTACA-TTTTTAGTTAAAACAGATTATAATTGA-ATGTTT
* * **
744 TCCTTAAGAAACGT-TAACC
321 ACCTTAAGAAACGTAAAAAA
* * * * * *
763 AAGCCATCCATTGACAAGAAAAGTTCATTCATAGTCAATCATGGCTTTGAAAGCCTTATTACTCA
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* * * *
828 CTTTAAATGGTTTTATAAAT-TCAT-ATTGATTGTAAGTTGAATTTTTTT-CTTTTTTTTATCAA
66 CTTTAAATAGTTTTAT-AATCTCATAATTGATTTTAAGTTGAATTTTTTTAC-ATTTTTTATTAA
* ** ** *
890 AACAGATTATAAATGAATGTTTGCCCCGAGAAACATAAAGCAAAAGCCCTCCATTGACAAGAAAA
129 AACAGATTATAATTGAATGTTT-ATCTAAGAAACATAAAGCAAAAGCCATCCATTGACAAGAAAA
* * * * * * * *
955 GTCTATTTACAGTCACTCATTCCTTCGAAAGCATTATTGCTCGCTTTAAA-AGGTTTTGTAATTT
193 GTCCATTTATAGTCACTCATGCTTTCGAAAGCCTTATTACTCGCTTTAAATA-GTTTTATAATCT
*
1019 CATAATTGATTTTAAGTTGAATTTTTTTACATTCTTAGTTAAAACAGATTATAATTGAATGTTTA
257 CATAATTGATTTTAAGTTGAATTTTTTTACATTTTTAGTTAAAACAGATTATAATTGAATGTTTA
* * ***
1084 -CTTAGGAAATGTGATGCAA
322 CCTTAAGAAACGT-AAAAAA
* * * * * * *
1103 AAGCTATCCATTAATAAGAAAAGTCCATTTATAGTCACGCATGCTTTCGATAGTCTTATTACTCG
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
** * * *
1168 CTTTAAACGGTTTTGTAATCTCATAATTGATTTTAAGTAT-AATATTTTTACATTTTTTGTTAAA
66 CTTTAAATAGTTTTATAATCTCATAATTGATTTTAAGT-TGAATTTTTTTACATTTTTTATTAAA
* * * *
1232 ACAGATTATAATTGAATGTCTACCTCAATAAACATAAAG-AGAAAGCCATCCATT-AGCAAAAAA
130 ACAGATTATAATTGAATGTTTATCT-AAGAAACATAAAGCA-AAAGCCATCCATTGA-CAAGAAA
* * *
1295 AGTCCATTTATAGTCACTCATTCCTTT-GAAA-CCTTTATTACTCGCTTTAAGTAATTTTATAAT
192 AGTCCATTTATAGTCACTCA-TGCTTTCGAAAGCC-TTATTACTCGCTTTAAATAGTTTTATAAT
* * * ** * * *
1358 CTCACAATTGATTTTAAGCTGAATTTTTTTATATTTTT-GTCGAAATAGATTATACTTGATTGTT
255 CTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTAGTTAAAACAGATTATAATTGAATGTT
* *
1422 TA-CATAAGGAA--TCAAGAAGAA
320 TACCTTAAGAAACGT-AA-AA-AA
* * ** * * ** *
1443 AAGCCATGCATTGATAAGAAAAGTTTATTTATAGTCTCTAAT-AATTCAAAAGCCTTATTACTCG
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* * * * ** *
1507 ATTTAAATAGTTTTATAATATCATAATTGATTTTAAGTTTAATTTTTTATA-GTTTTCGA-TAGA
66 CTTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTT-TACATTTTTTATTAAA
* ** ** ** * * *
1570 ACATATTATAATTGAATGTTTGCCTTGGGAAATGTGAAGCAAAAGCCATCCGTTAACAAGAAAAG
130 ACAGATTATAATTGAATGTTTATC-TAAGAAACATAAAGCAAAAGCCATCCATTGACAAGAAAAG
* * * * * * * *
1635 TCCATTTATAGCCACTCGTGCCTTCTAAAACCCTATTACTCACTTTACATTA-TTTTATAAAT-T
194 TCCATTTATAGTCACTCATGCTTTCGAAAGCCTTATTACTCGCTTTA-AATAGTTTTAT-AATCT
* * * * * *
1698 TATAATTGATTTCAAGTCGAATTTTTTTAC-TATTTTGGTTAAAATAGATTATAATTGAATGTCT
257 CATAATTGATTTTAAGTTGAATTTTTTTACAT-TTTTAGTTAAAACAGATTATAATTGAATGTTT
*
1762 ATCC-TAAGAAATGTAAAACAA
321 A-CCTTAAGAAACGTAAAA-AA
* * * **
1783 AAGCCA-CCTATTGACAAGAAAAGTCTATTTATAGTCAATCATGCCTTTGAAAGTATTATTACTC
1 AAGCCATCC-ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC
* * * * **
1847 GCTTTAAATAGTTTTATAATATCATAATTGATTTTAAGTTGAATTATTTTGCATTCTTGGTTAAA
65 GCTTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTTATTAAA
* * * **
1912 ATAGATTATAATTGAATGTCT-TCTAAAGAAACGT---G---AAGCCATCCATTGGTAAGAAAAG
130 ACAGATTATAATTGAATGTTTATCT-AAGAAACATAAAGCAAAAGCCATCCATTGACAAGAAAAG
* * * * *
1970 TCCATTTATAGTCACCCATGCTATCGAAAG-CTTTTCTAGTTGCTTTAAATAGTTTTATAATC-C
194 TCCATTTATAGTCACTCATGCTTTCGAAAGCCTTAT-TACTCGCTTTAAATAGTTTTATAATCTC
* * * *
2033 AATAATTGATTTTAGGTTGAATTTTTTTACATTTTTGGTTAAAACAAATTATAATTGAATATTTA
258 -ATAATTGATTTTAAGTTGAATTTTTTTACATTTTTAGTTAAAACAGATTATAATTGAATGTTTA
* * * *
2098 CCTCAAAAAATGTGAAGAAA
322 CCTTAAGAAACGT-AAAAAA
* * * * * * * * *
2118 AAGCGATCCATTGGCAAGAGATGTCCATTTATAGCCACTCATTCCTTCAAAAAGCCTTATTAGTT
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC-GAAAGCCTTATTACTC
* * *
2183 GCTTTAAAT-GCTTTTATAATCTCATAGTTCATTTTAAGTTGAATTTTTTTA-TTTTTTTCATTA
65 GCTTTAAATAG-TTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTT-ATTA
* * * * ** * * * *
2246 AAATAGATCATAGTTGATTGTTTGCCTCAAGAAACGTGAAGTAAAAGCCATGCATTGACAAGAAA
128 AAACAGATTATAATTGAATGTTTATCT-AAGAAACATAAAGCAAAAGCCATCCATTGACAAGAAA
* ** * * * * * * *
2311 AGTTCATTTATAGTCTTTTATACCTTCGAAAGTCTTATTACTCGGTTTAAATGGTTTTATATTCT
192 AGTCCATTTATAGTCACTCATGCTTTCGAAAGCCTTATTACTCGCTTTAAATAGTTTTATAATCT
** * * * *
2376 CATAATTCTTTTTAAGTTGAAGTTTTTTATATTTTTAG-AAAAGACAGATTATAATTAAATGTTT
257 CATAATTGATTTTAAGTTGAATTTTTTTACATTTTTAGTTAAA-ACAGATTATAATTGAATGTTT
* * * * ***
2440 GCCTTAGGAAATGTGAAGCG
321 ACCTTAAGAAACGTAAAAAA
* ** ** * * *
2460 AAGCCATCCATTGATATA-AAAAGTCCATTTATAGTTGCTTGTGCCTTCGATAGCATTATTTCTC
1 AAGCCATCCATTGACA-AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC
* *
2524 GCTTTTAATAGTTTTATAATTTCATAATTGATTTTAAGTTGAATTTTTTTACA-TTTTTAGTTAA
65 GCTTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTTA-TTAA
* * * ** * * * * ** *
2588 AATAGATTATACTTGATTGTTTGCCTTGAGAAACATGAAGCAAATGCTATGGATTTACAAGAAAA
129 AACAGATTATAATTGAATGTTTATC-TAAGAAACATAAAGCAAAAGCCATCCATTGACAAGAAAA
** * * * *
2653 GTTTAATTATAGTCACTCATGCCTTT-GAAAGCTTTATTAGTCGGTTTAAATAGTTTTATAATCT
193 GTCCATTTATAGTCACTCATG-CTTTCGAAAGCCTTATTACTCGCTTTAAATAGTTTTATAATCT
* * * * *
2717 TAAAATTGATTTTAAGTTAAATCTTTTTA-ATATTTT-GGTAATCAA-AGATTATAATTGAATGT
257 CATAATTGATTTTAAGTTGAATTTTTTTACAT-TTTTAGTTAA--AACAGATTATAATTGAATGT
**
2779 TTACCTT-AGAAAACGTGAAGCAA
319 TTACCTTAAG-AAACGT-AAAAAA
* ** * * * * *
2802 AAGCCATCAATTCCCACGAAAAGTCCATTTGTAGTCACTCATGCCTTTGAAAACCTTATTACTCA
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* * **
2867 CTTTAAATAGTTTTATAATCAT-ATAAATT-ATATTAAGTTGAATTTTTTT-CAGTTTCCATTAA
66 CTTTAAATAGTTTTATAATC-TCAT-AATTGATTTTAAGTTGAATTTTTTTACATTTTTTATTAA
* * * *
2929 AATAGATTAT-ATT-AGATGTTTAACTTAAGAAACATGAA-C-CAAGCCATCCATTGACAAGAAA
129 AACAGATTATAATTGA-ATGTTTATC-TAAGAAACATAAAGCAAAAGCCATCCATTGACAAGAAA
* * * * *
2990 AGTTCATTCATAGTCAATCATGGCTTT-GAAAGCCCTATTACTCGCTTTAAATGGTTTTATAAAT
192 AGTCCATTTATAGTCACTCAT-GCTTTCGAAAGCCTTATTACTCGCTTTAAATAGTTTTAT-AAT
* * * * *
3054 -TTATAATTGATTATAAGTTGAATTTTTTTACTTTTTTTA-TCAAAACAGATTATAAATGAATGT
255 CTCATAATTGATTTTAAGTTGAATTTTTTTAC-ATTTTTAGTTAAAACAGATTATAATTGAATGT
* * ** * *
3117 CTGCCCCAAGAAACATAAAGCAA
319 TTACCTTAAGAAACGTAAA-AAA
* * * *** *
3140 AAGTCATCCATTGACAAGAAAAGTCTATTTACAGTCACTCATTTTTTCGAAAGCATTATTACTCG
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* * * * * **
3205 CTTTAAAAACTTTTATAATTTCATAATTGATTTTAAATTG-ATTTTTTTAACATTCTTGGTTAAA
66 CTTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTT-ACATTTTTTATTAAA
* ** * * * *
3269 GCAGATTATAATTGAATGTTTA-CTTGGGAAACATGACA-CAAAAGCCATCCATTAAAAAAAAAA
130 ACAGATTATAATTGAATGTTTATC-TAAGAAACAT-AAAGCAAAAGCCATCCATTGACAAGAAAA
* * *
3332 GTCCATTTATAATCACTCATGCTTTCGAAAGCCTTATTACACGCATTAAACT-GTTTTATAATCT
193 GTCCATTTATAGTCACTCATGCTTTCGAAAGCCTTATTACTCGCTTTAAA-TAGTTTTATAATCT
* * * * *
3396 CATAATTGATTTTAAGTAGAATATTTTTACATTTTTAGTTAAAATAGATTATAATTTAATGTCTA
257 CATAATTGATTTTAAGTTGAATTTTTTTACATTTTTAGTTAAAACAGATTATAATTGAATGTTTA
*
3461 CCTTAAGAAACATAAAAAA
322 CCTTAAGAAACGTAAAAAA
* ** * * * ** * *
3480 AAGCCACCCATTGGTAAGAAAAGTCCATTCATAGTCTCTCATTCCTTCGAAAGTTTTTTTACTTG
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* * * * * *
3545 CTTTAAGTGGTTTTATGATCTCATAATTGATTTTAAGCTGAATTTTTTTATATTTTTTATCAAAA
66 CTTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTTATTAAAA
* * * * * * *
3610 CAGATTATACTTGATTGTTTATGTAAGGAATCATAAAGCAAAAGCCATGCATTGATAAGAAACGT
131 CAGATTATAATTGAATGTTTATCTAA-GAAACATAAAGCAAAAGCCATCCATTGACAAGAAAAGT
**
3675 TTATTTATAGTC
195 CCATTTATAGTC
3687 TCTAATTAGT
Statistics
Matches: 2581, Mismatches: 566, Indels: 233
0.76 0.17 0.07
Matches are distributed among these distances:
334 11 0.00
335 162 0.06
336 83 0.03
337 38 0.01
338 474 0.18
339 241 0.09
340 366 0.14
341 688 0.27
342 377 0.15
343 136 0.05
344 5 0.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (340 bp):
AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
CTTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTTATTAAAA
CAGATTATAATTGAATGTTTATCTAAGAAACATAAAGCAAAAGCCATCCATTGACAAGAAAAGTC
CATTTATAGTCACTCATGCTTTCGAAAGCCTTATTACTCGCTTTAAATAGTTTTATAATCTCATA
ATTGATTTTAAGTTGAATTTTTTTACATTTTTAGTTAAAACAGATTATAATTGAATGTTTACCTT
AAGAAACGTAAAAAA
Found at i:4016 original size:171 final size:170
Alignment explanation
Indices: 3695--8292 Score: 1408
Period size: 171 Copynumber: 26.7 Consensus size: 170
3685 TCTCTAATTA
** * * * * * *
3695 GTTTTATAATATCATAATTGATTTTAATTTTAA-TTTTTTACATTTTTGGA-TAGAACATATTAT
1 GTTTTATAACCTCATAATTGATTTTAAGTTGAATTTTTTTATATTTTT-GATTAAAATAGATTAT
* * ** * * ** *
3758 AATTGAATGCTTGCCTTGGGAAACATAAAGCAAAAGTCATCTGTTGACAAGAAAAGTTCATTTAT
65 AATTGAATGTTTACC-TAAGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
* * *
3823 AATCACTCGTGCCTGT-GAAAGCCTTATTAGTCATTTTAAATG
129 AGTCACTCATGCCT-TCGAAAGCCTTATTACTCATTTTAAATG
* * * *
3865 GTTTTATAACCTCATCATTAACTTTAAGTTGAATTTTTTTATATTTTTGATTAAAATAGATTATG
1 GTTTTATAACCTCATAATTGATTTTAAGTTGAATTTTTTTATATTTTTGATTAAAATAGATTATA
* * * * * * *
3930 ATTGCATGTTTACCTCAAGAAACGTGAAGCAAAAGCCATCGACTGACATGAAAAGACCCTTTATA
66 ATTGAATGTTTACCT-AAGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATA
** ** * * *
3995 GTGGCTCACCCCTTCGAAAGCCTTGTTACTCACTTTCAAA-A
130 GTCACTCATGCCTTCGAAAGCCTTATTACTCA-TTTTAAATG
* * * * *
4036 ATTTTATAAGCTCATAAATT-ATTTTAAGTTGAATTTCTTTTA-A-TTATCATTAAAATAGATGA
1 GTTTTATAACCTCAT-AATTGATTTTAAGTTGAATTT-TTTTATATTTTTGATTAAAATAGATTA
* * * * ** * * *
4098 TAATTGGATCTTCACCTCAGGAAACATTG-AGTGAAAGCCATCCATTGACTAGAGAAGTCCACTT
64 TAATTGAATGTTTACCT-AAGAAACA-TGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTT
* * * * ***
4162 ATAGTCAATCATGCCTACAAAAG-CTCTATAACTTGCTTTAAATG
127 ATAGTCACTCATGCCTTCGAAAGCCT-TATTACTCATTTTAAATG
** * * * * * *
4206 GTTTTATAAATTTATAATTGATTATAAGTTGAATTGTTTTACTATTTTAG-GTAAAACAGATTAT
1 GTTTTATAACCTCATAATTGATTTTAAGTTGAATTTTTTTA-TATTTTTGATTAAAATAGATTAT
* * * * * * *
4270 AATTGAATGTCTGCCATAAGAAGA-ATGCAGCAAAAGTCACCCACTGACAACAAAAGTCCATTTA
65 AATTGAATGTTTACC-TAAGAA-ACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTA
* ** *
4334 TAGTCACTCATGCTTTCGAAAGTATTGTTACTC-TCTTTAAATG
128 TAGTCACTCATGCCTTCGAAAGCCTTATTACTCAT-TTTAAATG
* * * * * *
4377 GTTTTATAATCTTATAATTGATTTTGAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATA
1 GTTTTATAACCTCATAATTGATTTTAAGTTGAATTTTTTTATATTTTTGATTAAAATAGATTATA
* * * * * *
4442 ATTGAATGTTTACCTTGAGAAACGTGTAGAAAAAGCCATCCATTGATAAGAAAAATCCATTTATA
66 ATTGAATGTTTACC-TAAGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATA
* * * *
4507 GTTACTCATGCCTTCAAAAGCCTTATTATTTGCA--TAAAATG
130 GTCACTCATGCCTTCGAAAGCCTTATTA-CT-CATTTTAAATG
* * * * * ** *
4548 GTTTTGTAACCTCATAACTGATTTTAAGCTAAATTTTTTTAGA-TTTTGGGTAAAA-AAATTATA
1 GTTTTATAACCTCATAATTGATTTTAAGTTGAATTTTTTTATATTTTTGATTAAAATAGATTATA
* * * * *
4611 ATTGAATGTTTACCATAGGAAACATGAAACGAAAGCCATCCATTGACACGAAGAGTCCATTTATA
66 ATTGAATGTTTACC-TAAGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATA
* * *
4676 GTCACTCATACCTTTGAAAGCCTTATTACTCGTTTTAAATG
130 GTCACTCATGCCTTCGAAAGCCTTATTACTCATTTTAAATG
* * * * *
4717 GTTTTATAATCTCATAATTGATTTTAAGTTGGATTGTTTTAAATTTTTGATTAAAATATATTATA
1 GTTTTATAACCTCATAATTGATTTTAAGTTGAATTTTTTTATATTTTTGATTAAAATAGATTATA
* * ** * * *
4782 ATTGAAAGTCTACCTTGGGAAACATGAAGCAAAAGTCATCCATCGATAAGAAAAGTCCATTTATA
66 ATTGAATGTTTACC-TAAGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATA
* * * ** ******
4847 GTCACTCATACCTTCAAAAGCATTATTACTCGCTTNNNNNN
130 GTCACTCATGCCTTCGAAAGCCTTATTACTCATTTTAAATG
**** * * ** * * * *
4888 NNNNTATAATCTCATAATTGATTTTAGGTCAAATTTTTTTTACATTTCT-ATTTAAAACATATTA
1 GTTTTATAACCTCATAATTGATTTTAAGTTGAA-TTTTTTTATATTTTTGA-TTAAAATAGATTA
* * *
4952 CAATTGAATGTTTACCTTAGGAAACATGAAGCGAAAGCCATCCACTGTGAC-A-AAAAGTCCATT
64 TAATTGAATGTTTACC-TAAGAAACATGAAGCAAAAGCCATCCA-T-TGACAAGAAAAGTCCATT
* * *
5015 TATAGTCGCTCATGCCTTCGAAAGCCTTATT-CTTCACTTTCAATG
126 TATAGTCACTCATGCCTTCGAAAGCCTTATTAC-TCATTTTAAATG
* *
5060 ATTTTATAATCTTACA-AATT-ATTTTAAGTTGAACTTTTATTTA-ATTTTT-ATTAAAATAGAT
1 GTTTTATAA-CCT-CATAATTGATTTTAAGTTGAA-TTTT-TTTATATTTTTGATTAAAATAGAT
* * * * * *
5121 TACAATTGGATGTTTACCTTGAGAAACATGAAGCAAAAGCCATCAATTGACAAGAAAAGCCCACT
62 TATAATTGAATGTTTACC-TAAGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATT
* * * * * *
5186 TATAGTCAATCACGCCTTCGAAAGCCCTGTTACTCACTTTAAACG
126 TATAGTCACTCATGCCTTCGAAAGCCTTATTACTCATTTTAAATG
* * * * * * * ** *
5231 ATTTTATAATCTTATAAATT-ATTTCAATTTGAGTTTTTTT-TGTTGCT-ATTAAAATAGATGAT
1 GTTTTATAACCTCAT-AATTGATTTTAAGTTGAATTTTTTTATATTTTTGATTAAAATAGATTAT
* * ** ** * * * * * *
5293 AATTGGATGTTTTCCTTAAGAAATTTGAAGTGAATGCCATCCATAGACAGGAAAGGTCTATTTGT
65 AATTGAATGTTTACC-TAAGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
* * * * *
5358 AATCACTCTTGCTTTCGAAAGCCTTATAACTCACTTTAAATG
129 AGTCACTCATGCCTTCGAAAGCCTTATTACTCATTTTAAATG
*** * *
5400 GTTTTATAGTTTCATAATTGATTTT-AGATT-AATTTTTTTTTACATTTTTAGA-AAAAATAGAT
1 GTTTTATAACCTCATAATTGATTTTAAG-TTGAA--TTTTTTTATATTTTT-GATTAAAATAGAT
* * * ***********************************************
5462 TTTAATTGAATCTTT-GCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
62 TATAATTGAATGTTTACCTAAGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTT
********************************************
5526 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
127 ATAGTCACTCATGCCTTCGAAAGCCTTATTACTCATTTTAAATG
************************************ * *
5570 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTT-TA-----G-TTAAAACATATTATA
1 GTTTTATAACCTCATAATTGATTTTAAGTTGAATTTTTTTATATTTTTGATTAAAATAGATTATA
* * *** * *
5628 ATTGAATGTTTTCCTAGGAAACGCAAAGCAAAA-CCATCCATTGGCAAGAAAAGTCCGTTTATAG
66 ATTGAATGTTTACCTAAGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
** * ** * * *
5692 TCACTCATGCCTTTAAAAGCCTTATTATTTGTATAAAATT
131 TCACTCATGCCTTCGAAAGCCTTATTACTCATTTTAAATG
* * * * * *** * * *
5732 GTTTTGTAATCTCATAACTGATTTTAAGTTAAATTTTTTTATATTTTAGGCAAAAACAAATTAGA
1 GTTTTATAACCTCATAATTGATTTTAAGTTGAATTTTTTTATATTTTTGATTAAAATAGATTATA
* ** * * * * *
5797 ATTGAATGTCTACCTTGAA-AAATGTGAACCCAAAGTCATCCATTAATAAGAAAAGTCCA-TTAT
66 ATTGAATGTTTACC-T-AAGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
* * *** * *
5860 AGTTACTCATGCCTTCGAAAGCATTATTACTTGCTTAAAATA
129 AGTCACTCATGCCTTCGAAAGCCTTATTACTCATTTTAAATG
* * * * *
5902 GTTTTATAATCTCATAATTGATTTTAAG-TCAATTTTTTTTTACATTTTT-AGCTAAAACAGATT
1 GTTTTATAACCTCATAATTGATTTTAAGTTGAA--TTTTTTTATATTTTTGA-TTAAAATAGATT
* * ** * * *** * * *
5965 ACAATTCAATGTTTGGCTCAAGAAACCTAAAGTTCAAGACATCCATTGACACGAAAAATCCATTT
63 ATAATTGAATGTTTACCT-AAGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTT
* * * * * *
6030 GTAGTCACTCATACCTTCAAAAGCCTTATTACTCACTCTAAACG
127 ATAGTCACTCATGCCTTCGAAAGCCTTATTACTCATTTTAAATG
* * * * *
6074 GTTTTATAATCTTATAAATT-ATTTTAAGTTG-ATTTTTCTT-TAGTTTTCATTAAAATAGATGA
1 GTTTTATAACCTCAT-AATTGATTTTAAGTTGAATTTTT-TTATATTTTTGATTAAAATAGATTA
* * * * * *** **
6136 TAATTGGATGTTATAACTGATTTTAAGTTTAATTTTTACATTATGGTTAAAAAATATTATAATTG
64 TAATTGAATGTT-T-AC-----CTAAG---AA-----ACATGA-AG-CAAAAGCCA-T-CCATTG
* * ** *** * * * **
6201 AATGTTTTCCTAGGAAACGTGAAGCAAAAGTCATTCATTGGC-AAGAAAAGTCCATTTATAATCA
110 -A-------C-AAGAAAAGTCCATTTATAGTCACTCA-TGCCTTCG-AAAG-CC--TTAT--T--
*
6265 ATCATGCATTTCAAA-G
157 A-C-T-CATTTTAAATG
* * ** * * *
6281 CTCGATTACTCGCTTCA-AATGGTTTTATAAATTCATAATTGATTTTAAGTTGAATTTTTTTCT-
1 GT--TTTA-TAACCTCATAA----TTGAT---TT--T-A---A------GTTGAATTTTTTTATA
* * * * ** * *
6344 TTTTTTATCAAAACAGATTATAATTGAATGTCTACCGTGAA-AAATGTGAAGCCAAAGCCATCTA
44 TTTTTGATTAAAATAGATTATAATTGAATGTTTACC-T-AAGAAACATGAAGCAAAAGCCATCCA
* *
6408 TTGACAAGAAAAGTCCATTTATAGTCATTCATGCCTTCGAAAGCAC-TATTACTC-TCTTGAAAT
107 TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGC-CTTATTACTCAT-TTTAAAT
6471 G
170 G
* * ** * * *
6472 ATTTTATAATCTCATAATTGATTTTAAGTCAAATTATTTTATA-TTTTGAATTAAAACATATTAT
1 GTTTTATAACCTCATAATTGATTTTAAGTTGAATTTTTTTATATTTTTG-ATTAAAATAGATTAT
* * * * * * * *
6536 AATTGAATGTTTACCTCAGGAAACGTTAAGCGAAATCTATGCACTGACACA-AAAAGTCCATTTA
65 AATTGAATGTTTACCT-AAGAAACATGAAGCAAAAGCCATCCATTGACA-AGAAAAGTCCATTTA
* * ** *
6600 TAATCGCTCATGCCTTCGAAAGCCTTATTTTTCACTTTAAATG
128 TAGTCACTCATGCCTTCGAAAGCCTTATTACTCATTTTAAATG
* * *
6643 ATTTTATAATCTTACA-AATT-ATTTTAAGTTGAACTTTTTTTCA-A-TTTTCATTAAAATAGAT
1 GTTTTATAA-CCT-CATAATTGATTTTAAGTTGAA-TTTTTTT-ATATTTTTGATTAAAATAGAT
* * * * *
6704 TACAATTGGATGTTTACCTAGAGAAACGTGAAGCAAAAGCCATTCATTGACAAGAAAAG-CCTAC
62 TATAATTGAATGTTTACCTA-AGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCC-AT
* ** **
6768 TTATAGTCAATCATGCCTTCGAAAGCCTTATTACTCGCTTTAAACA
125 TTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCATTTTAAATG
* * * * * * *
6814 ATCTTATAACCTTATAAATT-ATTTCAAGTTGAA-TTTTTT-T-TTGTTGCCATGAAAATAGATG
1 GTTTTATAACCTCAT-AATTGATTTTAAGTTGAATTTTTTTATATTTTTG--ATTAAAATAGATT
* * ** * *
6875 ATAATTGGATGTTTACCTCGAGAAATGTGAAGCGAATA-CCATCCATTGACAAGAAAGGTCCATT
63 ATAATTGAATGTTTACCT-AAGAAACATGAAGC-AAAAGCCATCCATTGACAAGAAAAGTCCATT
* * * * *
6939 TATAGTCACTCCTACTTTCGAAAGCCTTATTACTCACTTTAAATA
126 TATAGTCACTCATGCCTTCGAAAGCCTTATTACTCATTTTAAATG
* *
6984 GTTTTATAATCTCATAATTGATTTT-AGATTG-ATTTTTTTATGTTTTTAGCA--AAAATAGATT
1 GTTTTATAACCTCATAATTGATTTTAAG-TTGAATTTTTTTATATTTTT-G-ATTAAAATAGATT
* * * * * *
7045 ATAATTGAATGTTTTCCTTAGGAAACGTGAAGCAAAAGCCATCCTTTGAC-CGAAAAAGTACATT
63 ATAATTGAATGTTTACC-TAAGAAACATGAAGCAAAAGCCATCCATTGACAAG-AAAAGTCCATT
* ** * ***
7109 TATAGTCACTCATGCCTTTGAAAGAATTATTATTTGCTTTAAATG
126 TATAGTCACTCATGCCTTCGAAAGCCTTATTACTCATTTTAAATG
** * * * * *
7154 GTTTTATAATATCATAATTGATTTTAAGTTTAA--TTTTTACATTTTTGGTTAAAACATATTATA
1 GTTTTATAACCTCATAATTGATTTTAAGTTGAATTTTTTTATATTTTTGATTAAAATAGATTATA
*** * * * * * *
7217 ATTGAAT-TTTTTTTTAGAAATATGAAGCAAAAGCCATTCATTTG-TAAGAAAAATCCAATTATA
66 ATTGAATGTTTACCTAAGAAACATGAAGCAAAAGCCATCCA-TTGACAAGAAAAGTCCATTTATA
* * * *
7280 GTCAATCATGCCTTTC-AAA-CCTCGATCACTCGA-TTCAAATG
130 GTCACTCATGCC-TTCGAAAGCCT-TATTACTC-ATTTTAAATG
** * * * * * *
7321 GTTTTATAAATTTATAATTGATTTTAAGTTAAATTTTTTTACTTTTTTTG-TCAAAACATATTAT
1 GTTTTATAACCTCATAATTGATTTTAAGTTGAATTTTTTTA-TATTTTTGATTAAAATAGATTAT
* * * * *** * * * *
7385 AATTGTATGTCTGCCTTGAGAAATGCGAAGCCAAAGCCATCCATTAATAAGAAAAGTCTATTTAT
65 AATTGAATGTTTACC-TAAGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
* * * ** *
7450 AGTCACTCATGCCTTCAAAAGCATTATTATTCGCTTGAAATG
129 AGTCACTCATGCCTTCGAAAGCCTTATTACTCATTTTAAATG
* * * ** * *
7492 GTTTTATAATCTCATAATTAATTTTAACTCAAATTGTTTTTACATTTTT--TTAAAAACAGATTA
1 GTTTTATAACCTCATAATTGATTTTAAGTTGAATT-TTTTTATATTTTTGATT-AAAATAGATTA
* * * * *** *
7555 CAATTCAATGTTTGCCTCAAGAAACCT-ATAGTGCAAGCCATCCATTGACACA-AAAAGTCTATT
64 TAATTGAATGTTTACCT-AAGAAACATGA-AGCAAAAGCCATCCATTGACA-AGAAAAGTCCATT
* * * *
7618 TGTAGTCACTCATACCTTCGAAAGCCTTATTACTCACTTTAAACG
126 TATAGTCACTCATGCCTTCGAAAGCCTTATTACTCATTTTAAATG
** * * * *
7663 GTTTTATAATATTATAAATT-ATTTTAAGTTG-ATTTTTTTCA-A-TTTTCAGTAAAATAGATGA
1 GTTTTATAACCTCAT-AATTGATTTTAAGTTGAATTTTTTT-ATATTTTTGATTAAAATAGATTA
* * * * ** * ** * **
7724 TAATTGGATGTTTTCCTTAAAAAACGTGAAGTGAATGCCATCTGTTAATTAGAAAAGTCCATTTA
64 TAATTGAATGTTTACC-TAAGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTA
* * ** * *
7789 TTGCCTA-TCATGCCTTCGAAAGCCTTATTACTCGCTTTACATT
128 TAGTC-ACTCATGCCTTCGAAAGCCTTATTACTCATTTTAAATG
** * * *
7832 GTTTTATAAATTTATAATTGATTTCAAGTTGAATTTTTTTACTA-TTTTGGTTAAAATAGATTAT
1 GTTTTATAACCTCATAATTGATTTTAAGTTGAATTTTTTTA-TATTTTTGATTAAAATAGATTAT
** ** * * * *
7896 AATTGAATGTCAACCCTAAGAAATGTAAAGCAAAAGCTACCCATTGACAAGAAAAGTCTATTTAT
65 AATTGAATGTTTA-CCTAAGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
* * *** ** *
7961 AGTTAGTCATGCCTTCGAAAGTAATATTACTCGCTTTAAATA
129 AGTCACTCATGCCTTCGAAAGCCTTATTACTCATTTTAAATG
* ** * * * * *
8003 GCTTTATAATATCATAATTAATTTTAAGTTGAATTGTTTTACATTCTTGCTTAAAATAGATTATA
1 GTTTTATAACCTCATAATTGATTTTAAGTTGAATTTTTTTATATTTTTGATTAAAATAGATTATA
* * * * *
8068 ATTGAATGTCTGCC-AGGGAAACGTGAAGCAAGAGCCATCCATT-ACTAAGAAAAGTCCATTTAT
66 ATTGAATGTTTACCTA-AGAAACATGAAGCAAAAGCCATCCATTGAC-AAGAAAAGTCCATTTAT
* * * ** *
8131 AGTCACTCAT-ACTGTCGAAAGCCTTACTATTCGCTTTAAATA
129 AGTCACTCATGCCT-TCGAAAGCCTTATTACTCATTTTAAATG
* * *
8173 GTTTTATAATCTCATAATTGATTTTAAGTTGAA-TTTTTTATATTTTTGGTTAAAACAGATTATA
1 GTTTTATAACCTCATAATTGATTTTAAGTTGAATTTTTTTATATTTTTGATTAAAATAGATTATA
** * ** * *
8237 ATTGAATGTTTGGCTCAAAAAATGTGAAGAAAAATCCATCCATTTG-CAAGAAAAGT
66 ATTGAATGTTTACCT-AAGAAACATGAAGCAAAAGCCATCCA-TTGACAAGAAAAGT
8293 TTAATTTTTT
Statistics
Matches: 3198, Mismatches: 1010, Indels: 440
0.69 0.22 0.09
Matches are distributed among these distances:
162 25 0.01
163 3 0.00
166 1 0.00
167 88 0.03
168 32 0.01
169 528 0.17
170 713 0.22
171 1313 0.41
172 267 0.08
173 22 0.01
174 4 0.00
176 4 0.00
177 1 0.00
179 3 0.00
180 1 0.00
182 2 0.00
184 4 0.00
185 5 0.00
186 5 0.00
187 1 0.00
188 8 0.00
189 7 0.00
190 6 0.00
191 3 0.00
192 1 0.00
193 1 0.00
195 1 0.00
196 1 0.00
197 18 0.01
198 6 0.00
199 3 0.00
200 8 0.00
201 23 0.01
202 1 0.00
203 1 0.00
205 1 0.00
206 1 0.00
207 3 0.00
208 8 0.00
209 4 0.00
210 7 0.00
211 1 0.00
212 6 0.00
213 3 0.00
214 3 0.00
216 2 0.00
218 1 0.00
219 3 0.00
222 2 0.00
223 2 0.00
226 2 0.00
227 1 0.00
228 31 0.01
229 7 0.00
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.37
Consensus pattern (170 bp):
GTTTTATAACCTCATAATTGATTTTAAGTTGAATTTTTTTATATTTTTGATTAAAATAGATTATA
ATTGAATGTTTACCTAAGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
TCACTCATGCCTTCGAAAGCCTTATTACTCATTTTAAATG
Found at i:4838 original size:511 final size:506
Alignment explanation
Indices: 3695--5472 Score: 1328
Period size: 512 Copynumber: 3.5 Consensus size: 506
3685 TCTCTAATTA
* * * *
3695 GTTTTATAATATCATAATTGATTTTAATTTTAATT-TTTTACATTTTTGGATAGAACATATTATA
1 GTTTTATAAT-TCATAATTGATTTTAAGTTGAATTGTTTTAAATTTTT-GATAAAACATATTATA
* ** * *
3759 ATTGAATG-CTTGCCTTGGGAAACATAAAGCAAAAGTCATCTGTTGACAAGAAAAGTTCATTTAT
64 ATTGAATGTC-TGCCTTGGGAAACATGAAGCAAAAGTCATCCATCGACAAGAAAAGTCCATTTAT
* * * * * * * *
3823 AATCACTCGTGCCTGT-GAAAGCCTTATTAGTCAT-TTTAAATGGTTTTATAACCTCATCATTAA
128 AGTCACTCATG-CTTTCGAAAGCATTATTACTC-TCTTTAAATGGTTTTATAATCTCATAATTGA
* * * * * *
3886 CTTTAAGTTGAATTTTTTTATATTTTTGATTAAAATAGATTATGATTGCATGTTTACCTCAAGAA
191 -TTTTAGTTGAATTTTTTTACATTTTTGATTAAAACAGATTATAATTGAATGTTTACCT-TAGAA
* * * * * **
3951 ACGTGAAGCAAAAGCCATCGACTGACATGAAAAGA-CCCTTTATAGTGGCTCACCCCTTCGAAAG
254 ACGTGAAGCAAAAGCCATCCACTGATAAGAAAA-ATCCATTTATAGTCGCTCATGCCTTCGAAAG
* * * * * *
4015 CCTTGTTACTCACTTTCAAAAATTTTATAAGCTCATAAATTATTTTAAGTTGAATTTCTTTTAAT
318 CCTTATTACT--CTTGCAAAAATTTTATAACCTCATAAATGATTTTAAGCTAAATTTCTTTTAAT
* * * **
4080 TATCATTAAAATAGATGATAATTGGATCTTCACCTCAGGAAACATTGAGTGAAAGCCATCCATTG
381 TATCAGTAAAATAAATGATAATTGAATCTTCACCTCAGGAAACATTGAACGAAAGCCATCCATTG
* *
4145 ACTAGAGAAGTCCACTTATAGTCAATCATGCCTACAAAAGCTCTATAACTTGCTTTAAATG
446 ACTAGAGAAGTCCACTTATAGTCAATCATACCTACAAAAGCTCTATAACTCGCTTTAAATG
* * * * * *
4206 GTTTTATAAATTTATAATTGATTATAAGTTGAATTGTTTTACTATTTTAGGTAAAACAGATTATA
1 GTTTTAT-AATTCATAATTGATTTTAAGTTGAATTGTTTTA-AATTTTTGATAAAACATATTATA
* ** * * *
4271 ATTGAATGTCTGCCATAAGAAGA-ATGCAGCAAAAGTCACCCA-CTGACAACAAAAGTCCATTTA
64 ATTGAATGTCTGCCTTGGGAA-ACATGAAGCAAAAGTCATCCATC-GACAAGAAAAGTCCATTTA
* * *
4334 TAGTCACTCATGCTTTCGAAAGTATTGTTACTCTCTTTAAATGGTTTTATAATCTTATAATTGAT
127 TAGTCACTCATGCTTTCGAAAGCATTATTACTCTCTTTAAATGGTTTTATAATCTCATAATTGAT
*
4399 TTTGAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTGAGAAA
192 TTT-AGTTGAATTTTTTTACATTTTTGATTAAAACAGATTATAATTGAATGTTTACCTT-AGAAA
* * * ** *
4464 CGTGTAGAAAAAGCCATCCATTGATAAGAAAAATCCATTTATAGTTACTCATGCCTTCAAAAGCC
255 CGTGAAGCAAAAGCCATCCACTGATAAGAAAAATCCATTTATAGTCGCTCATGCCTTCGAAAGCC
* *
4529 TTATTA-T-TTGCATAAAATGGTTTTGTAACCTCATAACTGATTTTAAGCTAAATTT-TTTTAGA
320 TTATTACTCTTGCA-AAAA---TTTTATAACCTCATAAATGATTTTAAGCTAAATTTCTTTTA-A
* ** * * *
4591 TTTTGGGTAAAA-AAATTATAATTGAATGTTTACCAT-AGGAAACA-TGAAACGAAAGCCATCCA
380 TTATCAGTAAAATAAATGATAATTGAATCTTCACC-TCAGGAAACATTG-AACGAAAGCCATCCA
* * *** * *
4653 TTGAC-ACGA-AGAGTCCATTTATAGTCACTCATACCTTTGAAAGC-CTTATTACTCGTTTTAAA
443 TTGACTA-GAGA-AGTCCACTTATAGTCAATCATACCTACAAAAGCTC-TATAACTCGCTTTAAA
4715 TG
505 TG
* *
4717 GTTTTATAATCTCATAATTGATTTTAAGTTGGATTGTTTTAAATTTTTGATTAAAATATATTATA
1 GTTTTATAAT-TCATAATTGATTTTAAGTTGAATTGTTTTAAATTTTTGA-TAAAACATATTATA
* * *
4782 ATTGAAAGTCTACCTTGGGAAACATGAAGCAAAAGTCATCCATCGATAAGAAAAGTCCATTTATA
64 ATTGAATGTCTGCCTTGGGAAACATGAAGCAAAAGTCATCCATCGACAAGAAAAGTCCATTTATA
* * * * **********
4847 GTCACTCATACCTTCAAAAGCATTATTACTCGCTTNNNNNNNNNNTATAATCTCATAATTGATTT
129 GTCACTCATGCTTTCGAAAGCATTATTACTCTCTTTAAATGGTTTTATAATCTCATAATTGATTT
** * * *
4912 TAGGTCAAATTTTTTTTACATTTCT-ATTTAAAACATATTACAATTGAATGTTTACCTTAGGAAA
194 TA-GTTGAA-TTTTTTTACATTTTTGA-TTAAAACAGATTATAATTGAATGTTTACCTTA-GAAA
* * * *
4976 CATGAAGCGAAAGCCATCCACTG-TGACAAAAAGTCCATTTATAGTCGCTCATGCCTTCGAAAGC
255 CGTGAAGCAAAAGCCATCCACTGATAAGAAAAA-TCCATTTATAGTCGCTCATGCCTTCGAAAGC
* ** * * * * * *
5040 CTTATT-CTTCACTTTCAATGATTTTATAATCTTACAAATTATTTTAAGTTGAACTTT-TATTTA
319 CTTATTAC-T--CTTGCAAAAATTTTATAACCTCATAAATGATTTTAAGCT-AAATTTCT-TTTA
* * * * * * * * * * * *
5103 ATTTTTATTAAAATAGATTACAATTGGATGTTTACCT-TGAGAAACA-TGAAGCAAAAGCCATCA
379 ATTATCAGTAAAATAAATGATAATTGAATCTTCACCTCAG-GAAACATTGAA-CGAAAGCCATCC
* * * ** * * * * * * *
5166 ATTGACAAGAAAAGCCCACTTATAGTCAATCACGCCTTCGAAAGCCCTGTTACTCACTTTAAACG
442 ATTGACTAGAGAAGTCCACTTATAGTCAATCATACCTACAAAAGCTCTATAACTCGCTTTAAATG
* * * * * * * * *
5231 ATTTTATAATCTTATAAATT-ATTTCAATTTGAGTT-TTTT---TTGTTGCTATTAAAATAGATG
1 GTTTTATAAT-TCAT-AATTGATTTTAAGTTGAATTGTTTTAAATTTTTG--A-TAAAACATATT
* * * ** ** ** * * * * * *
5291 ATAATTGGATGTTTTCCTTAAGAAATTTGAAGTGAATGCCATCCATAGACAGGAAAGGTCTATTT
61 ATAATTGAATGTCTGCCTTGGGAAACATGAAGCAAAAGTCATCCATCGACAAGAAAAGTCCATTT
* * * * * * * *
5356 GTAATCACTCTTGCTTTCGAAAGCCTTATAACTCACTTTAAATGGTTTTATAGTTTCATAATTGA
126 ATAGTCACTCATGCTTTCGAAAGCATTATTACTCTCTTTAAATGGTTTTATAATCTCATAATTGA
* * *
5421 TTTTAGATT-AATTTTTTTTTACATTTTTAGA-AAAAATAGATTTTAATTGAAT
191 TTTTAG-TTGAA--TTTTTTTACATTTTT-GATTAAAACAGATTATAATTGAAT
5473 CTTTGCNNNN
Statistics
Matches: 1005, Mismatches: 212, Indels: 99
0.76 0.16 0.08
Matches are distributed among these distances:
508 4 0.00
509 4 0.00
510 21 0.02
511 290 0.29
512 526 0.52
513 32 0.03
514 115 0.11
515 9 0.01
516 4 0.00
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.38
Consensus pattern (506 bp):
GTTTTATAATTCATAATTGATTTTAAGTTGAATTGTTTTAAATTTTTGATAAAACATATTATAAT
TGAATGTCTGCCTTGGGAAACATGAAGCAAAAGTCATCCATCGACAAGAAAAGTCCATTTATAGT
CACTCATGCTTTCGAAAGCATTATTACTCTCTTTAAATGGTTTTATAATCTCATAATTGATTTTA
GTTGAATTTTTTTACATTTTTGATTAAAACAGATTATAATTGAATGTTTACCTTAGAAACGTGAA
GCAAAAGCCATCCACTGATAAGAAAAATCCATTTATAGTCGCTCATGCCTTCGAAAGCCTTATTA
CTCTTGCAAAAATTTTATAACCTCATAAATGATTTTAAGCTAAATTTCTTTTAATTATCAGTAAA
ATAAATGATAATTGAATCTTCACCTCAGGAAACATTGAACGAAAGCCATCCATTGACTAGAGAAG
TCCACTTATAGTCAATCATACCTACAAAAGCTCTATAACTCGCTTTAAATG
Found at i:5396 original size:169 final size:170
Alignment explanation
Indices: 4951--5407 Score: 420
Period size: 169 Copynumber: 2.7 Consensus size: 170
4941 AAAACATATT
* * * * * * *
4951 ACAATTGAATGTTTACCTTAGGAAACATGAAGCGAAAGCCATCCACTGTGAC-A-AAAAGTCCAT
1 ACAATTGGATGTTTACCTTAAGAAACATGAAGCAAAAGCCAT-CAAT-AGACAAGAAAAGCCCAC
* ** * * *
5014 TTATAGTCGCTCATGCCTTCGAAAGCCTTATTCTTCACTTTCAATGATTTTATAATCTTACAAAT
64 TTATAATCAATCACGCCTTCGAAAGCCTTATAC-TCACTTTAAATGATTTTATAATCTTACAAAT
* ** *
5079 TATTTTAAGTTGAACTTTTATTTAATTTTTATTAAAATAGATT
128 TATTTCAAGTTGAACTTTTATTTAATTGCTATTAAAATAGATG
* *
5122 ACAATTGGATGTTTACCTTGAGAAACATGAAGCAAAAGCCATCAATTGACAAGAAAAGCCCACTT
1 ACAATTGGATGTTTACCTTAAGAAACATGAAGCAAAAGCCATCAATAGACAAGAAAAGCCCACTT
* * *
5187 ATAGTCAATCACGCCTTCGAAAGCCCTGT-TACTCACTTTAAACGATTTTATAATCTTATAAATT
66 ATAATCAATCACGCCTTCGAAAG-CCT-TATACTCACTTTAAATGATTTTATAATCTTACAAATT
* * **
5251 ATTTCAATTTG-AGTTTT-TTTTGTTGCTATTAAAATAGATG
129 ATTTCAAGTTGAACTTTTATTTAATTGCTATTAAAATAGATG
* * ** ** * * * * * * *
5291 ATAATTGGATGTTTTCCTTAAGAAATTTGAAGTGAATGCCATCCATAGACAGGAAAGGTCTATTT
1 ACAATTGGATGTTTACCTTAAGAAACATGAAGCAAAAGCCATCAATAGACAAGAAAAGCCCACTT
* * ** * *
5356 GTAATCACTCTTGCTTTCGAAAGCCTTATAACTCACTTTAAATGGTTTTATA
66 ATAATCAATCACGCCTTCGAAAGCCTTAT-ACTCACTTTAAATGATTTTATA
5408 GTTTCATAAT
Statistics
Matches: 235, Mismatches: 45, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
167 1 0.00
168 4 0.02
169 109 0.46
170 9 0.04
171 106 0.45
172 5 0.02
173 1 0.00
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (170 bp):
ACAATTGGATGTTTACCTTAAGAAACATGAAGCAAAAGCCATCAATAGACAAGAAAAGCCCACTT
ATAATCAATCACGCCTTCGAAAGCCTTATACTCACTTTAAATGATTTTATAATCTTACAAATTAT
TTCAAGTTGAACTTTTATTTAATTGCTATTAAAATAGATG
Found at i:7870 original size:849 final size:849
Alignment explanation
Indices: 6191--8245 Score: 2033
Period size: 849 Copynumber: 2.4 Consensus size: 849
6181 GTTAAAAAAT
* * *
6191 ATTATAATTGAATGTTTTCCTAGGAAACGTGAAGCAAAAGTCATTCATTGGCAAGAAAAGTCCAT
1 ATTATAATTGAATGTTTTCCTAGGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGT-CAT
* * * * * *
6256 TTATAATCAATCATGCATTTCAAAG-CTCGATTACTCGCTTCAAATGGTTTTATAA-ATTCATAA
65 TTATAGTCAATCATGCCTTTGAAAGAAT-TATTACTCGCTTTAAATGGTTTTATAATA-TCATAA
* * * *
6319 TTGATTTTAAGTTGAATTTTTTTCTTTTTTTATCAAAACAGATTATAATTGAATGTCTACCGTGA
128 TTGATTTTAAGTTGAATTTTTTACATTTTTGATTAAAACAGATTATAATTGAATGTCTACCGTGA
* * * * *
6384 AAAATGTGAAGCCAAAGCCATCTATTGACAAGAAAAGTCCATTTATAGTCATTCATGCCTTCGAA
193 AAAATATGAAGCAAAAGCCATCTATTGACAAGAAAAATCCAATTATAGTCAATCATGCCTTCGAA
* * * ** *
6449 AGCACTATTACTCTCTTGAAATGATTTTATAATCTCATAATTGATTTTAAGTCAAATTATTTTAT
258 ACCACGATCACTCGATTCAAATGATTTTATAATCTCATAATTGATTTTAAGTCAAATTATTTTAT
* * ** * * * *
6514 ATTTTGAATTAAAACATATTATAATTGAATGTTTACCTCAGGAAACGTTAAGCGAAATCTATGCA
323 ATTTTG-ATCAAAACATATTATAATTGAATGTCTACCTCAGGAAACGCGAAGCCAAAGCCATCCA
* * * * * *
6579 CTGACACAAAAAGTCCATTTATAATCGCTCATGCCTTCGAAAGCCTTATTTTTCACTTTAAATGA
387 CTAACACAAAAAGTCCATTTATAATCACTCATGCCTTCAAAAGCATTATTATTCACTTGAAATGA
* * * *
6644 TTTTATAATCTTACAAATTATTTTAAGTTGAACTTTTTTTCAATTTTCATTAAAATAGATTACAA
452 TTTTATAATCTTACAAATTATTTTAAGCTCAAATTTTTTTCAATTTTCATTAAAACAGATTACAA
** * *
6709 TTGGATGTTTACCTAGAGAAACGTGAAGCAAAAGCCATTCATTGACAAGAAAAGCCTACTTATAG
517 TTCAATGTTTACCTAGAGAAACCTGAAGCAAAAGCCATCCATTGACAAGAAAAGCCTACTTATAG
* * *
6774 TCAATCATGCCTTCGAAAGCCTTATTACTCGCTTTAAACAATCTTATAACCTTATAAATTATTTC
582 TCAATCATACCTTCGAAAGCCTTATTACTCACTTTAAACAATCTTATAACATTATAAATTATTTC
*** * * *
6839 AAGTTGAATTTTTTTTTGTTGCCATGAAAATAGATGATAATTGGATGTTTACCTCGAGAAATGTG
647 AAGTTGAATTTTTTTCAATTGCCATGAAAATAGATGATAATTGGATGTTTACCTCAAAAAACGTG
* * * * *
6904 AAGCGAATACCATCCATTGACAAGAAAGGTCCATTTATAGTCACTCCTACTTTCGAAAGCCTTAT
712 AAGCGAATACCATCCATTAACAAGAAAAGTCCATTTATAGCCACTCATACCTTCGAAAGCCTTAT
* *
6969 TACTCACTTTAAATAGTTTTATAATCTCATAATTGATTTTAGATTGATTTTTTTA-TGTTTTTAG
777 TACTCACTTTAAATAGTTTTATAATCTCATAATTGATTTAAGATTGATTTTTTTACT-ATTTTAG
7033 CAAAAATAG
841 CAAAAATAG
* *
7042 ATTATAATTGAATGTTTTCCTTAGGAAACGTGAAGCAAAAGCCATCCTTTGAC-CGAAAAAGTAC
1 ATTATAATTGAATGTTTTCC-TAGGAAACGTGAAGCAAAAGCCATCCATTGACAAG-AAAAGT-C
* * *
7106 ATTTATAGTCACTCATGCCTTTGAAAGAATTATTATTTGCTTTAAATGGTTTTATAATATCATAA
63 ATTTATAGTCAATCATGCCTTTGAAAGAATTATTACTCGCTTTAAATGGTTTTATAATATCATAA
* * * **** *
7171 TTGATTTTAAGTTTAA-TTTTTACATTTTTGGTTAAAACATATTATAATTGAAT-T-TTTTTTTA
128 TTGATTTTAAGTTGAATTTTTTACATTTTTGATTAAAACAGATTATAATTGAATGTCTACCGTGA
* *
7233 GAAATATGAAGCAAAAGCCAT-TCATTTG-TAAGAAAAATCCAATTATAGTCAATCATGCCTTTC
193 AAAATATGAAGCAAAAGCCATCT-A-TTGACAAGAAAAATCCAATTATAGTCAATCATGCC-TTC
* * * * *
7296 -AAACCTCGATCACTCGATTCAAATGGTTTTATAAAT-TTATAATTGATTTTAAGTTAAATTTTT
255 GAAACCACGATCACTCGATTCAAATGATTTTAT-AATCTCATAATTGATTTTAAGTCAAATTATT
* * * * *
7359 TTACTTTTTTTG-TCAAAACATATTATAATTGTATGTCTGCCT-TGAGAAATGCGAAGCCAAAGC
319 TTA--TATTTTGATCAAAACATATTATAATTGAATGTCTACCTCAG-GAAACGCGAAGCCAAAGC
* * * * *
7422 CATCCATTAATA-AGAAAAGTCTATTTATAGTCACTCATGCCTTCAAAAGCATTATTATTCGCTT
381 CATCCACTAACACA-AAAAGTCCATTTATAATCACTCATGCCTTCAAAAGCATTATTATTCACTT
* *
7486 GAAATGGTTTTATAATC-T-CATAATTAATTTTAA-CTCAAATTGTTTTT-ACATTTT-TTTAAA
445 GAAATGATTTTATAATCTTACA-AATT-ATTTTAAGCTCAAATT-TTTTTCA-ATTTTCATT-AA
* ***
7546 AACAGATTACAATTCAATGTTTGCCTCA-AGAAACCT-ATAGTGCAAGCCATCCATTGACACA-A
505 AACAGATTACAATTCAATGTTTACCT-AGAGAAACCTGA-AGCAAAAGCCATCCATTGACA-AGA
* * * * ** * *
7608 AAAGTCTATTTGTAGTCACTCATACCTTCGAAAGCCTTATTACTCACTTTAAACGGTTTTATAAT
567 AAAGCCTACTTATAGTCAATCATACCTTCGAAAGCCTTATTACTCACTTTAAACAATCTTATAAC
* **
7673 ATTATAAATTATTTTAAGTTG-ATTTTTTTCAATTTTCA-GTAAAATAGATGATAATTGGATGTT
632 ATTATAAATTATTTCAAGTTGAATTTTTTTCAATTGCCATG-AAAATAGATGATAATTGGATGTT
* * * * ** ** *
7736 TTCCTTAAAAAACGTGAAGTGAATGCCATCTGTTAATTAGAAAAGTCCATTTATTGCCTA-TCAT
696 TACCTCAAAAAACGTGAAGCGAATACCATCCATTAACAAGAAAAGTCCATTTATAGCC-ACTCAT
* * * * *
7800 GCCTTCGAAAGCCTTATTACTCGCTTTACATTGTTTTATAAAT-TTATAATTGATTTCAAG-TTG
760 ACCTTCGAAAGCCTTATTACTCACTTTAAATAGTTTTAT-AATCTCATAATTGATTT-AAGATTG
* **
7863 AATTTTTTTACTATTTTGGTTAAAATAG
823 -ATTTTTTTACTATTTTAGCAAAAATAG
*** * * * * *
7891 ATTATAATTGAATGTCAACCCTAAGAAATGTAAAGCAAAAGCTACCCATTGACAAGAAAAGTCTA
1 ATTATAATTGAATGT-TTTCCTAGGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTC-A
* * * * *
7956 TTTATAGTTAGTCATGCCTTCGAAAGTAA-TATTACTCGCTTTAAATAGCTTTATAATATCATAA
64 TTTATAGTCAATCATGCCTTTGAAAG-AATTATTACTCGCTTTAAATGGTTTTATAATATCATAA
* * * * *
8020 TTAATTTTAAGTTGAATTGTTTTACATTCTTGCTTAAAATAGATTATAATTGAATGTCTGCCAG-
128 TTGATTTTAAGTTGAATT-TTTTACATTTTTGATTAAAACAGATTATAATTGAATGTCTACC-GT
* ** * * * * * *
8084 G-GAAACGTGAAGCAAGAGCCATCCATT-ACTAAGAAAAGTCCATTTATAGTCACTCAT-ACTGT
191 GAAAAATATGAAGCAAAAGCCATCTATTGAC-AAGAAAAATCCAATTATAGTCAATCATGCCT-T
* * * **
8146 CGAAAGCCTTAC--T-ATTCGCTTTAAAT-AGTTTTATAATCTCATAATTGATTTTAAGTTGAAT
254 CGAAA-CC--ACGATCACTCGATTCAAATGA-TTTTATAATCTCATAATTGATTTTAAGTCAAAT
* * *
8207 T-TTTTATATTTTTGGTTAAAACAGATTATAATTGAATGT
315 TATTTTATA-TTTTGATCAAAACATATTATAATTGAATGT
8246 TTGGCTCAAA
Statistics
Matches: 982, Mismatches: 175, Indels: 94
0.78 0.14 0.08
Matches are distributed among these distances:
847 3 0.00
848 148 0.15
849 488 0.50
850 25 0.03
851 124 0.13
852 187 0.19
853 6 0.01
855 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.38
Consensus pattern (849 bp):
ATTATAATTGAATGTTTTCCTAGGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCATT
TATAGTCAATCATGCCTTTGAAAGAATTATTACTCGCTTTAAATGGTTTTATAATATCATAATTG
ATTTTAAGTTGAATTTTTTACATTTTTGATTAAAACAGATTATAATTGAATGTCTACCGTGAAAA
ATATGAAGCAAAAGCCATCTATTGACAAGAAAAATCCAATTATAGTCAATCATGCCTTCGAAACC
ACGATCACTCGATTCAAATGATTTTATAATCTCATAATTGATTTTAAGTCAAATTATTTTATATT
TTGATCAAAACATATTATAATTGAATGTCTACCTCAGGAAACGCGAAGCCAAAGCCATCCACTAA
CACAAAAAGTCCATTTATAATCACTCATGCCTTCAAAAGCATTATTATTCACTTGAAATGATTTT
ATAATCTTACAAATTATTTTAAGCTCAAATTTTTTTCAATTTTCATTAAAACAGATTACAATTCA
ATGTTTACCTAGAGAAACCTGAAGCAAAAGCCATCCATTGACAAGAAAAGCCTACTTATAGTCAA
TCATACCTTCGAAAGCCTTATTACTCACTTTAAACAATCTTATAACATTATAAATTATTTCAAGT
TGAATTTTTTTCAATTGCCATGAAAATAGATGATAATTGGATGTTTACCTCAAAAAACGTGAAGC
GAATACCATCCATTAACAAGAAAAGTCCATTTATAGCCACTCATACCTTCGAAAGCCTTATTACT
CACTTTAAATAGTTTTATAATCTCATAATTGATTTAAGATTGATTTTTTTACTATTTTAGCAAAA
ATAG
Found at i:8278 original size:170 final size:170
Alignment explanation
Indices: 6148--14755 Score: 4992
Period size: 171 Copynumber: 50.2 Consensus size: 170
6138 ATTGGATGTT
* * * * * * *
6148 ATAACTGATTTTAAGTTTAA-TTTTTACA-TTATGGTTAAAAAATATTATAATTGAATGTTTTCC
1 ATAATTGATTTTAAGTTGAATTTTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTACC
* * * * * * *
6211 T-AGGAAACGTGAAGCAAAAGTCATTCATTGGCAAGAAAAGTCCATTTATAATCAATCATGCATT
66 TCAAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC-CT
* *
6275 TC-AAAG-CTCGATTACTCGCTTCAAATGGTTTTATAAAT-TC
130 TCGAAAGCCT-TATTACTCGCTTTAAATGGTTTTAT-AATCTC
* * *
6315 ATAATTGATTTTAAGTTGAATTTTTT-TCTTTTT-TTATCAAAACAGATTATAATTGAATGTCTA
1 ATAATTGATTTTAAGTTGAATTTTTTATATTTTTGGT-T-AAAACAGATTATAATTGAATGTTTA
* * * * *
6378 CCGTGAA-AAATGTGAAGCCAAAGCCATCTATTGACAAGAAAAGTCCATTTATAGTCATTCATGC
64 CC-TCAAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * *
6442 CTTCGAAAGCAC-TATTACTCTCTTGAAATGATTTTATAATCTC
128 CTTCGAAAGC-CTTATTACTCGCTTTAAATGGTTTTATAATCTC
** * *
6485 ATAATTGATTTTAAGTCAAATTATTTTATA-TTTTGAATTAAAACATATTATAATTGAATGTTTA
1 ATAATTGATTTTAAGTTGAATT-TTTTATATTTTTG-GTTAAAACAGATTATAATTGAATGTTTA
* * * * * * * * *
6549 CCTCAGGAAACGTTAAGCGAAATCTATGCACTGACACA-AAAAGTCCATTTATAATCGCTCATGC
64 CCTCAAGAAACGTGAAGCAAAAGCCATCCATTGACA-AGAAAAGTCCATTTATAGTCACTCATGC
** * *
6613 CTTCGAAAGCCTTATTTTTCACTTTAAATGATTTTATAATCTTAC
128 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATC-T-C
* ** * * *
6658 A-AATT-ATTTTAAGTTGAACTTTTTT-TCAATTTTCATTAAAATAGATTACAATTGGATGTTTA
1 ATAATTGATTTTAAGTTGAA-TTTTTTAT-ATTTTTGGTTAAAACAGATTATAATTGAATGTTTA
* * *
6720 CCT-AGAGAAACGTGAAGCAAAAGCCATTCATTGACAAGAAAAG-CCTACTTATAGTCAATCATG
64 CCTCA-AGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCC-ATTTATAGTCACTCATG
*** * * *
6783 CCTTCGAAAGCCTTATTACTCGCTTTAAACAATCTTATAACCTT
127 CCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* * * * * * *
6827 ATAAATT-ATTTCAAGTTGAATTTTTT-T-TTGTTGCCATGAAAATAGATGATAATTGGATGTTT
1 AT-AATTGATTTTAAGTTGAATTTTTTATATTTTTG--GTTAAAACAGATTATAATTGAATGTTT
* * * * * *
6889 ACCTCGAGAAATGTGAAGCGAATA-CCATCCATTGACAAGAAAGGTCCATTTATAGTCACTCCTA
63 ACCTCAAGAAACGTGAAGC-AAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * *
6953 CTTTCGAAAGCCTTATTACTCACTTTAAATAGTTTTATAATCTC
127 CCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* * * ** * *
6997 ATAATTGATTTT-AGATTGATTTTTTTATGTTTTTAGCAAAAATAGATTATAATTGAATGTTTTC
1 ATAATTGATTTTAAG-TTGAATTTTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTAC
* * * * *
7061 CTTAGGAAACGTGAAGCAAAAGCCATCCTTTGAC-CGAAAAAGTACATTTATAGTCACTCATGCC
65 CTCAAGAAACGTGAAGCAAAAGCCATCCATTGACAAG-AAAAGTCCATTTATAGTCACTCATGCC
* ** * * *
7125 TTTGAAAGAATTATTATTTGCTTTAAATGGTTTTATAATATC
129 TTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* * * **
7167 ATAATTGATTTTAAGTTTAA-TTTTTACATTTTTGGTTAAAACATATTATAATTGAAT-TTT-TT
1 ATAATTGATTTTAAGTTGAATTTTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTACC
** ** * * * * *
7229 TTTAGAAATATGAAGCAAAAGCCATTCATTTG-TAAGAAAAATCCAATTATAGTCAATCATGCCT
66 TCAAGAAACGTGAAGCAAAAGCCATCCA-TTGACAAGAAAAGTCCATTTATAGTCACTCATGCC-
* * * * *
7293 TTC-AAA-CCTCGATCACTCGATTCAAATGGTTTTATAAAT-TT
129 TTCGAAAGCCT-TATTACTCGCTTTAAATGGTTTTAT-AATCTC
* * * * * * *
7334 ATAATTGATTTTAAGTTAAATTTTTT-TACTTTTTTTGTCAAAACATATTATAATTGTATGTCTG
1 ATAATTGATTTTAAGTTGAATTTTTTATA--TTTTTGGTTAAAACAGATTATAATTGAATGTTTA
** * * * * * *
7398 CCTTGAGAAATGCGAAGCCAAAGCCATCCATTAATAAGAAAAGTCTATTTATAGTCACTCATGCC
64 CCTCAAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
* * * *
7463 TTCAAAAGCATTATTATTCGCTTGAAATGGTTTTATAATCTC
129 TTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* * ** * * *
7505 ATAATTAATTTTAACTCAAATTGTTTTTACATTTTT--TTAAAAACAGATTACAATTCAATGTTT
1 ATAATTGATTTTAAGTTGAA-T-TTTTTATATTTTTGGTT-AAAACAGATTATAATTGAATGTTT
* * *** * *
7568 GCCTCAAGAAACCT-ATAGTGCAAGCCATCCATTGACACA-AAAAGTCTATTTGTAGTCACTCAT
63 ACCTCAAGAAACGTGA-AGCAAAAGCCATCCATTGACA-AGAAAAGTCCATTTATAGTCACTCAT
* * * * *
7631 ACCTTCGAAAGCCTTATTACTCACTTTAAACGGTTTTATAATATT
126 GCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* ** * * * *
7676 ATAAATT-ATTTTAAGTTGATTTTTTTCA-ATTTTCAG-TAAAATAGATGATAATTGGATGTTTT
1 AT-AATTGATTTTAAGTTGAATTTTTT-ATATTTTTGGTTAAAACAGATTATAATTGAATGTTTA
* * ** * ** * ** * *
7738 CCTTAAAAAACGTGAAGTGAATGCCATCTGTTAATTAGAAAAGTCCATTTATTGCCTA-TCATGC
64 CCTCAAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTC-ACTCATGC
* * *
7802 CTTCGAAAGCCTTATTACTCGCTTTACATTGTTTTATAAAT-TT
128 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTAT-AATCTC
* * **
7845 ATAATTGATTTCAAGTTGAATTTTTT-TACTATTTTGGTTAAAATAGATTATAATTGAATGTCAA
1 ATAATTGATTTTAAGTTGAATTTTTTATA-T-TTTTGGTTAAAACAGATTATAATTGAATGTTTA
* * * * * * *
7909 CC-CTAAGAAATGTAAAGCAAAAGCTACCCATTGACAAGAAAAGTCTATTTATAGTTAGTCATGC
64 CCTC-AAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
*** * * *
7973 CTTCGAAAGTAATATTACTCGCTTTAAATAGCTTTATAATATC
128 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* * * * * * *
8016 ATAATTAATTTTAAGTTGAATTGTTTTACATTCTTGCTTAAAATAGATTATAATTGAATGTCT-G
1 ATAATTGATTTTAAGTTGAATT-TTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTAC
* * *
8080 C-CAGGGAAACGTGAAGCAAGAGCCATCCATT-ACTAAGAAAAGTCCATTTATAGTCACTCAT-A
65 CTCA-AGAAACGTGAAGCAAAAGCCATCCATTGAC-AAGAAAAGTCCATTTATAGTCACTCATGC
* * *
8142 CTGTCGAAAGCCTTACTATTCGCTTTAAATAGTTTTATAATCTC
128 CT-TCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
**
8186 ATAATTGATTTTAAGTTGAATTTTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTGGC
1 ATAATTGATTTTAAGTTGAATTTTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTACC
* * * * ** * ** * *
8251 TCAAAAAATGTGAAGAAAAATCCATCCATTTG-CAAGAAAAGTTTAATTTTTTTTTA--CAT--T
66 TCAAGAAACGTGAAGCAAAAGCCATCCA-TTGACAAGAAAAG-TCCATTTATAGTCACTCATGCC
* * * * * * * *
8311 TTCGGCTAAA-ACATATTA--CAC-TTGAATGTTTACCTTAGAAAATGTGA
129 TTC-G--AAAGCCTTATTACTCGCTTTAAATGGTT---TT--ATAATCT-C
* * ** * *** ** *
8358 AGTGAA-AGCCATCTACTGACACG-AAAAGTCTATTTATAGTTGCTCATACTTTTGAA-AGCGTT
1 A-T-AATTG--AT-T--TTA-A-GTTGAA-T-TTTTTATA-TT--T--TTGGTTAAAACAG-ATT
* * ** * ** * * ** * *
8420 ATTCTTCACTTTAAATGATTTTATAATCTAACAAATTATTTTAAGCTAAA-CTTTTTTTCAGTTT
49 A----T-A-ATTGAATG--TTTA-CCTC-AA-GAA--ACGTGAAGCAAAAGC---CATCCA-TTG
* * * * * * * * * * *
8484 TCATTA-AAATAGATTACAATTGGATATTTACCTTAAGAAACGT-G-AAGCAC-AACCTA-TC-C
97 ACA--AGAAA-AG--T-CCATT-TATAGTCA-CTCATG--CCTTCGAAAGC-CTTA-TTACTCGC
* * * *
8543 ATTGATAAGAAAAGGCCATTTATAGTC-A
150 -TT--T---AAATGG--TTTTATAATCTC
* * * **** ** * ** * **
8571 ATCA-TGCCTTTGAAAGCCCTATTACTCACT-TTAAATGATT-TTACA-ACCTTATAACTTATTG
1 ATAATTG-ATTT-TAAGTTGAATTTTTTA-TATT-TTTGGTTAAAACAGA--TTAT-A---ATTG
** * * ** ***
8632 CAAGTTGAATTGT-TTTTAATTGCCATTAACGTAGATG-ATAATTGGATGTTTATCTCGAAAAAC
56 -AA--TG--TT-TACCTCAA--G--A--AACGT-GAAGCA-AA----A-G-CCATC-C-ATTGAC
* * * ** * * * * *
8695 GTGAAGCAAATGCAATCCGTTGATAAG--A-AAAGTTCATT-TATA-CTCAATCATGCCTCACTC
99 ---AAG-AAA---AGTCCATTTAT-AGTCACTCA-TGCCTTCGAAAGC-C--TTAT---T-ACTC
*
8755 GCTTTAAATGGTTTTATAAAT-TT
148 GCTTTAAATGGTTTTAT-AATCTC
* * * * * *
8778 ATAATTGATTTTAAGTGGAATTTTTTTTACTATTTTGGCTAAAACATATTATAATTGAATGCTTG
1 ATAATTGATTTTAAGTTGAATTTTTTATA-T-TTTTGGTTAAAACAGATTATAATTGAATGTTTA
* * * * * *
8843 CCT-AGAGAAATGTGAAGCAAAAGGCACCCATTGACAAAAAAAGTCTATTTATATTCACTCATGC
64 CCTCA-AGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
** *
8907 CTAT-GAAAGTATTATTACTCGCTTTAATTGGTTTTATAATCTC
128 CT-TCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* * * * *
8950 ATAATTGATTTTAAGTTTAATTTTTTACATTCTTGGTTAAAACAAATTATAATTAAAT-TTCTA-
1 ATAATTGATTTTAAGTTGAATTTTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTT-TAC
* * * * *
9013 C-CAAGAAAACGTGAAGCAAAAGCCATCTATTGGCAATAAAAGTCCATTTACAGTCACTCATGCT
65 CTCAAG-AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
* ** * *
9077 TTCGAAAGCCTTAGTACTCATTTTAAATAGTTTTATAATCTA
129 TTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* * * * * * * * * **
9119 ATAATCGATTTTAGGTTCAATTTTTTTACATTTTTGATAAAAATATATTATAATTGATTGTTTGT
1 ATAATTGATTTTAAGTTGAA-TTTTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTAC
* * * * *
9184 CTCAAGAAACGTGAAGCAAAAGCCATCCTTTGATAAAAAAAAGTCCATTTATACTCACTTATGCC
65 CTCAAGAAACGTGAAGCAAAAGCCATCCATTGA-CAAGAAAAGTCCATTTATAGTCACTCATGCC
* * *
9249 TTCGAAAACGTTATTACTCGCTTTAAATGGTTTTATAATATC
129 TTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* * * * ** * *
9291 ATAATTGATTTTAAGTTTAATTTATTACATTTTTAGTTAAAACATTTTCTAATTGAATGTTT-GC
1 ATAATTGATTTTAAGTTGAATTTTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTACC
*** * * * * *
9355 TTGGGAAACGTGAAGCAAAAGTCATCCATTGACAAAAAAAGTCCATTCATAGTCAATCATACCTT
66 TCAAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT
* * * * *
9420 TGAAAGCCTGATTACTTGCTTTAAACGGTTTTATAAAT-TG
131 CGAAAGCCTTATTACTCGCTTTAAATGGTTTTAT-AATCTC
* * * * *
9460 ATAATTGATTTTAAGTTGAACTTTTTACT-TTTTTTG-TCAAACAGATTATAATTGAATGTCTGC
1 ATAATTGATTTTAAGTTGAATTTTTTA-TATTTTTGGTTAAAACAGATTATAATTGAATGTTTAC
* * * ** * *
9523 C-CTAAGAAATGTGAAGTAAAAGCCATCCACTGGTAAGAAAAGTCCATTTGTAATCACTCATGCC
65 CTC-AAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
* * *
9587 TTCGAAAGCATTATTACTTGCTTTAAATGGTTTTATAATATC
129 TTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
** * * * * * * **
9629 ATAATCAATTTTAAGTTTAATTTTTTACATTTTTTGATAAAACATAATATAATTGAATGTTTGTC
1 ATAATTGATTTTAAGTTGAATTTTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTACC
*** * * * * * ** *
9694 TTGGGAAACATAAAGCAAAAGTCATCAATTGACAAGACAAGTCCATTTATAGTCACTCACACTTT
66 TCAAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT
* * *
9759 CAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCCC
131 CGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* ** * *
9799 ATAATTGATTTTAAGTTGAATTTGTTTACATTTTTTATTAAAACAGATTATAATTAAATGTTTGC
1 ATAATTGATTTTAAGTTGAATTT-TTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTAC
* * * * * *
9864 CTTAAGAAACGTGAAGCAAAAGCCATGCATTAACACA-AAAAGTCCTTTTATAGTCACCCATCCC
65 CTCAAGAAACGTGAAGCAAAAGCCATCCATTGACA-AGAAAAGTCCATTTATAGTCACTCATGCC
* * * * * * *
9928 TTCAAAAGCCTTATTACTCACTTTAAACGATTTTATGACCTT
129 TTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
** * * * * *
9970 ATAAATT-ATTTTAAGTT--A------CCA-------TCAAAATAGATGATAATTGGATGTTTGC
1 AT-AATTGATTTTAAGTTGAATTTTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTAC
* * * ** * * * * *
10019 TTCAGGAAACATGAAGTGAAAGCCATCCATTAACAAG-AAAGTTCTATTTATATTCA-ACATACC
65 CTCAAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAG-TCCATTTATAGTCACTCATGCC
* * * * * *
10082 ATCGAAAGCCCTAATGCTCACTATAAATGGTTTTATAAAT-TC
129 TTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTAT-AATCTC
* * * * * * * * *
10124 ATAACTAATTTTAAGTTAAATTTTTT-TACTATTTTAGTTAAAACAAATTATAATTAAATATCTG
1 ATAATTGATTTTAAGTTGAATTTTTTATA-T-TTTTGGTTAAAACAGATTATAATTGAATGTTTA
* * * * * * * ** *
10188 CTCTGAA-AAATGTGAGGTAAAAGCCACCCATTGACAAGAAAAGTCTATTTATAGCCACTTGTGA
64 C-CTCAAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * *
10252 CTTCGAAAGCATTATTACTCACTTTAAATGGTTTTATGATCTC
128 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* * * * * *
10295 ATAATTAATTTTAAGTTGAGCTTTTTCTAGAGTTTTGGTTAAAATAGATTATAACTGAATGTTTA
1 ATAATTGATTTTAAGTTGA-ATTTTT-TATATTTTTGGTTAAAACAGATTATAATTGAATGTTTA
* * * ** * *
10360 CCT-AGGGAAACGTGAAGTAAAAGTCATCCATTGGTAAGAGAAGTCCATTTATAGTCACTGATGC
64 CCTCA-AGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * * *
10424 CATT-GAAAGCCTTATTACTTGCTTTCAATAGTTTTGTAATCTT
128 C-TTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* * * * *
10467 ATAATTGATTTTAAGATGAATTATTTTACATTTTTAG-TAAAA-ACA-TATTA-T-AA--TTT--
1 ATAATTGATTTTAAGTTGAATT-TTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTAC
* * * * * *
10523 CT-AGGAAACAG-GAAGCGAAAGCCATCCATT-AGCACGAAAAGTCCATTTCTAATCACTCATAC
65 CTCAAGAAAC-GTGAAGCAAAAGCCATCCATTGA-CAAGAAAAGTCCATTTATAGTCACTCATGC
* ** *
10585 CATCGAAAGCCTTATTACTTACTTTAAACGGTTTTATAATCAT-
128 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATC-TC
* * ** *
10628 ATAAATT-ATTTTAAGTTTAATTTTTT-TTTGGTTTTCATTAAAATC-GATGATAATTTG-ATGT
1 AT-AATTGATTTTAAGTTGAATTTTTTATAT--TTTTGGTTAAAA-CAGATTATAA-TTGAATGT
** * * * * * * * *
10689 TTTGCTCGAGAAACAT-AAACAAAAGCCATCCATTCACAAGAAAGGTCCATTCACAGTCAATCAT
61 TTACCTCAAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * *
10753 GCCTTCAAAAGCCCTATTACTCGCTTTAAATGATTTTATAAAT-TC
126 GCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTAT-AATCTC
* * *
10798 ATAATTGATTTTAAGTTGAGTTTTTT-TACTTCTTTGGTCAAAACAGATTATAATTGAATGTCTA
1 ATAATTGATTTTAAGTTGAATTTTTTATA-TT-TTTGGTTAAAACAGATTATAATTGAATGTTTA
* * * ** *
10862 CC-CTAAGAAACGTAAAGCAAAAGCCATCCATTGATAAGAAATGTTTATTTATAGTCACTCATTC
64 CCTC-AAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * *
10926 CTTCGAAAGCATTATTACTCGCTTTAAATAGTTTTATAATATC
128 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* * * ** * *
10969 ATAAATGATTTTAAGTAGAGTTTCTTTGCATTTTTGGTTAAAACAAATTATAATTGAATGTCTAC
1 ATAATTGATTTTAAGTTGAATTT-TTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTAC
* * * * * *
11034 CTCAAGAAACATGAAGGAAAAGCCATCCATTGGCTAGAAAAGTCCATTTATAGTCATTCATTCCT
65 CTCAAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT
*
11099 TCGAAAGCCTTATTACTTGCTTTAAATGGTTTTATAATCTC
130 TCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* * * * * * *
11140 ATAATTGATTTTAAGCTAAACTTTTTACATTTTTTGTTAAAACAGATTATAGTT-AATTGTTTGC
1 ATAATTGATTTTAAGTTGAATTTTTTATATTTTTGGTTAAAACAGATTATAATTGAA-TGTTTAC
* * * * ** * * * * *
11204 CT-AGGGAATCGTGAAGTAAAAGCCATGCATTGGGAA-AACAA-TTCATTTAGAGTCTCTTATAC
65 CTCA-AGAAACGTGAAGCAAAAGCCATCCATTGACAAGAA-AAGTCCATTTATAGTCACTCATGC
* * * *
11266 CTTCGAAAGCCTTATTACTAGGTTTAAATAGTTTTATAGTCTC
128 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* ** * * *
11309 ATACTTGATTTTAAGTTGAATTTTTTTGATATTTTTCATTAAAATAGATTAGAATTGAATGTTTG
1 ATAATTGATTTTAAGTTGAA-TTTTTT-ATATTTTTGGTTAAAACAGATTATAATTGAATGTTTA
* * * ** * * **
11374 TCT-AGAAAAATGTGAAGTGAAAGCTATCCATTGACAAGAAAAGTCCTTTTATAGT-AGCTCACC
64 CCTCA-AGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCA-CTCATG
* * ** * *
11437 CCTTCAAAAGCCTTATTACTCACTTTAAA-GGATTTTACGACCTT
127 CCTTCGAAAGCCTTATTACTCGCTTTAAATGG-TTTTATAATCTC
* ** ** * ** * * * * *
11481 ATAAACT-A-TTTATTTTGAATTTTTT-TGGTTATCATTAAAATAGATGATAATTGGATATTTAA
1 AT-AATTGATTTTAAGTTGAATTTTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTAC
*** * ** * * *
11543 CTTGGGAAACATGAAGCAAAAATCATCCATTGACAAGAAAAGTCTATTTATAGTCAATCATACCT
65 CTCAAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT
*
11608 TCAAAAG-CTTAATTACTCGCTTTAAATGGTTTTATAAAT-TC
130 TCGAAAGCCTT-ATTACTCGCTTTAAATGGTTTTAT-AATCTC
* * * * *
11649 ATAATTGAGTATAAGTTGAATGTTTTTACTA-TTTTGGGTAAAACAGATTATAATTGAATGTCTG
1 ATAATTGATTTTAAGTTGAAT-TTTTTA-TATTTTTGGTTAAAACAGATTATAATTGAATGTTTA
* * * * * * *
11713 CC-CTGAGAAGCATCAAGCAAAAGCCACCCATTGGCAAGAAAAGTCCATTTATAGCCACTCATGC
64 CCTC-AAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * * * * *
11777 CTTCAAAAGCCTTATTACTTGCATAAAATGATTTTGTAATTTC
128 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* * * *
11820 ATAATTGATTTTAAGTTGAATTTTTTTTTTCATTTTGGGCTT-AAACGGATTATAATTGAATATT
1 ATAATTGATTTTAAGTTGAA--TTTTTTAT-ATTTTTGG-TTAAAACAGATTATAATTGAATGTT
* * ** * *
11884 TA--TCATAGGAAATGTGGAGTGAAAGCCATCCATTGACATGAAAAGTCCATTTATAGTCACTAA
62 TACCTCA-A-GAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA
* * **
11947 TGCCATT-AAAAGCCTTGTTACTTACTTTAAATGGTTTTATAATCTC
125 TGCC-TTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* * * * *
11993 ATAATTGATTTTAAGTTGAATTCTTTTACATTTTTAGTTAAAACATATTATAATTGAATGTCTGC
1 ATAATTGATTTTAAGTTGAATT-TTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTAC
* * ** * * * * * *
12058 CTCAAAAAACATGTCGAAAAAGCTATCAATTGGCAAGAAAAGTTCATTTATAGTCACTCACGCCT
65 CTCAAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT
* * * * * * *
12123 TCGAAGGCTTTATTACTTGC-ATAAGATAGTTTTGTAATCTT
130 TCGAAAGCCTTATTACTCGCTTTAA-ATGGTTTTATAATCTC
* * * * ** *
12164 ATAATTGATTTTGAGTTGAGTTTTTTTACATTTTGGGCAAAAACATA-T-TAATTGAATGTTTA-
1 ATAATTGATTTTAAGTTGA-ATTTTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTAC
* * * * *
12226 CTACAGGAAACATGAAGTAAAAGCCATCCATTGACATGGAGAA-TCCATTTATAGTCACTCATGC
65 CT-CAAGAAACGTGAAGCAAAAGCCATCCATTGACA-AGAAAAGTCCATTTATAGTCACTCATGC
* *
12290 CTTTGAAAGCCTTATTACTCGCTTAAAATGGTTTTATAATCTC
128 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* * * * * *
12333 ATAATTGATTTTAAATTGAATGTTTTTTTACATTTTTAGTTCAAACATAATATAATTGAATGTTT
1 ATAATTGATTTTAAGTTGAA---TTTTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTT
* * * * * *
12398 GCCTTAAGAAACATGAAGTAAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGA
63 ACCTCAAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * * * * *
12463 CTTTGAAAGCATTATTAATCACTTGAAATGGTTTTATAATATT
128 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* * * * * * *
12506 GTAATTGATTTTAAGTAGAATTTTTTACATTTTTGATTAAAACAGATGACAATTGAATGTTTGCC
1 ATAATTGATTTTAAGTTGAATTTTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTACC
* * * *
12571 TTC-GGAAACATGAAGCAAAAGCCA-CCAATTGACATGAAAAGTCCATTTGTAGTCACTCATGCC
66 -TCAAGAAACGTGAAGCAAAAGCCATCC-ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
* ** * *
12634 TTTGAAAGCCTTATTACTAACTTTAAACT-ATTTTATAATCTT
129 TTCGAAAGCCTTATTACTCGCTTTAAA-TGGTTTTATAATCTC
* * * ** ** * * *
12676 ATGAATT-ATTTTAAGCTGAATTGTTTT-CAGTTTTCATTAAAGTAGATGATAATTGGATGTTTT
1 AT-AATTGATTTTAAGTTGAATT-TTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTA
* * * * * ** ** *
12739 CCTCATGACATGAGAAGCAAATGCTGTCTGTTGA-ATAGAAAAGTCCATTTATAGTCAATCATGC
64 CCTCAAGAAACGTGAAGCAAAAGCCATCCATTGACA-AGAAAAGTCCATTTATAGTCACTCATGC
* * *
12803 CTTCGAAAGCCCTATTACTTGCTTTACATGGTTTTATAAAT-TC
128 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTAT-AATCTC
* * * *
12846 ATAATT-AATTTAAGTTGAACTTTTTTACTA-TTTTGGTTAAAACAGATTGTGATTGAATGTTTG
1 ATAATTGATTTTAAGTTGAA-TTTTTTA-TATTTTTGGTTAAAACAGATTATAATTGAATGTTTA
* * * * * * * *
12909 CCTTAATAAACTTGAAACAAAAGCCA-CCAATTAATAAGAAAAGTCTATTTATAGTCACTTATGC
64 CCTCAAGAAACGTGAAGCAAAAGCCATCC-ATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * *
12973 CTTCGAAAGCCTTATTACTTGTTTTAAATGGCTTTATAATCTC
128 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* * * ** * ** * *
13016 ATAATTGATTTTAAGTTGAATTGGTTTTACATTTTTAGTTAAAATAGATTGCAATTAAAAATCTC
1 ATAATTGATTTTAAGTTGAATT--TTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTA
* * * * * * * *
13081 CCTCAAAAAACATGAAGAAAAAGCCATCCCTTGGCAAGAAAAGTCTATTTATAGTCACTCATTCT
64 CCTCAAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
* * *
13146 TTTGAAAGCCTTATTACTCAG-TTTAAATGGTTTTATAGTCTT
129 TTCGAAAGCCTTATTACTC-GCTTTAAATGGTTTTATAATCTC
* * * * ** * * * *
13188 GTAATTGATTTTAGGTTCAACTTTTTTACATTTTTTATTAAAATAGATTATAGTTGATTGTTTGC
1 ATAATTGATTTTAAGTTGAA-TTTTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTAC
* * * * * * * * *
13253 TTCAGGAAACGTGAAGCAAAAGCTATGCATTGACAAGAAAAGTTCATATATAGTCTCTTATGCTT
65 CTCAAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT
* * *
13318 TTGAAAGCCTTATTACTCGGTTTAAATGGTTTTATATTCTC
130 TCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* * * ** ** *
13359 ATAATTGATTTTGAGTTGAATTTTTTTACATTTTTAGAAAAAAGTTGATTATAAATGAATGTTCT
1 ATAATTGATTTTAAGTTGAA-TTTTTTATATTTTTGGTTAAAA-CAGATTATAATTGAATGTT-T
* * * *
13424 -CCTCAAGAAACATGAAGCGAAAGCCATCCATTGACAAGAAGAGTCCATTTATAGTCACTCTTAG
63 ACCTCAAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT-G
* *
13488 -CTTTGAAAGCCTTACTACTCGCTTTAAATGGTTTTATAATCTC
127 CCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* * ** * * * * * * * **
13531 GTCATTGATTTTAAACTGAATTATTTTACATTTTTTGTCAAATCATATTCTAATTGAATATCCAC
1 ATAATTGATTTTAAGTTGAATT-TTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTAC
** * *
13596 CTTGAGAAACATGAAGCAAAAGCCATCCATTGACAA-AAGAAGTCCATTTATATTCACTCATGCC
65 CTCAAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAA-AAGTCCATTTATAGTCACTCATGCC
* * * * * * *
13660 CTCGAAAGCATTATTTCTCACTTGAAATGATTTTGTAATCTC
129 TTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* * * *
13702 ATAATTGATTTTAAGTTGAAGTTTTTTACATTTTTGGTTAAACCAGATTACAATTGAATGTTTGC
1 ATAATTGATTTTAAGTTGAA-TTTTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTAC
* * * * * * * * * **
13767 CTTAGGAAACATGAAGCGAAGGCCATCCATTGACACGGAAGGTCTATTCGTAGTCACTCATGCCT
65 CTCAAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT
* * *** *
13832 TTGAAAGTCTTATTACTTATTTTAAATGGTTTTATAATCTT
130 TCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* * * * * *
13873 ATAAATT-ATTTTAAGTTGACTTTTTTTATTCAATTTTT-ATTAAAATAGATGATACTTGGATGT
1 AT-AATTGATTTTAAGTTGA-ATTTTTTA-T--ATTTTTGGTTAAAACAGATTATAATTGAATGT
* ** * * *
13936 TTACCTCAAGAAACGTGAAGCAAATGCCATCTGTTGACCAA-AAAAGTCCATTTATAATTAGTCA
61 TTACCTCAAGAAACGTGAAGCAAAAGCCATCCATTGA-CAAGAAAAGTCCATTTATAGTCACTCA
* * **
14000 TGCCTCCAAAAGTCC-TATTACTCATTTTAAATGGTTTTATAAAT-TC
125 TGCCTTCGAAAG-CCTTATTACTCGCTTTAAATGGTTTTAT-AATCTC
* *
14046 ATAATTGATTTTAAATTGAATATTTTTACTA-TTTTGGTTAAAACATATTATAATTGAATGTATG
1 ATAATTGATTTTAAGTTGAAT-TTTTTA-TATTTTTGGTTAAAACAGATTATAATTGAATGT-T-
* * * * * *** * *
14110 T-CCT-GAGAAACAG-AAAGTAAAA-CTCACCCATTGACAAGAAAGGTCTGCTTCTAGTCACTAA
62 TACCTCAAGAAAC-GTGAAGCAAAAGC-CATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA
* *
14171 TGCCTTCTAAAGCATTATTACTCGCTTTAAATGGTTTTATAATCTC
125 TGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* * * * * * * *
14217 ATAATCGATTTTTAA-TTGAATTTTTTTTACATTCTTAGTTCAAATAGATTGTAATTGAATGTAT
1 ATAATTGA-TTTTAAGTTGAA--TTTTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTT
* ** * ** ** *
14281 GCCT-GGGAAACATGAAGCAAAAGCTGTCCATTGGTAAGAAAAATCCATTTATAGTCACTCATGC
63 ACCTCAAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* *
14345 TTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
128 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* * * * * *
14388 ATAATTCATTTTAACTTGAATTTTTTTACATTTTTGGTTAAAAAAGATTATAATTGATTGTTTGC
1 ATAATTGATTTTAAGTTGAA-TTTTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTAC
* * * * * * * *
14453 CTTCAA-AAACATGAAGCAAAAACTATGCATTGACAAAAAAAGTTCATTCATACTCACTCATGCC
65 C-TCAAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
* *
14517 TTTGAAAGCCTTATTACTCAG-TTTAAATGATTTTATAATCTC
129 TTCGAAAGCCTTATTACTC-GCTTTAAATGGTTTTATAATCTC
* * * * * * * ** * *
14559 ATAATTGATTTTCACTTGAATTTTTTTAAATGTCTAGTGAAAGTAGAATATAATTCAATGTTTAC
1 ATAATTGATTTTAAGTTGAA-TTTTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTAC
* * * * * *
14624 CAT-AAGAAACATAAAGCAAAAGACATCTATTGA-AATGAAAAGTCCATTTATAGTAACTCATAC
65 C-TCAAGAAACGTGAAGCAAAAGCCATCCATTGACAA-GAAAAGTCCATTTATAGTCACTCATGC
* * * *
14687 CTTCGAAAGCCTTATTACTCTCTTTAAATGATTTTATATTCTT
128 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
14730 ATAAATT-ATTTTAAGTT-ATATTTTTT
1 AT-AATTGATTTTAAGTTGA-ATTTTTT
14756 TNNNNNNNNN
Statistics
Matches: 6533, Mismatches: 1487, Indels: 839
0.74 0.17 0.09
Matches are distributed among these distances:
153 3 0.00
154 51 0.01
155 63 0.01
156 1 0.00
159 1 0.00
160 5 0.00
161 98 0.02
162 16 0.00
163 1 0.00
164 6 0.00
166 12 0.00
167 118 0.02
168 177 0.03
169 806 0.12
170 1435 0.22
171 2339 0.36
172 703 0.11
173 388 0.06
174 21 0.00
175 3 0.00
176 11 0.00
177 4 0.00
178 6 0.00
179 6 0.00
180 4 0.00
181 7 0.00
182 2 0.00
183 3 0.00
184 2 0.00
185 4 0.00
186 9 0.00
187 1 0.00
190 1 0.00
191 6 0.00
192 11 0.00
194 4 0.00
195 2 0.00
196 3 0.00
197 7 0.00
198 4 0.00
199 11 0.00
200 7 0.00
201 12 0.00
202 9 0.00
203 11 0.00
204 9 0.00
205 8 0.00
206 23 0.00
207 26 0.00
208 15 0.00
209 8 0.00
210 9 0.00
211 12 0.00
212 9 0.00
213 7 0.00
214 3 0.00
215 4 0.00
217 2 0.00
218 3 0.00
220 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (170 bp):
ATAATTGATTTTAAGTTGAATTTTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTACC
TCAAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT
CGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
Found at i:14195 original size:686 final size:681
Alignment explanation
Indices: 10024--14755 Score: 3287
Period size: 686 Copynumber: 6.9 Consensus size: 681
10014 TTTGCTTCAG
* * * * * * * * *
10024 GAAACATG-AAGTGAAAGC-CATCCATTAACAAGAAAGTTCTATTTATATTCA-ACATACCATCG
1 GAAACATGAAAG-CAAAGCTCATCCATTGACAAGAAAGGTCCATTTATAGTCACTCATGCCTTCT
* * * * * * * * * *
10086 AAAGCCCTAATGCTCACTATAAATGGTTTTATAAAT-TCATAACTAATTTTAAGTTAAATTTTTT
65 AAAGCCTTATTACTCGCTTTAAATGGTTTTAT-AATCTCATAATTGATTTTAAATTGAACTTTTT
* * * * * * * * ** * *
10150 TAC-TATTTTAGTTAAAACAAATTATAATTAAATATCTG-CTCTGAAAAATGTGAGGTAAAAGCC
129 TACAT-TTTTAGTCAAATCAGATTGTAATTGAATGTATGCCT-TGAGAAACATGAAGCAAAAGCC
* * * ** * * *
10213 ACCCATTGACAAGAAAAGTCTATTTATAGCCACTTGTGACTTCGAAAGCATTATTACTCACTTTA
192 ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTA
* * * * * *
10278 AATGGTTTTATGATCTCATAATTAATTTTAAGTTG-AGCTTTTTCTAGAGTTTTGGTTAAAATAG
257 AATGGTTTTATAATCTCATAATTGATTTTAAGTTGAAG-TTTTT-TACATTTTTAGTTAAAACAG
* * * ** * * * ** * *
10342 ATTATAACTGAATGTTTACC-TAGGGAAACGTGAAGTAAAAGTCATCCATTGGTAAGAGAAGTCC
320 ATTACAATTGAATGTTTGCCTTA-AAAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCT
* * * * * * *
10406 ATTTATAGTCACTGATGCCATTGAAAGCCTTATTACT-TGCTTTCAATAGTTTTGTAATCTTATA
384 ATTCATAGTCACTCATGCCTTTGAAAGCCTTATTACTCAG-TTTAAATGGTTTTATAATCTTATA
* * * * * * *
10470 ATTGATTTTAAGATGAATTATTTTAC-ATTTTTAGTAAAA-ACAT-ATTA-T--A-ATTT--CT-
448 ATTGATTTTAAGTTGACTTTTTTTACAATTTTTATTAAAATAGATGATAATTGGATGTTTGCCTC
* * * * * * *
10525 AGGAAACAG-GAAGCGAAAGCCATCCATT-AGCACGAAAAGTCCATTTCTAATCACTCATACCAT
513 AGGAAAC-GTGAAGCAAAAGCCAT-CATTGA-CA-AAAAAGTCCATTTATAGTTACTCATGCCTT
* * * *
10588 CGAAAGCCTTATTACTTACTTTAAACGGTTTTATAATCAT-ATAAATT-ATTTTAAGTTTAATTT
574 TGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATC-TCAT-AATTGATTTTAAGTTGAA-TT
*** * * * * *
10651 TTTTTTGGTTTTCA-TTAAAATC-GATGATAATTTG-ATGTTTTGCTCGA
636 TTTTACAGTTTT-AGTTAAAA-CATATTATAA-TTGAATGTTCTCCT-AA
* * * * *
10698 GAAACAT-AAA-CAAAAGC-CATCCATTCACAAGAAAGGTCCATTCACAGTCAATCATGCCTTCA
1 GAAACATGAAAGC-AAAGCTCATCCATTGACAAGAAAGGTCCATTTATAGTCACTCATGCCTTCT
* * * **
10760 AAAGCCCTATTACTCGCTTTAAATGATTTTATAAAT-TCATAATTGATTTTAAGTTGAGTTTTTT
65 AAAGCCTTATTACTCGCTTTAAATGGTTTTAT-AATCTCATAATTGATTTTAAATTGAACTTTTT
* * * * * * * * *
10824 TAC-TTCTTTGGTCAAAACAGATTATAATTGAATGTCTACCCTAAGAAACGTAAAGCAAAAGCCA
129 TACATT-TTTAGTCAAATCAGATTGTAATTGAATGTATGCCTTGAGAAACATGAAGCAAAAGCCA
* * ** * *
10888 TCCATTGATAAGAAATGTTTATTTATAGTCACTCATTCCTTCGAAAGCATTATTACTCGCTTTAA
193 TCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAA
* * * * * * *
10953 ATAGTTTTATAATATCATAAATGATTTTAAGTAG-AGTTTCTTTGCATTTTTGGTTAAAACAAAT
258 ATGGTTTTATAATCTCATAATTGATTTTAAGTTGAAGTTT-TTTACATTTTTAGTTAAAACAGAT
* * * * * * * * *
11017 TATAATTGAATGTCTACCTCAAGAAACATGAAGGAAAAGCCATCCATTGGCTAGAAAAGTCCATT
322 TACAATTGAATGTTTGCCTTAAAAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATT
* * * * * *
11082 TATAGTCATTCATTCCTTCGAAAGCCTTATTACT-TGCTTTAAATGGTTTTATAATCTCATAATT
387 CATAGTCACTCATGCCTTTGAAAGCCTTATTACTCAG-TTTAAATGGTTTTATAATCTTATAATT
** * * * * * *
11146 GATTTTAAGCTAAAC--TTTTTACATTTTTTGTTAAAACAGATTATAGTT-AATTGTTTGCCT-A
451 GATTTTAAG-TTGACTTTTTTTACAATTTTTATTAAAATAGATGATAATTGGA-TGTTTGCCTCA
* * ** * * * * *
11207 GGGAATCGTGAAGTAAAAGCCATGCATTGGGAAAACAA-TTCATTTAGAGTCT-CTTATACCTTC
514 -GGAAACGTGAAGCAAAAGCCAT-CATTGACAAAA-AAGTCCATTTATAGT-TACTCATGCCTTT
* * * *
11270 GAAAGCCTTATTACT-AGGTTTAAATAGTTTTATAGTCTCATACTTGATTTTAAGTTGAATTTTT
575 GAAAGCCTTATTACTCA-CTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAA-TTTT
* * * * * *
11334 TTGATATTTTTCA-TTAAAATAGATTAGAATTGAATGTT-TGTCT-A
638 TT-ACAGTTTT-AGTTAAAACATATTATAATTGAATGTTCT-CCTAA
* * * * * **
11378 GAAAAATGTGAAGTGAAAGCT-ATCCATTGACAAGAAAAGTCCTTTTATAGT-AGCTCACCCCTT
1 GAAACATG-AAAG-CAAAGCTCATCCATTGACAAGAAAGGTCCATTTATAGTCA-CTCATGCCTT
* * ** * * * **
11441 CAAAAGCCTTATTACTCACTTTAAA-GGATTTTACGACCTTATAAACT-A-TTTATTTTGAA-TT
63 CTAAAGCCTTATTACTCGCTTTAAATGG-TTTTATAATCTCAT-AATTGATTTTAAATTGAACTT
*** * * * * * * * ** * *
11502 TTTTTGGTTATCATTAAAAT-AGA-TGATAATTGGATATTTAACTTGGGAAACATGAAGCAAAAA
126 TTTTACATTTTTAGTCAAATCAGATTG-TAATTGAATGTATGCCTTGAGAAACATGAAGCAAAAG
* * * * *
11565 TCATCCATTGACAAGAAAAGTCTATTTATAGTCAATCATACCTTCAAAAG-CTTAATTACTCGCT
190 CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTT-ATTACTCGCT
* * * *
11629 TTAAATGGTTTTATAAAT-TCATAATTGAGTATAAGTTGAA-TGTTTTTAC-TATTTTGGGTAAA
254 TTAAATGGTTTTAT-AATCTCATAATTGATTTTAAGTTGAAGT-TTTTTACAT-TTTTAGTTAAA
* * * * * * * * *
11691 ACAGATTATAATTGAATGTCTGCCCTGAGAAGCATCAAGCAAAAGCCACCCATTGGCAAGAAAAG
316 ACAGATTACAATTGAATGTTTGCCTTAAAAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAG
* * * ** * * *
11756 TCCATTTATAGCCACTCATGCCTTCAAAAGCCTTATTACTTGCA--TAAAATGATTTTGTAAT-T
381 TCTATTCATAGTCACTCATGCCTTTGAAAGCCTTATTAC-T-CAGTTTAAATGGTTTTATAATCT
* * ** ** * *
11818 TCATAATTGATTTTAAGTTGAATTTTTTTTTTC-ATTTTGGGCTT-AAACGGATTATAATTGAAT
444 T-ATAATTGATTTTAAGTTG-A-CTTTTTTTACAATTTT--TATTAAAATAGATGATAATTGGAT
* * * * * ** * *
11881 ATTTATCAT-AGGAAATGTGGAGTGAAAGCCATCCATTGACATGAAAAGTCCATTTATAGTCACT
504 GTTT-GCCTCAGGAAACGTGAAGCAAAAGCCAT-CATTGACA-AAAAAGTCCATTTATAGTTACT
* * * * *
11945 AATGCCATTAAAAGCCTTGTTACTTACTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTT
566 CATGCCTTTGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTT
*
12010 GAATTCTTTTACATTTTTAGTTAAAACATATTATAATTGAATG-TCTGCCTCAA
631 GAATT-TTTTACAGTTTTAGTTAAAACATATTATAATTGAATGTTCT-CCT-AA
* * * * * * *
12063 AAAACATGTCGAA--AAAGCT-ATCAATTGGCAAGAAAAGTTCATTTATAGTCACTCACGCCTTC
1 GAAACATG--AAAGCAAAGCTCATCCATTGACAAGAAAGGTCCATTTATAGTCACTCATGCCTTC
* * * * * * * * * * **
12125 GAAGGCTTTATTACTTGC-ATAAGATAGTTTTGTAATCTTATAATTGATTTTGAGTTGAGTTTTT
64 TAAAGCCTTATTACTCGCTTTAA-ATGGTTTTATAATCTCATAATTGATTTTAAATTGAACTTTT
* * * * ** ** *
12189 TTACA-TTTTGGGCAAA-AACATAT-TAATTGAATGT-TTACTACAGGAAACATGAAGTAAAAGC
128 TTACATTTTTAGTCAAATCAGAT-TGTAATTGAATGTATGCCTTGA-GAAACATGAAGCAAAAGC
* * *
12250 CATCCATTGACATGGAGAA-TCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCGCTT
191 CATCCATTGACA-AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTT
* * *
12314 AAAATGGTTTTATAATCTCATAATTGATTTTAAATTGAATGTTTTTTTACATTTTTAGTTCAAAC
255 TAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAA-G-TTTTTTACATTTTTAGTTAAAAC
* * * * * *
12379 ATAATATAATTGAATGTTTGCCTTAAGAAACATGAAGTAAAAGCCATCCATTGATAAGAAAAGTC
318 AGATTACAATTGAATGTTTGCCTTAAAAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTC
* * * * * * * * *
12444 CATTTATAGTCACTCATGACTTTGAAAGCATTATTAATCACTTGAAATGGTTTTATAATATTGTA
383 TATTCATAGTCACTCATGCCTTTGAAAGCCTTATTACTCAGTTTAAATGGTTTTATAATCTTATA
* * * * *
12509 ATTGATTTTAAGTAGA-ATTTTTTAC-ATTTTTGATTAAAACAGATGACAATTGAATGTTTGCCT
448 ATTGATTTTAAGTTGACTTTTTTTACAATTTTT-ATTAAAATAGATGATAATTGGATGTTTGCC-
* * * * *
12572 TC-GGAAACATGAAGCAAAAGCCACCAATTGACATGAAAAGTCCATTTGTAGTCACTCATGCCTT
511 TCAGGAAACGTGAAGCAAAAGCCATC-ATTGACA-AAAAAGTCCATTTATAGTTACTCATGCCTT
* * * *
12636 TGAAAGCCTTATTACTAACTTTAAACT-ATTTTATAATCTTATGAATT-ATTTTAAGCTGAATTG
574 TGAAAGCCTTATTACTCACTTTAAA-TGGTTTTATAATCTCAT-AATTGATTTTAAGTTGAATT-
** * * * * *
12699 TTTT-CAGTTTTCA-TTAAAGTAGATGATAATTGGATGTTTTCCTCAT
636 TTTTACAGTTTT-AGTTAAAACATATTATAATTGAATGTTCTCCT-AA
* ** * *
12745 G--ACATGAGAAGCAAATGCT-GTCTGTTGA-ATAGAAAAGTCCATTTATAGTCAATCATGCCTT
1 GAAACATGA-AAGCAAA-GCTCATCCATTGACA-AGAAAGGTCCATTTATAGTCACTCATGCCTT
* * * * * *
12806 CGAAAGCCCTATTACTTGCTTTACATGGTTTTATAAAT-TCATAATT-AATTTAAGTTGAACTTT
63 CTAAAGCCTTATTACTCGCTTTAAATGGTTTTAT-AATCTCATAATTGATTTTAAATTGAACTTT
* * * * * * * * *
12869 TTTAC-TATTTTGGTTAAAACAGATTGTGATTGAATGTTTGCCTTAATAAACTTGAAACAAAAGC
127 TTTACAT-TTTTAGTCAAATCAGATTGTAATTGAATGTATGCCTTGAGAAACATGAAGCAAAAGC
* * * * * *
12933 CA-CCAATTAATAAGAAAAGTCTATTTATAGTCACTTATGCCTTCGAAAGCCTTATTACTTGTTT
191 CATCC-ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTT
* *
12997 TAAATGGCTTTATAATCTCATAATTGATTTTAAGTTGAA-TTGGTTTTACATTTTTAGTTAAAAT
255 TAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAAGTT--TTTTACATTTTTAGTTAAAAC
* * ** * * * * * *
13061 AGATTGCAATTAAAAATCTCCCTCAAAAAACATGAAGAAAAAGCCATCCCTTGGCAAGAAAAGTC
318 AGATTACAATTGAATGTTTGCCTTAAAAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTC
* * * * *
13126 TATTTATAGTCACTCATTCTTTTGAAAGCCTTATTACTCAGTTTAAATGGTTTTATAGTCTTGTA
383 TATTCATAGTCACTCATGCCTTTGAAAGCCTTATTACTCAGTTTAAATGGTTTTATAATCTTATA
* * * * * *
13191 ATTGATTTTAGGTTCAAC-TTTTTTACATTTTTTATTAAAATAGATTATAGTT-GATTGTTTGCT
448 ATTGATTTTAAGTT-GACTTTTTTTACAATTTTTATTAAAATAGATGATAATTGGA-TGTTTGCC
* * * * *
13254 TCAGGAAACGTGAAGCAAAAGCTATGCATTGACAAGAAAAGTTCATATATAGTCT-CTTATGCTT
511 TCAGGAAACGTGAAGCAAAAGCCAT-CATTGACAA-AAAAGTCCATTTATAGT-TACTCATGCCT
** * *
13318 TTGAAAGCCTTATTACTCGGTTTAAATGGTTTTATATTCTCATAATTGATTTTGAGTTGAATTTT
573 TTGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAA-TTT
* ** ** *
13383 TTTACATTTTTAGAAAAAAGTTGATTATAAATGAATGTTCTCCTCAA
637 TTTACAGTTTTAGTTAAAACAT-ATTATAATTGAATGTTCTCCT-AA
*
13430 GAAACATG-AAGCGAAAGC-CATCCATTGACAAG-AAGAGTCCATTTATAGTCACTCTTAG-CTT
1 GAAACATGAAAGC-AAAGCTCATCCATTGACAAGAAAG-GTCCATTTATAGTCACTCAT-GCCTT
* * * *
13491 -TGAAAGCCTTACTACTCGCTTTAAATGGTTTTATAATCTCGTCATTGATTTTAAACTGAA-TTA
63 CT-AAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAATTGAACTT-
* * * * ***
13554 TTTTACATTTTTTGTCAAATCATATTCTAATTGAATATCCACCTTGAGAAACATGAAGCAAAAGC
126 TTTTACATTTTTAGTCAAATCAGATTGTAATTGAATGTATGCCTTGAGAAACATGAAGCAAAAGC
* * * * *
13619 CATCCATTGACAA-AAGAAGTCCATTTATATTCACTCATGCCCTCGAAAGCATTATTTCTCACTT
191 CATCCATTGACAAGAA-AAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTT
* * * * *
13683 GAAATGATTTTGTAATCTCATAATTGATTTTAAGTTGAAGTTTTTTACATTTTTGGTTAAACCAG
255 TAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAAGTTTTTTACATTTTTAGTTAAAACAG
** * * * * *
13748 ATTACAATTGAATGTTTGCCTTAGGAAACATGAAGCGAAGGCCATCCATTGACACGGAAGGTCTA
320 ATTACAATTGAATGTTTGCCTTAAAAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTA
* * * *
13813 TTCGTAGTCACTCATGCCTTTGAAAGTCTTATTACTTATTTTAAATGGTTTTATAATCTTATAAA
385 TTCATAGTCACTCATGCCTTTGAAAGCCTTATTACTCAGTTTAAATGGTTTTATAATCTTAT-AA
* *
13878 TT-ATTTTAAGTTGACTTTTTTTATTCAATTTTTATTAAAATAGATGATACTTGGATGTTTACCT
449 TTGATTTTAAGTTGACTTTTTTTA--CAATTTTTATTAAAATAGATGATAATTGGATGTTTGCCT
* * * * * **
13942 CAAGAAACGTGAAGCAAATGCCATCTGTTGACCAAAAAAGTCCATTTATAATTAGTCATGCCTCC
512 CAGGAAACGTGAAGCAAAAGCCATC-ATTGA-CAAAAAAGTCCATTTATAGTTACTCATGCCTTT
* * *
14007 AAAAGTCC-TATTACTCATTTTAAATGGTTTTATAAAT-TCATAATTGATTTTAAATTGAATATT
575 GAAAG-CCTTATTACTCACTTTAAATGGTTTTAT-AATCTCATAATTGATTTTAAGTTGAAT-TT
* * *
14070 TTTACTA-TTTTGGTTAAAACATATTATAATTGAATGTATGTCCTGA
637 TTTAC-AGTTTTAGTTAAAACATATTATAATTGAATGT-TCTCCTAA
* * * *** * *
14116 GAAACA-GAAAGTAAAACTCACCCATTGACAAGAAAGGTCTGCTTCTAGTCACTAATGCCTTCTA
1 GAAACATGAAAGCAAAGCTCATCCATTGACAAGAAAGGTCCATTTATAGTCACTCATGCCTTCTA
* * * *
14180 AAGCATTATTACTCGCTTTAAATGGTTTTATAATCTCATAATCGATTTTTAATTGAATTTTTTTT
66 AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAATTGAA-CTTTTTT
* * **
14245 ACATTCTTAGTTCAAAT-AGATTGTAATTGAATGTATGCC-TGGGAAACATGAAGCAAAAGCTGT
130 ACATTTTTAG-TCAAATCAGATTGTAATTGAATGTATGCCTTGAGAAACATGAAGCAAAAGCCAT
** * * *
14308 CCATTGGTAAGAAAAATCCATTTATAGTCACTCATGCTTTTGAAAGCCTTATTACTCGCTTTAAA
194 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAA
* * * * *
14373 TGGTTTTATAATCTCATAATTCATTTTAACTTGAATTTTTTTACATTTTTGGTTAAAAAAGATTA
259 TGGTTTTATAATCTCATAATTGATTTTAAGTTGAAGTTTTTTACATTTTTAGTTAAAACAGATTA
* * * * * * *
14438 TAATTGATTGTTTGCCTTCAAAAACATGAAGCAAAAACTATGCATTGACAAAAAAAGT-TCATTC
324 CAATTGAATGTTTGCCTTAAAAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCT-ATTC
* * *
14502 ATACTCACTCATGCCTTTGAAAGCCTTATTACTCAGTTTAAATGATTTTATAATCTCATAATTGA
388 ATAGTCACTCATGCCTTTGAAAGCCTTATTACTCAGTTTAAATGGTTTTATAATCTTATAATTGA
* * * * * * * ** * *
14567 TTTTCACTTGAATTTTTTTA-AATGTCTAGTGAAAGTAGAAT-ATAATTCAATGTTTACCAT-AA
453 TTTTAAGTTGACTTTTTTTACAATTTTTA-TTAAAATAG-ATGATAATTGGATGTTTGCC-TCAG
* * * * * *
14629 GAAACATAAAGCAAAAGACATCTATTGA-AATGAAAAGTCCATTTATAGTAACTCATACCTTCGA
515 GAAACGTGAAGCAAAAGCCATC-ATTGACAA--AAAAGTCCATTTATAGTTACTCATGCCTTTGA
* * * *
14693 AAGCCTTATTACTCTCTTTAAATGATTTTATATTCTTATAAATT-ATTTTAAGTT-ATATTTTTT
577 AAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCAT-AATTGATTTTAAGTTGA-ATTTTTT
14756 TNNNNNNNNN
Statistics
Matches: 3233, Mismatches: 651, Indels: 339
0.77 0.15 0.08
Matches are distributed among these distances:
672 6 0.00
673 180 0.06
674 210 0.06
675 3 0.00
676 1 0.00
677 1 0.00
679 11 0.00
680 266 0.08
681 119 0.04
682 339 0.10
683 624 0.19
684 349 0.11
685 271 0.08
686 642 0.20
687 193 0.06
688 18 0.01
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.38
Consensus pattern (681 bp):
GAAACATGAAAGCAAAGCTCATCCATTGACAAGAAAGGTCCATTTATAGTCACTCATGCCTTCTA
AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAATTGAACTTTTTTA
CATTTTTAGTCAAATCAGATTGTAATTGAATGTATGCCTTGAGAAACATGAAGCAAAAGCCATCC
ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATG
GTTTTATAATCTCATAATTGATTTTAAGTTGAAGTTTTTTACATTTTTAGTTAAAACAGATTACA
ATTGAATGTTTGCCTTAAAAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTCATA
GTCACTCATGCCTTTGAAAGCCTTATTACTCAGTTTAAATGGTTTTATAATCTTATAATTGATTT
TAAGTTGACTTTTTTTACAATTTTTATTAAAATAGATGATAATTGGATGTTTGCCTCAGGAAACG
TGAAGCAAAAGCCATCATTGACAAAAAAGTCCATTTATAGTTACTCATGCCTTTGAAAGCCTTAT
TACTCACTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTACAGTTTTAGT
TAAAACATATTATAATTGAATGTTCTCCTAA
Found at i:15689 original size:172 final size:168
Alignment explanation
Indices: 15394--15790 Score: 406
Period size: 172 Copynumber: 2.3 Consensus size: 168
15384 CAAAAGTCTT
* * * * * * * *
15394 TTTAAACGATTTTATAATCTTATAAATTATTTTAAGTTGAATTTTTTTCAGTTTTTGTTAAAATA
1 TTTAAATGGTTTTATAATATCATAAATGATTTTAAGTTGAATTTTTTACAGTTTTTGTCAAAACA
* * * * *
15459 GATGATAATTGGATGTTTGCCTCAGAAAAGCAAAGCAAAAGACATCCATTGACAAGAAAAGTCCA
66 GATGATAATTGAATGTTTCCCTAAGAAAAG-AAAGCAAAAGACATCCATTCACAAGAAAAGGCCA
* *
15524 -TTCACACTCAATCATGCATTCGAAAGCCCAATTATTTGC
130 CTT-ACACTCAATCATACATTCGAAAGCCCAATTACTTGC
**
15563 TTTAAATGGTTTTATAA-ATTCATAAATGATTTTAAGTTGAATTGTTTTACTTTTTTTTGTCAAA
1 TTTAAATGGTTTTATAATA-TCATAAATGATTTTAAGTTGAATT-TTTTAC-AGTTTTTGTCAAA
* *
15627 ACAGATTATAATTGAATATTTTCCCTAAGAAACATG-AAGCAAAA-ACTATCCATTCACAAGAAA
63 ACAGATGATAATTGAAT-GTTTCCCTAAGAAA-A-GAAAGCAAAAGAC-ATCCATTCACAAGAAA
* * * * ***** *
15690 AGGCCACTTATAGTCACTCATACCTTCGAAAGTGTTGTTACTTGT
124 AGGCCACTTACACTCAATCATACATTCGAAAGCCCAATTACTTGC
*
15735 TTTAAATGGTTTTATAATATCATAATTGATTTTAAGTTGAATTTCTTTACAGTTTT
1 TTTAAATGGTTTTATAATATCATAAATGATTTTAAGTTGAATTT-TTTACAGTTTT
15791 GGTTAAGCCA
Statistics
Matches: 186, Mismatches: 32, Indels: 18
0.79 0.14 0.08
Matches are distributed among these distances:
169 37 0.20
170 5 0.03
171 31 0.17
172 108 0.58
173 4 0.02
174 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.39
Consensus pattern (168 bp):
TTTAAATGGTTTTATAATATCATAAATGATTTTAAGTTGAATTTTTTACAGTTTTTGTCAAAACA
GATGATAATTGAATGTTTCCCTAAGAAAAGAAAGCAAAAGACATCCATTCACAAGAAAAGGCCAC
TTACACTCAATCATACATTCGAAAGCCCAATTACTTGC
Found at i:16105 original size:170 final size:170
Alignment explanation
Indices: 15418--16116 Score: 440
Period size: 171 Copynumber: 4.1 Consensus size: 170
15408 TAATCTTATA
* * * * *
15418 AATT-ATTTTAAGTTGAATTTTTTT-CAGTTTTTGTTAAAATAGATGATAATTGGATGTTTGCCT
1 AATTGATTTTAAGTTGAATTTTTTTACAGTTTTGGTTGAAACAGATTATAATTGGAT-TTTACCT
* * *
15481 CAGAAA-AGCAAAGCAAAAGAC-ATCCATTGACAAGAAAAGTCCATTCA-CACTCAATCATGCAT
65 AAGAAACA-CAAAGCAAAAG-CTATCCATTGACAAGAAAAGTCCATTCATGACTCAATCATGCCT
* * *
15543 TCGAAAGCCCAATTATTTGCTTTAAATGGTTTTATAAATTCAT
128 TCGAAAGACCTATTACTTGCTTTAAATGGTTTTATAAATTCAT
* * ** * ** * *
15586 AAATGATTTTAAGTTGAATTGTTTTACTTTTTTTTGTCAAAACAGATTATAATTGAATATTTTCC
1 AATTGATTTTAAGTTGAATTTTTTTAC-AGTTTTGGTTGAAACAGATTATAATTG--GATTTTAC
** * * * * * *
15651 CTAAGAAACATGAAGCAAAAACTATCCATTCACAAGAAAAGGCCACTT-AT-AGTCACTCATACC
63 CTAAGAAACACAAAGCAAAAGCTATCCATTGACAAGAAAAGTCCA-TTCATGACTCAATCATGCC
*** * *
15714 TTCGAAAGTGTTGTTACTTGTTTTAAATGGTTTTAT-AATATCAT
127 TTCGAAAGACCTATTACTTGCTTTAAATGGTTTTATAAAT-TCAT
* * * ***
15758 AATTGATTTTAAGTTGAATTTCTTTACAGTTTTGGTT-AAGCCATATTATAATT-GATTGNNNNN
1 AATTGATTTTAAGTTGAATTTTTTTACAGTTTTGGTTGAA-ACAGATTATAATTGGATT---TTA
***** * ** * * * * *
15821 NNNNNGAAACATAAAGTGAAAGCCATGCATTGATAAGAAAAGTTCGTTCATTG--TCACA-CATG
62 CCTAAGAAACACAAAGCAAAAGCTATCCATTGACAAGAAAAGTCCATTCA-TGACTCA-ATCATG
* * * ***********
15883 TCTTTGAAA-ACCTTATTACTCGCTTTAAATGGTTTNNNNNNNNNNC
125 CCTTCGAAAGACC-TATTACTTGCTTTAAATGGTTTTATAAATTCAT
*
15929 AATTGATTTTAAGTTGAATTTTTTTACA-TTTTGGTTGAAATAGATTATAATTGGATCTTTACCT
1 AATTGATTTTAAGTTGAATTTTTTTACAGTTTTGGTTGAAACAGATTATAATTGGAT-TTTACC-
* * * * *
15993 TGAGAAACACAAAGCGAAAGCTATCCATTGATAAGAAAAGTCTATTTATGA-TCAATCATGCCTT
64 TAAGAAACACAAAGCAAAAGCTATCCATTGACAAGAAAAGTCCATTCATGACTCAATCATGCCTT
* ** *
16057 TGAAAGGGCTATTACTTACTTTAAATGGTTTTATAAATTCAT
129 CGAAAGACCTATTACTTGCTTTAAATGGTTTTATAAATTCAT
*
16099 AATTGATTTTGAGTTGAA
1 AATTGATTTTAAGTTGAA
16117 NNNNNNNNNN
Statistics
Matches: 392, Mismatches: 112, Indels: 52
0.71 0.20 0.09
Matches are distributed among these distances:
168 6 0.02
169 22 0.06
170 112 0.29
171 139 0.35
172 108 0.28
173 5 0.01
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.37
Consensus pattern (170 bp):
AATTGATTTTAAGTTGAATTTTTTTACAGTTTTGGTTGAAACAGATTATAATTGGATTTTACCTA
AGAAACACAAAGCAAAAGCTATCCATTGACAAGAAAAGTCCATTCATGACTCAATCATGCCTTCG
AAAGACCTATTACTTGCTTTAAATGGTTTTATAAATTCAT
Found at i:17567 original size:171 final size:171
Alignment explanation
Indices: 17280--17887 Score: 609
Period size: 171 Copynumber: 3.6 Consensus size: 171
17270 TTGTAATCAT
* * * * * *
17280 ATAATTGATTTTAAGTTGAGTTCTTTTATATTTTTGAATAA-AATAGATTATAATTGAATGTCTG
1 ATAATTGATTTTAAGTTAAATTTTTTTATATTTTTCATTAACAACAGATTATAATTGAATGTCTG
* * * * ** * *
17344 C-CATAGGCAACGTAAAGAAAAAGCCATTCATTGGTAAGAAAAATCCATTTATAGTCACTCATAC
66 CTCA-A-GAAATGTGAAGAAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATAC
* * * * *
17408 TTTTGAAATCCTTATTACTCGCTTTAAATGGCTTTATTATCTC
129 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* * * *
17451 CTAATTGATTTTAAGTTGAATTGTTTTATAGTTTTT-ATTCA-AACAGATTATAATTGAATGTCT
1 ATAATTGATTTTAAGTTAAATTTTTTTATA-TTTTTCATTAACAACAGATTATAATTGAATGTCT
* * * *
17514 AGCTCAAGAAATATGAAGAAAAAGTCATCCATTAACAAGAAAAGTCTATTTATAGTCACTCATTC
65 -GCTCAAGAAATGTGAAGAAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATAC
* * * *
17579 CTTCAAAAGCTTTATTACTGGCCTTAAATGGTTTTATAATCTC
129 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* * ** * * * *
17622 ATAATTGATTTTGAGTTAAATTTTTTTACATTTTTTGTT-AGAACAGATTATAGTTGATTGTTTG
1 ATAATTGATTTTAAGTTAAATTTTTTTATATTTTTCATTAACAACAGATTATAATTGAATGTCTG
** * * * *
17686 CCTTGAGAAATGTGAAGCAAAAGCCATGCATTGACAACAAAAGT-TCATTTATAGTTACTCATAC
66 -CTCAAGAAATGTGAAGAAAAAGCCATCCATTGACAAGAAAAGTCT-ATTTATAGTCACTCATAC
* *
17750 CTTCGAAAGCCTTATTACTCGGTTTAAATGGTTTTATAATCTT
129 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
* * *
17793 ATAATTGATTTTCAGTTAAATTTTTTTAAATTTTTCA-TAACAACAGATTATAATTGAATGTTTA
1 ATAATTGATTTTAAGTTAAATTTTTTTATATTTTTCATTAACAACAGATTATAATTGAATGTCT-
* ** * *
17857 CCTTGAGAAACGTGAAGCAAAAGCCATCCAT
65 GCTCAAGAAATGTGAAGAAAAAGCCATCCAT
17888 ATTAGTGTAA
Statistics
Matches: 366, Mismatches: 62, Indels: 18
0.82 0.14 0.04
Matches are distributed among these distances:
170 9 0.02
171 347 0.95
172 8 0.02
173 2 0.01
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (171 bp):
ATAATTGATTTTAAGTTAAATTTTTTTATATTTTTCATTAACAACAGATTATAATTGAATGTCTG
CTCAAGAAATGTGAAGAAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATACCT
TCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
Found at i:19793 original size:170 final size:170
Alignment explanation
Indices: 19458--19845 Score: 413
Period size: 170 Copynumber: 2.3 Consensus size: 170
19448 ATCCCCAAAA
* * * * ** * *
19458 ATCCATTAACAAGAAAAGTCTATTTGTAGTCACTCATTCAGTCGAAAGTATTATTACTCGTTTTA
1 ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCTTTCGAAAGCATTATTACTCGGTTTA
* * * * *** * *
19523 AATGGTTTTGTAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTCTTCATTAAAACATAT
66 AATAGTTTTATAAACTCATAATTCATTTTAAGGAAAATTCTTTTACATTCTTCATTAAAACAAAT
* * * * * *
19588 TATAATTGATTATCTACCTACGAAATGTGAAGAAAAAGCT
131 TATAATTAAATATCTACCTAAGAAACGTAAAGAAAAAGCC
* *
19628 ATCCATTGACAA-AACAAGTCCATTTATAGTCACTCATGCTTTCGAAAGCCTTATTACTTGGTTT
1 ATCCATTGACAAGAA-AAGTCCATTTATAGTCACTCATGCTTTCGAAAGCATTATTACTCGGTTT
* * **
19692 AAATAGTTTTATAAACTCATAATTCATTTTAAGGAAAATTCTTTTGCATTTTTGGTTAAAA-AAA
65 AAATAGTTTTATAAACTCATAATTCATTTTAAGGAAAATTCTTTTACATTCTTCATTAAAACAAA
* *
19756 TTATAATTAAATGTCTACCTCAATAAACGTAAAGAAAAAGCC
130 TTATAATTAAATATCTACCT-AAGAAACGTAAAGAAAAAGCC
* * * *
19798 ATCTATTGGCAAGAAAAGTCCAGTTATAGTCAATCATGCCTTT-GAAAG
1 ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG-CTTTCGAAAG
19846 TGTCAGTTAA
Statistics
Matches: 179, Mismatches: 35, Indels: 8
0.81 0.16 0.04
Matches are distributed among these distances:
169 21 0.12
170 152 0.85
171 6 0.03
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (170 bp):
ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCTTTCGAAAGCATTATTACTCGGTTTA
AATAGTTTTATAAACTCATAATTCATTTTAAGGAAAATTCTTTTACATTCTTCATTAAAACAAAT
TATAATTAAATATCTACCTAAGAAACGTAAAGAAAAAGCC
Found at i:20552 original size:171 final size:170
Alignment explanation
Indices: 20149--24536 Score: 2972
Period size: 171 Copynumber: 25.8 Consensus size: 170
20139 TGAATTTTTT
* * *
20149 TATTTTAATCAACAATGTAAAAATATTCAACTTAAAA-CTAATTATGAGATTATAAAATCATTTA
1 TATTTTAACCAAAAATGTAAAAA-ATTCAACTTAAAATC-AATTATGAGATTATAAAACCATTTA
** * * * * *
20213 AAATGAGTAAT-AGGGTTGTTGAAGACAT-GAGTGACTATAAATAGACTTTTCTCT-CCAATGGA
64 AAGCGAGTAATAAGGCTT-TCGAAGGCATAG-GTGACTATAAATGGACTTTTCT-TGCCAATGAA
* * * * * * *
20275 TGACTTTTACTTTATGTATCTCGAGGCAGAG-ACTGAATTATAA-C
126 TGGCTTTTTCTTCATGTTTCTCAAGGCA-AGCATTCAATTATAATC
* * *
20319 ATATTTTAACCAACAATGTAAAAAAATTCAACTTAAAATCAATTATCATATTATAAAACCATTTA
1 -TATTTTAACCAAAAATGT-AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTA
* * *
20384 AAGCGAGTAATAAGGCCTTCGAAGGCATAGGTGACTATAAATGGACTTTTTTTTGTCAATGAATG
64 AAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGAC-TTTTCTTGCCAATGAATG
* ** **
20449 GCTTTTTTTTCATGTTTCTCAAGGCAAGCATTCAAAAATTGTC
128 GCTTTTTCTTCATGTTTCTCAAGGCAAGCATTCAATTATAATC
* * *
20492 TATTGTAACCAAAAATGTAAACCAA-TCAAACTTAAAATCAATTATGAGATTAT-TAACCATTT-
1 TATTTTAACCAAAAATGTAAA-AAATTC-AACTTAAAATCAATTATGAGATTATAAAACCATTTA
* ** * * * * *
20554 AAGACGAGTAATAAGGCTTTTGAAGGTTTAAGG-GATTATAAATGAACATTTCTTACCAATGGAT
64 AAG-CGAGTAATAAGGCTTTCGAAGGCAT-AGGTGACTATAAATGGACTTTTCTTGCCAATGAAT
* * * * *
20618 GGCTTTTGT-TTCACGTTTCCTGAA-G-TAGACATGCAATTATAATA
127 GGCTTTT-TCTTCATGTTT-CTCAAGGCAAG-CATTCAATTATAATC
* * *
20662 TATTTTAACTAAAAATGAATAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAT
1 TATTTTAACCAAAAATGTA-AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
* * * * * * *
20727 AGCGAGTAATCAA-CCTTTTGAAAG-ATTGAGTGAGTATAAATAGACTTTTCTTGCCAATGGATG
65 AGCGAGTAAT-AAGGCTTTCGAAGGCATAG-GTGACTATAAATGGACTTTTCTTGCCAATGAATG
* * * * *
20790 GCTTTTTCTTAACAT-TTCCT-TAGGCATA-CAATCAAATATTATC
128 GCTTTTTCTT--CATGTTTCTCAAGGCA-AGCATTCAATTATAATC
* * * * * *
20833 TATTTTAACAAAAAATGTAAAAAAGTCTAAGTTAAAATCAATTATAAAATTATAAAACTATTTAA
1 TATTTTAACCAAAAATGTAAAAAATTC-AACTTAAAATCAATTATGAGATTATAAAACCATTTAA
* * * * * * *
20898 AACAAGTAATAAGGCTTTCAAAGGC-TTGAATGACTATAAATAGG-C--TT-TTGCCAGTGGATG
65 AGCGAGTAATAAGGCTTTCGAAGGCATAG-GTGACTATAAAT-GGACTTTTCTTGCCAATGAATG
* * * * * *
20958 GATTTTGCTTCATATTT-TCTAAGGTCGA-CATTCAATTGTAATA
128 GCTTTTTCTTCATGTTTCTC-AAGG-CAAGCATTCAATTATAATC
** * * ***
21001 TATTTTATGCAAAAATTTAAAAAAATTTAA-TCTAAAATCACCAATGAGATTATAAAACCATTTA
1 TATTTTAACCAAAAATGT-AAAAAATTCAACT-TAAAATCAATTATGAGATTATAAAACCATTTA
* * * * ** * *
21065 GAGTGGGTAATAAGGCTTTCAAAAAC-TTGAGTGACTATAAATGGACTTTTGTTGCCAATGAATG
64 AAGCGAGTAATAAGGCTTTCGAAGGCATAG-GTGACTATAAATGGACTTTTCTTGCCAATGAATG
* * ** * * * *
21129 GCTATTGCTTCATGTGCCT-AAAGCAAACATTCAATTTTAATA
128 GCTTTTTCTTCATGTTTCTCAAGGCAAGCATTCAATTATAATC
* * *
21171 TATTGTCACCAAAAATGTAAAAATATTCAACTTAAAATCAATTATGAGATTATAAAACCATTAAA
1 TATTTTAACCAAAAATGTAAAAA-ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
* * * * * * *
21236 AGCGAGTAATAAGGTTTTCGAAGGTATAAGTGACTGTAATTGGACTTTT-TTCTCCAATGGATGG
65 AGCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTTTTCTT-GCCAATGAATGG
* ** * *
21300 CTTTTGCTTCACATTTCAT-GAGG-TAGACATTCAATTATAATC
129 CTTTTTCTTCATGTTTC-TCAAGGCAAG-CATTCAATTATAATC
* * * *
21342 TATTTTAACAAACAACAT-AAAAAAATTCAACTTCAAATCAATTATGAGATTGTAAAACCATTTA
1 TATTTTAACCAA-AA-ATGTAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTA
* * * * *
21406 AAGTGAGTAATAAGGCTTTCGAAGGC-TTGAGTGACTGTAAATGGACTTTTCTTGCTAATGGATG
64 AAGCGAGTAATAAGGCTTTCGAAGGCATAG-GTGACTATAAATGGACTTTTCTTGCCAATGAATG
* * * * *
21470 GCTTTTGCTTTATGTTTC-CAAAGACAAACATTCAATTATAATA
128 GCTTTTTCTTCATGTTTCTC-AAGGCAAGCATTCAATTATAATC
* * * * *
21513 TATTTTAACAAAAAATGTAAAAATATTCAACTCAAATTCAATTATGAGATTATAAAACCAGTTCA
1 TATTTTAACCAAAAATGTAAAAA-ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
* * * * * * * * * * *
21578 AGCTAGTAATAAGACTTTCAAAGGTATGGGTCATTATAAATGGACTTTTTTTGCCAACGAGTGAC
65 AGCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGAATGGC
** * * * *
21643 -TTTTC--CATAGTTTCTTGA-G-TAGACATTCAAATATTATG
130 TTTTTCTTCAT-GTTTCTCAAGGCAAG-CATTCAATTATAATC
* * * * *
21681 TGTTTTAGCC-AAAATGTAAAAAATTCTAACTTAAAGTCAATTATGAAATTATAAAACCATTTGC
1 TATTTTAACCAAAAATGTAAAAAATTC-AACTTAAAATCAATTATGAGATTATAAAACCATTT-A
* * ** * * * * *
21745 AA-TGAATAATAAGGCTTTTAAAGGC-TTGAGTGACTATAAATAGA-TTTTTTTGATCAATGGAT
64 AAGCGAGTAATAAGGCTTTCGAAGGCATAG-GTGACTATAAATGGACTTTTCTTG-CCAATGAAT
* * * *
21807 GGCTTTTGCTTCACAT-TTTCTGAA-GCAAACATTCAATTATAATA
127 GGCTTTTTCTT--CATGTTTCTCAAGGCAAGCATTCAATTATAATC
** * * *
21851 TATTTTAA-GTAAAATGTAAAATGATTCAACTTAAAA-CTAATTATGAGATTATAAAACTATTCA
1 TATTTTAACCAAAAATGTAAAA-AATTCAACTTAAAATC-AATTATGAGATTATAAAACCATTTA
* * *********
21914 AAGCAAGTAATAAGGTTTTNNNNNNNNNNA-GTGACTATAAATGGACTTTTCTTGCCAAT-AGAT
64 AAGCGAGTAATAAGGCTTT-CGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGA-AT
* ** * * * * *
21977 GGCTTTTTGTTCACATTTCCCAAGACAAACATTCAATTAAAATT
127 GGCTTTTTCTTCATGTTTCTCAAGGCAAGCATTCAATTATAATC
* * * ********** *
22021 TGTTTTAATCAAAAATGTAAAAAAATTTANNNNNNNNNNAATTATGAGATTATAAAACTATTTAA
1 TATTTTAACCAAAAATGT-AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
* * * * * * * * * *
22086 AGGGAATAATAATGCTTTCGAGGGCATAAGTGACTATAAATAGACTTTCCTCT-CTACTGGATGG
65 AGCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTTTTCT-TGCCAATGAATGG
* * * * * *
22150 CTTTTGCTTCATATTTTTTAAGGC-AGACATTCAATTACAATT
129 CTTTTTCTTCATGTTTCTCAAGGCAAG-CATTCAATTATAATC
* * * ** * *
22192 TGTTTTAA-CAAACACTATAAAACAATTCAACCAAAAATCAATTATCAGATTATAAAAGCATTTA
1 TATTTTAACCAAA-AATGTAAAA-AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTA
* * * * * *
22256 AAGCAAGCAATAAGGCTTTCAAAGGTATGGGTGACTAT-AATAAGA-TATTTCTTAG-CAATGAA
64 AAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAAT-GGACT-TTTCTT-GCCAATGAA
* * * **
22318 TGGTTTTTTCTTAATATTTC-CTAATAC-AGACATTCAATTATAATC
126 TGGCTTTTTCTTCATGTTTCTC-AAGGCAAG-CATTCAATTATAATC
* * ** * * *
22363 TGTTTTAACTAAACATATAAAAAAAATTCAACTTAAAATCAATTATGAGATTATGAAACTATTCA
1 TATTTTAACCAAA-A-ATGTAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTA
* * * * ** *
22428 AAGCGAGTAATAAGGCTTTCGAAGGCTTAAGTGACTATAAATAGACTTTTTTTATCAATGGAT-G
64 AAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGAATGG
* * * * * *
22492 ATTTTTACTTCACGTTTC-CTAAAGTAGAG-ACTCAATTATAATA
129 CTTTTT-CTTCATGTTTCTC-AAGGCA-AGCATTCAATTATAATC
* * * *
22535 TATTTTAACAAAAAATGCATAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTAATTAA
1 TATTTTAACCAAAAATGTA-AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
** * * * *
22600 AGTAAGTAATAAGGC-TTCTGAAGGCATAAGTGGCTAGAAATGGACTTTTCTTGCCAATGAATGA
65 AGCGAGTAATAAGGCTTTC-GAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGAATGG
** *
22664 CTTTTTCTTCA-CATTC-CAAGG-TAGACATTCAATTATAATC
129 CTTTTTCTTCATGTTTCTCAAGGCAAG-CATTCAATTATAATC
* *
22704 TGTTTTAACTAAAATAT-TAAAAAATTCAACTTAAAATCAATGTATGAGATTATAAAACCATTTA
1 TATTTTAACCAAAA-ATGTAAAAAATTCAACTTAAAATCAAT-TATGAGATTATAAAACCATTTA
* * * * *
22768 AAGTGAGTAATAAGGCTTTCGAAGGCTTAAGTGATTATAAATGGACTTTTCTTGCCAATGGATGG
64 AAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGAATGG
* * * * *
22833 CTTTTACTTCACGTTTC-CTAAAGCAGAG-ACTCAATTATAATA
129 CTTTTTCTTCATGTTTCTC-AAGGCA-AGCATTCAATTATAATC
* ********** * *
22875 TA-TTTAACCAAAAATGCACAAAAATTCAACTTAAAATCAATTATGNNNNNNNNNNACTAATTAA
1 TATTTTAACCAAAAATGTA-AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
** * * * * * *
22939 AGTAAGTAATAAGGCTTTCAAAGGTATAGGTGATTATAAATGGACTTTTCATT-CTATTGAATGA
65 AGCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTTTTC-TTGCCAATGAATGG
* * * * * * *
23003 CTTTCTGTTCATATTTCCCAAGGGAAACATTTAATTATAATC
129 CTTTTTCTTCATGTTTCTCAAGGCAAGCATTCAATTATAATC
* * * * *
23045 TGTTTTAACCAAAAATGTAAAAATATTCAACCTAAAATTAATTATGAGATTGTTAAACCATTTAA
1 TATTTTAACCAAAAATGTAAAAA-ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
* * * * * * * * *
23110 AGCTAGTAATAAGGTCTTT-GAAGGCTTAGATGGCCACAAATAGG-CTTTTCTTGTCAATAAAAG
65 AGCGAGTAATAAGG-CTTTCGAAGGCATAGGTGACTATAAAT-GGACTTTTCTTGCCAATGAATG
* * * *
23173 GCTTTTTCTTCATGTTTCCCAATGC-AGATATTCAATTACAATC
128 GCTTTTTCTTCATGTTTCTCAAGGCAAG-CATTCAATTATAATC
* * ** * * * *
23216 TGTTTTAACTAAAAATGTGAAACCATTCATCCTAAAATCAGTTCTGAGATTATAAAACCATTTAA
1 TATTTTAACCAAAAATGT-AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
* * * * * * **
23281 AGCAAGTAATTAGGCTTTCGAAGGCATGGGTAAATATAAATGGATTTTTCTCACCAATGAATGGC
65 AGCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGAATGGC
* * * *** *
23346 TTTTTCTTCAAGTTGCTTAAGGTGGGCATTCAACTATAATC
130 TTTTTCTTCATGTTTCTCAAGGCAAGCATTCAATTATAATC
** * * *
23387 TATTTTAATAAAAAATGTAAAAAATTTAACATAAAATCAATTATGAGATTATAAAACCGTTTAAA
1 TATTTTAACCAAAAATGTAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAA
* * * * *
23452 GCGAGTAACATGGCTTT-TAAAG-ATATGAGTGACTATAAATGGACTTTTCTTGCCAATGAATGA
66 GCGAGTAATAAGGCTTTCGAAGGCATA-G-GTGACTATAAATGGACTTTTCTTGCCAATGAATGG
* * *
23515 CCTTTTCTTCATGTTT-TCTAAGGCAAACACTCAATTATAATC
129 CTTTTTCTTCATGTTTCTC-AAGGCAAGCATTCAATTATAATC
** * * * *
23557 TATTTTAATAAAAAATATAAAAAAATTTAACTTGAAATCAGTTATGAGATTATAAAACCATTTAA
1 TATTTTAACCAAAAATGT-AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
* * ** * * *
23622 AGCGAATAATAAGACTTTTAAAGGCATAGGTGATTATAAATAGACTTTTCTTGCCAATGAAAGGC
65 AGCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGAATGGC
* ** * *
23687 TTTTTCTTCATGTTTTTTGAGGCAAACATTCAATTATAATA
130 TTTTTCTTCATGTTTCTCAAGGCAAGCATTCAATTATAATC
** * * * * * *
23728 TGCTTTAACCAAAAATATGAAAAAATTGAAAC-TGAAATTAATTATGATATTACAAAACCATTTA
1 TATTTTAACCAAAAATGT-AAAAAATT-CAACTTAAAATCAATTATGAGATTATAAAACCATTTA
* * * * *
23792 AAGCGAGTAATTAGGCTTTCGAAGGCATGGGTAACTATAAATAGACATTTCTTGCCAATGAATGG
64 AAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGAATGG
* * * *
23857 CTTTTTCTTCATATTTCCTGAA-G-TAGACATTCAATTACAATC
129 CTTTTTCTTCATGTTT-CTCAAGGCAAG-CATTCAATTATAATC
* * ** * *
23899 TATTTTAAACAAAAATGTAAAAACATTGAACGCAAAATCAATTATGATATTATAAAACCATTCAA
1 TATTTTAACCAAAAATGTAAAAA-ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
* * * * * * * * * *
23964 AGTGGGTAATTAGGCTTTTGAAGGCATGGGTAACTATAAATTGACTTATCTTACCAATGAATGAC
65 AGCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGAATGGC
* * * *
24029 TTTTTCTTCATGTATC-CTGAGGTTGAA--ATTCAATTACAATC
130 TTTTTCTTCATGTTTCTC-AAGG--CAAGCATTCAATTATAATC
*
24070 TATTTTAAACAAAAATGTAAAAAAATTCAACTTAAAATC-ATTATGAGATTATAAAA-CATTTAA
1 TATTTTAACCAAAAATGT-AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
* * * * * **
24133 AGCGTGTAATAAGGCTTTCAAAGGCTTCGGTGTCTATAAATGGACTTTTCTTGCCAATGAATGTT
65 AGCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGAATGGC
* * *
24198 TTTTTCTTCATGTTTC-CTAAGGC-AGACAATCAATTCTAATA
130 TTTTTCTTCATGTTTCTC-AAGGCAAG-CATTCAATTATAATC
* ** * * * * **
24239 TCTTTTAAGAAAAAATATAAAAAAATTTAACTTAAAATAAATTATGAGGTTATAAAAGTATTTAA
1 TATTTTAACCAAAAATGT-AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
** * * * * * * * *
24304 A-ATAGTAATAAGGCTTTGGAAGGCTTGGGTGACTATAATTGGACTTTTCTTACCAACGAAAGGG
65 AGCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGAATGGC
** * *
24368 TTTTTCTTCACATTTC-CTAAGGCAAACATTCGA-T-T-A-C
130 TTTTTCTTCATGTTTCTC-AAGGCAAGCATTCAATTATAATC
** * * *
24405 -ATTTTAATTAAAAATATAAAAAATT-AATCTTAAAATCAATTATGATATTATAAAACTATTTAA
1 TATTTTAACCAAAAATGTAAAAAATTCAA-CTTAAAATCAATTATGAGATTATAAAACCATTTAA
* * ** * * * *
24468 AACGAGTAATTAGGCTTAT-GAAGGTGT-GGATAACAATAAATGGACTTTTCTAGCTAATGAATG
65 AGCGAGTAATAAGGCTT-TCGAAGGCATAGG-TGACTATAAATGGACTTTTCTTGCCAATGAATG
24531 GCTTTT
128 GCTTTT
24537 AACAAAAAAA
Statistics
Matches: 3324, Mismatches: 733, Indels: 326
0.76 0.17 0.07
Matches are distributed among these distances:
163 2 0.00
164 42 0.01
165 62 0.02
166 20 0.01
167 88 0.03
168 166 0.05
169 280 0.08
170 758 0.23
171 1610 0.48
172 272 0.08
173 21 0.01
174 3 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.34
Consensus pattern (170 bp):
TATTTTAACCAAAAATGTAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAA
GCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGAATGGCT
TTTTCTTCATGTTTCTCAAGGCAAGCATTCAATTATAATC
Found at i:23491 original size:512 final size:511
Alignment explanation
Indices: 20166--24536 Score: 2929
Period size: 512 Copynumber: 8.6 Consensus size: 511
20156 ATCAACAATG
* * * *** *
20166 TAAAAATATTCAACTTAAAA-CTAATTATGAGATTATAAAATCATTTAAAATGAGTAAT-AGGGT
1 TAAAAAAATTCAACCTAAAATC-AATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCT
* * * * * * * * *
20229 TGTTGAAGACATGAGTGACTATAAATAGACTTTTCTCT-CCAATGGATGACTTTTACTTTATGTA
65 T-TCGAAGGCATGGGTGACTATAAATGGACTTTTCT-TACCAATGAATGGCTTTTTCTTCAAGT-
** * * * ** *
20293 T-CTCGAGGCAGAGACTGAATTATAA-CATATTTTAACCAACAATGTAAAAAAATTCAACTTAAA
127 TCCTTAAGGCAGACATTCAATTATAATC-TATTTTAATAAAAAATGT-AAAAAATTCAACTTAAA
* * * * ** *
20356 ATCAATTATCATATTATAAAACCATTTAAAGCGAGTAATAAGGCCTTCGAAGGCAT-AGGTGACT
190 ATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTAAAGGTATGA-GTGACT
* ** * * * * *
20420 ATAAATGGACTTTTTTTTGTCAATGAATGGCTTTTTTTTCATGTTT-CTCAAGGCAAGCATTCAA
254 ATAAATGGAC-TTTTCTTACCAATGAATGACTTTTTCTTCATGTTTCCT-AAGGGAAACACTCAA
** ** * * ** *
20484 AAATTGTCTATTGTAACCAAAAATGTAAACCAA-TCAAACTTAAAATCAATTATGAGATTAT-TA
317 TTATAATCTATTTTAACAAAAAATGTAAAAAAATTC-AACTTAAAATCAATTATGAGATTATAAA
* * ** * * * * *
20547 ACCATTT-AAGACGAGTAATAAGGCTTTTGAAGGTTTA-AGGGATTATAAATGAACATTTCTTAC
381 ACCATTTAAAG-CTAGTAATAAGGC-TTTAAAGGCATAGATGG-CTATAAATGGACTTTTCTTGC
* * * * * * * *
20610 CAATGGATGGCTTTTGT-TTCACGTTTCCTGAA-GTAGACATGCAATTATAATATATTTTAACTA
443 CAATGAAAGGCTTTT-TCTTCATGTTTCC-CAAGGCAGACATTCAATTACAATATGTTTTAACTA
20673 AAAATGA
506 AAAAT-A
* * * * *
20680 -ATAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTATAGCGAGTAATCAA-CCT
1 TAAAAAAATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAAT-AAGGCT
* * * * * * * * *
20743 TTTGAAAG-ATTGAGTGAGTATAAATAGACTTTTCTTGCCAATGGATGGCTTTTTCTTAACATTT
65 TTCGAAGGCA-TGGGTGACTATAAATGGACTTTTCTTACCAATGAATGGCTTTTTCTTCA-AGTT
* * * * * * *
20807 CCTT-AGGCATACAATCAAATATTATCTATTTTAACAAAAAATGTAAAAAAGTCTAAGTTAAAAT
128 CCTTAAGGCAGACATTCAATTATAATCTATTTTAATAAAAAATGTAAAAAATTC-AACTTAAAAT
* * * * * *
20871 CAATTATAAAATTATAAAACTATTTAAAACAAGTAATAAGGCTTTCAAAGGCT-TGAATGACTAT
192 CAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTAAAGG-TATGAGTGACTAT
* * * * * * *** *
20935 AAATAGG-C--TT-TTGCCAGTGGATGGA-TTTTGCTTCATATTTTCTAAGGTCGACATTCAATT
256 AAAT-GGACTTTTCTTACCAATGAAT-GACTTTTTCTTCATGTTTCCTAAGGGAAACACTCAATT
* * * * * ***
20995 GTAATATATTTTATGC-AAAAATTTAAAAAAATTTAA-TCTAAAATCACCAATGAGATTATAAAA
319 ATAATCTATTTTA-ACAAAAAATGTAAAAAAATTCAACT-TAAAATCAATTATGAGATTATAAAA
* * ** * * *
21058 CCATTTAGAG-TGGGTAATAAGGCTTTCAAAAAC-TTGAGTGACTATAAATGGACTTTTGTTGCC
382 CCATTTAAAGCT-AGTAATAAGGCTTT-AAAGGCATAGA-TGGCTATAAATGGACTTTTCTTGCC
* * * * * * * ** * * * *
21121 AATGAATGGCTATTGCTTCATG-TGCCTAAAGCAAACATTCAATTTTAATATATTGTCACCAAAA
444 AATGAAAGGCTTTTTCTTCATGTTTCCCAAGGCAGACATTCAATTACAATATGTTTTAACTAAAA
*
21185 ATG
509 ATA
* * * * *
21188 TAAAAATATTCAACTTAAAATCAATTATGAGATTATAAAACCATTAAAAGCGAGTAATAAGGTTT
1 TAAAAAAATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTT
* ** * * * * * *
21253 TCGAAGGTATAAGTGACTGTAATTGGACTTTT-TTCTCCAATGGATGGCTTTTGCTTCACA-TTT
66 TCGAAGGCATGGGTGACTATAAATGGACTTTTCTT-ACCAATGAATGGCTTTTTCTTCA-AGTTC
* * * * * *
21316 CATGAGGTAGACATTCAATTATAATCTATTTTAACAAACAACAT-AAAAAAATTCAACTTCAAAT
129 CTTAAGGCAGACATTCAATTATAATCTATTTTAATAAA-AA-ATGTAAAAAATTCAACTTAAAAT
* * * ** *
21380 CAATTATGAGATTGTAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCT-TGAGTGACTGT
192 CAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTAAAGG-TATGAGTGACTAT
* * * * * * * ** *
21444 AAATGGACTTTTCTTGCTAATGGATGGCTTTTGCTTTATGTTTCCAAAGACAAACATTCAATTAT
256 AAATGGACTTTTCTTACCAATGAATGACTTTTTCTTCATGTTTCCTAAGGGAAACACTCAATTAT
* * * * *
21509 AATATATTTTAACAAAAAATGTAAAAATATTCAACTCAAATTCAATTATGAGATTATAAAACCAG
321 AATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCAT
* * * * * *** * * *
21574 TTCAAGCTAGTAATAAGACTTTCAAAGGTATGGGTCATTATAAATGGACTTTTTTTGCCAACGAG
386 TTAAAGCTAGTAATAAGGCTTT-AAAGGCATAGATGGCTATAAATGGACTTTTCTTGCCAATGAA
* * *** * * ** * * * *
21639 TGAC-TTTTC--CATAGTTTCTTGA-GTAGACATTCAAATATTATGTGTTTTAGC-CAAAATG
450 AGGCTTTTTCTTCAT-GTTTCCCAAGGCAGACATTCAATTACAATATGTTTTAACTAAAAATA
* * * *
21697 T-AAAAAATTCTAACTTAAAGTCAATTATGAAATTATAAAACCATTTGCAATG-AA-TAATAAGG
1 TAAAAAAATTC-AACCTAAAATCAATTATGAGATTATAAAACCATTT--AAAGCAAGTAATAAGG
** * * * * * * * *
21759 CTTTTAAAGGCTTGAGTGACTATAAATAGA-TTTTTTTGATCAATGGATGGCTTTTGCTTCACAT
63 CTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTT-ACCAATGAATGGCTTTTTCTTCA-AG
* * * * *
21823 TTTCTGAA-GCAAACATTCAATTATAATATATTTTAAGT--AAAATGTAAAATGATTCAACTTAA
126 TTCCTTAAGGCAGACATTCAATTATAATCTATTTTAA-TAAAAAATGTAAAA-AATTCAACTTAA
* * *********
21885 AA-CTAATTATGAGATTATAAAACTATTCAAAGCAAGTAATAAGG-TTTTNNNNNNNNNNAGTGA
189 AATC-AATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTT-AAAGGTATGAGTGA
* * * ** * ** *
21948 CTATAAATGGACTTTTCTTGCCAAT-AGATGGCTTTTTGTTCACATTTCCCAAGACAAACATTCA
252 CTATAAATGGACTTTTCTTACCAATGA-ATGACTTTTTCTTCATGTTTCCTAAGGGAAACACTCA
* * * * **********
22012 ATTAAAATTTGTTTTAATC-AAAAATGTAAAAAAATTTANNNNNNNNNNAATTATGAGATTATAA
316 ATTATAATCTATTTTAA-CAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* ** * * * * * * *
22076 AACTATTTAAAGGGAATAATAATGCTTTCGAGGGCATA-AGTGACTATAAATAGACTTTCCTCT-
380 AACCATTTAAAGCTAGTAATAAGGCTTT-AAAGGCATAGA-TGGCTATAAATGGACTTTTCT-TG
* * * * * * *** *
22139 CTACTGGATGGCTTTTGCTTCATATTTTTTAAGGCAGACATTCAATTACAATTTGTTTTAAC-AA
442 CCAATGAAAGGCTTTTTCTTCATGTTTCCCAAGGCAGACATTCAATTACAATATGTTTTAACTAA
*
22203 ACACTA
507 A-AATA
* * * * *
22209 TAAAACAATTCAACCAAAAATCAATTATCAGATTATAAAAGCATTTAAAGCAAGCAATAAGGCTT
1 TAAAAAAATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTT
* * * * * * *
22274 TCAAAGGTATGGGTGACTAT-AATAAGA-TATTTCTTAGCAATGAATGGTTTTTTCTTAATATTT
66 TCGAAGGCATGGGTGACTATAAAT-GGACT-TTTCTTACCAATGAATGGCTTTTTCTTCA-AGTT
** * * **
22337 CC-TAATACAGACATTCAATTATAATCTGTTTTAACTAAACATATAAAAAAAATTCAACTTAAAA
128 CCTTAAGGCAGACATTCAATTATAATCTATTTTAA-TAAA-AAATGTAAAAAATTCAACTTAAAA
* * ** *
22401 TCAATTATGAGATTATGAAACTATTCAAAGCGAGTAATAAGGCTTTCGAAGGCT-TAAGTGACTA
191 TCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTAAAGG-TATGAGTGACTA
* * * * * * * * *
22465 TAAATAGACTTTTTTTATCAATGGATGA-TTTTTACTTCACGTTTCCTAAAGTAGAGACTCAATT
255 TAAATGGACTTTTCTTACCAATGAATGACTTTTT-CTTCATGTTTCCTAAGGGAAACACTCAATT
* * * *
22529 ATAATATATTTTAACAAAAAATGCATAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACT
319 ATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACC
* * *
22594 AATTAAAG-TAAGTAATAAGGCTTCTGAAGGCATA-AGTGGCTAGAAATGGACTTTTCTTGCCAA
384 ATTTAAAGCT-AGTAATAAGGCTT-TAAAGGCATAGA-TGGCTATAAATGGACTTTTCTTGCCAA
* * ** * * *
22657 TGAATGACTTTTTCTTCA-CATT-CCAAGGTAGACATTCAATTATAATCTGTTTTAACT-AAAAT
446 TGAAAGGCTTTTTCTTCATGTTTCCCAAGGCAGACATTCAATTACAATATGTTTTAACTAAAAAT
22719 A
511 A
* * **
22720 TTAAAAAATTCAACTTAAAATCAATGTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCT
1 TAAAAAAATTCAACCTAAAATCAAT-TATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCT
* ** * * * * *
22785 TTCGAAGGCTTAAGTGATTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTACTTCACGTTTC
65 TTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTACCAATGAATGGCTTTTTCTTCAAG-TTC
* * * * ** *
22850 C-TAAAGCAGAGACTCAATTATAATATA-TTTAACCAAAAATGCACAAAAATTCAACTTAAAATC
129 CTTAAGGCAGACATTCAATTATAATCTATTTTAATAAAAAATGTA-AAAAATTCAACTTAAAATC
********** * ** * *
22913 AATTATGNNNNNNNNNNACTAATTAAAGTAAGTAATAAGGCTTTCAAAGGTAT-AGGTGATTATA
193 AATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTAAAGGTATGA-GTGACTATA
* * * * * * * *
22977 AATGGACTTTTCATT-CTATTGAATGACTTTCTGTTCATATTTCCCAAGGGAAACATTTAATTAT
257 AATGGACTTTTC-TTACCAATGAATGACTTTTTCTTCATGTTTCCTAAGGGAAACACTCAATTAT
* * * * * * *
23041 AATCTGTTTTAACCAAAAATGTAAAAATATTCAACCTAAAATTAATTATGAGATTGTTAAACCAT
321 AATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCAT
* * * * * *
23106 TTAAAGCTAGTAATAAGGTCTTTGAAGGCTTAGATGGCCACAAATAGG-CTTTTCTTGTCAATAA
386 TTAAAGCTAGTAATAAGG-CTTTAAAGGCATAGATGGCTATAAAT-GGACTTTTCTTGCCAATGA
* * * *
23170 AAGGCTTTTTCTTCATGTTTCCCAATGCAGATATTCAATTACAATCTGTTTTAACTAAAAATG
449 AAGGCTTTTTCTTCATGTTTCCCAAGGCAGACATTCAATTACAATATGTTTTAACTAAAAATA
* ** * * * *
23233 TGAAACCATTCATCCTAAAATCAGTTCTGAGATTATAAAACCATTTAAAGCAAGTAATTAGGCTT
1 TAAAAAAATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTT
* * * * *
23298 TCGAAGGCATGGGTAAATATAAATGGATTTTTCTCACCAATGAATGGCTTTTTCTTCAAGTTGCT
66 TCGAAGGCATGGGTGACTATAAATGGACTTTTCTTACCAATGAATGGCTTTTTCTTCAAGTTCCT
** * * * *
23363 TAAGGTGGGCATTCAACTATAATCTATTTTAATAAAAAATGTAAAAAATTTAACATAAAATCAAT
131 TAAGGCAGACATTCAATTATAATCTATTTTAATAAAAAATGTAAAAAATTCAACTTAAAATCAAT
** * * *
23428 TATGAGATTATAAAACCGTTTAAAGCGAGTAACATGGCTTTTAAAGATATGAGTGACTATAAATG
196 TATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTAAAGGTATGAGTGACTATAAATG
* * * *
23493 GACTTTTCTTGCCAATGAATGACCTTTTCTTCATGTTTTCTAAGGCAAACACTCAATTATAATCT
261 GACTTTTCTTACCAATGAATGACTTTTTCTTCATGTTTCCTAAGGGAAACACTCAATTATAATCT
* * * * *
23558 ATTTTAATAAAAAATATAAAAAAATTTAACTTGAAATCAGTTATGAGATTATAAAACCATTTAAA
326 ATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAA
* * * * ** *
23623 GCGAATAATAAGACTTTTAAAGGCATAGGTGATTATAAATAGACTTTTCTTGCCAATGAAAGGCT
391 GCTAGTAATAAGGC-TTTAAAGGCATAGATGGCTATAAATGGACTTTTCTTGCCAATGAAAGGCT
**** * * * *
23688 TTTTCTTCATGTTTTTTGAGGCAAACATTCAATTATAATATGCTTTAACCAAAAATA
455 TTTTCTTCATGTTTCCCAAGGCAGACATTCAATTACAATATGTTTTAACTAAAAATA
* * * * * * * * *
23745 TGAAAAAATTGAAACTGAAATTAATTATGATATTACAAAACCATTTAAAGCGAGTAATTAGGCTT
1 TAAAAAAATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTT
* * * * *
23810 TCGAAGGCATGGGTAACTATAAATAGACATTTCTTGCCAATGAATGGCTTTTTCTTCATATTTCC
66 TCGAAGGCATGGGTGACTATAAATGGACTTTTCTTACCAATGAATGGCTTTTTCTTCA-AGTTCC
* * * * **
23875 TGAA-GTAGACATTCAATTACAATCTATTTTAA-ACAAAAATGTAAAAACATTGAACGCAAAATC
130 TTAAGGCAGACATTCAATTATAATCTATTTTAATA-AAAAATGTAAAAA-ATTCAACTTAAAATC
* * * * * * * * * *
23938 AATTATGATATTATAAAACCATTCAAAGTGGGTAATTAGGCTTTTGAAGGCATGGGTAACTATAA
193 AATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTAAAGGTATGAGTGACTATAA
* * * * * *
24003 ATTGACTTATCTTACCAATGAATGACTTTTTCTTCATGTATCCTGAGGTTG-AA-ATTCAATTAC
258 ATGGACTTTTCTTACCAATGAATGACTTTTTCTTCATGTTTCCTAAGG--GAAACACTCAATTAT
24066 AATCTATTTTAA-ACAAAAATGTAAAAAAATTCAACTTAAAATC-ATTATGAGATTATAAAA-CA
321 AATCTATTTTAACA-AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCA
* * * *
24128 TTTAAAGCGT-GTAATAAGGCTTTCAAAGGCTTCGGTGTCTATAAATGGACTTTTCTTGCCAATG
385 TTTAAAGC-TAGTAATAAGGCTTT-AAAGGCATAGATGGCTATAAATGGACTTTTCTTGCCAATG
* ** * * * **
24192 AATGTTTTTTTCTTCATGTTTCCTAAGGCAGACAATCAATT-CTAATATCTTTTAAGAAAAAATA
448 AAAGGCTTTTTCTTCATGTTTCCCAAGGCAGACATTCAATTAC-AATATGTTTTAACTAAAAATA
* * * * **
24256 TAAAAAAATTTAACTTAAAATAAATTATGAGGTTATAAAAGTATTTAAA--ATAGTAATAAGGCT
1 TAAAAAAATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCA-AGTAATAAGGCT
* * * * * * *
24319 TTGGAAGGCTTGGGTGACTATAATTGGACTTTTCTTACCAACGAAAGGGTTTTTCTTCACATTTC
65 TTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTACCAATGAATGGCTTTTTCTTCA-AGTTC
* * * *
24384 C-TAAGGCAAACATTCGA-T-T-A-C-ATTTTAATTAAAAATATAAAAAATT-AATCTTAAAATC
129 CTTAAGGCAGACATTCAATTATAATCTATTTTAATAAAAAATGTAAAAAATTCAA-CTTAAAATC
* * * * * * * *
24442 AATTATGATATTATAAAACTATTTAAAACGAGTAATTAGGCTTATGAAGGTGTG-GATAACAATA
193 AATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTAAAGGTATGAG-TGACTATA
* *
24506 AATGGACTTTTC-TAGCTAATGAATGGCTTTT
257 AATGGACTTTTCTTA-CCAATGAATGACTTTT
24537 AACAAAAAAA
Statistics
Matches: 3039, Mismatches: 699, Indels: 248
0.76 0.18 0.06
Matches are distributed among these distances:
503 5 0.00
504 87 0.03
505 19 0.01
506 3 0.00
507 11 0.00
508 227 0.07
509 440 0.14
510 404 0.13
511 247 0.08
512 940 0.31
513 420 0.14
514 223 0.07
515 13 0.00
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34
Consensus pattern (511 bp):
TAAAAAAATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTT
TCGAAGGCATGGGTGACTATAAATGGACTTTTCTTACCAATGAATGGCTTTTTCTTCAAGTTCCT
TAAGGCAGACATTCAATTATAATCTATTTTAATAAAAAATGTAAAAAATTCAACTTAAAATCAAT
TATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTAAAGGTATGAGTGACTATAAATG
GACTTTTCTTACCAATGAATGACTTTTTCTTCATGTTTCCTAAGGGAAACACTCAATTATAATCT
ATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAA
GCTAGTAATAAGGCTTTAAAGGCATAGATGGCTATAAATGGACTTTTCTTGCCAATGAAAGGCTT
TTTCTTCATGTTTCCCAAGGCAGACATTCAATTACAATATGTTTTAACTAAAAATA
Found at i:25056 original size:469 final size:460
Alignment explanation
Indices: 24073--25233 Score: 1003
Period size: 469 Copynumber: 2.5 Consensus size: 460
24063 TACAATCTAT
** * **
24073 TTTAAACAAAAATGTAAAAAAATTCAACTTAAAATCATTATGAGATTATAAAACATTTAAAGCGT
1 TTTAAACAAAAAACTAAAAAAATTCAACTTAAAATAATTATGAGATTATAAAACATTTAAAGCAA
* * *** *
24138 GTAATAAGGCTTTCAAAGGCTTCGGTGTCTATAAATGGACTTTTCTTGCCAATGAATGTTTTTTT
66 GTAATAAGGCTTACAAAGGCATCGGCAACTATAAATGGACTTATCTTGCCAATGAATGTTTTTTT
* * *
24203 CTTCATGTTTCCTAAGGCAGACAATCAATTCTAATATCTTTTAAGAAAAAATATAAAAAAATTTA
131 CTTCATGTTTCCTAAGGCAGACAATCAATTATAATATATTTTAAGAAAAAATATAAAAAAATTCA
* * * *
24268 ACTTAAAATAAATTATGAGGTTATAAAAGTATTTAAAATAGTAATAAGGCTTTGGAAGGCTTGGG
196 ACATAAAATAAATTATGAGATTATAAAAGTATTTAAAATAGTAATAAGGCTTTGAAAGGCATGGG
* ** * *
24333 TGACTATAATTGGACTTTTCTTACCAACGAAAGGGTTTTTCTTCACATTTCCTAAGGCAAACATT
261 TGACTATAAATGGACTTTTCTTACCAACGAAAGCCTTTTTCTTCACATTTCCCAAAGCAAACATT
* * ** * *
24398 CGATTACATTTTAATTAAAAATATAAAAAATTAATCTTAAAATCAATTATGATATTATAAAACTA
326 CAATTACATTCTAACCAAAAATATAAAAAATTAATCTTAAAATCAATTATAAGATTATAAAACTA
** *
24463 TTTAAAACGAGTAATTAGGCTTATGAAGGTGTGGATAACAATAAATGGACTTTTCTAGCTAATGA
391 TTTAAAACGAGTAATTAGGCTTATGAAGGCATGGATAACAATAAATGGACTTTTCTAGCCAATGA
24528 ATGGC
456 ATGGC
* * * * * *
24533 TTTTAACAAAAAAAGTACAAAAAAAAAAACTCAACTCAAAATAAATTTTGAGATTATAAAACTTT
1 -TTTAA-ACAAAAA--AC---TAAAAAAATTCAACTTAAAAT-AATTATGAGATTATAAAAC-AT
* * *
24598 TTAAAGTAAGTAATTAGGCTTACGAAA-GCATGGGCAACTATAAATGGACTTATCTTGCCAATGA
57 TTAAAGCAAGTAATAAGGCTTAC-AAAGGCATCGGCAACTATAAATGGACTTATCTTGCCAATGA
* * * * * *
24662 ATAG-TTTTTTCTTCATGTTTTCTAAGGTATACATTCAATTATAATCTATTTTAATAAAAAA-AG
121 AT-GTTTTTTTCTTCATGTTTCCTAAGGCAGACAATCAATTATAATATATTTTAAGAAAAAATA-
* * * *
24725 TGAAAAACATTCAACATAAAATCAATTGTGTGATTATAAAA-TCATTTAAAGCA-AGTAATAAGG
184 T-AAAAAAATTCAACATAAAATAAATTATGAGATTATAAAAGT-ATTTAAA--ATAGTAATAAGG
* ********** * * * *
24788 CTTTTAAAGGCATNNNNNNNNNNAAATGGACTTTTCTTGCTAATGAATGCCTTTTTCTTCACATT
245 CTTTGAAAGGCATGGGTGACTATAAATGGACTTTTCTTACCAACGAAAGCCTTTTTCTTCACATT
* * * *
24853 TCCCAAAGCAGACATTCAATTATAATCTATTCTAACCAAGAATTTAAAAATATTCAA-CTTTAAA
310 TCCCAAAGCAAACATTCAA-T-T-A-C-ATTCTAACCAAAAATATAAAAA-ATT-AATCTTAAAA
* * * * * *
24917 T-AATTATAAGATTTTAAAATTATTTCAATCGAGTAATTAGGCTTTTGAAGGCATGGGTAACAAT
368 TCAATTATAAGATTATAAAACTATTTAAAACGAGTAATTAGGCTTATGAAGGCATGGATAACAAT
*
24981 AAATGGACTTTT-TTGCCAATGAATGGC
433 AAATGGACTTTTCTAGCCAATGAATGGC
* *********
25008 TTTAAACATAAAAACTAAAACAATTCAACTTAAAATGAATTATGAGATTATAAANNNNNNNNNNG
1 TTTAAACA-AAAAACTAAAAAAATTCAACTTAAAAT-AATTATGAGATTATAAA-ACATTTAAAG
* * * * * * * * **
25073 CGAGTAATAAGGCTTTCAAAGGAAT-GG-ATGACTATAAATAGAGTTTTCTTACCAATTAATGCA
63 CAAGTAATAAGGCTTACAAAGGCATCGGCA--ACTATAAATGGACTTATCTTGCCAATGAATGTT
* ** * * ** *
25136 TTTTTCTTCATG-TTCACCAAGATAGACATTCAATTATAATCTATTTTAATCAAAAATCTAAAAA
126 TTTTTCTTCATGTTTC-CTAAGGCAGACAATCAATTATAATATATTTTAAGAAAAAATATAAAAA
* * * *
25200 AATTCAACCTAAAATCAATTATAAGAATATAAAA
190 AATTCAACATAAAATAAATTATGAGATTATAAAA
25234 CCATTAAAGC
Statistics
Matches: 554, Mismatches: 116, Indels: 53
0.77 0.16 0.07
Matches are distributed among these distances:
461 5 0.01
462 6 0.01
467 19 0.03
468 59 0.11
469 227 0.41
470 43 0.08
471 70 0.13
472 4 0.01
473 3 0.01
474 10 0.02
475 14 0.03
476 82 0.15
477 10 0.02
478 2 0.00
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.34
Consensus pattern (460 bp):
TTTAAACAAAAAACTAAAAAAATTCAACTTAAAATAATTATGAGATTATAAAACATTTAAAGCAA
GTAATAAGGCTTACAAAGGCATCGGCAACTATAAATGGACTTATCTTGCCAATGAATGTTTTTTT
CTTCATGTTTCCTAAGGCAGACAATCAATTATAATATATTTTAAGAAAAAATATAAAAAAATTCA
ACATAAAATAAATTATGAGATTATAAAAGTATTTAAAATAGTAATAAGGCTTTGAAAGGCATGGG
TGACTATAAATGGACTTTTCTTACCAACGAAAGCCTTTTTCTTCACATTTCCCAAAGCAAACATT
CAATTACATTCTAACCAAAAATATAAAAAATTAATCTTAAAATCAATTATAAGATTATAAAACTA
TTTAAAACGAGTAATTAGGCTTATGAAGGCATGGATAACAATAAATGGACTTTTCTAGCCAATGA
ATGGC
Found at i:25724 original size:171 final size:170
Alignment explanation
Indices: 25075--28031 Score: 1549
Period size: 171 Copynumber: 17.4 Consensus size: 170
25065 NNNNNNNGCG
* * * *
25075 AGTAATAAGGCTTTCAAAGGAATG-GATGACTATAAATAGAGTTTTCTTACCAATTAAT-GCATT
1 AGTAATAAGGCTTTCAAAGGCATGAG-TGACTATAAATGGACTTTTCTTACCAATGAATGGC-TT
* * *
25138 TTTCTTCATG-TTCACCAAGATAGACATTCAATTATAATCTATTTTAATCAAAAATCTAAAAAAA
64 TTTCTTCATGTTTC-CCAAGGTAGACATTCAATTATAATCTGTTTTAA-CAAAAATGTAAAAAAA
*
25202 TTCAACCTAAAATCAATTATAAGAATATAAAACCA-TTAAAGCA
127 TTCAACCTAAAATCAATTATAAGATTATAAAACCATTTAAAGCA
* * * ** *
25245 AGTAA-AAGGCTTTCGAAGGCTTGCTTGAGTGACCATAAATGGACTTTT-TCTAGCCAACAAAAG
1 AGTAATAAGGCTTTC-AAAG---GCATGAGTGACTATAAATGGACTTTTCT-TA-CCAATGAATG
** * * * ** *
25308 GCTTTTAATTCATGTTTCCCGATGTAGATATTCAATTATAATCTACTTTAACAAAAAAAGTAAAA
60 GCTTTTTCTTCATGTTTCCCAAGGTAGACATTCAATTATAATCTGTTTTAAC-AAAAATGTAAAA
* ***********
25373 AAATTCAACTTAANNNNNNNNNNGAGATTATAAAACCATTTAAAGCA
124 AAATTCAACCTAAAATCAATTATAAGATTATAAAACCATTTAAAGCA
* * * * * * * *
25420 AGCAATAACGCTTTCGAAGGCTTTAGTGACTATAAATAGACTTTTCTTACCAATGAATGCCCTTT
1 AGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTACCAATGAATGGCTTTT
* **********
25485 TCTTCATGTTTCCCAAGGTAGACATTTAATTATAATCTGTTTTAACTAAAAANNNNNNNNNNTTC
66 TCTTCATGTTTCCCAAGGTAGACATTCAATTATAATCTGTTTTAAC-AAAAATGTAAAAAAATTC
* *
25550 AACCTAAAATTAATTATAAGATTATAAAACCATTT-AAGATA
130 AACCTAAAATCAATTATAAGATTATAAAACCATTTAAAG-CA
* ** *
25591 AGTAATAAAGCTTTCAAAGATAT-AGGTGACTATAAATAGACTTTTCTTACCAATGAATGGCTTT
1 AGTAATAAGGCTTTCAAAGGCATGA-GTGACTATAAATGGACTTTTCTTACCAATGAATGGCTTT
* * * * *
25655 TT-TCTCATATTTCCCAAGGTCGAGATTCGATTATAATATGTTTTAACAAAAAATGTAAAAAAAT
65 TTCT-TCATGTTTCCCAAGGTAGACATTCAATTATAATCTGTTTTAAC-AAAAATGTAAAAAAAT
*********** * * *
25719 TCAACCTAANNNNNNNNNNGAGATTATAAAACTATTTAAAACG
128 TCAACCTAAAATCAATTATAAGATTATAAAACCATTTAAAGCA
* * * *
25762 AGTAATTAGGCTTTCGAAA-GCATGGGTGACTATAAATGGACTTTTCTTGCCATTGAATGGCTTT
1 AGTAATAAGGCTTTC-AAAGGCATGAGTGACTATAAATGGACTTTTCTTACCAATGAATGGCTTT
* * *
25826 TCCTTCATGTTTCCCATGGTAGACATTCAATTATAATCT-TGTTTAACCAAAAATATAAAAAAAT
65 TTCTTCATGTTTCCCAAGGTAGACATTCAATTATAATCTGT-TTTAA-CAAAAATGTAAAAAAAT
* * * *
25890 TCAACCTAAAATCAATTATGAGATTGTAAAAACATTTAAAGCG
128 TCAACCTAAAATCAATTATAAGATTATAAAACCATTTAAAGCA
* * * * * *
25933 AGTAATTAGGCTTCCGAAGGCATGATTGACTATAAATGGACTTTTCTTGA-AAATGATTGGCTTT
1 AGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTT-ACCAATGAATGGCTTT
*** * * * * **
25997 TTCTTCATGTTTCTTTAGGCAGACATTCACTTATAATCTGTTTTCACCAAAAATGTTAAACTATT
65 TTCTTCATGTTTCCCAAGGTAGACATTCAATTATAATCTGTTTT-AACAAAAATGTAAAAAAATT
* * ** *
26062 CAACTTAGAATCAATTATAAGATTATAAAATAATTTAAAGCG
129 CAACCTAAAATCAATTATAAGATTATAAAACCATTTAAAGCA
********** * * * **
26104 AGNNNNNNNNNNTTCGAAGGCATGAGTGACTATACATGGACTTTTCTTATCAAT-AGGGGGCTTT
1 AGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTACCAATGA-ATGGCTTT
* ** * * * * *
26168 TGCTTCACATTTCTCAAGGTAAACATTCAATTACAATATGTTTTAACCAAAATAGTAAAAAAATT
65 TTCTTCATGTTTCCCAAGGTAGACATTCAATTATAATCTGTTTTAACAAAAAT-GTAAAAAAATT
* *
26233 CAACCTAAAATCAATTATGAA-TTTATAAAACCATTTAAAAG-T
129 CAACCTAAAATCAATTAT-AAGATTATAAAACCATTT-AAAGCA
* ** * * *
26275 AGTAATAGGGCTTTCAGTGGCATGAGTAACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTT
1 AGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTACCAATGAATGGCTTTT
** ** * * *
26340 TCTTCATGTTTCCCAAGACAGGTATTCAATTATAATATGTTTTAATCGAAAATGTAAAAAAATTT
66 TCTTCATGTTTCCCAAGGTAGACATTCAATTATAATCTGTTTTAA-CAAAAATGTAAAAAAATTC
* * * *
26405 AACTTAAAATTAATTATGAGATTATAAAACCATTCAAAGCTA
130 AACCTAAAATCAATTATAAGATTATAAAACCATTTAAAGC-A
* ** * *** ** *
26447 A-TAATAATGCTTTTGAAGGCATGAATGACTATAAATGGACTTTTCTTGTTAATGGGTAG-TTTT
1 AGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTACCAATGAATGGCTTTT
** ** * * * ** * * *
26510 TGCTTCCCGTTTCTTAGGGCAGACATTCAATCATAATCCATTTTACCCAAACTAGT-AAAAAATT
66 T-CTTCATGTTTCCCAAGGTAGACATTCAATTATAATCTGTTTTAACAAAAAT-GTAAAAAAATT
* * * * * *
26574 CAACTTATAATCATTTATAA-ATTTATAAAATCATGTAAAGTA
129 CAACCTAAAATCAATTATAAGA-TTATAAAACCATTTAAAGCA
** * * * * ** * *
26616 AGTAAT-AGGACTTTCGTAGGCATAATTGACTGTTAATGGACTTTTCTTGTCAATGGAT-ACATT
1 AGTAATAAGG-CTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTACCAATGAATGGC-TT
* * ** * ** * * * * ** * *
26679 TTACTTAACATTTCTCGTGATAAACATTCAATAATAAACTGTTTTTGCTCAAAATATAAAAAAAT
64 TTTCTTCATGTTTCCCAAGGTAGACATTCAATTATAATCTGTTTTAAC-AAAAATGTAAAAAAAT
* ** * ** *
26744 TCAACTTAAAATCAATTACGAGATTACAAAATCGTTTTATA-CA
128 TCAACCTAAAATCAATTATAAGATTATAAAA-CCATTTAAAGCA
* * * ** **
26787 AGTAATAAGGCTTTCGAA-GCTATAAGTGACTATAAATGGACTTTTCATGTCAATGGTTGGCTTT
1 AGTAATAAGGCTTTCAAAGGC-ATGAGTGACTATAAATGGACTTTTCTTACCAATGAATGGCTTT
* * * **********
26851 TGCTTCATATTTCCTAAGGTAGACATTCAATTATAATCTGTTTTAACCAAAAATGNNNNNNNNNN
65 TTCTTCATGTTTCCCAAGGTAGACATTCAATTATAATCTGTTTTAA-CAAAAATGTAAAAAAATT
* * * * *
26916 CAACTTAAAATCAATTATGACATTATAAAACTATTTAAAGCG
129 CAACCTAAAATCAATTATAAGATTATAAAACCATTTAAAGCA
* * * * * * * * *
26958 TGTAATAAGGCTTTCGAAGGGATGAGCGATTATAAATGGACATTTCGTATCAATGGATGG-TTTT
1 AGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTACCAATGAATGGCTTTT
** *** * * * *
27022 TGCTTCACATTTCTTGAGGTAAACATTTAGTTATAATCTATTTTAACCAAAAATGTAAAAAAAAT
66 T-CTTCATGTTTCCCAAGGTAGACATTCAATTATAATCTGTTTTAA-CAAAAATGT-AAAAAAAT
* * * *
27087 TCAACTTGAAATTAATTA-AGAGATTATAAAACCA--T--A-TA
128 TCAACCTAAAATCAATTATA-AGATTATAAAACCATTTAAAGCA
* * * * * * *
27125 A--AATGA-G---T---A---ATGAATGACTATAAATAGACTTTACGTATCAATGAATGGGTTTC
1 AGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTACCAATGAATGGCTTT-
* * * * * * * * * *
27178 GT-TGCATGTTTCTTGC-A-GCACAGATTCAATTATAATCTATTTTTACTCAAAATGTAAAAACA
65 TTCTTCATGTTTC--CCAAGGTAGACATTCAATTATAATCTGTTTTAAC-AAAAATGTAAAAAAA
* * * * * * * *
27240 TTTAACTTAAAATTAGTTATGAGATTACAAAACCATTTTATGCA
127 TTCAACCTAAAATCAATTATAAGATTATAAAACCATTTAAAGCA
* * * * * ** * *
27284 AGTAACAAGGCTTTCGAAGGCATGATTGACTATAAATGGATTTTTTTTGTCAATGGATGGCTTTC
1 AGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTACCAATGAATGGCTTTT
* * * * * * * * *
27349 GCTTCATGTTTTCCTAGGAAAACAATCAATTATAATCTGATTTAACCAAATATGTAAAATAATTC
66 TCTTCATGTTTCCCAAGGTAGACATTCAATTATAATCTGTTTTAA-CAAAAATGTAAAAAAATTC
* **********
27414 AACTTAAAATCAATTANNNNNNNNNNAAACCATTTAAAGCA
130 AACCTAAAATCAATTATAAGATTATAAAACCATTTAAAGCA
* * * * ** *
27455 AGTAATAATGCTTTCGAAGGCATGAGTAACTATAAATGGATTTTTCTTGTCAAT-AGGTGG-TTT
1 AGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTACCAATGA-ATGGCTTT
* * * ** * *
27518 TTGCTTCATGTTTCTCAAGGCAAACGCTCAATTATAATCTATTTTAACCAAAATAGTAAAAAAAT
65 TT-CTTCATGTTTCCCAAGGTAGACATTCAATTATAATCTGTTTTAACAAAAAT-GTAAAAAAAT
* * * * * *
27583 TCAACTTATAATCAATTATGAA-TTTAAAAAATCATTTAAAAG-G
128 TCAACCTAAAATCAATTAT-AAGATTATAAAACCATTT-AAAGCA
* * * * * *
27626 AGTAATAGGGCTTTGAACGACATAAGTGACTATAAGTGGACTTTTCTTACCAATGAATGGCTTTT
1 AGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTACCAATGAATGGCTTTT
* ** * ********
27691 CCTTCATGTTTCCCAAGGCCGACATTCAATTATAATATGTTTTAATCAAAAATGTAANNNNNNNN
66 TCTTCATGTTTCCCAAGGTAGACATTCAATTATAATCTGTTTTAA-CAAAAATGTAAAAAAATTC
** * * * ***
27756 NNCTTAAAATCAATTATGAGATTATAAAACCATTCAAAATG
130 AACCTAAAATCAATTATAAGATTATAAAACCATTTAAAGCA
* * * * * * *
27797 AGTAATAATGCTTTCGAAGGTATTAGTGACTATAAATGGACTTTTGC-TATCAAT-ATAGGGATT
1 AGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTT-CTTACCAATGA-ATGGCTT
* * * * * * *
27860 TTGCTTTATGTTTCTCAGGGCAGACATTCAATTATAATCTGTTTTATCCAAAATAGTAAAAAAAT
64 TTTCTTCATGTTTCCCAAGGTAGACATTCAATTATAATCTGTTTTAACAAAAAT-GTAAAAAAAT
* * * * *
27925 TCAACTTATAATCATTTATGAA-TTTATAAAATCATTTAAAG-A
128 TCAACCTAAAATCAATTAT-AAGATTATAAAACCATTTAAAGCA
** * * * * * * *
27967 ACGTAAT-AGAGCTTTTGAAGGCATGATTAACTGTATATGAACTTTTCTTATCAATGGATGGCTT
1 A-GTAATAAG-GCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTACCAATGAATGGCTT
28031 T
64 T
28032 CGCTTCACAT
Statistics
Matches: 2099, Mismatches: 587, Indels: 201
0.73 0.20 0.07
Matches are distributed among these distances:
154 36 0.02
155 68 0.03
156 5 0.00
157 1 0.00
158 1 0.00
159 2 0.00
161 4 0.00
162 1 0.00
164 1 0.00
165 5 0.00
168 2 0.00
169 15 0.01
170 189 0.09
171 1535 0.73
172 104 0.05
173 23 0.01
174 80 0.04
175 19 0.01
176 8 0.00
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.34
Consensus pattern (170 bp):
AGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTACCAATGAATGGCTTTT
TCTTCATGTTTCCCAAGGTAGACATTCAATTATAATCTGTTTTAACAAAAATGTAAAAAAATTCA
ACCTAAAATCAATTATAAGATTATAAAACCATTTAAAGCA
Found at i:28421 original size:171 final size:171
Alignment explanation
Indices: 28208--28538 Score: 393
Period size: 171 Copynumber: 1.9 Consensus size: 171
28198 NNNNNNNAAT
* * * * *
28208 TATGAGATTATAAAACTATTTAAACTAAGTAATAATGCTTTTGAAGACATGAGTGACTATAAAT-
1 TATGAGATCAGAAAACCATTTAAACTAAGTAATAAGGCTTTTGAAGACATGAGTGACTACAAATG
* ** * * * * ** *
28272 AGACTTTTCTTT-TCAATGGATGGTTTTTGCTTTATGTTTCTCTGGA-TAGACTTTCAATTGTAA
66 A-AATTTT-TTTGTCAATCCATGGTTTTTGCTTCACG-TT-TCTGGAGCAAACAATCAATTATAA
**
28335 TCTGTTTTGCCAAAAAAA-GTAAAAAAATTCAATTTAAAATCAAC
127 TCTGTTTTAACAAAAAAATGTAAAAAAATTCAATTTAAAATCAAC
* **
28379 TATGAGATCAGAAAACCATTTTATAC-AAGTAATAAGGCTTTTGATTACATGAGTGACTACAAAT
1 TATGAGATCAGAAAACCA-TTTAAACTAAGTAATAAGGCTTTTGAAGACATGAGTGACTACAAAT
28443 GAAATTTTTTTGTCAATCCATGGTTTTTGCTTCACGTTTCTGGAGGCAAACAATCAATTATAATC
65 GAAATTTTTTTGTCAATCCATGGTTTTTGCTTCACGTTTCTGGA-GCAAACAATCAATTATAATC
28508 TGTTTTAACAAAAAAATGTAAAAAAATTCAA
129 TGTTTTAACAAAAAAATGTAAAAAAATTCAA
28539 GTNNNNNNNN
Statistics
Matches: 134, Mismatches: 20, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
169 6 0.04
170 5 0.04
171 102 0.76
172 21 0.16
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.37
Consensus pattern (171 bp):
TATGAGATCAGAAAACCATTTAAACTAAGTAATAAGGCTTTTGAAGACATGAGTGACTACAAATG
AAATTTTTTTGTCAATCCATGGTTTTTGCTTCACGTTTCTGGAGCAAACAATCAATTATAATCTG
TTTTAACAAAAAAATGTAAAAAAATTCAATTTAAAATCAAC
Found at i:29370 original size:171 final size:171
Alignment explanation
Indices: 29076--32859 Score: 2348
Period size: 171 Copynumber: 22.2 Consensus size: 171
29066 GCAAAGCACA
* * * * * * ** *
29076 AAGGCATGAGTGGCTGTGAATGGCCTTTTCTTG-CGAATGGATGGCTTTT-CCTCTATATTTCTT
1 AAGGCATGAGTGACTATAAATAGACTTTTCTTGTC-AATGGATGGCTTTTGCTTC-ACGTTTCTC
* * * * * *
29139 GAGGTAGACATTCAGTTATAATCTATTTTAACTAAAAATGTAAATAAAATT-AAGTTAAAATCAA
64 AAGGCAAACATTCAATTATAATCTATTTTAACCAAAAATGTAAA-AAAATTCAACTTAAAATCAA
* ** * *
29203 TTATGAGACTATAAAACCATTTAAAGCAAGTAATAATGCTTTCA
128 TTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCG
* * *
29247 AAGGCATGAGTGACTATAAATATACTTTTCTTGTCAATGGGTGGCTTTTGCTTCACATTTCTCAA
1 AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCAA
* * * *
29312 TGCAGACATTCAATTATAATCTATTTTAACCAAAATTGTAAAAAAATTTAACTTAAAATCAATTA
66 GGCAAACATTCAATTATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTA
* * *
29377 TGA-ATTTATAAAACTATTTAAAGTGAGTATTAGGGCTTTCG
131 TGAGA-TTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCG
* ** * * * * * * * *
29418 AAGGTATGCTTGACTATAAATGGATTTTTCTTATCAACGAATAGCTTTCGCTTCACGTTTC-CTT
1 AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTC-A
* * * *
29482 AGGCAAACATCCAATTATCATCTATTTTAA-CAACAAT-TGAAAAAAATTCAACTTGAAAT-AAT
65 AGGCAAACATTCAATTATAATCTATTTTAACCAAAAATGT-AAAAAAATTCAACTTAAAATCAA-
* * * * *
29544 TTATAAGTTTATAAAATCATGTAAAGTGAGTAATAAGGCTTTCA
128 TTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCG
* ** * *** * *
29588 AAGGGATGAACGACTATAAA-AGACTTTT-TGTGTCAATAGATGGCTTTCATTTCATGTTTCTTA
1 AAGGCATGAGTGACTATAAATAGACTTTTCT-TGTCAATGGATGGCTTTTGCTTCACGTTTCTCA
* * * * *
29651 AGACAAACATTCAATTATAATCTATTTTAACTAAAAATATAAAAAAATTCCACTTAAAATTAATT
65 AGGCAAACATTCAATTATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATT
* *
29716 ATGA-ATTTATAAAACCACTTAAAGTGAGT-ATTAGAGCTTTCG
130 ATGAGA-TTATAAAACCATTTAAAGTGAGTAATAAG-GCTTTCG
* * *** *
29758 AAGGCATGATTGACTATAAAATGGACTTTTCTTGTCAACAAATGGCTTTTGCTTCATGTTTC-CT
1 AAGGCATGAGTGACTAT-AAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTC-
* * * ** * * * *
29822 GAGGCAAACATCCAATTATCATCTATTTTAATGACAACTG-GAAAAAATTCAACGTAAAAT-AAT
64 AAGGCAAACATTCAATTATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAA-
* * * * * * *
29885 TTATAAGGTTATAAAATCGTGTAAGGTAAGTAATAAGGCTTTCG
128 TTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCG
* * * * * ** * *
29929 AAGCCATGAATGACTATAAATGGATTTTTCATGTCAATGGATGGCTTTCACTTTATGTTTC-CTA
1 AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTC-A
* * * * * **********
29993 CGACAAACATTGAATTAT-A---A-TTTGACCAAAAATGTAAAAAAATTTAACTNNNNNNNNNNT
65 AGGCAAACATTCAATTATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATT
* *
30053 ATGAGATTACAAAACCA--T----T---T-A-AA-GC-TT-A
130 ATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCG
* * ** * * **
30081 AAGGCATGAGTGACTATAAATAGACTTTTCTTGTAAATAGATAACTTTTTCTTCACATTTCTTGA
1 AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCAA
* * * * * * ** * *
30146 GGTAGACATTTAGTTATAATGTGTTTTAACTTAAAATTTAAATAAAATTCAATTTAAAATCAATT
66 GGCAAACATTCAATTATAATCTATTTTAACCAAAAATGTAAA-AAAATTCAACTTAAAATCAATT
* * *
30211 ATGAGATTATAAATCTATTTAAAGTGAGTAATAGGGCTTTCG
130 ATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCG
* ** *** * * * * * *
30253 AAAGCATGTTTGACTGCGAATGGACTTCTCTTATCAATGGATGGATTTTGTTTTACGTTTCTCAA
1 AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCAA
* **********
30318 GGAAAACA-TCTAATTATNNNNNNNNNNAA-CAAAAAT-TGAAAAACAATTCAACTTAAAAT-AA
66 GGCAAACATTC-AATTATAATCTATTTTAACCAAAAATGT-AAAAA-AATTCAACTTAAAATCAA
* * * * * *
30379 TTTCTAAGATTATAAAACCCTTTAAAGTGACTAATAAGTCTTTCA
128 -TTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCG
* * * * * * * *
30424 AAGGCATGAGTGACTAGAAATGGACCTTTCGTATCAATGGATAGCTTTCGCTTCACGTTTC-CTG
1 AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTC-A
* * * * ***********
30488 AGACAAACATTCAATTGTAATCTATTTTAACTAAAAATATAAAAATNNNNNNNNNNAAATCAATT
65 AGGCAAACATTCAATTATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATT
** * *
30553 ATGAGATTATAAAACCATTTTCAGTGAATAATAATGCTTTCG
130 ATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCG
* * * *
30595 AAGGTATGGGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTTACATTTCTCAA
1 AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCAA
* * * * * **
30660 GACAGACAATCAATTATAATATATTTTAACCAAAAATGTAAAAGAATTCAACTTAAAATCAATNN
66 GGCAAACATTCAATTATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTA
***************** * *
30725 NNNNNNNNNNNNNNNNNTTAAAGCGAGTAATAAGGCTTTCA
131 TGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCG
* * ** *
30766 AAGGCATGAGTGACTATAAATGGACTTTTCATGTCAATGGATGGCTTTCACTTCAGGTTTC-CTA
1 AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTC-A
* ** * * * * * *
30830 TGATAAACATTCAAATATAA--TATGTTTATGCCTAAAATATGAAAAAATTCAACTTAAAATCAG
65 AGGCAAACATTCAATTATAATCTAT-TTTA-ACCAAAAATGTAAAAAAATTCAACTTAAAATCAA
* **********
30893 TTATGAGATTACAAAACCATNNNNNNNNNNTAATAAGGCTTTCG
128 TTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCG
* * * * * * *** * *
30937 AAGGCATGAGTAACTTTAAATGGACTTTTGTTGTCAATGGGTGGCTTTTGCTTTATACTTCTTAG
1 AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCAA
* * * * * *
31002 GGCAGACATTCAATTATAATCTGTTTT-ACCCAAAATAGTAAAAAAATTCAACTTATAATTAACT
66 GGCAAACATTCAATTATAATCTATTTTAACCAAAAAT-GTAAAAAAATTCAACTTAAAATCAATT
*
31066 ATGA-ATTTATAAAACCATTTAAAGTGAGTAATAGGGCTTTCG
130 ATGAGA-TTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCG
* * * * * * * *
31108 AAGGTATGATTGACTATAAATAGACTTTT-TGTATCAGTGGATGGCTTTCGTTTCATGTTTTTCA
1 AAGGCATGAGTGACTATAAATAGACTTTTCT-TGTCAATGGATGGCTTTTGCTTCACGTTTCTCA
* * * * * * *
31172 AGGCAGACATTCAATTATAATCTAGTTTAACCTAAAATGTAAAAATAATTTAGCTTACAATCAAG
65 AGGCAAACATTCAATTATAATCTATTTTAACCAAAAATGTAAAAA-AATTCAACTTAAAATCAAT
* ** * *
31237 TATAAGATTATAAAACCATTTAAACAGAGTAATAAGACTTTCA
129 TATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCG
* * * * * * * * *
31280 AAGGCATAAGAGACTATAAAT-GAACTTTTCATGTCAATGCATAGCTTTTGCTTTACGATTCCCT
1 AAGGCATGAGTGACTATAAATAG-ACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCA
* * * * * *
31344 AGGCAAACAATCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTTAGCTTAAAATTAATT
65 AGGCAAACATTCAATTATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATT
* * *
31409 ATGACATTAAAAAACCATTTAAAG-CATGTAATAAGGCTTTCG
130 ATGAGATTATAAAACCATTTAAAGTGA-GTAATAAGGCTTTCG
* * *
31451 AAGGAATGAGTGACTATAAATAGACTTTTCTT-TCTAATAGATGGCTTTTTCTTCACGTTTCTCA
1 AAGGCATGAGTGACTATAAATAGACTTTTCTTGTC-AATGGATGGCTTTTGCTTCACGTTTCTCA
* * * * * * * *
31515 AGGTAGACATTCAATTACAATCTGTTTTAGCAAAAAATGTAAACAAATTCTACTTAAAATCAATT
65 AGGCAAACATTCAATTATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATT
********** * **
31580 ANNNNNNNNNNAAACCATTTAAAGCGAGTAATAACACTTTCG
130 ATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCG
* * * * * * *
31622 AAAGTATAAGTGACAATAAATGGACTTTTCTT-TACAATGGATGGCTTTTACTTCATGTTT-TCC
1 AAGGCATGAGTGACTATAAATAGACTTTTCTTGT-CAATGGATGGCTTTTGCTTCACGTTTCT-C
* * * * * * * *
31685 TA-GTAGAGATTCAATTATAATCTGTTTTAACTAAGAATGTAAAAAAATTCACCTTAAAATCAAT
64 AAGGCAAACATTCAATTATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAAT
* * ** *
31749 TATGAGATTACAAAACAATTTAAAGCAAGTAATAATGCTTTCG
129 TATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCG
* * * * * * **
31792 AAGGAATAAGTGACTATAAATAGACTTTTCATGTTAATGGGTGGCTTTTGCTTCACATTTCTTTA
1 AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCAA
* *
31857 GACAAGCATTCAATTATAATCTATTTTAACCATAATAA--TAAAAAAATTCAACTTAAAATCAAT
66 GGCAAACATTCAATTATAATCTATTTTAACCA-AA-AATGTAAAAAAATTCAACTTAAAATCAAT
* * * * *
31920 TATGA-ATTTATAAAACCATTCAAAATGAGTGATAGGGCTTTTG
129 TATGAGA-TTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCG
* * * * * * * *
31963 AAGGTATAATTGACTGTCAATAGACTTTT-TTGGTCAATGGATAGCTTTTGCTTAACATTTCTCA
1 AAGGCATGAGTGACTATAAATAGACTTTTCTT-GTCAATGGATGGCTTTTGCTTCACGTTTCTCA
* * * * ***
32027 TA-GTAAACATTCAGCTTAAAATCTGTTTTAGGTAAAAATGTAAAAAAAAATT-AACTTAAAATC
65 -AGGCAAACATTCA-ATTATAATCTATTTTAACCAAAAATGT--AAAAAAATTCAACTTAAAATC
* * * *
32090 AATTACGAGATTACAAAATCATTTTATACA-T--GTAATAAGGCTTTTG
126 AATTATGAGATTATAAAACCA-TTTA-A-AGTGAGTAATAAGGCTTTCG
* * * * * * ** * *
32136 AAGTCATGAGTGATTAGAAATGGGCTTTTTTTACCAATGGATAGCTTTTCCTTCACGTTTC-CTA
1 AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTC-A
* * * *
32200 AGGCAAACATACAATTATAATCTATTTTAACCAAAAATAT-AAAAAATTTAATTTAAAATCAATT
65 AGGCAAACATTCAATTATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATT
* * * * * ** * *
32264 ACGAGATTATAAAACTATCTAAAGTAAGAAATAATTCTATCA
130 ATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCG
* * *
32306 AAGGCATGAGT-ATCTATAAATGGACTTTTCTTGTCAATAGG-TGGCTTTTGCTTCACTTTTCTT
1 AAGGCATGAGTGA-CTATAAATAGACTTTTCTTGTCAAT-GGATGGCTTTTGCTTCACGTTTCTC
* * ********** *
32369 GAGGCAGACATTCAATTATAATCT-NNNNNNNNNNAAATAGTAAAAACATTCAACTTAAAATCAA
64 AAGGCAAACATTCAATTATAATCTATTTTAACCAAAAAT-GTAAAAAAATTCAACTTAAAATCAA
*
32433 TTATGA-ATTTATAAAACCATTTAAAGTGAGTGAA-AAGGCTTCCG
128 TTATGAGA-TTATAAAACCATTTAAAGTGAGT-AATAAGGCTTTCG
* * * * * * * *
32477 AAGGCATGATTGACTATAAATGGACTTTTCTTGCCAATGGATAGCTTTTTCTTTAAGTTTCTTAA
1 AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCAA
* * * * * ** *
32542 GGTAAACATTCAATTATAATTTTTTTTAACTAAAAATGTAAAAGAATTTTACTTAAAATGAATTA
66 GGCAAACATTCAATTATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTA
***
32607 TGA-ATTTATAAAACCATTTAAACCAAGTAATAAGGCTTTCG
131 TGAGA-TTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCG
* ********** * * *
32648 AAAGCANNNNNNNNNNTAAATGGACTTTTCTTGTCAATGGATGGCTTTTTCTTCAC-ATT-TCAT
1 AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCA-
* * * * * * ** *
32711 AGGTAGATAATCAATTATAATATGTTTTAATGAAGAATGTAAAAAAAATT-AACTTAAAATCAAT
65 AGGCAAACATTCAATTATAATCTATTTTAACCAAAAATGT-AAAAAAATTCAACTTAAAATCAAT
* * * **
32775 TATAAGATTACAAAACCATTTAAAGCGAGTAATAATACTTTCG
129 TATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCG
* * * * *
32818 ACGGAATGAGTGACTATAAATAGGCTTTTTTTGTCATTGGAT
1 AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGAT
32860 TTTTGGGGAT
Statistics
Matches: 2725, Mismatches: 775, Indels: 227
0.73 0.21 0.06
Matches are distributed among these distances:
152 59 0.02
153 3 0.00
154 2 0.00
155 2 0.00
156 1 0.00
157 15 0.01
158 24 0.01
160 2 0.00
164 2 0.00
165 9 0.00
166 25 0.01
167 2 0.00
168 4 0.00
169 85 0.03
170 583 0.21
171 1452 0.53
172 337 0.12
173 100 0.04
174 15 0.01
175 2 0.00
176 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.34
Consensus pattern (171 bp):
AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCTCAA
GGCAAACATTCAATTATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTA
TGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCG
Found at i:32356 original size:514 final size:512
Alignment explanation
Indices: 30927--32645 Score: 1271
Period size: 514 Copynumber: 3.3 Consensus size: 512
30917 NNNNNNTAAT
* * * * * * * * * *
30927 AAGGCTTTCGAAGGCATGAGTAACTTTAAATGGACTTTTGTTGTCAATGGGTGGCTTTTGCTTTA
1 AAGGCTTCCGAAGGCATAATTGACTATAAATAGACTTTTCTTGCCAATGGATAGCTTTTGCTTTA
* * * * * * * **
30992 TACTTCTTAGGGCAGACATTCAATTATAATCTGTTTT-ACCCAAAATAGT-AAAAAAATTCAACT
66 AATTTCTCAAGGTAAACATTCAATTAAAATCTGTTTTAACTAAAAAT-GTAAAAAAAATT-AACT
* * * * * *** * * *
31055 TATAATTAACTATGAATTTATAAAACCATTTAAAGTGAGTAATAGGGCTTTCGAAGGT-ATGATT
129 TAAAATCAATTACGAATTTACAAAACCATTTAAACCAAGTAATAAGGCTTTTGAA-GTCATGAGT
* * * * * * *** * * * * *
31119 GACTATAAATAGACTTTT-TGTATCAGTGGATGGCTTTCGTTTCATGTTTTTCAAGGCAGACATT
193 GATTAGAAATGGACTTTTCTTTA-CAATGGATAGCTTTTACTTCACGTTTTCCTA-GCAAACATA
* * * * * * * ** *
31183 CAATTATAATCTAGTTTAACCTAAAATGTAAAAATAATTTAGCTTACAATCAAGTATAAGATTAT
256 CAATTATAATCTATTTTAACCAAAAATATAAAAA-AATTCAACTTAAAATCAATTACGAGATTAC
* * * * * *
31248 AAAACCATTTAAA-CAGAGTAATAA-GACTTTCAAAGGCATAAGAGACTATAAAT-GAACTTTTC
320 AAAACAATCTAAAGCA-AGAAATAATG-CTATCAAAGGAATAAGTGACTATAAATAG-ACTTTTC
* * * * * * * * *
31310 ATGTCAAT-GCATAGCTTTTGCTTTACGATTCCCT-AGGCAAACAATCAATTATAATCT-GTTTT
382 ATGTCAATAG-GTGGCTTTTGCTTCAC-ATTTCTTGAGACAGACATTCAATTATAATCTAATTTT
* * * * * *
31372 AA-CAAAAAATGTAAAAAAATTTAGCTTAAAATTAATTATGACA-TTAAAAAACCATT-TAAA-G
445 AACCAAATAA--TAAAAAAATTCAACTTAAAATCAATTATGA-ATTTATAAAACCATTCAAAATG
31433 CA-TGTAA
507 -AGTG-AA
* * * * * * * * * *
31440 TAAGGCTTTCGAAGGAATGAGTGACTATAAATAGACTTTTCTTTCTAATAGATGGCTTTTTCTTC
1 -AAGGCTTCCGAAGGCATAATTGACTATAAATAGACTTTTCTTGCCAATGGATAGCTTTTGCTTT
** * * * * * *
31505 ACGTTTCTCAAGGTAGACATTCAATTACAATCTGTTTTAGCAAAAAATGT-AAACAAATTCTACT
65 AAATTTCTCAAGGTAAACATTCAATTAAAATCTGTTTTAACTAAAAATGTAAAAAAAATT-AACT
********** * * ** * *
31569 TAAAATCAATTANNNNNNNNNNAAACCATTTAAAGCGAGTAATAACACTTTCGAAAGT-ATAAGT
129 TAAAATCAATTACGAATTTACAAAACCATTTAAACCAAGTAATAAGGCTTTTG-AAGTCATGAGT
** * * * * * * *
31633 GACAATAAATGGACTTTTCTTTACAATGGATGGCTTTTACTTCATGTTTTCCTAGTAGAGATTCA
193 GATTAGAAATGGACTTTTCTTTACAATGGATAGCTTTTACTTCACGTTTTCCTAGCAAACATACA
* * * * * *
31698 ATTATAATCTGTTTTAACTAAGAATGTAAAAAAATTCACCTTAAAATCAATTATGAGATTACAAA
258 ATTATAATCTATTTTAACCAAAAATATAAAAAAATTCAACTTAAAATCAATTACGAGATTACAAA
* * * * *
31763 ACAATTTAAAGCAAGTAATAATGCTTTCGAAGGAATAAGTGACTATAAATAGACTTTTCATGTTA
323 ACAATCTAAAGCAAGAAATAATGCTATCAAAGGAATAAGTGACTATAAATAGACTTTTCATGTCA
* *
31828 ATGGGTGGCTTTTGCTTCACATTTCTTTAGACA-AGCATTCAATTATAATCT-ATTTTAACCATA
388 ATAGGTGGCTTTTGCTTCACATTTCTTGAGACAGA-CATTCAATTATAATCTAATTTTAACCA-A
*
31891 ATAATAAAAAAATTCAACTTAAAATCAATTATGAATTTATAAAACCATTCAAAATGAGTGAT
451 ATAATAAAAAAATTCAACTTAAAATCAATTATGAATTTATAAAACCATTCAAAATGAGTGAA
* ** * * * *
31953 AGGGCTTTTGAAGGTATAATTGACTGTCAATAGACTTTT-TTGGTCAATGGATAGCTTTTGC-TT
1 AAGGCTTCCGAAGGCATAATTGACTATAAATAGACTTTTCTT-GCCAATGGATAGCTTTTGCTTT
* **
32016 AACATTTCTCATA-GTAAACATTCAGCTTAAAATCTGTTTTAGGTAAAAATGTAAAAAAAAATTA
65 AA-ATTTCTCA-AGGTAAACATTCA-ATTAAAATCTGTTTTAACTAAAAATGT-AAAAAAAATTA
* * *
32080 ACTTAAAATCAATTACGAGA-TTACAAAATCATTTTATA-CATGTAATAAGGCTTTTGAAGTCAT
126 ACTTAAAATCAATTACGA-ATTTACAAAACCA-TTTAAACCAAGTAATAAGGCTTTTGAAGTCAT
* *
32143 GAGTGATTAGAAATGGGCTTTT-TTTACCAATGGATAGCTTTTCCTTCACG-TTTCCTAAGGCAA
189 GAGTGATTAGAAATGGACTTTTCTTTA-CAATGGATAGCTTTTACTTCACGTTTTCCT-A-GCAA
* *
32206 ACATACAATTATAATCTATTTTAACCAAAAATAT-AAAAAATTTAATTTAAAATCAATTACGAGA
251 ACATACAATTATAATCTATTTTAACCAAAAATATAAAAAAATTCAACTTAAAATCAATTACGAGA
* * * * * * *
32270 TTATAAAACTATCTAAAGTAAGAAATAATTCTATCAAAGGCATGAGT-ATCTATAAATGGACTTT
316 TTACAAAACAATCTAAAGCAAGAAATAATGCTATCAAAGGAATAAGTGA-CTATAAATAGACTTT
* * * ******
32334 TCTTGTCAATAGGTGGCTTTTGCTTCACTTTTCTTGAGGCAGACATTCAATTATAATCTNNNNNN
380 TCATGTCAATAGGTGGCTTTTGCTTCACATTTCTTGAGACAGACATTCAATTATAATCTAATTTT
**** * * * *
32399 NNNNAAATAGTAAAAACATTCAACTTAAAATCAATTATGAATTTATAAAACCATTTAAAGTGAGT
445 AACCAAATAATAAAAAAATTCAACTTAAAATCAATTATGAATTTATAAAACCATTCAAAATGAGT
32464 GAA
510 GAA
* * *
32467 AAGGCTTCCGAAGGCATGATTGACTATAAATGGACTTTTCTTGCCAATGGATAGCTTTTTCTTTA
1 AAGGCTTCCGAAGGCATAATTGACTATAAATAGACTTTTCTTGCCAATGGATAGCTTTTGCTTTA
* * * * * * * *
32532 AGTTTCTTAAGGTAAACATTCAATTATAATTTTTTTTAACTAAAAATGTAAAAGAATTTTACTTA
66 AATTTCTCAAGGTAAACATTCAATTAAAATCTGTTTTAACTAAAAATGTAAAAAAAATTAACTTA
* * *
32597 AAATGAATTATGAATTTATAAAACCATTTAAACCAAGTAATAAGGCTTT
131 AAATCAATTACGAATTTACAAAACCATTTAAACCAAGTAATAAGGCTTT
32646 CGAAAGCANN
Statistics
Matches: 968, Mismatches: 202, Indels: 72
0.78 0.16 0.06
Matches are distributed among these distances:
511 17 0.02
512 269 0.28
513 109 0.11
514 511 0.53
515 62 0.06
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (512 bp):
AAGGCTTCCGAAGGCATAATTGACTATAAATAGACTTTTCTTGCCAATGGATAGCTTTTGCTTTA
AATTTCTCAAGGTAAACATTCAATTAAAATCTGTTTTAACTAAAAATGTAAAAAAAATTAACTTA
AAATCAATTACGAATTTACAAAACCATTTAAACCAAGTAATAAGGCTTTTGAAGTCATGAGTGAT
TAGAAATGGACTTTTCTTTACAATGGATAGCTTTTACTTCACGTTTTCCTAGCAAACATACAATT
ATAATCTATTTTAACCAAAAATATAAAAAAATTCAACTTAAAATCAATTACGAGATTACAAAACA
ATCTAAAGCAAGAAATAATGCTATCAAAGGAATAAGTGACTATAAATAGACTTTTCATGTCAATA
GGTGGCTTTTGCTTCACATTTCTTGAGACAGACATTCAATTATAATCTAATTTTAACCAAATAAT
AAAAAAATTCAACTTAAAATCAATTATGAATTTATAAAACCATTCAAAATGAGTGAA
Found at i:32727 original size:855 final size:853
Alignment explanation
Indices: 29146--32847 Score: 2065
Period size: 856 Copynumber: 4.4 Consensus size: 853
29136 CTTGAGGTAG
* * **
29146 ACATTCAGTTATAATCTATTTTAACTAAAAATGTAAATAAAATT-AAGTTAAAATCAATTATGAG
1 ACATTCAATTATAATCTGTTTTAACTAAAAATGTAAA-AAAATTCACCTTAAAATCAATTATGAG
* * * * * * * **
29210 ACTATAAAACCATTTAAAGCAAGTAATAATGCTTTC-AAAGGCATGAGTGACTATAAATATACTT
65 ATTACAAAACAATTTAAACCAAGTAATAAGGCTTTCGAAA-GAATAAGTGACTATAAATGGACTT
* * * * *
29274 TTCTTGTCAATGGGTGGCTTTTGCTTCACATTTCTCAATGCAGACATTCAATTATAATCTATTTT
129 TTCTTGTCAATGGGTGGCTTTTGCTTCACATTTCT-TAGGAAGATA-TCAATTATAATCTGTTTT
* * * * *
29339 AACCAAAATTGTAAAAAAATTTAACTTAAAATCAATTATGAATTTATAAAACTATTTAAAGTGAG
192 AACCAAAATAGTAAAAAAATTCAACTTAAAATCAATTATGAATTTATAAAACCATTCAAAATGAG
* ** * * * *
29404 TATTAGGGCTTTCGAAGGTATGCTTGACTATAAATGGA-TTTTTCTTATCAACGAATAGCTTTCG
257 TAATAGGGCTTTCGAAGGTATAATTGACTATAAATAGACTTTTT-GTATCAATGGATAGCTTTCG
* * * * ** * *
29468 CTTCACGTTTC-CTTAGGCAAACATCCAATTATCATCTATTTTAA-C-AACAAT-T-GAAAAAAA
321 CTTAACATTTCTC-AAGGCAAACATTCAATTAAAATCTAGTTTAACCTAA-AATGTAAAAAAAAA
* * * * * * * ** *
29528 TTCAACTTGAAAT-AATTTATAAGTTTATAAAATCATGTAAAGTGAGTAATAAGGCTTTCAAAGG
384 TT-AACTTAAAATCAA-GTACAAGATTACAAAACCATTTAAACAGAGTAATAAGACTTTCAAAGG
* * * * ** ** * * * * *
29592 GATGAA-CGACTATAAAAG-ACTTTTTGTGTCAATAG-ATGGC-TTTCATTTCATG-TTTCTTAA
447 CAT-AAGAGACTAGAAATGAACTTTTCATACCAAT-GCATAGCTTTTC-CTTCACGATTCCCT-A
* * * ** *
29652 GACAAACATTCAATTATAATCTATTTTAACTAAAAATATAAAAAAATTCCACTTAAAATTAATTA
508 GGCAAACAATCAATTATAATCTATTTTAACAAAAAATATAAAAAAATTTAACTTAAAATCAATTA
* * ** * * * * * *
29717 TGA-ATTTATAAAACCA-CTTAAAGTGAG-TATTAGAGCTTTCGAAGGCATGATTGACTATAAAA
573 CGACA-TTAAAAAACCATC-TAAAGCAAGAAATAAG-GCTATCAAAGGAATGAGTGACTAT-AAA
* * * * * * *
29779 TGGACTTTTCTTGTC-AACAAATGGCTTTTGCTTCATGTTTC-CTGAGGCAAACATCCAATTATC
634 TAGACTTTTCTT-TCTAATAGATGGCTTTTGCTTCACGTTTCTC-AAGGCAGACATTCAATTA-C
* *** * * * * * *
29842 -ATCTATTTTAATGACAACTGGAAA-AAATTCAACGTAAAAT-AATTTAT-AAGGTTATAAAATC
696 AATCTGTTTTAGCAAAAAATGTAAACAAATTCAACTTAAAATCAA-TTATGAA-TTTATAAAACC
* * * ** ** * * * * *
29903 GTGTAAGGTAAGTAATAAGGCTTTCG-AAGCCATGAA-TGACTATAAATGGATTTTTCATGTCAA
759 ATTTAAAGCGAGTAATAACACTTCCGAAAG-CAT-AAGTGACAATAAATGGACTTTTCTTGACAA
* * * * *
29966 TGGATGGCTTTCACTTTATG-TTTCCTACGACAA
822 TGGATAGCTTTTACTTCAAGTTTTCCTA-G-TAA
* * * * * **********
29999 ACATTGAATTATAA-----TTTGACCAAAAATGTAAAAAAATTTAACTNNNNNNNNNNTATGAGA
1 ACATTCAATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTCACCTTAAAATCAATTATGAGA
* * * * *
30059 TTACAAAACCATTTAAAGC---TTA-AAGG----C------ATGAGTGACTATAAATAGACTTTT
66 TTACAAAACAATTTAAACCAAGTAATAAGGCTTTCGAAAGAATAAGTGACTATAAATGGACTTTT
* * * ** * * * * * *
30110 CTTGTAAATAGATAACTTTTTCTTCACATTTCTTGAGGTAGACATTTAGTTATAATGTGTTTTAA
131 CTTGTCAATGGGTGGCTTTTGCTTCACATTTCTT-AGGAAGATA-TCAATTATAATCTGTTTTAA
* * * * * * *
30175 CTTAAAAT-TTAAATAAAATTCAATTTAAAATCAATTATGAGA-TTATAAATCTATTTAAAGTGA
194 C-CAAAATAGTAAA-AAAATTCAACTTAAAATCAATTATGA-ATTTATAAAACCATTCAAAATGA
* * ** *** * * * * *
30238 GTAATAGGGCTTTCGAAAGCATGTTTGACTGCGAATGGACTTCTCT-TATCAATGGATGGATTTT
256 GTAATAGGGCTTTCGAAGGTATAATTGACTATAAATAGACTT-TTTGTATCAATGGATAGCTTTC
* * * * *********** * * *
30302 GTTTTACGTTTCTCAAGGAAAACA-TCTAATTATNNNNNNNNNNAA-CAAAAAT-TGAAAAACAA
320 GCTTAACATTTCTCAAGGCAAACATTC-AATTAAAATCTAGTTTAACCTAAAATGTAAAAAAAAA
* * * * ** * *
30364 TTCAACTTAAAAT-AATTTCTAAGATTATAAAACCCTTTAAAGTGACTAATAAGTCTTTCAAAGG
384 TT-AACTTAAAATCAAGTAC-AAGATTACAAAACCATTTAAACAGAGTAATAAGACTTTCAAAGG
* * * * * * * * *
30428 CATGAGTGACTAGAAATGGACCTTTCGTATCAATGGATAGC-TTTCGCTTCACG-TTTCCTGAGA
447 CATAAGAGACTAGAAATGAACTTTTCATACCAATGCATAGCTTTTC-CTTCACGATTCCCT-AGG
* * * *********** *
30491 CAAACATTCAATTGTAATCTATTTTAACTAAAAATATAAAAATNNNNNNNNNNAAATCAATTATG
510 CAAACAATCAATTATAATCTATTTTAACAAAAAATATAAAAAAATTTAACTTAAAATCAATTACG
* * * ** * * * * * * *
30556 AGATTATAAAACCATTTTCAGTGAA-TAATAATGCTTTCGAAGGTATGGGTGACTATAAATAGAC
575 ACATTAAAAAACCATCTAAAG-CAAGAAATAAGGCTATCAAAGGAATGAGTGACTATAAATAGAC
* * * * * * * *
30620 TTTTCTTGTC-AATGGATGGCTTTTGCTTTACATTTCTCAAGACAGACAATCAATTATAATATAT
639 TTTTCTT-TCTAATAGATGGCTTTTGCTTCACGTTTCTCAAGGCAGACATTCAATTACAATCTGT
* * *******************
30684 TTTAACCAAAAATGTAAA-AGAATTCAACTTAAAATCAATNNNNNNNNNNNNNNNNNNNTTAAAG
703 TTTAGCAAAAAATGTAAACA-AATTCAACTTAAAATCAATTATGAATTTATAAAACCATTTAAAG
** * * * * * *
30748 CGAGTAATAAGGCTTTC-AAAGGCATGAGTGACTATAAATGGACTTTTCATGTCAATGGATGGCT
767 CGAGTAATAACACTTCCGAAA-GCATAAGTGACAATAAATGGACTTTTCTTGACAATGGATAGCT
* *
30812 TTCACTTC-AGGTTTCCTATGATAA
831 TTTACTTCAAGTTTTCCTA-G-TAA
* * ** * *
30836 ACATTCAAATATAATATGTTTATGCCTAAAATATG--AAAAAATTCAACTTAAAATCAGTTATGA
1 ACATTCAATTATAATCTGTTT-TAACTAAAA-ATGTAAAAAAATTCACCTTAAAATCAATTATGA
* ********** * * * * *
30899 GATTACAAAACCATNNNNNNNNNNTAATAAGGCTTTCGAAGGCATGAGTAACTTTAAATGGACTT
64 GATTACAAAACAATTTAAACCAAGTAATAAGGCTTTCGAAAGAATAAGTGACTATAAATGGACTT
* * * * * *
30964 TTGTTGTCAATGGGTGGCTTTTGCTTTATACTTCTTAGGGCAGACATTCAATTATAATCTGTTTT
129 TTCTTGTCAATGGGTGGCTTTTGCTTCACATTTCTTA-GGAAGATA-TCAATTATAATCTGTTTT
* * * * * *
31029 ACCCAAAATAGTAAAAAAATTCAACTTATAATTAACTATGAATTTATAAAACCATTTAAAGTGAG
192 AACCAAAATAGTAAAAAAATTCAACTTAAAATCAATTATGAATTTATAAAACCATTCAAAATGAG
* * * *
31094 TAATAGGGCTTTCGAAGGTATGATTGACTATAAATAGACTTTTTGTATCAGTGGATGGCTTTCGT
257 TAATAGGGCTTTCGAAGGTATAATTGACTATAAATAGACTTTTTGTATCAATGGATAGCTTTCGC
* ** * * * * *
31159 TTCATGTTTTTCAAGGCAGACATTCAATTATAATCTAGTTTAACCTAAAATGTAAAAATAATTTA
322 TTAACATTTCTCAAGGCAAACATTCAATTAAAATCTAGTTTAACCTAAAATGTAAAAAAAAATTA
* * * *
31224 GCTTACAATCAAGTATAAGATTATAAAACCATTTAAACAGAGTAATAAGACTTTCAAAGGCATAA
387 ACTTAAAATCAAGTACAAGATTACAAAACCATTTAAACAGAGTAATAAGACTTTCAAAGGCATAA
* ** * *
31289 GAGACTATAAATGAACTTTTCATGTCAATGCATAGCTTTTGCTTTACGATTCCCTAGGCAAACAA
452 GAGACTAGAAATGAACTTTTCATACCAATGCATAGCTTTTCCTTCACGATTCCCTAGGCAAACAA
* * * * *
31354 TCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTTAGCTTAAAATTAATTATGACATTAA
517 TCAATTATAATCTATTTTAACAAAAAATATAAAAAAATTTAACTTAAAATCAATTACGACATTAA
* * * * *
31419 AAAACCATTTAAAGCATGTAATAAGGCTTTCGAAGGAATGAGTGACTATAAATAGACTTTTCTTT
582 AAAACCATCTAAAGCAAGAAATAAGGCTATCAAAGGAATGAGTGACTATAAATAGACTTTTCTTT
* *
31484 CTAATAGATGGCTTTTTCTTCACGTTTCTCAAGGTAGACATTCAATTACAATCTGTTTTAGCAAA
647 CTAATAGATGGCTTTTGCTTCACGTTTCTCAAGGCAGACATTCAATTACAATCTGTTTTAGCAAA
* **********
31549 AAATGTAAACAAATTCTACTTAAAATCAATTANNNNNNNNNNAAACCATTTAAAGCGAGTAATAA
712 AAATGTAAACAAATTCAACTTAAAATCAATTATGAATTTATAAAACCATTTAAAGCGAGTAATAA
* * * * *
31614 CACTTTCGAAAGTATAAGTGACAATAAATGGACTTTTCTTTACAATGGATGGCTTTTACTTCATG
777 CACTTCCGAAAGCATAAGTGACAATAAATGGACTTTTCTTGACAATGGATAGCTTTTACTTCAAG
*
31679 TTTTCCTAGTAG
842 TTTTCCTAGTAA
* *
31691 AGATTCAATTATAATCTGTTTTAACTAAGAATGTAAAAAAATTCACCTTAAAATCAATTATGAGA
1 ACATTCAATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTCACCTTAAAATCAATTATGAGA
* * * *
31756 TTACAAAACAATTTAAAGCAAGTAATAATGCTTTCGAAGGAATAAGTGACTATAAATAGACTTTT
66 TTACAAAACAATTTAAACCAAGTAATAAGGCTTTCGAAAGAATAAGTGACTATAAATGGACTTTT
* * * *
31821 CATGTTAATGGGTGGCTTTTGCTTCACATTTCTTTAGACAAGCAT-TCAATTATAATCTATTTTA
131 CTTGTCAATGGGTGGCTTTTGCTTCACATTTC-TTAG-GAAG-ATATCAATTATAATCTGTTTTA
* *
31885 ACCATAATAATAAAAAAATTCAACTTAAAATCAATTATGAATTTATAAAACCATTCAAAATGAGT
193 ACCAAAATAGTAAAAAAATTCAACTTAAAATCAATTATGAATTTATAAAACCATTCAAAATGAGT
* * * * * *
31950 GATAGGGCTTTTGAAGGTATAATTGACTGTCAATAGACTTTTT-TGGTCAATGGATAGCTTTTGC
258 AATAGGGCTTTCGAAGGTATAATTGACTATAAATAGACTTTTTGT-ATCAATGGATAGCTTTCGC
* * * **
32014 TTAACATTTCTCATA-GTAAACATTCAGCTTAAAATCT-GTTTTAGGTAAAAATGTAAAAAAAAA
322 TTAACATTTCTCA-AGGCAAACATTCA-ATTAAAATCTAGTTTAACCT-AAAATGTAAAAAAAAA
* * * * * * ** *
32077 TTAACTTAAAATCAATTACGAGATTACAAAATCATTTTATACA-TGTAATAAGGCTTTTGAAGTC
384 TTAACTTAAAATCAAGTACAAGATTACAAAACCA-TTTAAACAGAGTAATAAGACTTTCAAAGGC
* * * ** ** * *
32141 ATGAGTGATTAGAAATGGGCTTTTTTTACCAATGGATAGCTTTTCCTTCACG-TTTCCTAAGGCA
448 ATAAGAGACTAGAAATGAACTTTTCATACCAATGCATAGCTTTTCCTTCACGATTCCCT-AGGCA
* *
32205 AAC-ATACAATTATAATCTATTTTAACCAAAAATAT-AAAAAATTTAATTTAAAATCAATTACGA
512 AACAAT-CAATTATAATCTATTTTAACAAAAAATATAAAAAAATTTAACTTAAAATCAATTACGA
* * * * ** * *
32268 GATTATAAAACTATCTAAAGTAAGAAATAATTCTATCAAAGGCATGAGT-ATCTATAAATGGACT
576 CATTAAAAAACCATCTAAAGCAAGAAATAAGGCTATCAAAGGAATGAGTGA-CTATAAATAGACT
* * ** * **
32332 TTTCTTGTC-AATAGGTGGCTTTTGCTTCACTTTTCTTGAGGCAGACATTCAATTATAATCT-NN
640 TTTCTT-TCTAATAGATGGCTTTTGCTTCACGTTTCTCAAGGCAGACATTCAATTACAATCTGTT
********
32395 NNNNNNNNAAATAGTAAA-AACATTCAACTTAAAATCAATTATGAATTTATAAAACCATTTAAAG
704 TTAGCAAAAAAT-GTAAACAA-ATTCAACTTAAAATCAATTATGAATTTATAAAACCATTTAAAG
* ** * * * * *
32459 TGAGTGAA-AAGGCTTCCGAAGGCATGATTGACTATAAATGGACTTTTCTTGCCAATGGATAGCT
767 CGAGT-AATAACACTTCCGAAAGCATAAGTGACAATAAATGGACTTTTCTTGACAATGGATAGCT
* * *
32523 TTTTCTTTAAG-TTTCTTAAGGTAA
831 TTTACTTCAAGTTTTCCT-A-GTAA
* * * * *
32547 ACATTCAATTATAATTTTTTTTAACTAAAAATGTAAAAGAATTTTA-CTTAAAATGAATTATGA-
1 ACATTCAATTATAATCTGTTTTAACTAAAAATGTAAAA-AAATTCACCTTAAAATCAATTATGAG
* * * **********
32610 ATTTATAAAACCATTTAAACCAAGTAATAAGGCTTTCGAAAGCANNNNNNNNNNTAAATGGACTT
65 A-TTACAAAACAATTTAAACCAAGTAATAAGGCTTTCGAAAGAATAAGTGACTATAAATGGACTT
* * * * *
32675 TTCTTGTCAATGGATGGCTTTTTCTTCACATTTCATAGGTAGATAATCAATTATAATATGTTTTA
129 TTCTTGTCAATGGGTGGCTTTTGCTTCACATTTCTTAGGAAGAT-ATCAATTATAATCTGTTTTA
** * * * **
32740 ATGAAGAAT-GTAAAAAAAATT-AACTTAAAATCAATTAT-AAGATTACAAAACCATTTAAAGCG
193 ACCAA-AATAGT-AAAAAAATTCAACTTAAAATCAATTATGAA-TTTATAAAACCATTCAAAATG
*** * * * * *
32802 AGTAATAATACTTTCGACGGAATGAGTGACTATAAATAGGCTTTTT
255 AGTAATAGGGCTTTCGAAGGTATAATTGACTATAAATAGACTTTTT
32848 TTGTCATTGG
Statistics
Matches: 2222, Mismatches: 537, Indels: 178
0.76 0.18 0.06
Matches are distributed among these distances:
834 80 0.04
835 128 0.06
836 147 0.07
837 228 0.10
838 8 0.00
840 1 0.00
842 33 0.01
843 7 0.00
844 6 0.00
845 4 0.00
846 4 0.00
847 6 0.00
848 43 0.02
850 1 0.00
853 17 0.01
854 26 0.01
855 718 0.32
856 721 0.32
857 44 0.02
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.34
Consensus pattern (853 bp):
ACATTCAATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTCACCTTAAAATCAATTATGAGA
TTACAAAACAATTTAAACCAAGTAATAAGGCTTTCGAAAGAATAAGTGACTATAAATGGACTTTT
CTTGTCAATGGGTGGCTTTTGCTTCACATTTCTTAGGAAGATATCAATTATAATCTGTTTTAACC
AAAATAGTAAAAAAATTCAACTTAAAATCAATTATGAATTTATAAAACCATTCAAAATGAGTAAT
AGGGCTTTCGAAGGTATAATTGACTATAAATAGACTTTTTGTATCAATGGATAGCTTTCGCTTAA
CATTTCTCAAGGCAAACATTCAATTAAAATCTAGTTTAACCTAAAATGTAAAAAAAAATTAACTT
AAAATCAAGTACAAGATTACAAAACCATTTAAACAGAGTAATAAGACTTTCAAAGGCATAAGAGA
CTAGAAATGAACTTTTCATACCAATGCATAGCTTTTCCTTCACGATTCCCTAGGCAAACAATCAA
TTATAATCTATTTTAACAAAAAATATAAAAAAATTTAACTTAAAATCAATTACGACATTAAAAAA
CCATCTAAAGCAAGAAATAAGGCTATCAAAGGAATGAGTGACTATAAATAGACTTTTCTTTCTAA
TAGATGGCTTTTGCTTCACGTTTCTCAAGGCAGACATTCAATTACAATCTGTTTTAGCAAAAAAT
GTAAACAAATTCAACTTAAAATCAATTATGAATTTATAAAACCATTTAAAGCGAGTAATAACACT
TCCGAAAGCATAAGTGACAATAAATGGACTTTTCTTGACAATGGATAGCTTTTACTTCAAGTTTT
CCTAGTAA
Found at i:32834 original size:341 final size:339
Alignment explanation
Indices: 28125--32846 Score: 2022
Period size: 342 Copynumber: 14.0 Consensus size: 339
28115 CAATAGATCG
* * *
28125 TTTTTGCTTCATGTTTCTTAAGGCAAACGTTCAATTATAATCTATTTTAA-TCAAAAATATAAAA
1 TTTTT-CTTCAAGTTTCTTAAGGCAAACATTCAATTATAATCTATTTTAACT-AAAAATGTAAAA
********** * * *
28189 AATTCANNNNNNNNNNAATTATGAGA-TTATAAAACTATTTAAA-CTAAGTAATAATGCTTTTG-
64 AATTCAACTTAAAATCAATTATGA-ATTTATAAAACCATTTAAAGC-AAGTAATAAGGCTTTCGA
* * * * * ** *
28251 AAGACATGAGTGACTATAAATAGACTTTTCTTTTCAATGGATGGTTTTTGCTTTATGTTTC-TCT
127 AAG-CATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTCAT-A
* * **** * * *
28315 GGATAGACTTTCAATTGTAATCTGTTTTGCCAAAAAAAGT-AAAAAAATTCAATTTAAAATCAAC
190 GG-TAGACATTCAATTATAATCTGTTTTAATGAAAAATGTAAAAAAAATT-AACTTAAAATCAAT
* * * * ** *
28379 TATGAGATCAGAAAACCATTTTATA-CAAGTAATAAGGCTTTTG-ATTACATGAGTGACTACAAA
253 TATGAGATTACAAAACCA-TTTAAAGC-AGTAATAAGGCTTTCGAAGGA-ATGAGTGACTATAAA
* * * * ** *
28442 TGAAATTTTTTTGTCAATCCAT-GG
315 TGGACTTTTCTTGCCAATGGATAGC
* ** * * *
28466 TTTTTGCTTCACGTTTCTGGAGGCAAACAATCAATTATAATCTGTTTTAACAAAAAAATGTAAAA
1 TTTTT-CTTCAAGTTTCTTAAGGCAAACATTCAATTATAATCTATTTTAAC-TAAAAATGT-AAA
* ********** * * * * *
28531 AAATTCAAGTNNNNNNNNNNTATGAGA-TTATAAAACTATTAAAAGCGAGTAACAATGCTTTC-A
63 AAATTCAACTTAAAATCAATTATGA-ATTTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGA
* * * *
28594 AAGACATGAGTGACTATAAATGGACCTTTCTTGTCAATGGGTGACTTTTG-----C--TT--TAG
127 AAG-CATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTCATAG
** * *
28650 ACAGACATTCAATTATAATCTGTTTT-A-GCCAAAATAGTAAAAAAAATCAACTTAAAATCAATT
191 GTAGACATTCAATTATAATCTGTTTTAATG-AAAAAT-GTAAAAAAAATTAACTTAAAATCAATT
* * ** ** * *
28713 ATGA-ATTTATAAAACCATTTAAGGCGAGTAATAATACTTTCGAAGGTGTGGGTGACTGTAAATG
254 ATGAGA-TTACAAAACCATTTAAAGC-AGTAATAAGGCTTTCGAAGGAATGAGTGACTATAAATG
* ** * *
28777 GACTATTCAAGTCAATGGATGGC
317 GACTTTTCTTGCCAATGGATAGC
** * * * * *********
28800 TTTCGCTTTATG-TTCCTATGGCAAACATTTC-ATTATAATC-AGTTTTAACNNNNNNNNNNAAA
1 TTTTTCTTCAAGTTTCTTAAGGCAAACA-TTCAATTATAATCTA-TTTTAAC-TAAAAATGTAAA
** ** * * * **
28862 AAATTCAA-TCTAAAATCAAGAATGAGGTTACAAAACCATTTAAAGCGAGCAATAATTCTTTCGA
63 AAATTCAACT-TAAAATCAATTATGAATTTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGA
* * * * * * * * * * *
28926 AGGCATGAGTAACTACAAATGGACTTTTCATGTTAATGGGTGGCTTTTGCTTTACGTTTCCTACA
127 AAGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTCATA-G
** * * * ** *
28991 ACAAATATTTAATTATAA----TTTT-ACCAAAAA--TATAAAAAATTCAACTTAAAATCAATTA
191 GTAGACATTCAATTATAATCTGTTTTAATGAAAAATGTAAAAAAAATT-AACTTAAAATCAATTA
* * * * * * *
29049 TGAGATTACAAAACCA--T---GC----A-AA-GC--ACAAAGGCATGAGTGGCTGTGAATGGCC
255 TGAGATTACAAAACCATTTAAAGCAGTAATAAGGCTTTCGAAGGAATGAGTGACTATAAATGGAC
* *
29101 TTTTCTTGCGAATGGATGGC
320 TTTTCTTGCCAATGGATAGC
* * * * *
29121 -TTTTCCTCTATA-TTTCTTGAGGTAGACATTCAGTTATAATCTATTTTAACTAAAAATGTAAAT
1 TTTTTCTTC-A-AGTTTCTTAAGGCAAACATTCAATTATAATCTATTTTAACTAAAAATGT-AA-
* * *
29184 AAAATT-AAGTTAAAATCAATTATGAGA-CTATAAAACCATTTAAAGCAAGTAATAATGCTTTC-
62 AAAATTCAACTTAAAATCAATTATGA-ATTTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCG
* ** *
29246 AAAGGCATGAGTGACTATAAATATACTTTTCTTGTCAATGGGTGGCTTTTGCTTCACATTTC-TC
126 AAA-GCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTCAT-
* * * ** * *
29310 AATGCAGACATTCAATTATAATCTATTTTAACCAAAATTGTAAAAAAATTTAACTTAAAATCAAT
189 -AGGTAGACATTCAATTATAATCTGTTTTAATGAAAAATGTAAAAAAAATTAACTTAAAATCAAT
* * * * * * **
29375 TATGA-ATTTATAAAACTATTTAAAGTGAGTATTAGGGCTTTCGAAGGTATGCTTGACTATAAAT
253 TATGAGA-TTACAAAACCATTTAAAG-CAGTAATAAGGCTTTCGAAGGAATGAGTGACTATAAAT
* ** * *
29439 GGATTTTTCTTATCAACGAATAGC
316 GGACTTTTCTTGCCAATGGATAGC
** * * * * *
29463 TTTCGCTTCACGTTTCCTT-AGGCAAACATCCAATTATCATCTATTTTAAC-AACAATTGAAAAA
1 TTTTTCTTCAAGTTT-CTTAAGGCAAACATTCAATTATAATCTATTTTAACTAA-AAATGTAAAA
* * * **
29526 AATTCAACTTGAAAT-AATTTAT-AAGTTTATAAAATCATGTAAAGTGAGTAATAAGGCTTTC-A
64 AATTCAACTTAAAATCAA-TTATGAA-TTTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGA
* * * * *** ** *
29588 AAGGGATGAA-CGACTATAAA-AGACTTTT-TGTGTCAATAGATGGCTTTCATTTCATGTTTCTT
127 AA-GCAT-AAGTGACTATAAATGGACTTTTCT-TGTCAATGGATGGCTTTTGCTTCACATTTCAT
** * * * * *
29650 AAGACAAACATTCAATTATAATCTATTTTAACT-AAAAATAT-AAAAAAATTCCACTTAAAATTA
189 -AGGTAGACATTCAATTATAATCTGTTTTAA-TGAAAAATGTAAAAAAAATT-AACTTAAAATCA
* * * * * *
29713 ATTATGA-ATTTATAAAACCACTTAAAGTGAGT-ATTAGAGCTTTCGAAGGCATGATTGACTATA
251 ATTATGAGA-TTACAAAACCATTTAAAG-CAGTAATAAG-GCTTTCGAAGGAATGAGTGACTAT-
* *** *
29776 AAATGGACTTTTCTTGTCAACAAATGGC
312 AAATGGACTTTTCTTGCCAATGGATAGC
* * * * * * * * *
29804 TTTTGCTTCATGTTTCCTGAGGCAAACATCCAATTATCATCTATTTTAA-TGACAACTGGAAAAA
1 TTTTTCTTCAAGTTTCTTAAGGCAAACATTCAATTATAATCTATTTTAACT-AAAAATGTAAAAA
* * * * * * *
29868 ATTCAACGTAAAAT-AATTTAT-AAGGTTATAAAATCGTGTAAGGTAAGTAATAAGGCTTTCG-A
65 ATTCAACTTAAAATCAA-TTATGAA-TTTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAA
* * ** * ** *
29930 AGCCATGAA-TGACTATAAATGGATTTTTCATGTCAATGGATGGCTTTCACTTTATGTTTCCTAC
128 AG-CAT-AAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTCATA-
** * * * ** * **********
29994 GACAAACATTGAATTATAA-----TTTGACCAAAAATGTAAAAAAATTTAACTNNNNNNNNNNTA
190 GGTAGACATTCAATTATAATCTGTTTTAATGAAAAATGTAAAAAAAATTAACTTAAAATCAATTA
* *
30054 TGAGATTACAAAACCATTTAAAGC--T--T-A--------AAGGCATGAGTGACTATAAATAGAC
255 TGAGATTACAAAACCATTTAAAGCAGTAATAAGGCTTTCGAAGGAATGAGTGACTATAAATGGAC
** * *
30106 TTTTCTTGTAAATAGATAAC
320 TTTTCTTGCCAATGGATAGC
* * * * * * * * *
30126 TTTTTCTTCACA-TTTCTTGAGGTAGACATTTAGTTATAATGTGTTTTAACTTAAAATTTAAATA
1 TTTTTCTTCA-AGTTTCTTAAGGCAAACATTCAATTATAATCTATTTTAACTAAAAATGT-AA-A
* * * ** *
30190 AAATTCAATTTAAAATCAATTATGAGA-TTATAAATCTATTTAAAGTGAGTAATAGGGCTTTCGA
63 AAATTCAACTTAAAATCAATTATGA-ATTTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGA
*** *** * * * * * *
30254 AAGCATGTTTGACTGCGAATGGACTTCTCTTATCAATGGATGGATTTTGTTTTACGTTTC-TCAA
127 AAGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTCAT--A
* * ********** * *
30318 GGAAAACA-TCTAATTATNNNNNNNNNNAA-CAAAAAT-TGAAAAACAATTCAACTTAAAAT-AA
190 GGTAGACATTC-AATTATAATCTGTTTTAATGAAAAATGT-AAAAAAAATT-AACTTAAAATCAA
* * * * * * * * * *
30379 TTTCTAAGATTATAAAACCCTTTAAAGTGACTAATAAGTCTTTCAAAGGCATGAGTGACTAGAAA
252 -TTATGAGATTACAAAACCATTTAAAG-CAGTAATAAGGCTTTCGAAGGAATGAGTGACTATAAA
* * **
30444 TGGACCTTTCGTATCAATGGATAGC
315 TGGACTTTTCTTGCCAATGGATAGC
** * * * * * *
30469 TTTCGCTTCACGTTTCCTGAGACAAACATTCAATTGTAATCTATTTTAACTAAAAATAT-AAAAA
1 TTTTTCTTCAAGTTTCTTAAGGCAAACATTCAATTATAATCTATTTTAACTAAAAATGTAAAAAA
******** ** * *
30533 TNNNNNNNNNNAAATCAATTATGAGA-TTATAAAACCATTTTCAGTGAA-TAATAATGCTTTCGA
66 T--TCAACTTAAAATCAATTATGA-ATTTATAAAACCATTTAAAG-CAAGTAATAAGGCTTTCGA
* * ** * *
30596 AGGTATGGGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTTACATTTC-TCAA
127 AAGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTCAT--A
** * * * ** * *
30660 GACAGACAATCAATTATAATATATTTTAACCAAAAATGT-AAAAGAATTCAACTTAAAATCAATN
190 GGTAGACATTCAATTATAATCTGTTTTAATGAAAAATGTAAAAAAAATT-AACTTAAAATCAATT
****************** * *
30724 NNNNNNNNNNNNNNNNNNTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATGG
254 ATGAGATTACAAAACCATTTAAAGC-AGTAATAAGGCTTTCGAAGGAATGAGTGACTATAAATGG
* * *
30789 ACTTTTCATGTCAATGGATGGC
318 ACTTTTCTTGCCAATGGATAGC
** * * * ** * * * **
30811 TTTCACTTCAGGTTTCCTATGATAAACATTCAAATATAATATGTTTATGCCTAAAATATG-AAAA
1 TTTTTCTTCAAGTTTCTTAAGGCAAACATTCAATTATAATCTATTT-TAACTAAAA-ATGTAAAA
* * **********
30875 AATTCAACTTAAAATCAGTTATGAGA-TTACAAAACCATNNNNNNNNNNTAATAAGGCTTTCGAA
64 AATTCAACTTAAAATCAATTATGA-ATTTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAA
* * * * * * * * * *
30939 GGCATGAGTAACTTTAAATGGACTTTTGTTGTCAATGGGTGGCTTTTGCTTTATACTTCTTAGGG
128 AGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTCATA-GG
* *** * * *
31004 CAGACATTCAATTATAATCTGTTTT-ACCCAAAATAGT-AAAAAAATTCAACTTATAATTAACTA
192 TAGACATTCAATTATAATCTGTTTTAATGAAAAAT-GTAAAAAAAATT-AACTTAAAATCAATTA
* * * * * *
31067 TGA-ATTTATAAAACCATTTAAAGTGAGTAATAGGGCTTTCGAAGGTATGATTGACTATAAATAG
255 TGAGA-TTACAAAACCATTTAAAG-CAGTAATAAGGCTTTCGAAGGAATGAGTGACTATAAATGG
** * *
31131 ACTTTT-TGTATCAGTGGATGGC
318 ACTTTTCT-TGCCAATGGATAGC
* * * *
31153 TTTCGT-TTCATGTTT-TTCAAGGCAGACATTCAATTATAATCTAGTTTAACCT-AAAATGTAAA
1 TTT-TTCTTCAAGTTTCTT-AAGGCAAACATTCAATTATAATCTATTTTAA-CTAAAAATGT-AA
* * * * * *
31215 AATAATTTAGCTTACAATCAAGTAT-AAGATTATAAAACCATTTAAA-CAGAGTAATAAGACTTT
62 AA-AATTCAACTTAAAATCAATTATGAA-TTTATAAAACCATTTAAAGCA-AGTAATAAGGCTTT
* * * * * * *
31278 C-AAAGGCATAAGAGACTATAAATGAACTTTTCATGTCAATGCATAGCTTTTGCTTTACGATTCC
124 CGAAA-GCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCAC-ATTTC
* * * * ** * * *
31342 CTAGGCAAACAATCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTTAGCTTAAAATTAA
187 ATAGGTAGACATTCAATTATAATCTGTTTTAATGAAAAATGTAAAAAAAATTAACTTAAAATCAA
* *
31407 TTATGACATTAAAAAACCATTTAAAGCATGTAATAAGGCTTTCGAAGGAATGAGTGACTATAAAT
252 TTATGAGATTACAAAACCATTTAAAGCA-GTAATAAGGCTTTCGAAGGAATGAGTGACTATAAAT
* * * * *
31472 AGACTTTTCTTTCTAATAGATGGC
316 GGACTTTTCTTGCCAATGGATAGC
* * * * * * * *
31496 TTTTTCTTCACGTTTCTCAAGGTAGACATTCAATTACAATCTGTTTTAGCAAAAAATGTAAACAA
1 TTTTTCTTCAAGTTTCTTAAGGCAAACATTCAATTATAATCTATTTTAACTAAAAATGTAAA-AA
* ********** * **
31561 ATTCTACTTAAAATCAATTANNNNNNNNNNAAACCATTTAAAGCGAGTAATAACACTTTCGAAAG
65 ATTCAACTTAAAATCAATTATGAATTTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAAG
* * * ** *
31626 TATAAGTGACAATAAATGGACTTTTCTT-TACAATGGATGGCTTTTACTTCATGTTTTCCTA-GT
130 CATAAGTGACTATAAATGGACTTTTCTTGT-CAATGGATGGCTTTTGCTTCA-CATTTCATAGGT
* * *
31689 AGAGATTCAATTATAATCTGTTTTAACT-AAGAATGT-AAAAAAATTCACCTTAAAATCAATTAT
193 AGACATTCAATTATAATCTGTTTTAA-TGAAAAATGTAAAAAAAATT-AACTTAAAATCAATTAT
* * * *
31752 GAGATTACAAAACAATTTAAAGCAAGTAATAATGCTTTCGAAGGAATAAGTGACTATAAATAGAC
256 GAGATTACAAAACCATTTAAAGC-AGTAATAAGGCTTTCGAAGGAATGAGTGACTATAAATGGAC
* ** * *
31817 TTTTCATGTTAATGGGTGGC
320 TTTTCTTGCCAATGGATAGC
* * * * * *
31837 TTTTGCTTCACA-TTTCTTTAGACAAGCATTCAATTATAATCTATTTTAACCATAATAAT-AAAA
1 TTTTTCTTCA-AGTTTCTTAAGGCAAACATTCAATTATAATCTATTTTAA-C-TAAAAATGTAAA
* *** * * *
31900 AAATTCAACTTAAAATCAATTATGAATTTATAAAACCATTCAAAATGAGTGATAGGGCTTTTGAA
63 AAATTCAACTTAAAATCAATTATGAATTTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAA
* * * * * * * *
31965 GGTATAATTGACTGTCAATAGACTTTT-TTGGTCAATGGATAGCTTTTGCTTAACATTTCTCATA
128 AGCATAAGTGACTATAAATGGACTTTTCTT-GTCAATGGATGGCTTTTGCTTCACA-TT-TCATA
* * * *
32029 -GTAAACATTCAGCTTAAAATCTGTTTT-AGGTAAAAATGTAAAAAAAAATTAACTTAAAATCAA
190 GGTAGACATTCA-ATTATAATCTGTTTTAATG-AAAAATGT-AAAAAAAATTAACTTAAAATCAA
* * * * ** * *
32092 TTACGAGATTACAAAATCATTTTATA-CATGTAATAAGGCTTTTGAAGTCATGAGTGATTAGAAA
252 TTATGAGATTACAAAACCA-TTTAAAGCA-GTAATAAGGCTTTCGAAGGAATGAGTGACTATAAA
* * *
32156 TGGGCTTTTTTTACCAATGGATAGC
315 TGGACTTTTCTTGCCAATGGATAGC
* * * * * *
32181 TTTTCCTTCACGTTTCCTAAGGCAAACATACAATTATAATCTATTTTAACCAAAAATATAAAAAA
1 TTTTTCTTCAAGTTTCTTAAGGCAAACATTCAATTATAATCTATTTTAACTAAAAATGTAAAAAA
* * * * * * * ** *
32246 TTTAATTTAAAATCAATTACGAGA-TTATAAAACTATCTAAAGTAAGAAATAATTCTATC-AAAG
66 TTCAACTTAAAATCAATTATGA-ATTTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAA-
* * *
32309 GCATGAGT-ATCTATAAATGGACTTTTCTTGTCAATAGG-TGGCTTTTGCTTCACTTTTCTTGAG
129 GCATAAGTGA-CTATAAATGGACTTTTCTTGTCAAT-GGATGGCTTTTGCTTCACATTTCAT-AG
* ********** *
32372 GCAGACATTCAATTATAATCT-NNNNNNNNNNAAATAGT-AAAAACATTCAACTTAAAATCAATT
191 GTAGACATTCAATTATAATCTGTTTTAATGAAAAAT-GTAAAAAAAATT-AACTTAAAATCAATT
* * * * *
32435 ATGA-ATTTATAAAACCATTTAAAGTGAGTGAA-AAGGCTTCCGAAGGCATGATTGACTATAAAT
254 ATGAGA-TTACAAAACCATTTAAAG-CAGT-AATAAGGCTTTCGAAGGAATGAGTGACTATAAAT
32498 GGACTTTTCTTGCCAATGGATAGC
316 GGACTTTTCTTGCCAATGGATAGC
* * * *
32522 TTTTTCTTTAAGTTTCTTAAGGTAAACATTCAATTATAATTTTTTTTAACTAAAAATGTAAAAGA
1 TTTTTCTTCAAGTTTCTTAAGGCAAACATTCAATTATAATCTATTTTAACTAAAAATGTAAAA-A
** * *
32587 ATTTTACTTAAAATGAATTATGAATTTATAAAACCATTTAAACCAAGTAATAAGGCTTTCGAAAG
65 ATTCAACTTAAAATCAATTATGAATTTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAAG
********** *
32652 CANNNNNNNNNNTAAATGGACTTTTCTTGTCAATGGATGGCTTTTTCTTCACATTTCATAGGTAG
130 CATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTCATAGGTAG
* * * * *
32717 ATAATCAATTATAATATGTTTTAATGAAGAATGTAAAAAAAATTAACTTAAAATCAATTATAAGA
195 ACATTCAATTATAATCTGTTTTAATGAAAAATGTAAAAAAAATTAACTTAAAATCAATTATGAGA
** *
32782 TTACAAAACCATTTAAAGCGAGTAATAATACTTTCGACGGAATGAGTGACTATAAATAGG-CTTT
260 TTACAAAACCATTTAAAGC-AGTAATAAGGCTTTCGAAGGAATGAGTGACTATAAAT-GGACTTT
32846 T
323 T
32847 TTTGTCATTG
Statistics
Matches: 3329, Mismatches: 840, Indels: 424
0.72 0.18 0.09
Matches are distributed among these distances:
320 4 0.00
321 42 0.01
322 198 0.06
323 31 0.01
324 103 0.03
325 8 0.00
326 5 0.00
327 9 0.00
328 43 0.01
329 35 0.01
330 4 0.00
331 84 0.03
332 41 0.01
333 99 0.03
334 25 0.01
335 31 0.01
336 4 0.00
337 44 0.01
338 11 0.00
339 13 0.00
340 176 0.05
341 755 0.23
342 827 0.25
343 571 0.17
344 152 0.05
345 14 0.00
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.34
Consensus pattern (339 bp):
TTTTTCTTCAAGTTTCTTAAGGCAAACATTCAATTATAATCTATTTTAACTAAAAATGTAAAAAA
TTCAACTTAAAATCAATTATGAATTTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAAGC
ATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTCATAGGTAGA
CATTCAATTATAATCTGTTTTAATGAAAAATGTAAAAAAAATTAACTTAAAATCAATTATGAGAT
TACAAAACCATTTAAAGCAGTAATAAGGCTTTCGAAGGAATGAGTGACTATAAATGGACTTTTCT
TGCCAATGGATAGC
Found at i:34955 original size:170 final size:169
Alignment explanation
Indices: 34459--48457 Score: 5621
Period size: 171 Copynumber: 82.1 Consensus size: 169
34449 TTACAATAAC
* * * * * *
34459 ATGGATGGCTTTTACTTCATGTTTGTCAGGGCAAACATTCAATTATAATCTGTTCTAATGAAAAA
1 ATGGATGGCTTTTGCTTCACGTTTCT-TGGGCAAACATTCAATTATAATCTGTTTTAAT-CAAAA
* * * ** *
34524 TTTAAAAAAAAATT-AACTGAAAATCAATTATAAGATTATAAAACCATTTAAACAGACTAATAAG
64 --TATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAG
* * * * *
34588 GCTTTCGAAGGTATGAGTGACTACAAATGAACTTTTGTTGTCA
127 GCTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * ** * * *
34631 ATGCATAGCTTTTACTTCACATTTCTCAAGGCAAACAATCAATTATAATCTGTTCTAACCAAAAA
1 ATGGATGGCTTTTGCTTCACGTTTCT-TGGGCAAACATTCAATTATAATCTGTTTTAATC-AAAA
* * *
34696 TGTAAAAAAAATTCAACTCAAAATCAATTATTGAGATTACTAAAA-TATTT-AAG-GCAGT-ATA
64 TAT-AAAAAAATTCAACTTAAAATCAATTA-TGAGATTA-TAAAACCATTTAAAGTG-AGTAATA
* * *
34757 AGGCTTTTGAAGGAATAAGTGACTATAAATGGACTTTTCTT-TCA
125 AGGCTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * *
34801 ATAGATTGCTTTTCTTCTTCACGTTTCTTGGGCAAACATTCAATTATAATTTGTTTGAATCAAAA
1 ATGGATGGC-TTT-TGCTTCACGTTTCTTGGGCAAACATTCAATTATAATCTGTTTTAATCAAAA
* * *
34866 TATTAAACAATTCAACTTAAAATCAATTATGAGATAATAAAACCATTTAAAGTGAGTAATAAGGC
64 TATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC
* * *
34931 TTCCGAAAGTATGAGTGACTATAAATGGACTTTTCTTATCA
129 TTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * * *
34972 ATGGATGGCTTTTTCTTTACGTTGCCTAT-GGCAGACATTCAATTATAATCTATTTTAGTCAAAA
1 ATGGATGGCTTTTGCTTCACGTT-TCT-TGGGCAAACATTCAATTATAATCTGTTTTAATC-AAA
* * * * * * *
35036 ATATAAAAGAACTCAACTTAAAATCAATTAT-ATGATTACAAAACTATTTAAACTGA-TAAAAAA
63 ATATAAAAAAATTCAACTTAAAATCAATTATGA-GATTATAAAACCATTTAAAGTGAGTAATAAG
* * * ** *
35099 CCTTTC-AAAGGCATGAGTGAGTACGAATGAACTTTTCTTGTCA
127 GCTTTCGAAA-GAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * ** * * * *
35142 ATGCATGACTTTTGCTTCACATTTCCCGAAGCAAACAAT-AATTATGATTTGTTTTAA-CAAAAA
1 ATGGATGGCTTTTGCTTCACGTTTCTTG-GGCAAACATTCAATTATAATCTGTTTTAATC-AAAA
* *
35205 TTATAAAAAAAATT-AACTT-AAATACAATTATGAGATTATAAAACCATTTAAAAT-AGGTAACA
64 -TAT-AAAAAAATTCAACTTAAAAT-CAATTATGAGATTATAAAACCATTTAAAGTGA-GTAATA
* * * * * * * *
35267 AGACTTTCTAAAGCAGGGGTGACAATAAATGGACCTTTTTTTGACA
125 AGGCTTTCGAAAGAATGAGTGACTATAAATGGA-CTTTTCTTGTCA
* * * * * * * *
35313 ATGGATGGCTTTTGCTTCATGTTTAC-TAGGTAAACAGTCAACTAAAATCTGTTTTAACCACGAA
1 ATGGATGGCTTTTGCTTCACGTTT-CTTGGGCAAACATTCAATTATAATCTGTTTTAATCA-AAA
* ********** * * *
35377 TGTAAAAAAATTCAACTTAAAATCANNNNNNNNNNTGTAAAGCCATTTAAAGTGAGTAATAATGC
64 TATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC
* * *
35442 TTTCAAAAGAATGAGTGACTATAAATAGACTTTTCTTGTTA
129 TTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * *
35483 ATGGATGGCTTTTGCTTCATGTTTCTTAGGGTAGACATTCAATTATAATTTGTTTTGAGAT-AAA
1 ATGGATGGCTTTTGCTTCACGTTTCTT-GGGCAAACATTCAATTATAATCTGTTTT-A-ATCAAA
* ********** *
35547 A-AGAAAAAAA-TCAACTTAAAATCAATTATGA-ATTTATAAAACNNNNNNNNNNGAGTAATAGG
63 ATATAAAAAAATTCAACTTAAAATCAATTATGAGA-TTATAAAACCATTTAAAGTGAGTAATAAG
* * * * * * *** *
35609 GCTTTCGAAGGCATGATTGATTGTGAACAAACTTTTCTTATCA
127 GCTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * * * * * *
35652 ATGGATTGCTTTTAG-TTTATGTTT-TTCAAGGTAAACA-TCTAATTATCATCTATTCTAATGAA
1 ATGGATGGCTTTT-GCTTCACGTTTCTT--GGGCAAACATTC-AATTATAATCTGTTTTAATCAA
* * * * ** *
35714 AGCT-GAAAAAAATTCAACTTAAAAT-AATTTAT-ATGATCATGAAATGATTTAACGTGA-TAAT
62 A-ATATAAAAAAATTCAACTTAAAATCAA-TTATGA-GATTATAAAACCATTTAAAGTGAGTAAT
* * * ****
35775 AACGATTTC-AAAGGCATGAGTGACTAT-AATGGACTTTTCACACCA
124 AAGGCTTTCGAAA-GAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * * * *
35820 ACGGATGGCTTTCGCTTCACTTTTCCTAGGGAAAACATTCAATTATAATCTATGTTT-ACCAAAA
1 ATGGATGGCTTTTGCTTCACGTTT-CTTGGGCAAACATTCAATTATAATCTGT-TTTAATC-AAA
* * * * * * * *
35884 ATTTGAAAAGATTCATCCTAAAATCAATTATAAGAGTAT-AAACTTATTTAAA-TCGAGTAATAA
63 ATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAC-CATTTAAAGT-GAGTAATAA
* * * * * * *
35947 GGCTTTC-AAAGGCATGGGTGACTATAAAT-AATTTTTTTTTTGA
126 GGCTTTCGAAA-GAATGAGTGACTATAAATGGACTTTTCTTGTCA
** * * * * * *
35990 ATCTATGGCTTTTGCTTCATGTTTCTTGAGGCAAAAAATCAATTATAATATGTTTCAACCAAAAT
1 ATGGATGGCTTTTGCTTCACGTTTCTTG-GGCAAACATTCAATTATAATCTGTTTTAATCAAAAT
* * ** * * *
36055 GTAAAAAAATTCAACTTAAAACCAATTATGAGATTATAAAATTATTAAAAGCGAGTAATAATGCT
65 ATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCT
* *
36120 TTCGAAAGCATGAGTGACTATAAACGGACTTTTCTTGTCA
130 TTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * * * * * *
36160 ATGGATGACTTTGGCTTCATGTTTCTTAGGGTATACATTTAATTATAAT-TTTTTTAACCCAACA
1 ATGGATGGCTTTTGCTTCACGTTTCTT-GGGCAAACATTCAATTATAATCTGTTTTAA-TCAAAA
* ********** * *
36224 TAGTAAAAAAATTCAACTCAAAATCANNNNNNNNNNTATAAAACCATTTAAAGTAAGTAATAGGG
64 TA-TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGG
* * * * **
36289 C-TTCCAAAGGCATGATTGACCATAAATAAACTTTTCTTGTCA
128 CTTTCGAAA-GAATGAGTGACTATAAATGGACTTTTCTTGTCA
** ** *** * ** * * *
36331 ATGGATGGCTTTCAC-TCTGTGTTTTCCAAGGTAAACACCCAATTATAATCTATTTCAACCAAAA
1 ATGGATGGCTTTTGCTTC-ACG-TTTCTTGGGCAAACATTCAATTATAATCTGTTTTAATCAAAA
* ************* * *
36395 TGT-AAAAAATTCAACNNNNNNNNNNNNGTGAGATTATAAAACCATTTAAAGCGAGTAATAAGGT
64 TATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC
* * * * * *
36459 TTTC-AAAGGCATGTGTGCCTATGAACGAACTTTTCTTGTCA
129 TTTCGAAA-GAATGAGTGACTATAAATGGACTTTTCTTGTCA
* *** * * * * ** *
36500 ATGCATGGCTTGCACTTTATGTTTCTTGAGGCAAACAATCAATTATAATATGGCTTAACCAAAAN
1 ATGGATGGCTTTTGCTTCACGTTTCTTG-GGCAAACATTCAATTATAATCTGTTTTAATCAAAA-
********* * ** * *
36565 NNNNNNNNNATTCAACTTAAAATCAATTATGAGATTATAAAATCATTTAAAGCAAGTAACAATGC
64 TATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC
* * * * *
36630 TTTCGAAGGTATGAGTGACTTTAAGTGGACTTTTTTTTGTCA
129 TTTCGAAAGAATGAGTGACTATAAATGGAC-TTTTCTTGTCA
* * * * * **
36672 ATAGATGGTTTTTGCTTCATGTTTCTTAGGGAAAACATTCAATTAAAATCTGTTTT-GGCAAAAA
1 ATGGATGGCTTTTGCTTCACGTTTCTT-GGGCAAACATTCAATTATAATCTGTTTTAATC-AAAA
* * * *** **
36736 AAGTAAAAAAATTTAACTTAAAATCATTTATGA-ATTTATAAAACCATTTAAAACAAGTAATTGG
64 TA-TAAAAAAATTCAACTTAAAATCAATTATGAGA-TTATAAAACCATTTAAAGTGAGTAATAAG
* * * * * *
36800 GTTTTCGAAGGCATG-GTTGAGTGTGAATGGACTTTTCTTGTCA
127 GCTTTCGAAAGAATGAG-TGACTATAAATGGACTTTTCTTGTCA
** * * * *
36843 ATGGAT-ATTTTTCGCTTCAC-TTTTTCTGAGGCAAACATCCAATTATCATCTATTTTAA-C---
1 ATGGATGGCTTTT-GCTTCACGTTTCT-TG-GGCAAACATTCAATTATAATCTGTTTTAATCAAA
* ** *
36902 --A-AAAAAAATTCAACTTAAAAT-AATTTATGAGATTATAAAATCATTTAAA-AAAGGTTATAA
63 ATATAAAAAAATTCAACTTAAAATCAA-TTATGAGATTATAAAACCATTTAAAGTGA-GTAATAA
* * * * *
36962 GGCTTTTGAAGGCATGAGTGACTAAAAATGGAGTTTT-TGTGTCA
126 GGCTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCT-TGTCA
* ** * * ** * *
37006 ATAGATCACTTTTGCTTCTCGCTTCCTAAGGCAAACATTCAATTATAATTTGTTTTAA-CAAAAA
1 ATGGATGGCTTTTGCTTCACG-TTTCTTGGGCAAACATTCAATTATAATCTGTTTTAATCAAAAT
* ** ** * *
37070 AGGTCAAAAAATTCAA-TT---AT-AATT-TG-TTTTAATAAAAAAATTCATAA-T--GTATTTA
65 A--TAAAAAAATTCAACTTAAAATCAATTATGAGATT-ATAAAACCATTTA-AAGTGAGTA-ATA
* * * * * * ** * **
37125 A---TAT-GAAA-TATTACT-AAT-TAATATAGTGTTTTACAATCACAAA
125 AGGCTTTCGAAAGAATGAGTGACTATAA-ATGGACTTTT-C-TTGTC--A
* ** ** * ** **
37168 ATCGATTGGCTTGCAAGGCTTACAC-TAACAT-GG-ATGGC-TT---TT-TCTTCATGTTTCTCA
1 ATGGA-TGGCTT---TTGCTT-CACGTTTCTTGGGCA-AACATTCAATTATAATC-TGTTT-T-A
** * * * *** ** * * *
37225 GGGCAAACATTTAATTATAATCTGTTCTTATGAAA--AATTTAAAAAAAATTAACTAAAAATCAA
57 -ATCAAA-ATATAA-AAAAAT-TCAACTTA--AAATCAA-TT--ATGAGATT-A-T-AAAACCAT
* * ** * *
37288 TTATAAGATTA-TAA-AA-CCATTTAAACCAAGTAATAAG-G-CTTTCGAAGGCATGAGTGACTA
110 TTA-AAG-TGAGTAATAAGGC-TTTCGA--AAG-AATGAGTGACTAT--AA---AT--G-GACT-
* * *
37348 CAAATGAACTTTTGT-T
160 ----T---TTCTTGTCA
* * * * ** * ** * *
37364 GTGAAT-GC-ATGGCTT-TTGCTTCACATTTCTCAAAGCAAACAATCAATTATAATCTGTTCTAA
1 ATGGATGGCTTTTGCTTCACG-TT-TC--T--T--GGGCAAACATTCAATTATAATCTGTTTTAA
* * * * * **
37426 CCAAAAATGTAAAAAAATTCAAC-T-CAATCAATTATGAGATTATAAAATCATTTAAGGCCAGTA
58 TC-AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTA
* **********
37489 ATAAGGCTTTCGAAGGAANNNNNNNNNNTAAATGGACTTTTCTTGTCA
122 ATAAGGCTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * *
37537 ATGGATTGCTTTTCCTTCACGTTTCTTGAGGCAGACATTCAATTATAATCTGTTTGAATAAAAAA
1 ATGGATGGCTTTTGCTTCACGTTTCTTG-GGCAAACATTCAATTATAATCTGTTTTAAT-CAAAA
* * * *
37602 TATAACACAATTCAACTTAAAATCAATTAGGAGATAATAAAACCATTTAAAGTGAGTAATAAGGC
64 TATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC
** *
37667 TTTCGAAAGTGTGAGTGACTATAAATGGACTTTTCTTATCA
129 TTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * * * * * *
37708 ACGGATGGCTTTTTCTTTATGTTGCCTAT-GGCGAACATTCAATTATAATCTATTTTAGTAAAAA
1 ATGGATGGCTTTTGCTTCACGTT-TCT-TGGGCAAACATTCAATTATAATCTGTTTTAAT-CAAA
* * * * * *
37772 ATATAAAAGAACTT-AACTTAAAATCTATTAT-ATGATTACAAAACTATTTAAACTGAGTAAAAA
63 ATATAAAA-AAATTCAACTTAAAATCAATTATGA-GATTATAAAACCATTTAAAGTGAGTAATAA
* * * ** *
37835 AGCTTTC-AAAGGCATGAGTGAGTACGAATGAACTTTTCTTGTCA
126 GGCTTTCGAAA-GAATGAGTGACTATAAATGGACTTTTCTTGTCA
** * * * * * * *
37879 ATACATGACTTTTGCTTCACATTTCTCGAAGCAAACAATCAATTATGATTTGTTTTAA-CAAAAA
1 ATGGATGGCTTTTGCTTCACGTTTCTTG-GGCAAACATTCAATTATAATCTGTTTTAATC--AAA
********** * *
37943 ATATAAAAAAATT-AANNNNNNNNNNATTATGAGATTATAAAATCATTTAAAG-CAGATAATAAG
63 ATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAG-TAATAAG
* * * *
38006 ACTTTCGAAAGCAA-GAGTGACAATAAATGGACCTTTTTTTGACA
127 GCTTTCGAAAG-AATGAGTGACTATAAATGGA-CTTTTCTTGTCA
* * * * * * * * *
38050 ATGGATGGCTTTTGC-TCATGTTTAC-TAGGTAAATAGTCAACTAAAATCTGTTTTAACCATGAA
1 ATGGATGGCTTTTGCTTCACGTTT-CTTGGGCAAACATTCAATTATAATCTGTTTTAATCA-AAA
* ** * *
38113 TGT-AAAAAATTCAACTTAAAATCAATTATGAGATTGGAAAGCCATTTAAAGCT-AGTAATAATG
64 TATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAG-TGAGTAATAAGG
* ** *
38176 CTTTCAAAAGAATGAGTGACTATAAACAGACTTTTCTTGTTA
128 CTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * * *
38218 ATGGATGGCTTTTGCTTCACGTTTAGTAGGGTAGACATTTAATTATAATTTGTTTTGAGAT-AAA
1 ATGGATGGCTTTTGCTTCACGTTT-CTTGGGCAAACATTCAATTATAATCTGTTTT-A-ATCAAA
* * * ********** *
38282 A-AGAAAAAAAATAAACTTAAAATCAATTATGA-ATTTATAAAACNNNNNNNNNNGAGTAATAGG
63 ATATAAAAAAATTCAACTTAAAATCAATTATGAGA-TTATAAAACCATTTAAAGTGAGTAATAAG
* * * * * ** *
38345 GCTTTCGAAGGCATGATTGACTGTGAATAAACTTTTCTTATCA
127 GCTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
** * * ** * * * *
38388 ATGGATTACTTTTAG-TTTATGTTTCTCAAGGCAAACA-TCTAATTATCATCTATTCTAATGAAA
1 ATGGATGGCTTTT-GCTTCACGTTTCT-TGGGCAAACATTC-AATTATAATCTGTTTTAATCAAA
* * * **
38451 ACT-GAAAAAAATTCAACTTAAAAT-AATTTAT-ATGATCATGAAATGATTTAAAGTGA-TAATA
63 A-TATAAAAAAATTCAACTTAAAATCAA-TTATGA-GATTATAAAACCATTTAAAGTGAGTAATA
* * * ** *
38512 ACGATTTC-AAAGGCATGAGTGACTAT-AATGGACTTTTCACGCCA
125 AGGCTTTCGAAA-GAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * * *
38556 ACGGATGGCTTTCGCTTCACTTTTCCTAGGGAAAACATTCAATTATAATCTGTGTTTACA-AAAA
1 ATGGATGGCTTTTGCTTCACGTTT-CTTGGGCAAACATTCAATTATAATCTGT-TTTA-ATCAAA
* * * * * * *
38620 ATTTAAAAAGATTCAACCTAAAATCAATTATAAAAGTAT-AAACTTATTTAAA-TCGAGTAATAA
63 ATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAC-CATTTAAAGT-GAGTAATAA
* ** * *
38683 GGCTTTC-AAAGGCATGAGTGACTATAAATAAACTTTTCTTTTGA
126 GGCTTTCGAAA-GAATGAGTGACTATAAATGGACTTTTCTTGTCA
** ** * *
38727 ATCTATGGCTTTTGCTTCACGTTTCTCAAGGCAAACAATCAATTATAATCTGTTTTAACCAAAAT
1 ATGGATGGCTTTTGCTTCACGTTTCT-TGGGCAAACATTCAATTATAATCTGTTTTAATCAAAAT
* * * ** *
38792 ATAAAAAAATTCAACTTAAAACCAATTATGAGATTATAAAATCATTAAAAGCAAGTAATAATGCT
65 ATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCT
* * *
38857 TTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGCCA
130 TTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * * * ** *
38897 ATGGAT-GATTTTGGCTTCATGTTTCTTAGGGTATATATTTAATTATAAT-TGTTTTTACCCAAT
1 ATGGATGGCTTTT-GCTTCACGTTTCTT-GGGCAAACATTCAATTATAATCTG-TTTTAATCAAA
* * * * *
38960 ATAGTAAAAAAATTCAACTCAAAATTAATTTTGA-ATTTATAAAACCATTTAAAGTAAGTAATAC
63 ATA-TAAAAAAATTCAACTTAAAATCAATTATGAGA-TTATAAAACCATTTAAAGTGAGTAATAA
* * * *
39024 GGCTTTC-AAAGGCATGATTGACCATAAATAGACTTTTCTTGTCA
126 GGCTTTCGAAA-GAATGAGTGACTATAAATGGACTTTTCTTGTCA
** *** *** * ** * * *
39068 ATGGATGGCTTTCACTTTGGGTTTCCCAAGGTAAACACCCAATTATAATCTATTTCAACCAAAAT
1 ATGGATGGCTTTTGCTTCACGTTT-CTTGGGCAAACATTCAATTATAATCTGTTTTAATCAAAAT
* ************* * *
39133 GT-AAAAAATTCAACNNNNNNNNNNNNGTGAGATTATAAAACCATTTAAAGCGAGTAATAAGGTT
65 ATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCT
* * * * *
39197 TTC-AAAGGCATGTGTGGCTATGAATGAACTTTTCTTGTCA
130 TTCGAAA-GAATGAGTGACTATAAATGGACTTTTCTTGTCA
* ** * * ********** * ** *
39237 ATGCATGGCTTTCACTTTATGTTTCTTGAGGCAAANNNNNNNNNNTAATATGGCTTAACCAAAAA
1 ATGGATGGCTTTTGCTTCACGTTTCTTG-GGCAAACATTCAATTATAATCTGTTTTAATC-AAAA
* * * *** * **
39302 TGTAAATAAATTCAACTTGAAATCAATTATGAGATTATAAAACCATTTAAAACAAGTAACAATTC
64 TATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC
* * * *
39367 TTTCGAAGGTATGAGTGACTATAAGTGAACTTTTCTTGTCA
129 TTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
** * * *
39408 ATGGATGATTTTTGCTTCATGATTCTTAGGGCAAACATTCAATTATAATCTGTTTTGA-CAAAAA
1 ATGGATGGCTTTTGCTTCACGTTTCTT-GGGCAAACATTCAATTATAATCTGTTTTAATC-AAAA
* * * ** *
39472 AAGTAAAAAAATTCAACTTAAAATCATTTATGA-ATTTATAAAACCATTAAAAGCAAGTAATTAG
64 TA-TAAAAAAATTCAACTTAAAATCAATTATGAGA-TTATAAAACCATTTAAAGTGAGTAATAAG
* * * * * * *
39536 G-TTTGCGAACGCATGATTGAGTGTGAATGGACTTTTCTTATCA
127 GCTTT-CGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* ** * * * *
39579 ATGGATGTCTTTCACTTCACCTTT-TCTGAGGCAAACATCCAATTATCATCTATTTTAA-CAAAA
1 ATGGATGGCTTTTGCTTCACGTTTCT-TG-GGCAAACATTCAATTATAATCTGTTTTAATCAAAA
* *** ** *
39642 -ACAAAAAAACATTCAACTTAAAAT-AATTTATGAGATTATAAAATTGTTTAAAAAGGGTAATAA
64 TA-TAAAAAA-ATTCAACTTAAAATCAA-TTATGAGATTATAAAACCATTTAAAGTGAGTAATAA
* * * * * ** *
39705 AGCTTTTGAAGGCATGAGTGAGTGCAAATGGAGTTTT-TGTGTCA
126 GGCTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCT-TGTCA
* ** * * * *
39749 ATCGATCACTTTTGCTTCTCGTTTCCTAAGGTC-AACATTCAATTATAATCTGTTTTAATAAAAA
1 ATGGATGGCTTTTGCTTCACGTTT-CT-TGGGCAAACATTCAATTATAATCTGTTTTAAT-CAAA
* * **
39813 ATGTCAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGG
63 ATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGG
* * * * * *
39878 --TTCTGAAGGCATAAGTGA-TCTAAATTGACTTTTCTTAT-A
128 CTTTC-GAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
** * *
39917 ATGGATGGCTTTTTTTCTCATGTTTCCTAT-GG-AGACATTCAATTATAATCTAG-TTTAA-CAA
1 ATGGATGGCTTTTGCT-TCACGTTT-CT-TGGGCAAACATTCAATTATAATCT-GTTTTAATCAA
* * * *
39978 CAATGTAAAAGAATTCAACTTAAAATCAATTATAAGATTATAAAACCATTTAAAGCGAGTAATAA
62 -AATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAA
* * * * **
40043 TGCTTTTGAAGGCATGAGTGACTATAAATATACTTTTCTTGTCA
126 GGCTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * *** * *
40087 ATGGATGGTTTTTGCTACATGTTTCTCCAAGCAGACATTCAATTATAATCTG---T--TC--TA-
1 ATGGATGGCTTTTGCTTCACGTTTCT-TGGGCAAACATTCAATTATAATCTGTTTTAATCAAAAT
* * * *
40144 ATAAAAAAATTCAACGTAAAATCTACTT-TGA-ATTTATAAAACCATTTAAAAG-GAGTGATATG
65 ATAAAAAAATTCAACTTAAAATC-AATTATGAGA-TTATAAAACCATTT-AAAGTGAGTAATAAG
** * * * * * *
40206 G-TTTTTAGAGGCATGATTGACTATGAATGGACTTTTTTTGTCG
127 GCTTTCGA-AAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * *
40249 ATGGATGGCTTTTGCTTCAGGTTTCTTGAG-AGAACATCCAATTATCATCTATTTT-ATCAAAA-
1 ATGGATGGCTTTTGCTTCACGTTTCTTGGGCA-AACATTCAATTATAATCTGTTTTAATCAAAAT
* * * *
40311 ATTAAAAAAATAT-AACTTAAAAT-AATTTATAAGAATATAAAACCGTTTAAAGAGAGTAATAAG
65 A-TAAAAAAAT-TCAACTTAAAATCAA-TTATGAGATTATAAAACCATTTAAAGTGAGTAATAAG
* * *
40374 GCTTTCGAATGCATGAGTGATTATAAATGGACTTTTCGTT-TCA
127 GCTTTCGAAAGAATGAGTGACTATAAATGGACTTTTC-TTGTCA
* * * ** *
40417 ATAGATGGCTTTTGCTTCATGTTTCTTATGGCAAACATTCAATTATAATCTACTTTCA-CTAGAA
1 ATGGATGGCTTTTGCTTCACGTTTCTT-GGGCAAACATTCAATTATAATCTGTTTTAATC-A-AA
* * * ** * *
40481 ATTTAAAAAAATTCAAGTCAAAATCAATTATGAGATTATAAAACCATTTAAACCGAGAAATAAGA
63 ATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGG
* * * **
40546 TTTTC-AAATGCATGAGTGACTATGAATAAACTTGTT-TTGTCA
128 CTTTCGAAA-GAATGAGTGACTATAAATGGACTT-TTCTTGTCA
* * * * *** * * *
40588 ATGCATAGTTTTTGCTTCATGTTTCCCAAGGCAAACAATCAACTATAATCTTTTTTAA-CAAAAA
1 ATGGATGGCTTTTGCTTCACGTTT-CTTGGGCAAACATTCAATTATAATCTGTTTTAATC--AAA
* **********
40652 ATATAAAAAAATTCAACTTAAAATGAATTATGANNNNNNNNNNCCATTTAAAGTGAGTAATAAGG
63 ATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGG
* * *****
40717 CTTTCGAAAGCATAAGTGACTATAAATGGACTTTTCTNNNNN
128 CTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
***** * * * * *
40759 NNNNNTAGCTTTTGCTTCACGTTT-TCTAGACATACATTCAATTATAATCTATTTTAA-CTAAGA
1 ATGGATGGCTTTTGCTTCACGTTTCT-TGGGCAAACATTCAATTATAATCTGTTTTAATC-AA-A
* * ********** * *
40822 ATGTAAAAAAAATTCAACTAAAAATCAATNNNNNNNNNNTAAAACCATTTAAAGCGAGTAATAAT
63 ATAT-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAG
* * * * * * * * *
40887 GCTTTGGAAGGCATTAGTGACAAGAAGTAGACCTTTCTTGTCA
127 GCTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * *
40930 ATGGGTGAG-TTTTGCTTTC-TGTTTCTTTGG-ATAGACATTCAATTATAATCTGTTTTAACCAA
1 ATGGATG-GCTTTTGC-TTCACGTTTCTTGGGCA-A-ACATTCAATTATAATCTGTTTTAATCAA
* * *
40992 AATAGTAAAAATATTCAATTTAAAATCAATTATGA-ATTAATAAAACCATTTAAAATGAGTAATA
62 AATA-TAAAAAAATTCAACTTAAAATCAATTATGAGATT-ATAAAACCATTTAAAGTGAGTAATA
* * * * * * * * *
41056 GGGCTTTTGAAGGCATGACTAACTATAAATGTATTTTTTTTTGTCA
125 AGGCTTTCGAAAGAATGAGTGACTATAAATGGA-CTTTTCTTGTCA
*** * * * * * * *
41102 ACAAATGGCATTTGCTTTACGTTTCTTGAGGCAAACATCCAATTATCATCTATTTTAATGAGAAT
1 ATGGATGGCTTTTGCTTCACGTTTCTTG-GGCAAACATTCAATTATAATCTGTTTTAATCAAAAT
* * * * *
41167 -TGAAAAAAAAGTTCAACTTAAAAT-AATTTATAAGATTAGAAAACCATTTAAAATAAGTAGTAA
65 AT--AAAAAAA-TTCAACTTAAAATCAA-TTATGAGATTATAAAACCATTTAAAGTGAGTAATAA
** * * * * * * * *
41230 AACTTTCGAAGGTATGAGTGACTATGAATAGACCTTCCATCTCA
126 GGCTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * ** * *
41274 ATGGATGGCCTTCGCTTCATGTTTCCTAAGGCAAACATTCAATTACAATCTGCTTTAATCAAAAA
1 ATGGATGGCTTTTGCTTCACGTTT-CTTGGGCAAACATTCAATTATAATCTGTTTTAATC-AAAA
* * * * * * *
41339 TGTAAAAACATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTCAAGCGAGAAATAATGC
64 TATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC
** * * *
41404 TTTCGAGGGCATGAATGAATATAAATGGACTTCTT-TTGTCA
129 TTTCGAAAGAATGAGTGACTATAAATGGACTT-TTCTTGTCA
* * *** *** ** * **
41445 ATTGATGGCTTTTGCTTCATGTTTCCCAAGGTGGATGTTCAATTATAATATGTTTT-GCCTAAAA
1 ATGGATGGCTTTTGCTTCACGTTT-CTTGGGCAAACATTCAATTATAATCTGTTTTAATC-AAAA
* * * * * *
41509 TGTAAAAAAATTCAACTTAAAATCAATGATGAGTTTATAAGACCATTTAAAGCGAGTAGTAAGGC
64 TATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC
* *
41574 TTTC-AAAGGCAA-GAGTGACTATAAATGGACTCTTCATGTCA
129 TTTCGAAA-G-AATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * * * *
41615 AAGGATGGCTTTTACTTCACGTTTTTTGAGGAAAACATTCAATTTTAATATGTTCTT-TTCTAAA
1 ATGGATGGCTTTTGCTTCACGTTTCTTG-GGCAAACATTCAATTATAATCTGTT-TTAATC--AA
* * * **
41679 AATATAAAAAAATTCAACTCAAAATCAATTATGAGAATATAAAACCATCTAAACCGAGTAATAAG
62 AATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAG
* * * * * *
41744 GCTTTCGAAGGCATAAGAGACTATATATGAACTTTTCTTGTCA
127 GCTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * *** * * * *
41787 ATGCATTGCTTTTACTTCACGTTTCCTAAAGCAAACAATCAACTATAATCTATTTTAA-CAAAAA
1 ATGGATGGCTTTTGCTTCACGTTT-CTTGGGCAAACATTCAATTATAATCTGTTTTAATCAAAAT
* * * ** * * * *
41851 ATGTAAAACATTGAACTTAAAATCAATTACAAGACTAT-AAACCATTTAAAGCGAGTAACAGGGC
65 AT-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC
* * *
41915 TTTTCGAATA-AATGAGTGACTATAAATAGACTTTTATTGCCA
129 -TTTCGAA-AGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * * * ** * *
41957 ATGAATGGCTTTCT-CTTCATGTTTTTTTAGGCAGACATTTAATTGCAATCTATTTTAACTAAAA
1 ATGGATGGCTTT-TGCTTCACG-TTTCTTGGGCAAACATTCAATTATAATCTGTTTTAA-TCAAA
* * * * **
42021 ATGTAAAACAAATTCAATTTAAAATCAATTACGAGATTATAAAGCCATTTAAAACGAGTAATAAG
63 ATATAAAA-AAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAG
*********** * *
42086 GCTTNNNNNNNNNNAAGTGACTATAAATAGACTTTTCTTATCA
127 GCTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * ** *
42129 ATTGG-TGGGTTTTTCTTCAAGTTTCTCAAGACAAACATTCAATTATAATCTGTTTTAA-CTAAA
1 A-TGGATGGCTTTTGCTTCACGTTTCT-TGGGCAAACATTCAATTATAATCTGTTTTAATC-AAA
* * * **
42192 ATAGTAAAAAAGTTTAACTTAAAATCAATTATGA-ATTTATAAAACCATGTAAAGCAAGTAAT-A
63 ATA-TAAAAAAATTCAACTTAAAATCAATTATGAGA-TTATAAAACCATTTAAAGTGAGTAATAA
* * *
42255 GGACTTTCGAAGGCATGATTGACTATAAATGGACTTTTCTAT-TCA
126 GG-CTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCT-TGTCA
** * *** * * * * ** * *
42300 ACAGATGACATTTT-CTTGGTGTTTCATGAGCAAACATCCAATTATCATCTACTTTAATGAGAAC
1 ATGGATGGC-TTTTGCTTCACGTTTCTTGGGCAAACATTCAATTATAATCTGTTTTAATCA-AAA
* * * * *
42364 TA-AAAACAATTCAGCTTAAAAT-AATTCATAAGATTATAAAA-TAGTTTAAAGTGAGTAACAAG
64 TATAAAAAAATTCAACTTAAAATCAATT-ATGAGATTATAAAACCA-TTTAAAGTGAGTAATAAG
* * * * * **
42426 GCTTCCGAAGGCATGAGTGACTACAAATGGACTTCTGGTGTCA
127 GCTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * ** * *
42469 ACT-GATGGCTTTTACTTCATGTTTCCTAAGGCAAACATTCAATTGTCATCTGTTTTAA-CAAAA
1 A-TGGATGGCTTTTGCTTCACGTTT-CTTGGGCAAACATTCAATTATAATCTGTTTTAATCAAAA
* * ** * * * *
42532 AATATAAAAAATTCTACTTAAAATCAATTACAAGATTATAAAACTATTTCAAGCGAGTAATAATG
64 TATA-AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGG
* ******
42597 CTTTC-AAAGTCATGAGTGACTATAAATGGACTTTTCNNNNNN
128 CTTTCGAAAG-AATGAGTGACTATAAATGGACTTTTCTTGTCA
**** * * * * * * * *
42639 NNNNATGGCTTTTGCTTCATGTTTCTTATGGCAGACATTCAATTATATTATGCTTGAATTAAAAA
1 ATGGATGGCTTTTGCTTCACGTTTCTT-GGGCAAACATTCAATTATAATCTGTTTTAA-TCAAAA
* * ********** * * *
42704 TGTAAAAAATTTTCAACTTAAAATCAATTATGAGNNNNNNNNNNCATTTCAAGCGAATAATAAGG
64 TATAAAAAA-ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGG
* *
42769 CTTTC-AAAGGTATGAGTGACTATAAATGGACTCTTCATT-TCA
128 CTTTCGAAA-GAATGAGTGACTATAAATGGACTTTTC-TTGTCA
** * * * * * ***
42811 ATGGATGGCTTTCACTTTATGTTTCCTAT-AGTAAACATTCAATTATAATATGTTTTTGCCCAAA
1 ATGGATGGCTTTTGCTTCACGTTT-CT-TGGGCAAACATTCAATTATAATCTG-TTTTAATCAAA
* * * * * * * * ** *
42875 ATGTAAAAAAACTCAACTCAAAATTAATTATAAGATTACAAAACCATTTTATGCAAGTAATAAAG
63 ATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGG
* * * *
42940 CTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTGCCA
128 CTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * ** * * * * * * * *
42982 ATTGATAGCTTTTTCGGCATGTTTTTTAAGACAGACATTTAATTATAATATGTTTTAACTAAAAA
1 ATGGATGGCTTTTGCTTCACGTTTCTT-GGGCAAACATTCAATTATAATCTGTTTTAA-TCAAAA
* * ********** * *
43047 TGTAAAAGAATTCAACTTNNNNNNNNNNATGAGATTATAAAACCATTTAAAGCGGGTAATAAGGC
64 TATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC
* * * * *
43112 TTTC-AATGGCATTAGTGACTATAAATAGACTTTTCATGTCA
129 TTTCGAA-AGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * * *
43153 GTGGATGGC-TTT-C--CACATTTCCTAT-GGTAAACAGTCAATTATAATCCG-TTTAAGCCCAA
1 ATGGATGGCTTTTGCTTCACGTTT-CT-TGGGCAAACATTCAATTATAATCTGTTTTAA--TCAA
* * * * * * **
43212 AATGA-AAAAAATTTCAACTTAAAATCAATTATAAAATTACAAAACCATTTTATGCAAGTAATAA
62 AAT-ATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAA
* * * * *
43276 GGTTTTTGAAGGCATGAGTGGCTATAAATGGACTTTTCTTGTCA
126 GGCTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * * * * * * *
43320 ATGGGTCGATTTTGCTTCATGCTTCTTAAGGTAGACATTCAATTATAATCTATTTT-AGCGAAAA
1 ATGGATGGCTTTTGCTTCACGTTTCTT-GGGCAAACATTCAATTATAATCTGTTTTAATC-AAAA
* *
43384 TAGTAAAAAAATTCAACTTATAATCAATTATGA-ATTTATAAAACCATTTAAAGAGAGTAATTAA
64 TA-TAAAAAAATTCAACTTAAAATCAATTATGAGA-TTATAAAACCATTTAAAGTGAGTAA-TAA
* * * *
43448 -GCTTTTG-AAGATATGATTGACTACAAATAGACTTTTCTTGTCA
126 GGCTTTCGAAAGA-ATGAGTGACTATAAATGGACTTTTCTTGTCA
* * *** ** * * * * * *
43491 ATGGATGGCTTTCGCTTCATGTTTCCCAAGTTAAACATCCAATTATCATCTATTTTAATGATAAC
1 ATGGATGGCTTTTGCTTCACGTTT-CTTGGGCAAACATTCAATTATAATCTGTTTTAATCAAAAT
* * * * *
43556 A-AAAAAAATTTAAATTAAAAT-AATTTATAAGGTCATAAAATCC-TTTAAAGTGAGTAATAAGG
65 ATAAAAAAATTCAACTTAAAATCAA-TTATGAGATTATAAAA-CCATTTAAAGTGAGTAATAAGG
* * ** ** *
43618 CTTTTGAAGGGGTGAGCCACTATAAAAGGACTTTTCTTGTCA
128 CTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * ** * * * *
43660 ATGGATAGCTTTTCACTTCATGTTTCTCAAGACAAACATTCAATTCTAATCTTTTTTAATGAAAA
1 ATGGATGGCTTTT-GCTTCACGTTTCT-TGGGCAAACATTCAATTATAATCTGTTTTAAT-CAAA
* * ** *
43725 ATATCAAAAAAAAATTTAACTTAAAATCAA-TATGAGACTATAAAATTATTTAAACTGAGTAATA
63 ATAT---AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATA
* * * * * * **
43789 AGGCTTTC-AAAGGCATAAGAGACTGTAAGTGAACTTTTCTTCCCA
125 AGGCTTTCGAAA-GAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * * **
43834 ATGCATGGTTTTTACTTCACGATTCCTTAGGCAAACAATT-AGGTATAATCTGTTTTAA-CAAAA
1 ATGGATGGCTTTTGCTTCACG-TTTCTTGGGCAAAC-ATTCAATTATAATCTGTTTTAATCAAAA
* * * ** * **********
43897 -ATGTAAAAAATTTAGCTTAAAATCAATTATGAGATTATTCAACCATTTAAAGCGNNNNNNNNNN
64 TAT-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGG
* * * ** *
43961 CTTTTGAAGGAATGAATGACTATAAATGGACTTTTCTTACCC
128 CTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * ** * *
44003 ATGGATGGCTTTTCCTTCATGTTTCTTGAGGTC-GGCATTCAATTATAATCTGATTTAACCAAAA
1 ATGGATGGCTTTTGCTTCACGTTTCTTG-GG-CAAACATTCAATTATAATCTGTTTTAATCAAAA
* * * * ********** **
44067 -ATGCAAAGAAACTCTACTTAAAATCATTTATGAGATTANNNNNNNNNNTAAAGCAAGTAATAAG
64 TAT--AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAG
* * **
44131 GCTTTCGAAAGCATAAGTGACTATAAATGGACTTTTCTTACCA
127 GCTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* *** * * * *
44174 ATTGATGGCTTTTGCTTCACGTTTCTCATGTAGACATTCAATTATAATCTATTTTAACCAAGAAT
1 ATGGATGGCTTTTGCTTCACGTTTCTTGGGCAAACATTCAATTATAATCTGTTTTAATCAA-AAT
* * * * **
44239 ATAAAAAAATTCAACTTAAAAAT-AATTATGACATTACAAAACTATTTAAAGCGAGTAATAATAC
65 ATAAAAAAATTCAACTT-AAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC
* * *
44303 TTTCGAAGGAATGAGTGACTATAAATAGACATTTCTTGTCA
129 TTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * * * * * *
44344 AAGAATGGCTTTTTCTTTATGTTTCTTAGGGTAGACATTCAATTATAATATGTTTTGA-CAAAAG
1 ATGGATGGCTTTTGCTTCACGTTTCTT-GGGCAAACATTCAATTATAATCTGTTTTAATCAAAA-
* ********** *
44408 AAGTAAAAAAATTCAACTTAAAATCAATTATGA-ANNNNNNNNNNTATTTAAAGCGAGTAATAAG
64 TA-TAAAAAAATTCAACTTAAAATCAATTATGAGA-TTATAAAACCATTTAAAGTGAGTAATAAG
* * * * * * * *
44472 GCTTTTGAAGGCATGATTGACTGTGAATGGACCTTGCTTGTCA
127 GCTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * *** * * * *
44515 ATGGATGGCTTTTGGTTTATGTTTCTCAAGCAAAACATCCAATTATCATCTATTTTAATGAAAA-
1 ATGGATGGCTTTTGCTTCACGTTTCTTGGGC-AAACATTCAATTATAATCTGTTTTAATCAAAAT
* * * *
44579 ATAAAAAAAATTGAACTTAAAAT-AATTTAT-ATGATTATAAAACCGTTTAAAATAAGTAATAAG
65 AT-AAAAAAATTCAACTTAAAATCAA-TTATGA-GATTATAAAACCATTTAAAGTGAGTAATAAG
** * * * *
44642 GCTTGT-GATGGTATGAGTGACTACAAATAGAC-TTT-TTGCGCTA
127 GCTT-TCGAAAGAATGAGTGACTATAAATGGACTTTTCTTG-TC-A
* * ** * *
44685 ATGGATGGCTTTCGCTTTC-TGTTTCCTAAGACAAACATTCAATTATAATCTATGTTTACTAT-A
1 ATGGATGGCTTTTGC-TTCACGTTT-CTTGGGCAAACATTCAATTATAATCTGT-TTTA--ATCA
** * * * *** *
44748 AAAT-TAAAAAGGTTCAACTTAAAATCAATTATAAGATTATAAAGCTATTTAAACCAAGTAATAC
61 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAA
* * * * *
44812 GGCTTTC-AAAGGTATGAGTGACTATAACTGAACTTTTCTCGTCG
126 GGCTTTCGAAA-GAATGAGTGACTATAAATGGACTTTTCTTGTCA
*** * ** * *** * * * *
44856 ATCCTTGTCTTTCACTTCACATTTCCCAAGGCAAACAATCAATTGTAATATGTTTTAACTAAAAA
1 ATGGATGGCTTTTGCTTCACGTTT-CTTGGGCAAACATTCAATTATAATCTGTTTTAA-TCAAAA
* ********** * * * * * *
44921 TGT-AAAAANNNNNNNNNNAAATTAATTATGAGATTATAAAAACATTAAAAGCGAGTAATAATGT
64 TATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC
* * * *
44985 TTTCGAAGGCATGAGTGACTAAAAATAGACTTTTCTTGTCA
129 TTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * **
45026 AT-GAGTAGCTTTTGCTTCACATTTCTTAGAG-AAGACATTCAATGATAATCTGTTTTACCCAAA
1 ATGGA-TGGCTTTTGCTTCACGTTTCTT-GGGCAA-ACATTCAATTATAATCTGTTTTAATCAAA
********** ** * *
45089 ATAGTAAAAAAATTCAACTTNNNNNNNNNNATGA-ATTTATAAAACCATTTAAAGCAAGTATTAT
63 ATA-TAAAAAAATTCAACTTAAAATCAATTATGAGA-TTATAAAACCATTTAAAGTGAGTAATAA
* * * * * *
45153 GGCTTT-TAAGGGCATAATTGACCATAAATGGACTTTTCTTGTCA
126 GGCTTTCGAA-AGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * * * *
45197 ATGGATGG-TTTCGCTTCATGTTTATCGAGGAAAACATCCAATTATAATCTGTTTTAA-CTAANN
1 ATGGATGGCTTTTGCTTCACGTTTCTTG-GGCAAACATTCAATTATAATCTGTTTTAATC-AA-A
******** * * * * * *
45260 NNNNNNNNAAATTCAAATTAAAATCAATTATGAGGTTATAAAGCCATTTAAAATGAGTATTAATG
63 ATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGG
* * * * * * * *
45325 CTTTGGAAGGCATGAGTGATTATAAATAGACTGTTCGTGCCA
128 CTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
*** * * * * **
45367 ATGGATGGCTTACACTTTATGTTTCCTAT-GGCAAACATTTAATTATAATCTATTTTTACCCAAA
1 ATGGATGGCTTTTGCTTCACGTTT-CT-TGGGCAAACATTCAATTATAATCT-GTTTTAATCAAA
* * * * ** * *
45431 ATGTAAACAAATTTC-ACATAAAAT-AATTTATAAGATTATAAAACTGTTTACAGCGAGTAATAA
63 ATATAAA-AAAATTCAACTTAAAATCAA-TTATGAGATTATAAAACCATTTAAAGTGAGTAATAA
* * * * * * * *
45494 GGTTTTTGAAGGCATTAATGACTACAAATGGGCTTTT-TGTGTCA
126 GGCTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCT-TGTCA
* ** * ** * *
45538 ATGGATTGCTTTCACTTCACATTATTCAACGTG--AACATTCAATTATAATCTGTTTTAACTAAA
1 ATGGATGGCTTTTGCTTCAC-GT-TTC-TTGGGCAAACATTCAATTATAATCTGTTTTAA-TCAA
* * * ** * * *
45601 AATGTAAAAAAAATGAACTTAAAATCAATTATGAGATTATAAAACCATTTCGAGAGAGCAATAAT
62 AATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAG
** * * *
45666 G-TTTTTAAAGGCATAAGTGACTATAAATGGACTTTT-TCTATCA
127 GCTTTCGAAA-GAATGAGTGACTATAAATGGACTTTTCT-TGTCA
* ** * * * *
45709 ATGGATGG-TTGTTGCTTCAAGTTTCCTAAGGTAGACATTCAATTATAATATGTTTTAACCAGAA
1 ATGGATGGCTT-TTGCTTCACGTTT-CTTGGGCAAACATTCAATTATAATCTGTTTTAATCA-AA
* ** * * * ** * *
45773 ATGT---AATGTTTAACTTAAAATCAATTATGATATAATAAAACCATTTAAAACGAGTAGTAAAG
63 ATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGG
* * * * *
45835 CTTTC-AAAGGCATGTGTGATTATAAATGAACTTTTCGTGTCA
128 CTTTCGAAA-GAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * **** * * * *
45877 ATGGATGGCTTTCGCTTTACGTTTCCTACAACAAACATTCAACTATAATATGTTTTTACCAAGAA
1 ATGGATGGCTTTTGCTTCACGTTT-CTTGGGCAAACATTCAATTATAATCTGTTTTAATCAA-AA
** * * * * * * **
45942 TGCAAAAAAATTCAACCTAAAATCAAGTATG-GATTACAAAACTATTTAAAGTAAGCAATAATTC
64 TATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC
* * * * *
46006 TTTCGAAGGTATGAATGACTATAAATAGACTTTTCTTGTCN
129 TTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
********* * **** * * * *
46047 NNNNNNNNNTTTTGCTTCATGTTTCCCAATGTAGACATTCAATTATAATATGTTTTAACCAAAAA
1 ATGGATGGCTTTTGCTTCACGTTT-CTTGGGCAAACATTCAATTATAATCTGTTTTAATC-AAAA
* * * ** * ** *
46112 TGTAAAAAAAATTCACCTTAAAA-CTAATTATCAGATTACGAAACGATTTAAAGCAAGAAATAAG
64 TAT-AAAAAAATTCAACTTAAAATC-AATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAG
** * * * *
46176 ATTTTC-AAAGGCATGAG-GAACTATAAATGAACTTTTTTTGTTA
127 GCTTTCGAAA-GAATGAGTG-ACTATAAATGGACTTTTCTTGTCA
* * * ** * * *
46219 ATGGATGGCTTTCGCTTCATGTTTCCTAT-GACAAGTATTCAATTATAATATGTTTTTACTAAAA
1 ATGGATGGCTTTTGCTTCACGTTT-CT-TGGGCAAACATTCAATTATAATCTG-TTTTAATCAAA
* ** * ********** *
46283 ATGTAAATCAATTCAACTTAAAATGAATTATGAGNNNNNNNNNNCATTTAAAGCGAGTAATAAGG
63 ATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGG
* * * **
46348 CTTTC-AAAGGCATCAGTGACTATAAATAGACTTTTCTTACCA
128 CTTTCGAAA-GAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * * * *
46390 ATGGATGGCTTGTACTTCACATTTCCCTAGG-AAGACATTCAGTTATAATCTATTTTAATCAAAA
1 ATGGATGGCTTTTGCTTCACGTTT-CTTGGGCAA-ACATTCAATTATAATCTGTTTTAATCAAAA
* * * * *
46454 TATAAAAAAAGTTCAGCTTAAAATTAATTATGAGATCATAAAATCATTTAAAGTGAGTAATAATG
64 TATAAAAAAA-TTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGG
* * * * *
46519 CTTTCG-AAGTCATGGGTGACTATAAATAGAATTTTCTTCTCA
128 CTTTCGAAAG-AATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * *** * *
46561 ATGGGTGGCTTTTACTTCACATTTCTTGGAGCATGTATTCAATTTTAATTTGTTTTAA-CTAAAA
1 ATGGATGGCTTTTGCTTCACGTTTCTTGG-GCAAACATTCAATTATAATCTGTTTTAATC-AAAA
* * * * * *
46625 TAGTAAAAAAATTTAACTTAAAATTAGTTATGA-ATTTATAAAACCATTTATAGCGAGT-ATCAG
64 TA-TAAAAAAATTCAACTTAAAATCAATTATGAGA-TTATAAAACCATTTAAAGTGAGTAAT-AA
** * * * *
46688 GGCTTTCGATGGTATG-TTGAATATAAATAGG-CTTTTCTTATCA
126 GGCTTTCGAAAGAATGAGTGACTATAAAT-GGACTTTTCTTGTCA
* ** * ** * *
46731 ATGGATGGCTTTTACTTCACGTTTCCTAAGGCAAACATCCAATTAGCATCTATTTTGATGGC-AA
1 ATGGATGGCTTTTGCTTCACGTTT-CTTGGGCAAACATTCAATTATAATCTGTTTTAAT--CAAA
* ** * * * * *
46795 CTA-AAAATTATTCAACTTAAAAT-AATTTATAAGGTTATAAAATCGTTTAAAGTAAGTAATAAG
63 ATATAAAAAAATTCAACTTAAAATCAA-TTATGAGATTATAAAACCATTTAAAGTGAGTAATAAG
* * * *
46858 GCTTTTGAAGGGATGAGTGACTATAAAAAGGACTTTT-TGTGTCA
127 GCTTTCGAAAGAATGAGTGACTAT-AAATGGACTTTTCT-TGTCA
* * * ** * *
46902 ATGCATGGCTTGTGCTTTACGTTTCCTAAGGCAAACATTTAATTATAATCTGTTTTAAACAAAAA
1 ATGGATGGCTTTTGCTTCACGTTT-CTTGGGCAAACATTCAATTATAATCTGTTTTAATC-AAAA
* * * * * ****
46967 TATAAAAAAATTTAATTTAAAATCAATTATGGGACTATAAAACCATTTAAAGCGAGTAATANNNN
64 TATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC
****** * *
47032 NNNNNNAAGTATGAGTGACTATAAATGGACTTGTCTTGTCA
129 TTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * ** *
47073 ATTGATGGCTTTTGCTTTATGTTTCCTAAGGCAAACATTCAATTATAATATGTTTT-ATCCAAAA
1 ATGGATGGCTTTTGCTTCACGTTT-CTTGGGCAAACATTCAATTATAATCTGTTTTAAT-CAAAA
* * * * ** *
47137 -ATGTAAAAAATTAAACTTAAAATCGATTATGATATTATAAAACCATTTAAAGCAAGTAATAATG
64 TAT-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGG
* * * * **
47201 CTTTCGAAGGTATGAATGATTATAAATGGACTTTTCTTACCA
128 CTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * *
47243 GTGGATGGCTTTTACTTCACATTTCTTAGGGCAAACATTCAATTATAATCTATTTTGA-CAAAA-
1 ATGGATGGCTTTTGCTTCACGTTTCTT-GGGCAAACATTCAATTATAATCTGTTTTAATCAAAAT
********** * * *
47306 A-AAGTAAAAAGTTNNNNNNNNNNTCAATTATCA-ATTTATAAAACCATTTAAAGCGAGTAAT-C
65 ATAA--AAAAA-TTCAACTTAAAATCAATTATGAGA-TTATAAAACCATTTAAAGTGAGTAATAA
* * * * *
47368 GAGCTTTC-AAAGGTATGATTGACTATGAATGGACTTTTTTTGCCA
126 G-GCTTTCGAAA-GAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * **** ** *
47413 ATGGATGACTTTTGCTTCACATTTCCCAAGCAAACATTCAATTATAAAATGTTTTAA-CAAAAAA
1 ATGGATGGCTTTTGCTTCACGTTTCTTGGGCAAACATTCAATTATAATCTGTTTTAATCAAAATA
* * * * * * * *
47477 TGTAAGAAATTAAACTTAAAATTAATTATGATATTATAAAACTATTTAAAGCGAGTAATAACGCT
66 T-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCT
* * * * *
47542 TTTGAAGGCATGAGTGACTATAAATGGACTTTTTTTATCAA
130 TTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTC-A
* * * * * *
47583 AT-GATAGCTTTTGCTTCACATTTCTTGAGACAAACAATCAATTATAATCTATTTTTATCAAAAA
1 ATGGATGGCTTTTGCTTCACGTTTCTTG-GGCAAACATTCAATTATAATCTGTTTTAATC-AAAA
* * * * * *
47647 TGTAAAAAAATTCAACCTAAAATCGATTATTAGATTATAAAACTATTTAAAATGAGTAATAAGGC
64 TATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC
* * * *
47712 TTTCAAAAGTATGAGTGACTATAAATGGACTTTTATTGCCA
129 TTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * ** * * * *
47753 GTAGATGGCTTTTGCTCCACGTTTTTTCAGTAGAA-ATTCAATTATAATTTCTTTTAACCAAGAA
1 ATGGATGGCTTTTGCTTCACGTTTCTTGGGCA-AACATTCAATTATAATCTGTTTTAATCAA-AA
* * * * * *
47817 TGT-AAAAAATTAAACTTAAAATCAATTATGAGATTATAGAACCAATTAAAGCGAGTAATAATGC
64 TATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC
* * * * * * *
47881 TTTC-ATAGGCATGAGTGAATATAAATAGACTTTTTTTATTA
129 TTTCGA-AAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * * * *
47922 ATGGGTGTCTTTTGCTTCACATTTCTCTAGGCAAGCATTCAATTATAATATGTTTCAA-CTAAAA
1 ATGGATGGCTTTTGCTTCACGTTTCT-TGGGCAAACATTCAATTATAATCTGTTTTAATC-AAAA
* * * * * **
47986 TAGTAAAACAATTCAACTTAAAATTAATTAT-AAATTTAGAAAACCGTTTAAAGCAAGTAATAAG
64 TA-TAAAAAAATTCAACTTAAAATCAATTATGAGA-TTATAAAACCATTTAAAGTGAGTAATAAG
* * * * * *
48050 GCTTTTGAAGGCATGATTGAGTATAAATGAACTTTTCTTGTCA
127 GCTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * ** * * * * ** ***
48093 ACGGATCG-TATTTGCTTTATATTTCTCGAGGTAAACATCCAATTATCATCTACTTTAATGGCAA
1 ATGGATGGCT-TTTGCTTCACGTTTCTTG-GGCAAACATTCAATTATAATCTGTTTTAATCAAAA
* * * * * *
48157 T-TAAAAACAATTCAACTTGAAAT-AAGTTATAAGGTTGTAAAATCATTTAAAGTGAGTAATATG
64 TATAAAAA-AATTCAACTTAAAATCAA-TTATGAGATTATAAAACCATTTAAAGTGAGTAATAAG
* * * * *
48220 GCTTTCGAAGGAATGATTGACTATAAGTGGGCTTTTCTTATCA
127 GCTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* * ** ** * * * * *
48263 GTGGATAGCTTGGGCTTCACGTTTCTCAAGGTAAATA-TCTAATTGTAATCTATTTTAATGAAAA
1 ATGGATGGCTTTTGCTTCACGTTTCT-TGGGCAAACATTC-AATTATAATCTGTTTTAATCAAAA
* * *
48327 CTAAAAAAAAATTCAGCTTAAAAT-AATT-TGTTAGATTATAAAATCATTTAAAGTGAAG-AATA
64 -TATAAAAAAATTCAACTTAAAATCAATTATG--AGATTATAAAACCATTTAAAGTG-AGTAATA
* ** * * *
48389 AGGCTTTCGAAAGTATGAGCAACAATAAATAGACTTTTCGTGTCA
125 AGGCTTTCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
* **
48434 GTGGATGGCTTTCACTTCACGTTT
1 ATGGATGGCTTTTGCTTCACGTTT
48458 AGGGTTGTTA
Statistics
Matches: 10282, Mismatches: 2913, Indels: 1265
0.71 0.20 0.09
Matches are distributed among these distances:
157 2 0.00
158 10 0.00
159 6 0.00
160 13 0.00
161 26 0.00
162 106 0.01
163 134 0.01
164 24 0.00
165 22 0.00
166 19 0.00
167 194 0.02
168 509 0.05
169 1513 0.15
170 2626 0.26
171 3660 0.36
172 1001 0.10
173 168 0.02
174 86 0.01
175 30 0.00
176 4 0.00
177 10 0.00
178 2 0.00
179 1 0.00
180 6 0.00
181 3 0.00
182 1 0.00
183 2 0.00
184 2 0.00
185 1 0.00
186 8 0.00
187 3 0.00
188 8 0.00
189 16 0.00
190 10 0.00
191 3 0.00
192 5 0.00
193 4 0.00
194 4 0.00
195 4 0.00
196 3 0.00
197 2 0.00
198 7 0.00
199 9 0.00
200 4 0.00
201 2 0.00
202 6 0.00
203 3 0.00
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.34
Consensus pattern (169 bp):
ATGGATGGCTTTTGCTTCACGTTTCTTGGGCAAACATTCAATTATAATCTGTTTTAATCAAAATA
TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
TCGAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCA
Found at i:36143 original size:169 final size:169
Alignment explanation
Indices: 35824--36143 Score: 398
Period size: 169 Copynumber: 1.9 Consensus size: 169
35814 ACACCAACGG
* * * *
35824 ATGGCTTTCGCTTCACTTTTCCTAGGGAAAACATTCAATTATAATCTATGTTTACCAAAAATTTG
1 ATGGCTTTCGCTTCACTTTTCCTAGGCAAAACAATCAATTATAA-CTATGTTTACCAAAAATGTA
* * * * * *
35889 AAAAGATTCATCCTAAAATCAATTATAAGAGTATAAACTTATTTAAATCGAGTAATAAGGCTTTC
65 AAAAAATTCAACCTAAAACCAATTATAAGAGTATAAAATTATTAAAAGCGAGTAATAAGGCTTTC
*
35954 AAAGGCATGGGTGACTATAAATAATTTTTTTTTTGAATCT
130 AAAGGCATGAGTGACTATAAATAATTTTTTTTTTGAATCT
* *
35994 ATGGCTTTTGCTTCA-TGTTTCTTGAGGCAAAA-AATCAATTATAA-TATGTTTCAACC-AAAAT
1 ATGGCTTTCGCTTCACT-TTTCCT-AGGCAAAACAATCAATTATAACTATGTTT--ACCAAAAAT
* * * *
36055 GTAAAAAAATTCAACTTAAAACCAATTATGAGATTATAAAATTATTAAAAGCGAGTAATAATGCT
62 GTAAAAAAATTCAACCTAAAACCAATTATAAGAGTATAAAATTATTAAAAGCGAGTAATAAGGCT
36120 TTCGAAA-GCATGAGTGACTATAAA
127 TTC-AAAGGCATGAGTGACTATAAA
36144 CGGACTTTTC
Statistics
Matches: 128, Mismatches: 17, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
168 7 0.05
169 78 0.61
170 36 0.28
171 7 0.05
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (169 bp):
ATGGCTTTCGCTTCACTTTTCCTAGGCAAAACAATCAATTATAACTATGTTTACCAAAAATGTAA
AAAAATTCAACCTAAAACCAATTATAAGAGTATAAAATTATTAAAAGCGAGTAATAAGGCTTTCA
AAGGCATGAGTGACTATAAATAATTTTTTTTTTGAATCT
Found at i:37040 original size:163 final size:163
Alignment explanation
Indices: 36740--37070 Score: 368
Period size: 163 Copynumber: 2.0 Consensus size: 163
36730 CAAAAAAAGT
* * * *
36740 AAAAAAATTTAACTTAAAATCATTTATGAATTTATAAAACCATTTAAAACAAGTAATTGGGTTTT
1 AAAAAAATTCAACTTAAAATAATTTATGAATTTATAAAACCATTTAAAACAAGTAATAGGCTTTT
* *** * * ** *
36805 CGAAGGCATGGTTGAGTGTGAATGGACTTTTCTTGTCAATGGATATTTTTCGCTTCACTTTTTCT
66 CGAAGGCATGGTTGACTAAAAATGGACTTTTCTTGTCAATAGATACTTTTCGCTTCACGCTTCCT
* *
36870 GAGGCAAACATCCAATTATCATCTATTTTAACA
131 AAGGCAAACATCCAATTATAATCTATTTTAACA
* *
36903 AAAAAAATTCAACTTAAAATAATTTATGAGA-TTATAAAATCATTTAAAA-AAGGTTATAAGGCT
1 AAAAAAATTCAACTTAAAATAATTTATGA-ATTTATAAAACCATTTAAAACAA-GTAAT-AGGCT
* *
36966 TTT-GAAGGCATGAG-TGACTAAAAATGGAGTTTT-TGTGTCAATAGATCACTTTT-GCTTCTCG
63 TTTCGAAGGCATG-GTTGACTAAAAATGGACTTTTCT-TGTCAATAGAT-ACTTTTCGCTTCACG
* * *
37027 CTTCCTAAGGCAAACATTCAATTATAATTTGTTTTAACA
125 CTTCCTAAGGCAAACATCCAATTATAATCTATTTTAACA
37066 AAAAA
1 AAAAA
37071 GGTCAAAAAA
Statistics
Matches: 140, Mismatches: 22, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
162 3 0.02
163 124 0.89
164 13 0.09
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.36
Consensus pattern (163 bp):
AAAAAAATTCAACTTAAAATAATTTATGAATTTATAAAACCATTTAAAACAAGTAATAGGCTTTT
CGAAGGCATGGTTGACTAAAAATGGACTTTTCTTGTCAATAGATACTTTTCGCTTCACGCTTCCT
AAGGCAAACATCCAATTATAATCTATTTTAACA
Found at i:42674 original size:682 final size:672
Alignment explanation
Indices: 39439--42733 Score: 1345
Period size: 685 Copynumber: 4.9 Consensus size: 672
39429 ATTCTTAGGG
* * * * * *
39439 CAAACATTCAATTATAATCTGTTTTGACAAAAAAAGTAAAAAAATTCAACTTAAAATCATTTATG
1 CAAACATTCAATTATAATATGTTTTAAC-TAAAATGTAAAAAAATTCAACTTAAAATCAATGATG
* * * * * * * *
39504 AATTTATAAAACCAT-TAAAAGCAAGTAATTAGG-TTTGCGAACGCATGATTGAGTGTGAATGGA
65 AATTTATAAAACCATGT-AAAGCAAGTAATAAGGCTTT-CAAAGGCAAGAGTGACTATAAATGGA
* * * * * * * *
39567 CTTTTCTTATCAATGGATGTCTTTCACTTCACCTTTTC-TGAGGCAAACATCCAA-TT-ATCATC
128 CTCTTCATGTCAAAGGATGACTTTTACTTCA-CGTTTCATGAGGAAAACATCCAATTTAAT-ATC
* * * * * * *** *
39629 TATTTTAACAAAAACA-AAAAAACATTCAACTTAAAAT-AATTTATGAGATTATAAAATTGTTTA
191 TACTTTAATAAAAATATAAAAAA-ATTCAACTCAAAATCAA-TTATAAGAATATAAAACCATCTA
** * * * ** * * * * * * * * *
39692 AAAAGGGTAATAAAGCTTTTGAAGGCATGAGTGAGTGCAAATGGAGTTTTTGTGTCAAT-CGATC
254 AACCGAGTAACAAGGCTTCCGAAGGCATAAGAGACTACAAATGAACTTCTCGTGTCAATGC-ATG
* * * * * * * * *
39756 ACTTTTGCTTCTCGTTTCCTAAGGTC-AACATTCAATTATAATCTGTTTTAATAAAAAATGTCAA
318 GCTTTTACTTCACGTTTCCTAAAG-CAAACAATCAACTATAATCTATTTTAACAAAAAATAT-AA
** * * * * *
39820 AAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGG-TTCT-G
381 AAAATTCAACTTAAAATCAATTACAAGACTAT-AAACCATTTAAAGCGAGTAACAAGGCTTTTCA
*** * * * * ** * * * *
39883 AAGGCATAAGTGA-TCTAAATTGACTTTTCTT-ATAATGGATGGCTTTTTTTCTCATGTTTCCTA
445 AATAAATGAGTGACTATAAATAGACTTTTATTGCCAATGAATGGCTTTCTCT-TCATGTTT-TTA
* *
39946 T-GG-AGACATTCAATTATAATCTAGT-TT-AAC-AACAATGTAAAAGA-ATTCAACTTAAAATC
508 TAGGCAGACATTCAATTAT-AT-TA-TCTTGAACTAAAAATGTAAAAAATATTCAACTTAAAATC
** * * *
40005 AATTATAAGATTATAAAACCATTTAAAGCGAGTAATAATGCTTTTGAAGGCATGAGTGACTATAA
570 AATTACGAGATTATAAAGCCATTTAAAACGAGTAATAAGGC--TT------A--AGTGACTATAA
* * * *
40070 ATATACTTTTCTTGTCAA-TGGAT-GGTTTTTGCTACATGTTTCTCCAAG-
625 ATAGACTTTTCTTATCAATTGG-TGGGTTTTT-CTTCAAGTTTCT-CAAGA
* * * * *
40118 CAGACATTCAATTATAATCTG--TT--CT--AA--TAAAAAAATTCAACGTAAAATCTACT-TTG
1 CAAACATTCAATTATAATATGTTTTAACTAAAATGTAAAAAAATTCAACTTAAAATC-AATGATG
* * * * * * * * * *
40174 AATTTATAAAACCATTTAAAAG-GAGTGATATGGTTTTTAGAGGCATGATTGACTATGAATGGAC
65 AATTTATAAAACCATGT-AAAGCAAGTAATAAGGCTTTCAAAGGCAAGAGTGACTATAAATGGAC
* ** * * * * * * *
40238 TTTTTTTGTCGATGGATGGCTTTTGCTTCAGGTTTCTTGA-GAGAACATCCAA-TT-ATCATCTA
129 TCTTCATGTCAAAGGATGACTTTTACTTCACGTTTCATGAGGAAAACATCCAATTTAAT-ATCTA
* * * *
40300 -TTTTATCAAAAAT-TAAAAAAATAT-AACTTAAAAT-AATTTATAAGAATATAAAACCGTTTAA
193 CTTTAAT-AAAAATATAAAAAAAT-TCAACTCAAAATCAA-TTATAAGAATATAAAACCATCTAA
** * * * * * * * * * *
40361 AGAGAGTAATAAGGCTTTCGAATGCATGAGTGATTATAAATGGACTTTTCGTTTCAATAG-ATGG
255 ACCGAGTAACAAGGCTTCCGAAGGCATAAGAGACTACAAATGAACTTCTCGTGTCAAT-GCATGG
* * * ** * * * * * * *
40425 CTTTTGCTTCATGTTTCTTATGGCAAACATTCAATTATAATCTACTTTCACTAGAAATTTAAAAA
319 CTTTTACTTCACGTTTCCTAAAGCAAACAATCAACTATAATCTATTTTAACAAAAAATAT-AAAA
* * ** * * * * *
40490 AATTCAAGTCAAAATCAATTATGAGATTATAAAACCATTTAAACCGAGAAATAA-GATTTTCAAA
383 AATTCAACTTAAAATCAATTACAAGACTAT-AAACCATTTAAAGCGAGTAACAAGGCTTTTCAAA
** * * * * * * **
40554 TGCATGAGTGACTATGAATAAACTTGTT-TTGTCAATGCATAG-TTTTTGCTTCATGTTTCCCA-
447 TAAATGAGTGACTATAAATAGACTT-TTATTGCCAATGAATGGCTTTCT-CTTCATGTTT-TTAT
* * * * * * * *
40616 AGGCAAACAATCAACTATAATCT-TTTTTAACAAAAAATATAAAAAA-ATTCAACTTAAAATGAA
509 AGGCAGACATTCAATTAT-AT-TATCTTGAACTAAAAATGTAAAAAATATTCAACTTAAAATCAA
* ********** **
40679 TTATGANNNNNNNNNNCCATTTAAAGTGAGTAATAAGGCTTTCGAAAGCATAAGTGACTATAAAT
572 TTACGAGATTATAAAGCCATTTAAAACGAGTAATAAGGC--T--------TAAGTGACTATAAAT
* ********** * * * * *
40744 GGACTTTTCTNNNNNNNNNNTAGCTTTTGCTTCACGTTT-TCTAGA
627 AGACTTTTCTTATCAATTGGTGGGTTTTTCTTCAAGTTTCTCAAGA
* * * * ***
40789 CATACATTCAATTATAATCTATTTTAACTAAGAATGTAAAAAAAATTCAACTAAAAATCAATNNN
1 CAAACATTCAATTATAATATGTTTTAACTAA-AATGT-AAAAAAATTCAACTTAAAATCAATGAT
******* * * * ** ** * * * *
40854 NNNNNNNTAAAACCATTTAAAGCGAGTAATAATGCTTTGGAAGGCATTAGTGACAAGAAGTAGAC
64 GAATTTATAAAACCATGTAAAGCAAGTAATAAGGCTTTCAAAGGCAAGAGTGACTATAAATGGAC
* * * * * * ** * *
40919 -CTTTCTTGTCAATGGGTGAGTTTTGCTTTC-TGTTTC-TTTGGATAGACATTCAA-TT-ATAAT
129 TC-TTCATGTCAAAGGATGACTTTTAC-TTCACGTTTCATGAGGA-AAACATCCAATTTAAT-AT
** ** * * * *
40979 CTGTTTTAACCAAAATAGTAAAAATATTCAATTTAAAATCAATTAT--GAATTAATAAAACCATT
190 CTACTTTAATAAAAATA-TAAAAAAATTCAACTCAAAATCAATTATAAGAA-T-ATAAAACCATC
** * * ** ** * ** * ** ***
41042 TAAAATGAGTAATAGGGCTTTTGAAGGCATGACTA-ACTATAAATGTATTTTTTTTTGTCAACAA
252 TAAACCGAGTAACAAGGCTTCCGAAGGCAT-AAGAGACTACAAATG-AACTTCTCGTGTCAATGC
* * * * * * * * ** * *
41106 ATGGCATTTGCTTTACGTTTCTTGAGGCAAAC-ATCCAATTATCATCTATTTTAATGAGAATTGA
315 ATGGCTTTTACTTCACGTTTCCTAAAGCAAACAAT-CAACTATAATCTATTTTAACAAAAAAT-A
* * * * *** ** **
41170 AAAAAAAGTTCAACTTAAAAT-AATTTATAAGATTAGAAAACCATTTAAAATAAGTAGTAAAAC-
378 TAAAAAA-TTCAACTTAAAATCAA-TTACAAGACTA-TAAACCATTTAAAGCGAGTAACAAGGCT
* *** * ** * * *
41233 TTTCGAAGGTATGAGTGACTATGAATAGACCTTCCA-T-CTCAATGGATGGCCTTCGCTTCATGT
440 TTTCAAATAAATGAGTGACTATAAATAGA-CTTTTATTGC-CAATGAATGGCTTTCTCTTCATGT
* * * * * * *
41296 TTCCTA-AGGCAAACATTCAATTACAATCTGCTTTAA-TCAAAAATGT-AAAAACATTCAACTTA
503 TT-TTATAGGCAGACATTCAATTATATTAT-CTTGAACT-AAAAATGTAAAAAATATTCAACTTA
* * * * * * * *
41358 AAATCAATTATGAGATTACAAAACCATTTCAAGCGAGAAATAATGCTTTCGAGGGCATGAATGAA
565 AAATCAATTACGAGATTATAAAGCCATTTAAAACGAGTAATAAGGC-TT--A----A-G--TGAC
* * * * * * * *
41423 TATAAATGGACTTCTT-TTGTCAATTGATGGCTTTTGCTTCATGTTTCCCAAGG
620 TATAAATAGACTT-TTCTTATCAATTGGTGGGTTTTTCTTCAAGTTTCTCAAGA
*** ** **
41476 TGGATGTTCAATTATAATATGTTTTGCCTAAAATGTAAAAAAATTCAACTTAAAATCAATGATGA
1 CAAACATTCAATTATAATATGTTTTAACTAAAATGTAAAAAAATTCAACTTAAAATCAATGATGA
* * * * *
41541 GTTTATAAGACCATTTAAAGCGAGTAGTAAGGCTTTCAAAGGCAAGAGTGACTATAAATGGACTC
66 ATTTATAAAACCATGTAAAGCAAGTAATAAGGCTTTCAAAGGCAAGAGTGACTATAAATGGACTC
* ** * * *
41606 TTCATGTCAAAGGATGGCTTTTACTTCACGTTTTTTGAGGAAAACATTCAATTTTAATATGTTCT
131 TTCATGTCAAAGGATGACTTTTACTTCACGTTTCATGAGGAAAACATCCAA-TTTAATATCTACT
** *
41671 TTTCTAAAAATATAAAAAAATTCAACTCAAAATCAATTATGAGAATATAAAACCATCTAAACCGA
195 TTAATAAAAATATAAAAAAATTCAACTCAAAATCAATTATAAGAATATAAAACCATCTAAACCGA
* * * * * * *
41736 GTAATAAGGCTTTCGAAGGCATAAGAGACTATATATGAACTTTTCTTGTCAATGCATTGCTTTTA
260 GTAACAAGGCTTCCGAAGGCATAAGAGACTACAAATGAACTTCTCGTGTCAATGCATGGCTTTTA
* * *
41801 CTTCACGTTTCCTAAAGCAAACAATCAACTATAATCTATTTTAACAAAAAATGTAAAACATTGAA
325 CTTCACGTTTCCTAAAGCAAACAATCAACTATAATCTATTTTAACAAAAAATATAAAAAATTCAA
* *
41866 CTTAAAATCAATTACAAGACTATAAACCATTTAAAGCGAGTAACAGGGCTTTTCGAATAAATGAG
390 CTTAAAATCAATTACAAGACTATAAACCATTTAAAGCGAGTAACAAGGCTTTTCAAATAAATGAG
*
41931 TGACTATAAATAGACTTTTATTGCCAATGAATGGCTTTCTCTTCATGTTTTTTTAGGCAGACATT
455 TGACTATAAATAGACTTTTATTGCCAATGAATGGCTTTCTCTTCATGTTTTTATAGGCAGACATT
* * *
41996 TAATTGCA-ATCTAT-TTTAACTAAAAATGTAAAACAA-ATTCAATTTAAAATCAATTACGAGAT
520 CAATT--ATAT-TATCTTGAACTAAAAATGTAAAA-AATATTCAACTTAAAATCAATTACGAGAT
42058 TATAAAGCCATTTAAAACGAGTAATAAGGCTTNNNNNNNNNNAAGTGACTATAAATAGACTTTTC
581 TATAAAGCCATTTAAAACGAGTAATAAGGCTT----------AAGTGACTATAAATAGACTTTTC
42123 TTATCAATTGGTGGGTTTTTCTTCAAGTTTCTCAAGA
636 TTATCAATTGGTGGGTTTTTCTTCAAGTTTCTCAAGA
* * * *
42160 CAAACATTCAATTATAATCTGTTTTAACTAAAATAGTAAAAAAGTTTAACTTAAAATCAATTATG
1 CAAACATTCAATTATAATATGTTTTAACTAAAAT-GTAAAAAAATTCAACTTAAAATCAATGATG
* * *
42225 AATTTATAAAACCATGTAAAGCAAGTAAT-AGGACTTTCGAAGGCATGATTGACTATAAATGGAC
65 AATTTATAAAACCATGTAAAGCAAGTAATAAGG-CTTTCAAAGGCAAGAGTGACTATAAATGGAC
* *** *
42289 TTTTCTAT-TCAACA-GATGACATTTT-CTTGGTGTTTCATGA-GCAAACATCCAA-TT-ATCAT
129 TCTTC-ATGTCAA-AGGATGAC-TTTTACTTCACGTTTCATGAGGAAAACATCCAATTTAAT-AT
* * * * * * * *
42348 CTACTTTAATGAGAACTA-AAAACAATTCAGCTTAAAAT-AATTCATAAGATTATAAAA-TAGTT
190 CTACTTTAAT-AAAAATATAAAAAAATTCAACTCAAAATCAATT-ATAAGAATATAAAACCA-TC
** * * * *
42410 TAAAGTGAGTAACAAGGCTTCCGAAGGCATGAGTGACTACAAATGGACTTCTGGTGTCAACTG-A
252 TAAACCGAGTAACAAGGCTTCCGAAGGCATAAGAGACTACAAATGAACTTCTCGTGTCAA-TGCA
* * * * * * *
42474 TGGCTTTTACTTCATGTTTCCTAAGGCAAACATTCAATTGTCATCTGTTTTAACAAAAAATATAA
316 TGGCTTTTACTTCACGTTTCCTAAAGCAAACAATCAACTATAATCTATTTTAACAAAAAATATAA
* * * * * *
42539 AAAATTCTACTTAAAATCAATTACAAGATTATAAAACTATTTCAAGCGAGTAATAATGC-TTTCA
381 AAAATTCAACTTAAAATCAATTACAAGACTAT-AAACCATTTAAAGCGAGTAACAAGGCTTTTCA
* * ***********
42603 AAGT-CATGAGTGACTATAAATGGACTTTTCNNNNNNNNNNATGGCTTT-TGCTTCATGTTTCTT
445 AA-TAAATGAGTGACTATAAATAGACTTTTATTGCCAATGAATGGCTTTCT-CTTCATGTTT-TT
* *
42666 AT-GGCAGACATTCAATTATATTATGCTTGAATTAAAAATGTAAAAAATTTTCAACTTAAAATCA
507 ATAGGCAGACATTCAATTATATTAT-CTTGAACTAAAAATGTAAAAAATATTCAACTTAAAATCA
42730 ATTA
571 ATTA
42734 TGAGNNNNNN
Statistics
Matches: 2012, Mismatches: 473, Indels: 259
0.73 0.17 0.09
Matches are distributed among these distances:
667 2 0.00
668 191 0.09
669 48 0.02
670 127 0.06
671 60 0.03
672 88 0.04
673 7 0.00
674 1 0.00
675 3 0.00
677 3 0.00
678 2 0.00
679 21 0.01
680 13 0.01
681 96 0.05
682 318 0.16
683 140 0.07
684 216 0.11
685 344 0.17
686 278 0.14
687 48 0.02
688 5 0.00
691 1 0.00
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.34
Consensus pattern (672 bp):
CAAACATTCAATTATAATATGTTTTAACTAAAATGTAAAAAAATTCAACTTAAAATCAATGATGA
ATTTATAAAACCATGTAAAGCAAGTAATAAGGCTTTCAAAGGCAAGAGTGACTATAAATGGACTC
TTCATGTCAAAGGATGACTTTTACTTCACGTTTCATGAGGAAAACATCCAATTTAATATCTACTT
TAATAAAAATATAAAAAAATTCAACTCAAAATCAATTATAAGAATATAAAACCATCTAAACCGAG
TAACAAGGCTTCCGAAGGCATAAGAGACTACAAATGAACTTCTCGTGTCAATGCATGGCTTTTAC
TTCACGTTTCCTAAAGCAAACAATCAACTATAATCTATTTTAACAAAAAATATAAAAAATTCAAC
TTAAAATCAATTACAAGACTATAAACCATTTAAAGCGAGTAACAAGGCTTTTCAAATAAATGAGT
GACTATAAATAGACTTTTATTGCCAATGAATGGCTTTCTCTTCATGTTTTTATAGGCAGACATTC
AATTATATTATCTTGAACTAAAAATGTAAAAAATATTCAACTTAAAATCAATTACGAGATTATAA
AGCCATTTAAAACGAGTAATAAGGCTTAAGTGACTATAAATAGACTTTTCTTATCAATTGGTGGG
TTTTTCTTCAAGTTTCTCAAGA
Found at i:49239 original size:172 final size:172
Alignment explanation
Indices: 49061--49500 Score: 414
Period size: 172 Copynumber: 2.6 Consensus size: 172
49051 ACATTTTTTA
* *
49061 AGGCAAACATCCAATTATCATCTATTTTAA-TGAAAATTGAAAAAAAAAATCAACCTAAAAT-AA
1 AGGCAAACATCCAATTATAATCTATTTTAACT-AAAAATGAAAAAAAAAATCAACCTAAAATCAA
* *
49124 TTTACAAGATTATAAAACCGTTTACAA-TGAGTAATAAGGCTTTCGAAGGTATGAGTGACTACAA
65 -TTACAAGATTATAAAACCATTT-CAAGCGAGTAATAAGGCTTTCGAAGGTATGAGTGACTACAA
*
49188 ATGGACTTTT-TGTGTCAATGGATGGGTTGCACTATAGGTTTCTTG
128 ATAGACTTTTAT-TGTCAATGGATGGGTTGCACTATAGGTTTCTTG
** * * * ** **
49233 AGGCAAACATTGAATTGTAATCTGTTTTAACTAAAAATGTAAAAAAAAATTGAGTTAAAATCAAT
1 AGGCAAACATCCAATTATAATCTATTTTAACTAAAAATGAAAAAAAAAATCAACCTAAAATCAAT
** * * * *
49298 TATTAGATTATAAAACTATTTCAAGCGAGTAATAATGCTTTTGAAGGTATGAGTGACTATAAATA
66 TACAAGATTATAAAACCATTTCAAGCGAGTAATAAGGCTTTCGAAGGTATGAGTGACTACAAATA
* * * **
49363 GACTTTTATTGTCAATGGATGGCTTTGGCTTCT-CA--TTTCTCA
131 GACTTTTATTGTCAATGGATGG-GTT-GC-ACTATAGGTTTCTTG
* * * * * * *
49405 AGGCAGACATTCAATTATAATCTATTTTGAC-AAAAAAG-TAAAAAAATTCAACTTAAAATCAAT
1 AGGCAAACATCCAATTATAATCTATTTTAACTAAAAATGAAAAAAAAAATCAACCTAAAATCAAT
* * * *
49468 TATGAA-TTTATAAAACCATTTGAATCGAGTAAT
66 TA-CAAGATTATAAAACCATTTCAAGCGAGTAAT
49501 CGAGGTTTGA
Statistics
Matches: 218, Mismatches: 42, Indels: 18
0.78 0.15 0.06
Matches are distributed among these distances:
170 45 0.21
171 10 0.05
172 152 0.70
173 6 0.03
174 3 0.01
175 2 0.01
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (172 bp):
AGGCAAACATCCAATTATAATCTATTTTAACTAAAAATGAAAAAAAAAATCAACCTAAAATCAAT
TACAAGATTATAAAACCATTTCAAGCGAGTAATAAGGCTTTCGAAGGTATGAGTGACTACAAATA
GACTTTTATTGTCAATGGATGGGTTGCACTATAGGTTTCTTG
Found at i:54710 original size:29 final size:29
Alignment explanation
Indices: 54672--54805 Score: 119
Period size: 29 Copynumber: 4.6 Consensus size: 29
54662 TAACGTATTT
* *
54672 GTCTTAATTTAGATAAGAAAACATGTTTG
1 GTCTTAATTTAGACAAGAAAACATGTTTC
*
54701 GTCTTAATTTAGACAAGAAAATATG-TTC
1 GTCTTAATTTAGACAAGAAAACATGTTTC
* * * * *
54729 GCCTTAATTTAAAGCAAGAAAAATATTTTTT
1 GTCTTAATTTAGA-CAAG-AAAACATGTTTC
* * *
54760 GTCTTAATCTAGACAAGAAAACATATGT-
1 GTCTTAATTTAGACAAGAAAACATGTTTC
* *
54788 GTCTCAATTTAAACAAGA
1 GTCTTAATTTAGACAAGA
54806 TAAAATATTT
Statistics
Matches: 86, Mismatches: 16, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
28 28 0.33
29 35 0.41
30 11 0.13
31 12 0.14
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.34
Consensus pattern (29 bp):
GTCTTAATTTAGACAAGAAAACATGTTTC
Found at i:54754 original size:30 final size:29
Alignment explanation
Indices: 54669--54836 Score: 146
Period size: 28 Copynumber: 5.7 Consensus size: 29
54659 CTTTAACGTA
* * *
54669 TTTGTCTTAATTTAGATAAG-AAAACATG
1 TTTGTCTTAATTTAAACAAGAAAAATATG
*
54697 TTTGGTCTTAATTTAGACAAG-AAAATATG
1 TTT-GTCTTAATTTAAACAAGAAAAATATG
* * *
54726 TTCGCCTTAATTTAAAGCAAGAAAAATATTT
1 TTTGTCTTAATTTAAA-CAAGAAAAATA-TG
* *
54757 TTTGTCTTAATCTAGACAAGAAAACATATG
1 TTTGTCTTAATTTAAACAAGAAAA-ATATG
* *
54787 --TGTCTCAATTTAAACAAGATAAAATATT
1 TTTGTCTTAATTTAAACAAGA-AAAATATG
*
54815 TTTGTCTTAATTAAAAACAAGA
1 TTTGTCTTAATT-TAAACAAGA
54837 GTTGTCTTAA
Statistics
Matches: 114, Mismatches: 17, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
28 34 0.30
29 32 0.28
30 24 0.21
31 24 0.21
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.36
Consensus pattern (29 bp):
TTTGTCTTAATTTAAACAAGAAAAATATG
Found at i:54773 original size:59 final size:58
Alignment explanation
Indices: 54701--54825 Score: 166
Period size: 59 Copynumber: 2.1 Consensus size: 58
54691 AACATGTTTG
* *
54701 GTCTTAATTTAGACAAG-AAA-ATATGTTCGCCTTAATTTAAAGCAAGA-AAAATATTTTTT
1 GTCTTAATCTAGACAAGAAAACATATG-T-GCCTCAATTTAAA-CAAGATAAAATA-TTTTT
*
54760 GTCTTAATCTAGACAAGAAAACATATGTGTCTCAATTTAAACAAGATAAAATATTTTT
1 GTCTTAATCTAGACAAGAAAACATATGTGCCTCAATTTAAACAAGATAAAATATTTTT
54818 GTCTTAAT
1 GTCTTAAT
54826 TAAAAACAAG
Statistics
Matches: 60, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
58 18 0.30
59 33 0.55
60 4 0.07
61 5 0.08
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.37
Consensus pattern (58 bp):
GTCTTAATCTAGACAAGAAAACATATGTGCCTCAATTTAAACAAGATAAAATATTTTT
Found at i:58712 original size:18 final size:18
Alignment explanation
Indices: 58685--58725 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
58675 CAGAGGTGGC
58685 AACTAAACACCTTGCTGA
1 AACTAAACACCTTGCTGA
* *
58703 AACTAGACACCTTGCTTA
1 AACTAAACACCTTGCTGA
58721 AACTA
1 AACTA
58726 CCATAGGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.39, C:0.27, G:0.10, T:0.24
Consensus pattern (18 bp):
AACTAAACACCTTGCTGA
Found at i:60066 original size:38 final size:39
Alignment explanation
Indices: 59957--60077 Score: 167
Period size: 38 Copynumber: 3.1 Consensus size: 39
59947 ATTGCATCAG
*
59957 CTACCACA-AAACCAAATC-AAGGGTAAGACCATGTCAA
1 CTACCAAACAAACCAAATCAAAGGGTAAGACCATGTCAA
* *
59994 CTACCAAACAAAGTCATATCAAAAGGGTAAGACCATGTCAA
1 CTACCAAACAAA-CCAAATC-AAAGGGTAAGACCATGTCAA
*
60035 CTACC-AACGAACCAAATCAAAGGGTAAGACCATGTCAA
1 CTACCAAACAAACCAAATCAAAGGGTAAGACCATGTCAA
60073 CTACC
1 CTACC
60078 CAATCAAGCT
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
37 7 0.09
38 28 0.38
39 10 0.14
40 5 0.07
41 24 0.32
ACGTcount: A:0.45, C:0.26, G:0.14, T:0.15
Consensus pattern (39 bp):
CTACCAAACAAACCAAATCAAAGGGTAAGACCATGTCAA
Found at i:62032 original size:55 final size:57
Alignment explanation
Indices: 61921--62036 Score: 139
Period size: 55 Copynumber: 2.1 Consensus size: 57
61911 TGACTTATGA
* * * **
61921 ATTTAAAACAAAATAAAAAAAGCTAAGTACTTTCTTCCTTAATTTGTAGGTTTAAGG
1 ATTTAAAACAAAATAAAAAAACCTAAGTACTTTCTTCCCTAATATGTAGGAATAAGG
* *
61978 ATTTAAAAC-AAA-AAAATAACCTAATTACTTTCTTCCCTAATATGATA-GAATAAGG
1 ATTTAAAACAAAATAAAAAAACCTAAGTACTTTCTTCCCTAATATG-TAGGAATAAGG
62033 ATTT
1 ATTT
62037 TGTGTCCAAA
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
55 37 0.73
56 5 0.10
57 9 0.18
ACGTcount: A:0.44, C:0.12, G:0.09, T:0.34
Consensus pattern (57 bp):
ATTTAAAACAAAATAAAAAAACCTAAGTACTTTCTTCCCTAATATGTAGGAATAAGG
Found at i:65084 original size:46 final size:46
Alignment explanation
Indices: 64978--65076 Score: 155
Period size: 46 Copynumber: 2.2 Consensus size: 46
64968 CTCACCTGAA
* * *
64978 AGCAAAAATAGAAGCCGCGTCTGGGTTGCTGGAGGAGGGTGGAGAG
1 AGCAAAAATAGCAGCCGCGTCTGGGTTGCGGGAGGAGAGTGGAGAG
*
65024 AGCAAAAATAGCAGCCGCGTCTGGGTTGCGGGAGGAGAGTGGAGGG
1 AGCAAAAATAGCAGCCGCGTCTGGGTTGCGGGAGGAGAGTGGAGAG
65070 A-CAAAAA
1 AGCAAAAA
65077 ATCGCAGCTT
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
45 6 0.12
46 43 0.88
ACGTcount: A:0.31, C:0.14, G:0.41, T:0.13
Consensus pattern (46 bp):
AGCAAAAATAGCAGCCGCGTCTGGGTTGCGGGAGGAGAGTGGAGAG
Found at i:66506 original size:26 final size:26
Alignment explanation
Indices: 66470--66520 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
66460 AAGCCGTTGC
* *
66470 TTTTGTTTTTTTTTCCTTTTTTTCTG
1 TTTTCTTTTTTTGTCCTTTTTTTCTG
66496 TTTTCTTTTTTTGTCCTTTTTTTCT
1 TTTTCTTTTTTTGTCCTTTTTTTCT
66521 TTCTCTCTCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.00, C:0.14, G:0.06, T:0.80
Consensus pattern (26 bp):
TTTTCTTTTTTTGTCCTTTTTTTCTG
Found at i:69267 original size:26 final size:28
Alignment explanation
Indices: 69237--69308 Score: 121
Period size: 28 Copynumber: 2.6 Consensus size: 28
69227 AACAAATAAC
*
69237 ATAACATAATGTTTAAA-A-ATATATAT
1 ATAACATAATATTTAAATATATATATAT
69263 ATAACATAATATTTAAATATATATATAT
1 ATAACATAATATTTAAATATATATATAT
69291 ATAACATAATATTTAAAT
1 ATAACATAATATTTAAAT
69309 GTAATCCGCC
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
26 16 0.37
27 1 0.02
28 26 0.60
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.40
Consensus pattern (28 bp):
ATAACATAATATTTAAATATATATATAT
Found at i:69608 original size:25 final size:26
Alignment explanation
Indices: 69563--69611 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
69553 GGGAAATTAA
69563 AAAATTATTTAAATATATTTTATATT
1 AAAATTATTTAAATATATTTTATATT
* *
69589 AAAATT-TTTAATTATTTTTTATA
1 AAAATTATTTAAATATATTTTATA
69612 AATAAATGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (26 bp):
AAAATTATTTAAATATATTTTATATT
Found at i:69618 original size:25 final size:26
Alignment explanation
Indices: 69560--69618 Score: 61
Period size: 25 Copynumber: 2.3 Consensus size: 26
69550 TTAGGGAAAT
69560 TAAA-AAATTATTTAAATATATTTTA
1 TAAATAAATTATTTAAATATATTTTA
* * *
69585 T-ATTAAAATT-TTTAATTATTTTTTA
1 TAAAT-AAATTATTTAAATATATTTTA
69610 TAAATAAAT
1 TAAATAAAT
69619 GTTTCATGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
24 1 0.04
25 19 0.70
26 7 0.26
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (26 bp):
TAAATAAATTATTTAAATATATTTTA
Found at i:73729 original size:23 final size:23
Alignment explanation
Indices: 73703--73748 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
73693 TATTCGTTAG
*
73703 TAGAACACTA-CTCGACTCGCTAA
1 TAGAACACGACCT-GACTCGCTAA
73726 TAGAACACGACCTGACTCGCTAA
1 TAGAACACGACCTGACTCGCTAA
73749 GCATTAAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 19 0.90
24 2 0.10
ACGTcount: A:0.35, C:0.30, G:0.15, T:0.20
Consensus pattern (23 bp):
TAGAACACGACCTGACTCGCTAA
Found at i:78258 original size:69 final size:69
Alignment explanation
Indices: 78154--78283 Score: 183
Period size: 69 Copynumber: 1.9 Consensus size: 69
78144 ATACATCTCA
* * *
78154 TGGCATACATCTCATAACTCCATAAATTACTCACATGCTTAGCCCATAGT-CTATATGACTAGCA
1 TGGCATACATCTCATAACTCCATAAATCACTCACATACTTAACCCATAGTGC-ATATGACTAGCA
78218 TCTAG
65 TCTAG
* *
78223 TGGCATACATTTCATAAC-CTCATAAATCATTCACATACTTAACCCATAGTGCATATGACTA
1 TGGCATACATCTCATAACTC-CATAAATCACTCACATACTTAACCCATAGTGCATATGACTA
78284 TCTCAACATA
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
68 1 0.02
69 52 0.96
70 1 0.02
ACGTcount: A:0.34, C:0.25, G:0.10, T:0.31
Consensus pattern (69 bp):
TGGCATACATCTCATAACTCCATAAATCACTCACATACTTAACCCATAGTGCATATGACTAGCAT
CTAG
Found at i:78314 original size:80 final size:80
Alignment explanation
Indices: 78223--78392 Score: 216
Period size: 80 Copynumber: 2.1 Consensus size: 80
78213 TAGCATCTAG
* * *
78223 TGGCATACATTTCATAACCTCATAAATCATTCACATACTTAACCCATAGTGCATATGACTAT-CT
1 TGGCATACATTTCATAACCTAAGAAATCATTCACATACTTAACCCATAGTGCACATGA-TATGCT
* * *
78287 CAACATATTCATCTCA
65 CAACACATACAACTCA
* * * * * *
78303 TGGCATGCATTTCATAACCTAAGAAATCATTCACATGCTTAGCCTATAGTGTACATGATATGCTT
1 TGGCATACATTTCATAACCTAAGAAATCATTCACATACTTAACCCATAGTGCACATGATATGCTC
78368 AACACATACAACTCA
66 AACACATACAACTCA
78383 TGGCATACAT
1 TGGCATACAT
78393 GTTACAATCT
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
79 3 0.04
80 73 0.96
ACGTcount: A:0.35, C:0.24, G:0.10, T:0.31
Consensus pattern (80 bp):
TGGCATACATTTCATAACCTAAGAAATCATTCACATACTTAACCCATAGTGCACATGATATGCTC
AACACATACAACTCA
Found at i:79273 original size:84 final size:84
Alignment explanation
Indices: 79123--79289 Score: 226
Period size: 84 Copynumber: 2.0 Consensus size: 84
79113 ATGATTGCAG
* * **
79123 CATGTGCACAACGCAATAACAAACTTTAGGTTGTTAATAAAATAAATAAACAATGATTAAGGAAA
1 CATGTGCACAACACAATAACAAACTTTAGATTGTTAATAAAATAAATAAACAATGATTAACAAAA
*
79188 CACAAAAATAGAATTAAAT
66 CACAAAAATAAAATTAAAT
* * * * * *
79207 CATGTGCACGACATAATAATAAACTTTAGATTTTTAATAAAGTAAATAAACAATGTTTAACAAAA
1 CATGTGCACAACACAATAACAAACTTTAGATTGTTAATAAAATAAATAAACAATGATTAACAAAA
*
79272 CACAAGAATAAAATTAAA
66 CACAAAAATAAAATTAAA
79290 AATTAAGATT
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
84 71 1.00
ACGTcount: A:0.53, C:0.11, G:0.10, T:0.26
Consensus pattern (84 bp):
CATGTGCACAACACAATAACAAACTTTAGATTGTTAATAAAATAAATAAACAATGATTAACAAAA
CACAAAAATAAAATTAAAT
Found at i:79659 original size:29 final size:29
Alignment explanation
Indices: 79572--79660 Score: 81
Period size: 29 Copynumber: 3.0 Consensus size: 29
79562 TTATTTGATT
* ** *
79572 CAAAATAAAAAATATAAAAAAATATTTAATT
1 CAAAAT-AAAAATATATAAATTTATTTAA-A
* *
79603 CAAAATAAAAATATTTGAATTTGA-TTAAA
1 CAAAATAAAAATATATAAATTT-ATTTAAA
*
79632 CATAATAAAAATATATAAATTTATTTAAA
1 CAAAATAAAAATATATAAATTTATTTAAA
79661 GTTTTGAAAT
Statistics
Matches: 47, Mismatches: 9, Indels: 6
0.76 0.15 0.10
Matches are distributed among these distances:
28 1 0.02
29 24 0.51
30 15 0.32
31 7 0.15
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (29 bp):
CAAAATAAAAATATATAAATTTATTTAAA
Found at i:82612 original size:34 final size:37
Alignment explanation
Indices: 82527--82623 Score: 94
Period size: 39 Copynumber: 2.7 Consensus size: 37
82517 AAATAAATTT
* * *
82527 AAAAATCCACTAGATCATATAAAAGGATAATGATCTTA
1 AAAAAACCATTAGATCATATAAAATGATAA-GATCTTA
* *
82565 AAAGATATCATTAGATCATATAAAATGATAA-A-C-TA
1 AAA-AAACCATTAGATCATATAAAATGATAAGATCTTA
*
82600 AAAAAACCATTAGATTA-ATAAAAT
1 AAAAAACCATTAGATCATATAAAAT
82624 AAGTATTCAT
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
33 7 0.14
34 11 0.22
35 5 0.10
36 1 0.02
37 1 0.02
38 3 0.06
39 22 0.44
ACGTcount: A:0.55, C:0.10, G:0.08, T:0.27
Consensus pattern (37 bp):
AAAAAACCATTAGATCATATAAAATGATAAGATCTTA
Found at i:87588 original size:25 final size:25
Alignment explanation
Indices: 87556--87668 Score: 102
Period size: 25 Copynumber: 4.5 Consensus size: 25
87546 CCACCTTTGG
87556 TGGTAAAATTATTCTTAGATTCTGA
1 TGGTAAAATTATTCTTAGATTCTGA
* * ** * *
87581 TGGTAAAATTATCCATCCACTTTTGG
1 TGGTAAAATTATTCTTAGA-TTCTGA
** *
87607 CAGTAAAATTATTCTTAGATTCTAA
1 TGGTAAAATTATTCTTAGATTCTGA
* *
87632 TGGTAAAATTATTATTCA-CTTCTGA
1 TGGTAAAATTATTCTT-AGATTCTGA
87657 TGGTAAAATTAT
1 TGGTAAAATTAT
87669 AATTAGAATT
Statistics
Matches: 66, Mismatches: 20, Indels: 4
0.73 0.22 0.04
Matches are distributed among these distances:
25 48 0.73
26 18 0.27
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.42
Consensus pattern (25 bp):
TGGTAAAATTATTCTTAGATTCTGA
Found at i:87643 original size:51 final size:51
Alignment explanation
Indices: 87506--87643 Score: 186
Period size: 51 Copynumber: 2.7 Consensus size: 51
87496 TGGTGGCAAA
* * * ** * *
87506 AGTAAAATTATCCTTATATTTTGATAATAAAATTACCCATCCACCTTTGGT
1 AGTAAAATTATTCTTAGATTCTGATGGTAAAATTATCCATCCACCTTTGGC
* *
87557 GGTAAAATTATTCTTAGATTCTGATGGTAAAATTATCCATCCACTTTTGGC
1 AGTAAAATTATTCTTAGATTCTGATGGTAAAATTATCCATCCACCTTTGGC
*
87608 AGTAAAATTATTCTTAGATTCTAATGGTAAAATTAT
1 AGTAAAATTATTCTTAGATTCTGATGGTAAAATTAT
87644 TATTCACTTC
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 76 1.00
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.40
Consensus pattern (51 bp):
AGTAAAATTATTCTTAGATTCTGATGGTAAAATTATCCATCCACCTTTGGC
Found at i:88312 original size:19 final size:19
Alignment explanation
Indices: 88284--88321 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
88274 GAAGTATAAG
88284 AGAAAATATTTAAAGGGAA
1 AGAAAATATTTAAAGGGAA
* *
88303 AGAAAGTATTTAGAGGGAA
1 AGAAAATATTTAAAGGGAA
88322 TAAGAAGACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.26, T:0.21
Consensus pattern (19 bp):
AGAAAATATTTAAAGGGAA
Found at i:89061 original size:2 final size:2
Alignment explanation
Indices: 89054--89097 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
89044 TCATGGGAAC
89054 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
89096 AT
1 AT
89098 TAAAGTTCCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:92492 original size:7 final size:7
Alignment explanation
Indices: 92477--92507 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
92467 GTGTGGATCC
*
92477 AATTTAA
1 AATTGAA
92484 AATTGAA
1 AATTGAA
92491 AATTGAA
1 AATTGAA
92498 AATTGAA
1 AATTGAA
92505 AAT
1 AAT
92508 AATGGTGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.58, C:0.00, G:0.10, T:0.32
Consensus pattern (7 bp):
AATTGAA
Found at i:102081 original size:89 final size:90
Alignment explanation
Indices: 101984--102158 Score: 217
Period size: 90 Copynumber: 2.0 Consensus size: 90
101974 CAAGCTTTGA
* * ** ** *
101984 TATTATTTTATTTTGATCATCTTCAAGGTTCAAAA-GATTTCAATGGTTGGTCTTTAATTTCTAG
1 TATTATTTTATTGTCATCATCCCCAAACTTCAAAAGGATTTCAATGGTTAGTCTTTAATTTCTAG
*
102048 TTTTAGCAAATCAGATAAGTGTTGG
66 TTTTAGAAAATCAGATAAGTGTTGG
* * * * *
102073 TATTATTTTGTTGTCATCCTCCCCAAACTTCAAAAGGATTTTAATGGTTAGTCTTTGATTTCTTG
1 TATTATTTTATTGTCATCATCCCCAAACTTCAAAAGGATTTCAATGGTTAGTCTTTAATTTCTAG
*
102138 TTTTAGAAAATCAGGTAAGTG
66 TTTTAGAAAATCAGATAAGTG
102159 ACTTGATATA
Statistics
Matches: 71, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
89 27 0.38
90 44 0.62
ACGTcount: A:0.27, C:0.12, G:0.17, T:0.44
Consensus pattern (90 bp):
TATTATTTTATTGTCATCATCCCCAAACTTCAAAAGGATTTCAATGGTTAGTCTTTAATTTCTAG
TTTTAGAAAATCAGATAAGTGTTGG
Found at i:102524 original size:18 final size:19
Alignment explanation
Indices: 102467--102525 Score: 52
Period size: 18 Copynumber: 3.2 Consensus size: 19
102457 GTGGATGAAT
*
102467 AATG-AAAGAGATATAAGAA
1 AATGAAAAGAAATAT-AGAA
* **
102486 AATGATAA-AAATATACTA
1 AATGAAAAGAAATATAGAA
102504 AAT-AAAAGAAATATAGAA
1 AATGAAAAGAAATATAGAA
102522 AATG
1 AATG
102526 TCTTGTCATT
Statistics
Matches: 30, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
17 3 0.10
18 16 0.53
19 9 0.30
20 2 0.07
ACGTcount: A:0.64, C:0.02, G:0.14, T:0.20
Consensus pattern (19 bp):
AATGAAAAGAAATATAGAA
Found at i:104521 original size:30 final size:30
Alignment explanation
Indices: 104487--104551 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
104477 TAATCAAGCC
*
104487 CTTATAGTTTTATTTTGAGCCAAATAAGT-T
1 CTTATACTTTTATTTTGAGCCAAATAA-TCT
104517 CTTATACTTTTATTTTGAGCCAAATAATCT
1 CTTATACTTTTATTTTGAGCCAAATAATCT
104547 CTTAT
1 CTTAT
104552 GACTAGTGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
29 1 0.03
30 32 0.97
ACGTcount: A:0.29, C:0.14, G:0.09, T:0.48
Consensus pattern (30 bp):
CTTATACTTTTATTTTGAGCCAAATAATCT
Found at i:104661 original size:33 final size:33
Alignment explanation
Indices: 104619--104683 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
104609 ATATATTAAT
*
104619 ATATCATAATTGATAATAATGTGAAATACTAAC
1 ATATCATAATTGATAATAACGTGAAATACTAAC
* * *
104652 ATATCATAATTGATTATGACGTGACATACTAA
1 ATATCATAATTGATAATAACGTGAAATACTAA
104684 TTTAATATAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.34
Consensus pattern (33 bp):
ATATCATAATTGATAATAACGTGAAATACTAAC
Found at i:108324 original size:251 final size:246
Alignment explanation
Indices: 107826--108538 Score: 621
Period size: 251 Copynumber: 2.9 Consensus size: 246
107816 GAGTCAATTA
* *
107826 AAAAAAATCTAATTTTAGTGAAAAAAATATTTAAATTTATATTTTCAGGCTAAAAGTGGTTAATG
1 AAAAAAATCTAATTTTAGTGAAAAAAATATTTAAATTTATATTTTCAGACTAAAAGTGGTTAACG
* * *
107891 ATATGTAAATTGTAATTTTTAAATAAAGAATAAAAATGAAAAAATTTATAGTTCAATATTGACAT
66 ATATATAAATTGTAATTTTTAAATAAAGAATAAAAATGAAAAAATTTATAGTTCAAAATGGACAT
* * * * * * *
107956 AGATAAGCCTTAAAGTAAAATTATAAAAATTGATATAAAAACTTATAAAGGTGAAATAACTCAAT
131 AAAAAAACCTTAAAGTAAAATTATAAAAATTGACATAAAAACTTATAAAGATAAAATAACTAAAT
* * *
108021 TTTAAATCTTAACTTAAACATGTGAAAGTTAATATAATAAATCAATTAAGT
196 TTTAAATCTTAACATAAACATGTGAAAGTTAACATAATAAATCAAATAAGT
*
108072 AAAAAAATCTAATTTTAGTGAAAAGTAAATATTTAAATTTATATTTTCAGACTAAAAGTGTTTAA
1 AAAAAAATCTAATTTTAGTGAAAA--AAATATTTAAATTTATATTTTCAGACTAAAAGTGGTTAA
* * ******* *
108137 CGATATATGAATTTTAATTTTTAAATAAAGAATNNNNNNNNNNAAAATAA-TTATAGTTTAAAAT
64 CGATATATAAATTGTAATTTTTAAATAAAGAAT---AAAAATGAAAA-AATTTATAGTTCAAAAT
* * * * *
108201 GGACATAAAAAAATCTTGACA-TAAAATTATAAGAATTGACGTAAAAACTTATACAGATAAAATA
125 GGACATAAAAAAACCTT-AAAGTAAAATTATAAAAATTGACATAAAAACTTATAAAGATAAAATA
* * * * *
108265 ATTAAATTTTAAATCTTAACATAAATATGTGAGAGTTAACATAGTAAGTCAAATAAGT
189 ACTAAATTTTAAATCTTAACATAAACATGTGAAAGTTAACATAATAAATCAAATAAGT
*********** * * * * **
108323 AAAAAAANNNNNNNNNNTTGAAAAATAAATATTTAAATTTATATTCAT-AAAATAAAAATATTTA
1 AAAAAAATCTAATTTTAGTG-AAAA-AAATATTTAAATTTATATT-TTCAGACTAAAAGTGGTTA
* * * * *
108387 ACGATATATAAATTTTAATTTTCAAATAAA-AATAATAAA-GATAAAACTAATTATAATTTAAAA
63 ACGATATATAAATTGTAATTTTTAAATAAAGAATAA-AAATGA-AAAA--ATTTATAGTTCAAAA
* * * * * * * * * *
108450 TTGATATAAATAAGCCTTGACGTAAAACTGTAAGAATTGACGTAAAAACTTATAAA-AGT-AAAT
124 TGGACATAAAAAAACCTTAAAGTAAAATTATAAAAATTGACATAAAAACTTATAAAGA-TAAAAT
*
108513 AACTAAATTTTAAATCTTAACGTAAA
188 AACTAAATTTTAAATCTTAACATAAA
108539 NNNNNNNNNN
Statistics
Matches: 377, Mismatches: 74, Indels: 29
0.79 0.15 0.06
Matches are distributed among these distances:
246 24 0.06
247 2 0.01
248 69 0.18
249 30 0.08
250 60 0.16
251 183 0.49
252 9 0.02
ACGTcount: A:0.50, C:0.06, G:0.09, T:0.33
Consensus pattern (246 bp):
AAAAAAATCTAATTTTAGTGAAAAAAATATTTAAATTTATATTTTCAGACTAAAAGTGGTTAACG
ATATATAAATTGTAATTTTTAAATAAAGAATAAAAATGAAAAAATTTATAGTTCAAAATGGACAT
AAAAAAACCTTAAAGTAAAATTATAAAAATTGACATAAAAACTTATAAAGATAAAATAACTAAAT
TTTAAATCTTAACATAAACATGTGAAAGTTAACATAATAAATCAAATAAGT
Found at i:109188 original size:47 final size:47
Alignment explanation
Indices: 109134--109745 Score: 547
Period size: 47 Copynumber: 13.2 Consensus size: 47
109124 TGTGATAGGG
* * * * * *
109134 CTGTGACATGGCAGGGTTCAAAGTTTGTCACACGCCATGAAGGGAAT
1 CTGTGACACGACAGAGTTCAGAGTTTGTGACACGCCATGGAGGGAAT
*** * *
109181 CTGTGACACTTTAGAGTTCAAAGTTTGTGACACGGCATGGAGGGAAT
1 CTGTGACACGACAGAGTTCAGAGTTTGTGACACGCCATGGAGGGAAT
* * *
109228 CTATGACACGCCAGAGTTTAGAG-TT-TGACACGGCC-TGGAGGGAAT
1 CTGTGACACGACAGAGTTCAGAGTTTGTGACAC-GCCATGGAGGGAAT
* *** *
109273 CTATGACACTTTACAGTTCAGAGTTTGTGACACGCCATGGAGGGAAT
1 CTGTGACACGACAGAGTTCAGAGTTTGTGACACGCCATGGAGGGAAT
* *
109320 CTGTGACACGCCAGAGTTCAGAG-TT-TGACACAG-CATGGAGGAAAT
1 CTGTGACACGACAGAGTTCAGAGTTTGTGACAC-GCCATGGAGGGAAT
* * * * * * * *
109365 CTGTGACATGTCAGTGTTTAGAGTTTGTAACATGGCATGGATGGAAT
1 CTGTGACACGACAGAGTTCAGAGTTTGTGACACGCCATGGAGGGAAT
* ***
109412 CTGTGACACG-CTAGAGTTTAGAG-TT-TGACATAACATGGAGGGAAT
1 CTGTGACACGAC-AGAGTTCAGAGTTTGTGACACGCCATGGAGGGAAT
* *
109457 CTATGACACGACAGTA-TTCAGAGTTTGTGACACACCATGGAGGGAAT
1 CTGTGACACGACAG-AGTTCAGAGTTTGTGACACGCCATGGAGGGAAT
* ** * * * * *
109504 CTGTGACAAGGTAGGGTTTAGGGTTTGTGACACGCTATGTAGGGAAT
1 CTGTGACACGACAGAGTTCAGAGTTTGTGACACGCCATGGAGGGAAT
* * * *
109551 TTGTGACAC-TCTAGTGTTCAGAGTTTGTGACA-GGCATGGAGGGAAT
1 CTGTGACACGAC-AGAGTTCAGAGTTTGTGACACGCCATGGAGGGAAT
** * *
109597 CTGTGACACCCCAAAGTTTAGAG-TT-TGACACTG-CATGGAGGGAAT
1 CTGTGACACGACAGAGTTCAGAGTTTGTGACAC-GCCATGGAGGGAAT
*
109642 CTGTGACACGATAGTA-TTCAGAGTTTGTGACACGCCATGGAGGGAAT
1 CTGTGACACGACAG-AGTTCAGAGTTTGTGACACGCCATGGAGGGAAT
* *
109689 CTGTGACACGACA-AGGTTCAGGGTTTGTGACACGCCATGGAGAGAAT
1 CTGTGACACGACAGA-GTTCAGAGTTTGTGACACGCCATGGAGGGAAT
109736 CTGTGACACG
1 CTGTGACACG
109746 TCAAGGTTTA
Statistics
Matches: 464, Mismatches: 77, Indels: 48
0.79 0.13 0.08
Matches are distributed among these distances:
44 5 0.01
45 134 0.29
46 54 0.12
47 271 0.58
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.26
Consensus pattern (47 bp):
CTGTGACACGACAGAGTTCAGAGTTTGTGACACGCCATGGAGGGAAT
Found at i:109320 original size:92 final size:92
Alignment explanation
Indices: 109155--109744 Score: 595
Period size: 92 Copynumber: 6.4 Consensus size: 92
109145 CAGGGTTCAA
* * * * *
109155 AGTTTGTCACACGCCATGAAGGGAATCTGTGACACTTTAGAGTTCAAAGTTTGTGACACGGCATG
1 AGTTTGACACA-G-CATGGAGGGAATCTGTGACACTTTACAGTTCAGAGTTTGTGACACGCCATG
*
109220 GAGGGAATCTATGACACGCCAGAGTTTAG
64 GAGGGAATCTGTGACACGCCAGAGTTTAG
* * *
109249 AGTTTGACACGGCCTGGAGGGAATCTATGACACTTTACAGTTCAGAGTTTGTGACACGCCATGGA
1 AGTTTGACACAGCATGGAGGGAATCTGTGACACTTTACAGTTCAGAGTTTGTGACACGCCATGGA
*
109314 GGGAATCTGTGACACGCCAGAGTTCAG
66 GGGAATCTGTGACACGCCAGAGTTTAG
* * * * * *
109341 AGTTTGACACAGCATGGAGGAAATCTGTGACA-TGT-CAGTGTTTAGAGTTTGTAACATGGCATG
1 AGTTTGACACAGCATGGAGGGAATCTGTGACACTTTACA--GTTCAGAGTTTGTGACACGCCATG
* *
109404 GATGGAATCTGTGACACGCTAGAGTTTAG
64 GAGGGAATCTGTGACACGCCAGAGTTTAG
* * * * *
109433 AGTTTGACATAACATGGAGGGAATCTATGACAC--GACAGTATTCAGAGTTTGTGACACACCATG
1 AGTTTGACACAGCATGGAGGGAATCTGTGACACTTTACAG--TTCAGAGTTTGTGACACGCCATG
* ** *
109496 GAGGGAATCTGTGACAAGGTAGGGTTTAG
64 GAGGGAATCTGTGACACGCCAGAGTTTAG
* * * * ** *
109525 GGTTTGTGACAC-GCTATGTAGGGAATTTGTGACACTCTAGTGTTCAGAGTTTGTGACA-GGCAT
1 AG-TT-TGACACAGC-ATGGAGGGAATCTGTGACACTTTACAGTTCAGAGTTTGTGACACGCCAT
* *
109588 GGAGGGAATCTGTGACACCCCAAAGTTTAG
63 GGAGGGAATCTGTGACACGCCAGAGTTTAG
* ** *
109618 AGTTTGACACTGCATGGAGGGAATCTGTGACACGATAGTA-TTCAGAGTTTGTGACACGCCATGG
1 AGTTTGACACAGCATGGAGGGAATCTGTGACACTTTA-CAGTTCAGAGTTTGTGACACGCCATGG
* *
109682 AGGGAATCTGTGACACGACA-AGGTTCAG
65 AGGGAATCTGTGACACGCCAGA-GTTTAG
* *
109710 GGTTTGTGACAC-GCCATGGAGAGAATCTGTGACAC
1 AG-TT-TGACACAG-CATGGAGGGAATCTGTGACAC
109745 GTCAAGGTTT
Statistics
Matches: 412, Mismatches: 66, Indels: 36
0.80 0.13 0.07
Matches are distributed among these distances:
90 3 0.01
91 45 0.11
92 254 0.62
93 35 0.08
94 73 0.18
96 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (92 bp):
AGTTTGACACAGCATGGAGGGAATCTGTGACACTTTACAGTTCAGAGTTTGTGACACGCCATGGA
GGGAATCTGTGACACGCCAGAGTTTAG
Found at i:109411 original size:139 final size:140
Alignment explanation
Indices: 109149--109745 Score: 617
Period size: 139 Copynumber: 4.3 Consensus size: 140
109139 ACATGGCAGG
* * * *** *
109149 GTTCAAAGTTTGTCACACGCCATGAAGGGAATCTGTGACACTTTAGAGTTCAAAGTTTGTGACAC
1 GTTCAGAGTTTGTGACACGCCATGGAGGGAATCTGTGACACGCCAGAGTTCAGAGTTTGTGACAC
* * * * * *
109214 GGCATGGAGGGAATCTATGACACGCCAGAGTTTAGAG-TT-TGACACGGCCTGGAGGGAATCTAT
66 AGCATGGAGGGAATCTGTGACACG-TAGTGTTTAGAGTTTGTGACACGGCATGGAGGGAATCTGT
*
109277 GACACTTTACA
130 GACACTCTACA
109288 GTTCAGAGTTTGTGACACGCCATGGAGGGAATCTGTGACACGCCAGAGTTCAGAG-TT-TGACAC
1 GTTCAGAGTTTGTGACACGCCATGGAGGGAATCTGTGACACGCCAGAGTTCAGAGTTTGTGACAC
* * * * *
109351 AGCATGGAGGAAATCTGTGACATGTCAGTGTTTAGAGTTTGTAACATGGCATGGATGGAATCTGT
66 AGCATGGAGGGAATCTGTGACACGT-AGTGTTTAGAGTTTGTGACACGGCATGGAGGGAATCTGT
* *
109416 GACACGCTAGA
130 GACACTCTACA
* *** * *
109427 GTTTAGAG-TT-TGACATAACATGGAGGGAATCTATGACACGACAGTA-TTCAGAGTTTGTGACA
1 GTTCAGAGTTTGTGACACGCCATGGAGGGAATCTGTGACACGCCAG-AGTTCAGAGTTTGTGACA
* * * * * *
109489 CACCATGGAGGGAATCTGTGACAAGGTAGGGTTTAGGGTTTGTGACAC-GCTATGTAGGGAATTT
65 CAGCATGGAGGGAATCTGTGAC-ACGTAGTGTTTAGAGTTTGTGACACGGC-ATGGAGGGAATCT
**
109553 GTGACACTCTAGT
128 GTGACACTCTACA
* * * *
109566 GTTCAGAGTTTGTGACA-GGCATGGAGGGAATCTGTGACACCCCAAAGTTTAGAG-TT-TGACAC
1 GTTCAGAGTTTGTGACACGCCATGGAGGGAATCTGTGACACGCCAGAGTTCAGAGTTTGTGACAC
* * * *
109628 TGCATGGAGGGAATCTGTGACACGATAGTATTCAGAGTTTGTGACACGCCATGGAGGGAATCTGT
66 AGCATGGAGGGAATCTGTGACACG-TAGTGTTTAGAGTTTGTGACACGGCATGGAGGGAATCTGT
*
109693 GACA--CGACAA
130 GACACTCTAC-A
* *
109703 GGTTCAGGGTTTGTGACACGCCATGGAGAGAATCTGTGACACG
1 -GTTCAGAGTTTGTGACACGCCATGGAGGGAATCTGTGACACG
109746 TCAAGGTTTA
Statistics
Matches: 378, Mismatches: 64, Indels: 32
0.80 0.14 0.07
Matches are distributed among these distances:
136 2 0.01
137 74 0.20
138 87 0.23
139 177 0.47
140 33 0.09
141 5 0.01
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (140 bp):
GTTCAGAGTTTGTGACACGCCATGGAGGGAATCTGTGACACGCCAGAGTTCAGAGTTTGTGACAC
AGCATGGAGGGAATCTGTGACACGTAGTGTTTAGAGTTTGTGACACGGCATGGAGGGAATCTGTG
ACACTCTACA
Found at i:109556 original size:23 final size:23
Alignment explanation
Indices: 109527--109605 Score: 70
Period size: 24 Copynumber: 3.4 Consensus size: 23
109517 GGGTTTAGGG
109527 TTTGTGACACGCTATGTAGGGAA
1 TTTGTGACACGCTATGTAGGGAA
* *** *
109550 TTTGTGACACTCTAGTGTTCAGAG
1 TTTGTGACACGCTA-TGTAGGGAA
* *
109574 TTTGTGACAGGC-ATGGAGGGAA
1 TTTGTGACACGCTATGTAGGGAA
*
109596 TCTGTGACAC
1 TTTGTGACAC
109606 CCCAAAGTTT
Statistics
Matches: 41, Mismatches: 14, Indels: 3
0.71 0.24 0.05
Matches are distributed among these distances:
22 12 0.29
23 14 0.34
24 15 0.37
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.30
Consensus pattern (23 bp):
TTTGTGACACGCTATGTAGGGAA
Found at i:109697 original size:23 final size:23
Alignment explanation
Indices: 109667--109745 Score: 81
Period size: 23 Copynumber: 3.4 Consensus size: 23
109657 ATTCAGAGTT
109667 TGTGACACGCCATGGAGGGAATC
1 TGTGACACGCCATGGAGGGAATC
* * *
109690 TGTGACACGACAAGGTTCAGGG--TT
1 TGTGACACGCCATGG---AGGGAATC
*
109714 TGTGACACGCCATGGAGAGAATC
1 TGTGACACGCCATGGAGGGAATC
109737 TGTGACACG
1 TGTGACACG
109746 TCAAGGTTTA
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
21 3 0.07
23 23 0.52
24 14 0.32
26 4 0.09
ACGTcount: A:0.27, C:0.20, G:0.33, T:0.20
Consensus pattern (23 bp):
TGTGACACGCCATGGAGGGAATC
Found at i:109789 original size:185 final size:182
Alignment explanation
Indices: 109215--109789 Score: 607
Period size: 185 Copynumber: 3.1 Consensus size: 182
109205 TTGTGACACG
* * *
109215 GCATGGAGGGAATCTATGACACGCCAGAGTTTAGAGTTTGACACGGCCTGGAGGGAATCTATGAC
1 GCATGGAGGG--TCTGTGACACGCCAGAGTTTAGAGTTTGACACTGCATGGAGGGAATCTATGAC
** * * *
109280 ACTTTA-CAGTTCAGAGTTTGTGACACGCCATGGAGGGAATCTGTGACACGCCAGAGTTCAGAG-
64 ACGATAGTA-TTCAGAGTTTGTGACACGCCATGGAGGGAATCTGTGACACGCAAG-GTTCAGGGT
*
109343 TT-TGACACAG-CATGGAGGAAATCTGTGACATGTCAGTGTTTAGAGTTTGTAACATG--
127 TTGTGACAC-GCCATGGAGG-AATCTGTGACACGTCAGTGTTTAGAG-TT-TAACATGCA
* * *
109399 GCATGGATGGAATCTGTGACACGCTAGAGTTTAGAGTTTGACA-TAACATGGAGGGAATCTATGA
1 GCATGGA-GG-GTCTGTGACACGCCAGAGTTTAGAGTTTGACACT-GCATGGAGGGAATCTATGA
* * * * * *
109463 CACGACAGTATTCAGAGTTTGTGACACACCATGGAGGGAATCTGTGACAAGGTAGGGTTTAGGGT
63 CACGATAGTATTCAGAGTTTGTGACACGCCATGGAGGGAATCTGTGAC-ACGCAAGGTTCAGGGT
* * * * *
109528 TTGTGACACGCTATGTAGGGAATTTGTGACAC-TCTAGTGTTCAGAGTTT---GTGACA
127 TTGTGACACGCCATGGA-GGAATCTGTGACACGTC-AGTGTTTAGAGTTTAACATG-CA
* * *
109583 GGCATGGAGGGAATCTGTGACACCCCAAAGTTTAGAGTTTGACACTGCATGGAGGGAATCTGTGA
1 -GCATGGAGGG--TCTGTGACACGCCAGAGTTTAGAGTTTGACACTGCATGGAGGGAATCTATGA
109648 CACGATAGTATTCAGAGTTTGTGACACGCCATGGAGGGAATCTGTGACACGACAAGGTTCAGGGT
63 CACGATAGTATTCAGAGTTTGTGACACGCCATGGAGGGAATCTGTGACACG-CAAGGTTCAGGGT
109713 TTGTGACACGCCATGGAGAGAATCTGTGACACGTCAAG-GTTTAGAGTTTAACATGTCA
127 TTGTGACACGCCATGGAG-GAATCTGTGACACGTC-AGTGTTTAGAGTTTAACATG-CA
** *
109771 GCATTCAGGGTTTGTGACA
1 GCATGGAGGGTCTGTGACA
109790 AGCAACGTTC
Statistics
Matches: 323, Mismatches: 45, Indels: 45
0.78 0.11 0.11
Matches are distributed among these distances:
181 2 0.01
184 106 0.33
185 166 0.51
186 35 0.11
187 10 0.03
188 4 0.01
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (182 bp):
GCATGGAGGGTCTGTGACACGCCAGAGTTTAGAGTTTGACACTGCATGGAGGGAATCTATGACAC
GATAGTATTCAGAGTTTGTGACACGCCATGGAGGGAATCTGTGACACGCAAGGTTCAGGGTTTGT
GACACGCCATGGAGGAATCTGTGACACGTCAGTGTTTAGAGTTTAACATGCA
Found at i:109808 original size:138 final size:137
Alignment explanation
Indices: 109288--109844 Score: 384
Period size: 139 Copynumber: 4.0 Consensus size: 137
109278 ACACTTTACA
* * * * *
109288 GTTCAGAGTTTGTGACACGCCATGGAGGGAATCTGTGACACGCCAGAGTTCAGAGTTTGACACAG
1 GTTCAGAGTTTGTGACA-GCCATGGAGAGAATCTGTGACACCCCAAAGTTTAGAGTTTAACACAG
* * * * * * * * * *
109353 CATGGAGGAAATCTGTGACATG-TCAGTGTTTAGAGTTTGTAACATGGCATGGATGGAATCTGTG
65 CATGCAGG-GATCTGTGACAAGAT-AG-ATTCAGAGGTTGTGACACGCCATGGAGGGAATCTGTG
* *
109417 ACACG-CTAGA
127 ACACGACAAGT
* ** * * * * *
109427 GTTTAGAG-TT-TGACATAACATGGAGGGAATCTATGACA--CGACAGTATTCAGAGTTTGTGAC
1 GTTCAGAGTTTGTGACA-GCCATGGAGAGAATCTGTGACACCCCAAAGT-TT-AGAG-TT-TAAC
* * * * * * * *
109488 ACACCATGGAGGGAATCTGTGACAAGGTAGGGTTTAG-GGTTTGTGACACGCTATGTAGGGAATT
61 ACAGCATGCAGGG-ATCTGTGACAAGATA-GATTCAGAGG-TTGTGACACGCCATGGAGGGAATC
* *
109552 TGTGACAC-TCTAGT
123 TGTGACACGACAAGT
* * * *
109566 GTTCAGAGTTTGTGACAGGCATGGAGGGAATCTGTGACACCCCAAAGTTTAGAGTTTGACACTGC
1 GTTCAGAGTTTGTGACAGCCATGGAGAGAATCTGTGACACCCCAAAGTTTAGAGTTTAACACAGC
* * *
109631 ATGGAGGGAATCTGTGACACGATAGTATTCAGAGTTTGTGACACGCCATGGAGGGAATCTGTGAC
66 ATGCAGGG-ATCTGTGACAAGATAG-ATTCAGAGGTTGTGACACGCCATGGAGGGAATCTGTGAC
109696 ACGACAAG-
129 ACGACAAGT
* ** *
109704 GTTCAGGGTTTGTGACACGCCATGGAGAGAATCTGTGACACGTCAAGGTTTAGAGTTTAACATGT
1 GTTCAGAGTTTGTGACA-GCCATGGAGAGAATCTGTGACACCCCAAAGTTTAGAGTTTAACA---
* * * *
109769 CAGCATTCAGGG-TTTGTGACAAGCA-ACG-TTCA-AGGTTGTGACACGCCATTGAGAGAATCTG
62 CAGCATGCAGGGATCTGTGACAAG-ATA-GATTCAGAGGTTGTGACACGCCATGGAGGGAATCTG
*
109830 TGACACGCCAAGT
125 TGACACGACAAGT
109843 GT
1 GT
109845 GTGTCAGATG
Statistics
Matches: 341, Mismatches: 54, Indels: 46
0.77 0.12 0.10
Matches are distributed among these distances:
135 5 0.01
136 1 0.00
137 29 0.09
138 120 0.35
139 126 0.37
140 37 0.11
141 9 0.03
142 14 0.04
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.26
Consensus pattern (137 bp):
GTTCAGAGTTTGTGACAGCCATGGAGAGAATCTGTGACACCCCAAAGTTTAGAGTTTAACACAGC
ATGCAGGGATCTGTGACAAGATAGATTCAGAGGTTGTGACACGCCATGGAGGGAATCTGTGACAC
GACAAGT
Found at i:110563 original size:31 final size:31
Alignment explanation
Indices: 110525--110944 Score: 455
Period size: 31 Copynumber: 13.6 Consensus size: 31
110515 ACGAAATGGT
* * *
110525 TGGCGTGTTACAACATTTGACTTGTTATGCA
1 TGGCGTGTGACCACATTTTACTTGTTATGCA
* * *
110556 TGGCGTGTGACGACCTTTTACTCGTTATGCA
1 TGGCGTGTGACCACATTTTACTTGTTATGCA
*
110587 TGGCGTGTGACCACATTTGACTTGTTATGCA
1 TGGCGTGTGACCACATTTTACTTGTTATGCA
*
110618 TGGCTTGTGACCACATTTTACTTGTTATGCA
1 TGGCGTGTGACCACATTTTACTTGTTATGCA
* ** *
110649 TGGCATGTGATGACCTTTTACTTGTTATGCA
1 TGGCGTGTGACCACATTTTACTTGTTATGCA
*
110680 TGGTGTGTGACCACATTTTACTTGTTATGCA
1 TGGCGTGTGACCACATTTTACTTGTTATGCA
* * * *
110711 T-GCATGTCACGACCTTTTACTTGTTATGCA
1 TGGCGTGTGACCACATTTTACTTGTTATGCA
* * * **
110741 TGGCGTGTGACGACCTTTTAGTCATTATGCA
1 TGGCGTGTGACCACATTTTACTTGTTATGCA
*
110772 TAGCGTGTGACCACATTTTACTTGTTATGCA
1 TGGCGTGTGACCACATTTTACTTGTTATGCA
* * * * *
110803 CGACATGTGACAACATTTTACTTATTATGCA
1 TGGCGTGTGACCACATTTTACTTGTTATGCA
* ** * **
110834 TGGCATGTGATGACCTTTTACTCATTATGCA
1 TGGCGTGTGACCACATTTTACTTGTTATGCA
* * *
110865 TGGTGTGTGACCACCTTTTACTGGTTATGCA
1 TGGCGTGTGACCACATTTTACTTGTTATGCA
* * *
110896 TGGCGTTTGACCACATTTTACCTGTTATGAA
1 TGGCGTGTGACCACATTTTACTTGTTATGCA
* *
110927 TGACGTGTAACCACATTT
1 TGGCGTGTGACCACATTT
110945 GTGTCATATT
Statistics
Matches: 325, Mismatches: 63, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
30 25 0.08
31 300 0.92
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.38
Consensus pattern (31 bp):
TGGCGTGTGACCACATTTTACTTGTTATGCA
Found at i:110696 original size:93 final size:93
Alignment explanation
Indices: 110537--110924 Score: 535
Period size: 93 Copynumber: 4.2 Consensus size: 93
110527 GCGTGTTACA
* * *
110537 ACATTTGACTTGTTATGCATGGCGTGTGACGACCTTTTACTCGTTATGCATGGCGTGTGACCACA
1 ACATTTTACTTGTTATGCATGGCATGTGACGACCTTTTACTCATTATGCATGGCGTGTGACCACA
* *
110602 TTTGACTTGTTATGCATGGCTTGTGACC
66 TTTTACTTGTTATGCATGGCATGTGACC
* ** *
110630 ACATTTTACTTGTTATGCATGGCATGTGATGACCTTTTACTTGTTATGCATGGTGTGTGACCACA
1 ACATTTTACTTGTTATGCATGGCATGTGACGACCTTTTACTCATTATGCATGGCGTGTGACCACA
* *
110695 TTTTACTTGTTATGCAT-GCATGTCACG
66 TTTTACTTGTTATGCATGGCATGTGACC
* * * *
110722 ACCTTTTACTTGTTATGCATGGCGTGTGACGACCTTTTAGTCATTATGCATAGCGTGTGACCACA
1 ACATTTTACTTGTTATGCATGGCATGTGACGACCTTTTACTCATTATGCATGGCGTGTGACCACA
* * *
110787 TTTTACTTGTTATGCACGACATGTGACA
66 TTTTACTTGTTATGCATGGCATGTGACC
* * * *
110815 ACATTTTACTTATTATGCATGGCATGTGATGACCTTTTACTCATTATGCATGGTGTGTGACCACC
1 ACATTTTACTTGTTATGCATGGCATGTGACGACCTTTTACTCATTATGCATGGCGTGTGACCACA
* * *
110880 TTTTACTGGTTATGCATGGCGTTTGACC
66 TTTTACTTGTTATGCATGGCATGTGACC
*
110908 ACATTTTACCTGTTATG
1 ACATTTTACTTGTTATG
110925 AATGACGTGT
Statistics
Matches: 257, Mismatches: 37, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
92 80 0.31
93 177 0.69
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39
Consensus pattern (93 bp):
ACATTTTACTTGTTATGCATGGCATGTGACGACCTTTTACTCATTATGCATGGCGTGTGACCACA
TTTTACTTGTTATGCATGGCATGTGACC
Found at i:110864 original size:185 final size:185
Alignment explanation
Indices: 110544--110897 Score: 591
Period size: 185 Copynumber: 1.9 Consensus size: 185
110534 ACAACATTTG
* *
110544 ACTTGTTATGCATGGCGTGTGACGACCTTTTACTCGTTATGCATGGCGTGTGACCACATTTGACT
1 ACTTGTTATGCATGGCGTGTGACGACCTTTTACTCATTATGCATAGCGTGTGACCACATTTGACT
* * * * * **
110609 TGTTATGCATGGCTTGTGACCACATTTTACTTGTTATGCATGGCATGTGATGACCTTTTACTTGT
66 TGTTATGCACGACATGTGACAACATTTTACTTATTATGCATGGCATGTGATGACCTTTTACTCAT
*
110674 TATGCATGGTGTGTGACCACATTTTACTTGTTATGCATGCATGTCACGACCTTTT
131 TATGCATGGTGTGTGACCACATTTTACTGGTTATGCATGCATGTCACGACCTTTT
* *
110729 ACTTGTTATGCATGGCGTGTGACGACCTTTTAGTCATTATGCATAGCGTGTGACCACATTTTACT
1 ACTTGTTATGCATGGCGTGTGACGACCTTTTACTCATTATGCATAGCGTGTGACCACATTTGACT
110794 TGTTATGCACGACATGTGACAACATTTTACTTATTATGCATGGCATGTGATGACCTTTTACTCAT
66 TGTTATGCACGACATGTGACAACATTTTACTTATTATGCATGGCATGTGATGACCTTTTACTCAT
*
110859 TATGCATGGTGTGTGACCACCTTTTACTGGTTATGCATG
131 TATGCATGGTGTGTGACCACATTTTACTGGTTATGCATG
110898 GCGTTTGACC
Statistics
Matches: 156, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
185 156 1.00
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39
Consensus pattern (185 bp):
ACTTGTTATGCATGGCGTGTGACGACCTTTTACTCATTATGCATAGCGTGTGACCACATTTGACT
TGTTATGCACGACATGTGACAACATTTTACTTATTATGCATGGCATGTGATGACCTTTTACTCAT
TATGCATGGTGTGTGACCACATTTTACTGGTTATGCATGCATGTCACGACCTTTT
Found at i:114229 original size:22 final size:22
Alignment explanation
Indices: 114201--114243 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
114191 ACTACAACCA
114201 CATGGCGTGTCACCGCATTGGG
1 CATGGCGTGTCACCGCATTGGG
114223 CATGGCGTGTCACCGCATTGG
1 CATGGCGTGTCACCGCATTGG
114244 NNNNNNNNNN
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.14, C:0.28, G:0.35, T:0.23
Consensus pattern (22 bp):
CATGGCGTGTCACCGCATTGGG
Found at i:114794 original size:250 final size:253
Alignment explanation
Indices: 114344--114796 Score: 689
Period size: 250 Copynumber: 1.8 Consensus size: 253
114334 NNNNNNNNNN
* *
114344 TTATTTTTATTATTATTATTGTTTATTTAAAAATTAAAATTTATATATCGTTAATCACATTTAGT
1 TTATTTTTATTATTATTATTGTTTATTTAAAAAATAAAATTTATATATCGTTAAGCACATTTAGT
*
114409 AGAAGAATATATATTTAAATATTTATTTGTCACTAAAATTAGAAGTTTTTTTACTCAATTGACTT
66 AGAAGAATATATATTTAAATATTTATTTGTCACTAAAATTAGAAGTTTTTTTACTCAATGGACTT
* * * *
114474 GTTACGTTAACTCTCATAAATTTACATTAAGATTTAAAATTTAATTATTTTACCTTTATAAGTTT
131 GTTACATTAACTCTCACAAATTTACATTAAAATTTAAAATTTAATTATTCTACCTTTATAAGTTT
114539 TTACGTCAACTGTTATAGTTTTATACCAAGATTTATCTATGTCAATTTTAAACTATAA
196 TTACGTCAACTGTTATAGTTTTATACCAAGATTTATCTATGTCAATTTTAAACTATAA
*
114597 TTATTTTTATTATTATTA-T-TTTATTTAAAAAATAAAATTTATATATCGTTAAGCACTTTTAGT
1 TTATTTTTATTATTATTATTGTTTATTTAAAAAATAAAATTTATATATCGTTAAGCACATTTAGT
** * * *
114660 TTAAGAATATATATTTAAATATTTAGTTT-TTACTAAAATTA-AATTTTTTTTACTTAATGGACT
66 AGAAGAATATATATTTAAATATTTA-TTTGTCACTAAAATTAGAAGTTTTTTTACTCAATGGACT
** * * * **
114723 TGTTACATTAACTCTCACACGTTTACGTTAAAATTTAAATTTTAGTTATTCTATTTTTATAAGTT
130 TGTTACATTAACTCTCACAAATTTACATTAAAATTTAAAATTTAATTATTCTACCTTTATAAGTT
114788 TTTACGTCA
195 TTTACGTCA
114797 TTTCTTACAA
Statistics
Matches: 179, Mismatches: 20, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
250 82 0.46
251 75 0.42
252 4 0.02
253 18 0.10
ACGTcount: A:0.35, C:0.09, G:0.07, T:0.49
Consensus pattern (253 bp):
TTATTTTTATTATTATTATTGTTTATTTAAAAAATAAAATTTATATATCGTTAAGCACATTTAGT
AGAAGAATATATATTTAAATATTTATTTGTCACTAAAATTAGAAGTTTTTTTACTCAATGGACTT
GTTACATTAACTCTCACAAATTTACATTAAAATTTAAAATTTAATTATTCTACCTTTATAAGTTT
TTACGTCAACTGTTATAGTTTTATACCAAGATTTATCTATGTCAATTTTAAACTATAA
Found at i:115630 original size:251 final size:249
Alignment explanation
Indices: 114904--115755 Score: 841
Period size: 247 Copynumber: 3.4 Consensus size: 249
114894 NNNNNNNNNN
* * * *
114904 ATTATTTTTATTTAAAAATTAAAATTTACATATCT-TTACATACTTTTAG-CTCTATAATATAAA
1 ATTATTTTTATTTAAAAATTAAAATTTATATAT-TGTTAAATACTTTTAGTC-CAAAAATATAAA
* * * *
114967 TATAAATACTTATTTTTCATTAAAATTAGACTGTTTTACTTAATTAACTTATTACGTTAACTCTC
64 TTTAAATA-TTATTTTTCAATAAAATTAGACTTTTTTACTTAATTGACTTATTACGTTAACTCTC
* ** ********** *
115032 ACACATTTATGTNNNNNNNNNNAATTTAGTTATTCCACTTTTATAAGTTTTTACATCAATTCTTA
128 ACACATATACATTAAAAATTAAAATTTAGTTATTTCACTTTTATAAGTTTTTACATCAATTCTTA
* *
115097 AAATTTTATATTAAGACTTATTTATATCAATTTTAAACTATAATTATTTTTATCCTT
193 AAATTTTATGTTAAGACTTATTTATGTCAATTTTAAACTATAATTATTTTTATCCTT
********** * ** *
115154 ATTATTNNNNNNNNNNAATTAAAATTTATATATTGTTAAATACTTTTATTCCACGACTATAAATT
1 ATTATTTTTATTTAAAAATTAAAATTTATATATTGTTAAATACTTTTAGTCCAAAAATATAAATT
* * *
115219 TAAATA-T-TTTTTCAATAAAATTAGATTTTTTTATTTAATTGACTTATTATGTTAACTCTCACA
66 TAAATATTATTTTTCAATAAAATTAGACTTTTTTACTTAATTGACTTATTACGTTAACTCTCACA
** * * * * * * *
115282 CATATATGTTAGAATTTAAAATTTAATTATTTTA-TCTTTATCAGTTTTTACATCAATTTTTATA
131 CATATACATTAAAAATTAAAATTTAGTTATTTCACT-TTTATAAGTTTTTACATCAATTCTTAAA
* * * *
115346 ATTTTATGTCAAGATTTTTTTATGTCCATTTTAAACTATAATTATTTTTATCCTT
195 ATTTTATGTTAAGACTTATTTATGTCAATTTTAAACTATAATTATTTTTATCCTT
* * * * * *
115401 ATTATTCTTTATTTAAAAAGTAAAACTTGTATATCGTTAAACACTTTTGGTCCAAAAATATAAAT
1 ATTATT-TTTATTTAAAAATTAAAATTTATATATTGTTAAATACTTTTAGTCCAAAAATATAAAT
* * * * * *
115466 TTAAATATTTATTTTTTACTAAAATTAGAGTTTTTTACTTAATTGATTTGTTGCGTTAACTCTCA
65 TTAAATA-TTATTTTTCAATAAAATTAGACTTTTTTACTTAATTGACTTATTACGTTAACTCTCA
* * ** * *
115531 CACGTTTACATTAAAAATTAAAATTTAGTTATTTCACTTTTATAAGTTTTTATGTTAATTCTTAC
129 CACATATACATTAAAAATTAAAATTTAGTTATTTCACTTTTATAAGTTTTTACATCAATTCTTAA
* * * * *
115596 ACTTTTACGTTAAAACTTATCTATGTTAATTTTAAACTATAATTATTTTTATCCTT
194 AATTTTATGTTAAGACTTATTTATGTCAATTTTAAACTATAATTATTTTTATCCTT
* * * * * *
115652 ACTATTTTTATTTAAAAATTAAAATTTATATATTGTTACATACTTTTAGCCCGATAATATAAATA
1 ATTATTTTTATTTAAAAATTAAAATTTATATATTGTTAAATACTTTTAGTCCAAAAATATAAATT
* *
115717 TAAATGCTTATTTTTCATTAAAATTAGACTTTTTTACTT
66 TAAAT-ATTATTTTTCAATAAAATTAGACTTTTTTACTT
115756 GAGAAAATTG
Statistics
Matches: 479, Mismatches: 114, Indels: 18
0.78 0.19 0.03
Matches are distributed among these distances:
246 1 0.00
247 150 0.31
248 46 0.10
249 1 0.00
250 132 0.28
251 148 0.31
252 1 0.00
ACGTcount: A:0.34, C:0.10, G:0.05, T:0.48
Consensus pattern (249 bp):
ATTATTTTTATTTAAAAATTAAAATTTATATATTGTTAAATACTTTTAGTCCAAAAATATAAATT
TAAATATTATTTTTCAATAAAATTAGACTTTTTTACTTAATTGACTTATTACGTTAACTCTCACA
CATATACATTAAAAATTAAAATTTAGTTATTTCACTTTTATAAGTTTTTACATCAATTCTTAAAA
TTTTATGTTAAGACTTATTTATGTCAATTTTAAACTATAATTATTTTTATCCTT
Found at i:116011 original size:63 final size:63
Alignment explanation
Indices: 115913--116032 Score: 159
Period size: 63 Copynumber: 1.9 Consensus size: 63
115903 CTCTTTCTCT
* * * *
115913 CTCAGCTCTTTGAACTATATCAACTCTGTTAACTCTCTATTAAGCACCATTGTCATCAAGTCG
1 CTCAACTCTCTGAACTATATCAACTCTGTCAACTCTCTATTAAGCACCATCGTCATCAAGTCG
* * * * *
115976 CTCAACTCTCTGAACTATATGAGCTTTGTCAACTCTCTGTTGAGCACCATCGTCATC
1 CTCAACTCTCTGAACTATATCAACTCTGTCAACTCTCTATTAAGCACCATCGTCATC
116033 GNNNNNNNNN
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
63 48 1.00
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.34
Consensus pattern (63 bp):
CTCAACTCTCTGAACTATATCAACTCTGTCAACTCTCTATTAAGCACCATCGTCATCAAGTCG
Found at i:136021 original size:24 final size:22
Alignment explanation
Indices: 135986--136030 Score: 63
Period size: 24 Copynumber: 2.0 Consensus size: 22
135976 ACATTTAAAG
*
135986 TATAATAAAGTATTTATATATA
1 TATAATAAAGTAATTATATATA
136008 TATATATAATAGTAATTATATAT
1 TATA-ATAA-AGTAATTATATAT
136031 TGGGTGAGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 4 0.20
23 4 0.20
24 12 0.60
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (22 bp):
TATAATAAAGTAATTATATATA
Found at i:141178 original size:40 final size:40
Alignment explanation
Indices: 141119--141198 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
141109 GTAACCTATA
* *
141119 TCGACTCTTAACCATGTTCTTAATATGATATCAGAGAGTT
1 TCGACTCTTAACCAGGTTCTTAACATGATATCAGAGAGTT
* *
141159 TCGACTTTTAACCAGGTTCTTAACATGGTATCAGAGAGTT
1 TCGACTCTTAACCAGGTTCTTAACATGATATCAGAGAGTT
141199 CTTAAGTTCT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.36
Consensus pattern (40 bp):
TCGACTCTTAACCAGGTTCTTAACATGATATCAGAGAGTT
Found at i:144235 original size:16 final size:16
Alignment explanation
Indices: 144205--144255 Score: 75
Period size: 16 Copynumber: 3.1 Consensus size: 16
144195 TAACAAAGTG
*
144205 AGAAGAGAAAAGGAGAA
1 AGAA-AGAAAGGGAGAA
144222 AGAAAGAAAGGGAGAA
1 AGAAAGAAAGGGAGAA
*
144238 AGAAAGAAAGGAAGAA
1 AGAAAGAAAGGGAGAA
144254 AG
1 AG
144256 TAGGAAAAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
16 28 0.88
17 4 0.12
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (16 bp):
AGAAAGAAAGGGAGAA
Found at i:144262 original size:16 final size:16
Alignment explanation
Indices: 144213--144280 Score: 72
Period size: 16 Copynumber: 4.5 Consensus size: 16
144203 TGAGAAGAGA
144213 AAAGG-AGAAAGAAAG
1 AAAGGAAGAAAGAAAG
*
144228 AAAGGGAGAAAGAAAG
1 AAAGGAAGAAAGAAAG
* *
144244 AAAGGAAGAAAGTAGG
1 AAAGGAAGAAAGAAAG
*
144260 AAA--AAGAAA-AAGG
1 AAAGGAAGAAAGAAAG
144273 AAAGGAAG
1 AAAGGAAG
144281 GATCGGATTA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
13 6 0.13
14 6 0.13
15 8 0.17
16 26 0.57
ACGTcount: A:0.65, C:0.00, G:0.34, T:0.01
Consensus pattern (16 bp):
AAAGGAAGAAAGAAAG
Found at i:159887 original size:8 final size:8
Alignment explanation
Indices: 159870--159919 Score: 66
Period size: 8 Copynumber: 6.4 Consensus size: 8
159860 TCTTCCTCCG
159870 TTCTTCCT
1 TTCTTCCT
*
159878 TTCTTGCT
1 TTCTTCCT
*
159886 TTCTCCCT
1 TTCTTCCT
*
159894 TTCTTTCT
1 TTCTTCCT
159902 TTC-TCCT
1 TTCTTCCT
159909 TTCTTCCT
1 TTCTTCCT
159917 TTC
1 TTC
159920 AAGCCAAAAG
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
7 6 0.17
8 29 0.83
ACGTcount: A:0.00, C:0.36, G:0.02, T:0.62
Consensus pattern (8 bp):
TTCTTCCT
Found at i:159894 original size:16 final size:15
Alignment explanation
Indices: 159874--159919 Score: 65
Period size: 15 Copynumber: 3.0 Consensus size: 15
159864 CCTCCGTTCT
*
159874 TCCTTTCTTGCTTTC
1 TCCTTTCTTCCTTTC
*
159889 TCCCTTTCTTTCTTTC
1 T-CCTTTCTTCCTTTC
159905 TCCTTTCTTCCTTTC
1 TCCTTTCTTCCTTTC
159920 AAGCCAAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 14 0.50
16 14 0.50
ACGTcount: A:0.00, C:0.37, G:0.02, T:0.61
Consensus pattern (15 bp):
TCCTTTCTTCCTTTC
Found at i:160851 original size:19 final size:18
Alignment explanation
Indices: 160827--160866 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
160817 TTAATATTTT
*
160827 AATATTATTTTATTAATAA
1 AATATTATTTTAATAA-AA
160846 AATATTATTTTAATAAAA
1 AATATTATTTTAATAAAA
160864 AAT
1 AAT
160867 TTTCCACTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
AATATTATTTTAATAAAA
Found at i:170603 original size:23 final size:23
Alignment explanation
Indices: 170558--170603 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
170548 TCCTTTTATT
*
170558 ATATATTATTATTTTCTTCTTTA
1 ATATATTATTATTTTCTTATTTA
*
170581 ATATTTTATTATTTAT-TTATTTA
1 ATATATTATTATTT-TCTTATTTA
170604 TTTTAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.67
Consensus pattern (23 bp):
ATATATTATTATTTTCTTATTTA
Found at i:184145 original size:17 final size:18
Alignment explanation
Indices: 184115--184153 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
184105 CAAACACTAC
*
184115 ATATATTCTAAAAATTAAT
1 ATATATTC-AAAAATAAAT
184134 ATATATTC-AAAATAAAT
1 ATATATTCAAAAATAAAT
184151 ATA
1 ATA
184154 AAAAATTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 11 0.58
19 8 0.42
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (18 bp):
ATATATTCAAAAATAAAT
Found at i:185153 original size:26 final size:24
Alignment explanation
Indices: 185088--185155 Score: 68
Period size: 26 Copynumber: 2.7 Consensus size: 24
185078 ATATGATTAT
185088 ATTATTAAAATTT-ATA-ATAAAAA
1 ATTA-TAAAATTTAATATATAAAAA
*
185111 ATTATAAACATCATAATATATAAAAA
1 ATTATAAA-AT-TTAATATATAAAAA
185137 ATATAATAAAATTTAATAT
1 AT-T-ATAAAATTTAATAT
185156 CAATAAATCT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
22 4 0.11
23 6 0.16
24 1 0.03
25 3 0.08
26 15 0.41
27 3 0.08
28 5 0.14
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (24 bp):
ATTATAAAATTTAATATATAAAAA
Found at i:196982 original size:28 final size:28
Alignment explanation
Indices: 196921--196983 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 28
196911 ATTTAATCCA
*
196921 AAAATAAAAATATAATATTTGATTAAAT
1 AAAATAAAAATATAAAATTTGATTAAAT
* *
196949 ATAAT-AAAATAATAAAATTT-ATTAATTT
1 AAAATAAAAAT-ATAAAATTTGATTAA-AT
196977 AAAATAA
1 AAAATAA
196984 TTCAAAATGT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
27 10 0.36
28 17 0.61
29 1 0.04
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (28 bp):
AAAATAAAAATATAAAATTTGATTAAAT
Found at i:235523 original size:2 final size:2
Alignment explanation
Indices: 235516--235549 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
235506 AACAGCAGAC
*
235516 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
235550 CAGAGAAGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:238139 original size:21 final size:21
Alignment explanation
Indices: 238115--238157 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
238105 AATAGTATAA
238115 TATTTTAAAAAACTT-TTAAAT
1 TATTTTAAAAAA-TTATTAAAT
238136 TATTTTAAAAAATTATTAAAT
1 TATTTTAAAAAATTATTAAAT
238157 T
1 T
238158 TGTTATTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
TATTTTAAAAAATTATTAAAT
Found at i:256456 original size:8 final size:8
Alignment explanation
Indices: 256443--256468 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
256433 GAATGACTAA
256443 AAGTTTGG
1 AAGTTTGG
256451 AAGTTTGG
1 AAGTTTGG
256459 AAGTTTGG
1 AAGTTTGG
256467 AA
1 AA
256469 TTGCATGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.35, T:0.35
Consensus pattern (8 bp):
AAGTTTGG
Found at i:262621 original size:2 final size:2
Alignment explanation
Indices: 262614--262646 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
262604 ACTCAGAAAA
262614 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
262647 AGTTCTAGGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:269412 original size:10 final size:10
Alignment explanation
Indices: 269393--269422 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
269383 TTAAGATTAA
*
269393 TAATTTAAAT
1 TAATTAAAAT
269403 TAATTAAAAT
1 TAATTAAAAT
269413 TAATTAAAAT
1 TAATTAAAAT
269423 ATTTATTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (10 bp):
TAATTAAAAT
Found at i:272659 original size:2 final size:2
Alignment explanation
Indices: 272652--272686 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
272642 AGGAGTTAAA
272652 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
272687 ATACATAGAC
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 2 0.06
2 29 0.94
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:273568 original size:6 final size:6
Alignment explanation
Indices: 273548--273598 Score: 57
Period size: 6 Copynumber: 8.2 Consensus size: 6
273538 GAGGAAGAGC
* * *
273548 AAGAAA AAAAAA AAGAAA AAGGAAA AAGGAA AAGGAA AAGAAA CAAGAAA
1 AAGAAA AAGAAA AAGAAA AA-GAAA AAGAAA AAGAAA AAGAAA -AAGAAA
273598 A
1 A
273599 GCATAGAGAT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
6 27 0.69
7 12 0.31
ACGTcount: A:0.78, C:0.02, G:0.20, T:0.00
Consensus pattern (6 bp):
AAGAAA
Found at i:274031 original size:22 final size:20
Alignment explanation
Indices: 273982--274038 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 20
273972 CAGAGAAAAA
273982 AAAAAGAGAAAGAGATAAGT
1 AAAAAGAGAAAGAGATAAGT
*
274002 AAGTAAAGAGATAGAGATAGAGAT
1 AA--AAAGAGAAAGAGATA-AG-T
*
274026 AAAAAGAAAAAGA
1 AAAAAGAGAAAGA
274039 AAAGTTTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
20 2 0.07
22 23 0.77
23 2 0.07
24 3 0.10
ACGTcount: A:0.65, C:0.00, G:0.25, T:0.11
Consensus pattern (20 bp):
AAAAAGAGAAAGAGATAAGT
Found at i:279695 original size:3 final size:3
Alignment explanation
Indices: 279687--279718 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
279677 TCAGGAACTG
*
279687 CTT CTT CTT CTT CTT CTT CTT TTT CTT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
279719 CCTACCTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
CTT
Found at i:279728 original size:18 final size:18
Alignment explanation
Indices: 279691--279730 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
279681 GAACTGCTTC
* * *
279691 TTCTTCTTCTTCTTCTTT
1 TTCTTCTTCTCCTACCTT
279709 TTCTTCTTCTCCTACCTT
1 TTCTTCTTCTCCTACCTT
279727 TTCT
1 TTCT
279731 ATACCTTCCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.03, C:0.33, G:0.00, T:0.65
Consensus pattern (18 bp):
TTCTTCTTCTCCTACCTT
Found at i:284495 original size:3 final size:3
Alignment explanation
Indices: 284487--284512 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
284477 ATGTTACTGC
284487 ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
284513 NNNNNNNNNN
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:285573 original size:27 final size:26
Alignment explanation
Indices: 285543--285594 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
285533 AATAAAAAAT
**
285543 AATATATTATTTTATTTTTTAAATATG
1 AATATATTA-TTTATAATTTAAATATG
*
285570 AATATTTTATTTATAATTTAAATAT
1 AATATATTATTTATAATTTAAATAT
285595 TATTATGATG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (26 bp):
AATATATTATTTATAATTTAAATATG
Found at i:285624 original size:16 final size:18
Alignment explanation
Indices: 285605--285642 Score: 62
Period size: 16 Copynumber: 2.2 Consensus size: 18
285595 TATTATGATG
285605 ATTTATTTTT-AAT-TTA
1 ATTTATTTTTAAATATTA
285621 ATTTATTTTTAAATATTA
1 ATTTATTTTTAAATATTA
285639 ATTT
1 ATTT
285643 TTATAATTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 10 0.50
17 3 0.15
18 7 0.35
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
ATTTATTTTTAAATATTA
Found at i:285824 original size:20 final size:20
Alignment explanation
Indices: 285799--285898 Score: 69
Period size: 22 Copynumber: 4.8 Consensus size: 20
285789 TTAATCGTTT
285799 ATAATTTATTTATAATATTA
1 ATAATTTATTTATAATATTA
**
285819 ATAATTTACCATTTA-AATACAA
1 ATAATTT---ATTTATAATATTA
*
285841 ATATTTTATTTATAA-ATTA
1 ATAATTTATTTATAATATTA
* * *
285860 ATCATTAAATTTTTAAAATATTA
1 ATAATT---TATTTATAATATTA
*
285883 ATATTTTATTTATAAT
1 ATAATTTATTTATAAT
285899 TAAATATTAT
Statistics
Matches: 59, Mismatches: 13, Indels: 16
0.67 0.15 0.18
Matches are distributed among these distances:
19 11 0.19
20 17 0.29
22 18 0.31
23 13 0.22
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (20 bp):
ATAATTTATTTATAATATTA
Found at i:285832 original size:27 final size:28
Alignment explanation
Indices: 285775--285833 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 28
285765 TTATTTTTAT
* ** *
285775 TTTATTTTTAAATATTAATCGTTTATAA
1 TTTATTTATAAATATTAATAATTTACAA
*
285803 TTTATTTAT-AATATTAATAATTTACCA
1 TTTATTTATAAATATTAATAATTTACAA
285830 TTTA
1 TTTA
285834 AATACAAATA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
27 18 0.69
28 8 0.31
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (28 bp):
TTTATTTATAAATATTAATAATTTACAA
Found at i:285852 original size:42 final size:43
Alignment explanation
Indices: 285803--285898 Score: 115
Period size: 42 Copynumber: 2.3 Consensus size: 43
285793 TCGTTTATAA
* *
285803 TTTATTTATAATATTAATAATTTACCATTT-AAATACAAATAT
1 TTTATTTATAATATTAATAATTAAACATTTAAAATACAAATAT
* ** **
285845 TTTATTTATAA-ATTAATCATTAAATTTTTAAAATATTAATAT
1 TTTATTTATAATATTAATAATTAAACATTTAAAATACAAATAT
285887 TTTATTTATAAT
1 TTTATTTATAAT
285899 TAAATATTAT
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
41 13 0.29
42 32 0.71
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (43 bp):
TTTATTTATAATATTAATAATTAAACATTTAAAATACAAATAT
Found at i:285926 original size:154 final size:154
Alignment explanation
Indices: 285556--285981 Score: 439
Period size: 154 Copynumber: 2.7 Consensus size: 154
285546 ATATTATTTT
* * *
285556 ATTTTTTAAATATGAATATTTTATTTATAATTTAAATATTATTATGATGATTTATTTTTAATTTA
1 ATTTTTAAAATATTAATATTTTATTTATAATTTAAATATTATTATGATTATTTA--TTT--TTTA
* * * * * **
285621 ATTTATTTTTAAATATTAATTTTTATAATTTGTTTAAGATATTAAAAATTGATAATTTAAATATT
62 TTTTATTTTTAAATATTAATTTTTATAATTTATTTAA-ATATTAATAATTTACAATTTAAATACA
* *
285686 AATATTTTATTTATAATTTGATCATTAAC
126 AATATTTTATTTATAAATTAATCATTAAC
* **********
285715 A-TTATAAAATACTT-ATATTTTATTTATAATTTAAATNNNNNNNNNNTTATTTA-TTTTTATTT
1 ATTTTTAAAATA-TTAATATTTTATTTATAATTTAAATATTATTATGATTATTTATTTTTTATTT
* *
285777 TATTTTTAAATATTAATCGTTTATAATTTATTTATAATATTAATAATTTACCATTTAAATACAAA
65 TATTTTTAAATATTAAT-TTTTATAATTTATTTA-AATATTAATAATTTACAATTTAAATACAAA
285842 TATTTTATTTATAAATTAATCATTAA-
128 TATTTTATTTATAAATTAATCATTAAC
*
285868 ATTTTTAAAATATTAATATTTTATTTATAA-TTAAATATTATTATGATTAATTATTTTTTATTTT
1 ATTTTTAAAATATTAATATTTTATTTATAATTTAAATATTATTATGATTATTTATTTTTTATTTT
* * * * *
285932 ATTTTTTATATATGAATATTTTTTATTTTATTTAAAATATTAATATTTTA
66 A-TTTTTAAATATTAAT-TTTTATAATTTATTT-AAATATTAATAATTTA
285982 TTTATAATTT
Statistics
Matches: 215, Mismatches: 44, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
153 38 0.18
154 96 0.45
155 42 0.20
156 1 0.00
158 36 0.17
159 2 0.01
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.55
Consensus pattern (154 bp):
ATTTTTAAAATATTAATATTTTATTTATAATTTAAATATTATTATGATTATTTATTTTTTATTTT
ATTTTTAAATATTAATTTTTATAATTTATTTAAATATTAATAATTTACAATTTAAATACAAATAT
TTTATTTATAAATTAATCATTAAC
Found at i:285971 original size:29 final size:27
Alignment explanation
Indices: 285913--285980 Score: 82
Period size: 27 Copynumber: 2.4 Consensus size: 27
285903 TATTATTATG
* *
285913 ATTAATTATTTTTTATTTTATTTTTTATAT
1 ATTAA-TATTTTTTATTTTA--TTTAAAAT
*
285943 ATGAATATTTTTTATTTTATTTAAAAT
1 ATTAATATTTTTTATTTTATTTAAAAT
285970 ATTAATATTTT
1 ATTAATATTTT
285981 ATTTATAATT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
27 16 0.47
29 14 0.41
30 4 0.12
ACGTcount: A:0.32, C:0.00, G:0.01, T:0.66
Consensus pattern (27 bp):
ATTAATATTTTTTATTTTATTTAAAAT
Found at i:286069 original size:287 final size:293
Alignment explanation
Indices: 285675--286422 Score: 728
Period size: 287 Copynumber: 2.6 Consensus size: 293
285665 AAAATTGATA
* *
285675 ATTT-AAATATTAATATTTTATTTATAATTTGATCATTAACATTATAAAATACTTATATTTTATT
1 ATTTAAAATATTAATATTTTATTTATAATTTAATCATTAACATTATAAAATACTAATATTTTATT
********** *
285739 TATAATTTAAATNNNNNNNNNNTTATTTATTTTTATTTTATTTTT-AAATATTAATCGTTTATAA
66 TATAATTTAAATGTTATTATGATTATTTATTTTTATTTTATTTTTAAAATATTAATCATTTATAA
* *
285803 TTTATTTATAATATTAATAATTTACCATTTAAATACAAATATTTTATTTATAAATT-AATCATTA
131 TTTATTTATAATATTAATAATTTACAATTTAAAAACAAATATTTTATTTATAAATTAAAT-ATTA
** * * * * ** * ** ** * ***
285867 -AATTTTTAAAATATTAATA-TTT-TATTTATAATTAAATATTATTATG-A-TTAATTATTTTTT
195 TAATGATTAAAATATTAATACTTTGGAATAAAAAAGAAATA-GAAAATGAACAAAAATACCCTTT
** * *
285927 ATTTTATTTTTTATATATGA-ATATT-TTTTATTTT
259 ATCATA-TATATATATATGATATATTATTTTATTTT
* * *
285961 ATTTAAAATATTAATATTTTATTTATAATTTAACCATCAACGTTATAAAATACTAATATTTTATT
1 ATTTAAAATATTAATATTTTATTTATAATTTAATCATTAACATTATAAAATACTAATATTTTATT
* * * * *
286026 TATAATTTAAATGTTGTTATGATTATTTATTGTTATTTTATTTTTCAAATATCAATAATTTATAA
66 TATAATTTAAATGTTATTATGATTATTTATTTTTATTTTATTTTTAAAATATTAATCATTTATAA
* * * * * ** * *
286091 TTGACTTA-ACTATTAATAATTGATAATTTAAAAATTAATATTTTATTTATAATTTAAATGTTAT
131 TTTATTTATAATATTAATAATTTACAATTTAAAAACAAATATTTTATTTATAAATTAAATATTAT
* *
286155 TATGATTAAAATATTAATACTTTGGAATAAAAAAGGAATAGAAAATGAAAAACAAAAATACCCTT
196 AATGATTAAAATATTAATACTTTGGAATAAAAAAGAAATAGAAAATG---AACAAAAATACCCTT
*
286220 TATCATATATATATATATGATTATTTTATTTTATTTT
258 TATCATATATATATATATGA-TATATTATTTTATTTT
* * *
286257 ATTTTTAAAATATTAATATTTTATTTATAATCTAATCATTAACATTATAAAATACGAATATTTAA
1 A--TTTAAAATATTAATATTTTATTTATAATTTAATCATTAACATTATAAAATACTAATATTTTA
* * * *
286322 GTTATAGTGTTTAACTGTTATTATGATTATCTATTTTTATTTTATTTTTAAAATATTAATCATTT
64 TTTATA--ATTTAAATGTTATTATGATTATTTATTTTTATTTTATTTTTAAAATATTAATCATTT
*
286387 ATATTTTATTTATAATATTAATAATTTA-AATGTTAA
127 ATAATTTATTTATAATATTAATAATTTACAAT-TTAA
286423 TATGGTTATT
Statistics
Matches: 368, Mismatches: 74, Indels: 25
0.79 0.16 0.05
Matches are distributed among these distances:
286 4 0.01
287 131 0.36
288 41 0.11
289 7 0.02
290 9 0.02
293 12 0.03
294 11 0.03
295 4 0.01
296 10 0.03
298 61 0.17
300 61 0.17
301 17 0.05
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.51
Consensus pattern (293 bp):
ATTTAAAATATTAATATTTTATTTATAATTTAATCATTAACATTATAAAATACTAATATTTTATT
TATAATTTAAATGTTATTATGATTATTTATTTTTATTTTATTTTTAAAATATTAATCATTTATAA
TTTATTTATAATATTAATAATTTACAATTTAAAAACAAATATTTTATTTATAAATTAAATATTAT
AATGATTAAAATATTAATACTTTGGAATAAAAAAGAAATAGAAAATGAACAAAAATACCCTTTAT
CATATATATATATATGATATATTATTTTATTTT
Found at i:286398 original size:27 final size:28
Alignment explanation
Indices: 286354--286414 Score: 79
Period size: 27 Copynumber: 2.2 Consensus size: 28
286344 ATGATTATCT
* *
286354 ATTTTTATTTTATTTTTAAAATATTAATC
1 ATTTATATTTTA-TTTTAAAATATTAATA
*
286383 ATTTATATTTTA-TTTATAATATTAATA
1 ATTTATATTTTATTTTAAAATATTAATA
286410 ATTTA
1 ATTTA
286415 AATGTTAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 18 0.62
29 11 0.38
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (28 bp):
ATTTATATTTTATTTTAAAATATTAATA
Found at i:286415 original size:80 final size:78
Alignment explanation
Indices: 286331--286490 Score: 189
Period size: 78 Copynumber: 2.0 Consensus size: 78
286321 AGTTATAGTG
* * * *
286331 TTTAACTGTTATTATGATTATCTATTTTTATTTTATTTTTAAAATATT-AATCATTTATATTTTA
1 TTTAAATGTTAATATGATTATCTATTTTTA-TTTAGTTTT-AAATATTAAAT-ATTAATATTTTA
286395 TTTATAATATTAAT-AA
63 TTTATAAT-TTAATCAA
* * ** *
286411 TTTAAATGTTAATATGGTTATTTATTTTTATTTAGTTTTATCTTTTAAATATTAATATTTTATTT
1 TTTAAATGTTAATATGATTATCTATTTTTATTTAGTTTTAAATATTAAATATTAATATTTTATTT
286476 ATAATTTAATCAA
66 ATAATTTAATCAA
286489 TT
1 TT
286491 ATATTATAAA
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
77 5 0.07
78 27 0.39
79 11 0.16
80 26 0.38
ACGTcount: A:0.34, C:0.03, G:0.04, T:0.59
Consensus pattern (78 bp):
TTTAAATGTTAATATGATTATCTATTTTTATTTAGTTTTAAATATTAAATATTAATATTTTATTT
ATAATTTAATCAA
Found at i:302150 original size:6 final size:6
Alignment explanation
Indices: 302141--302168 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
302131 ATTTAAAAAG
302141 AAAATA AAAATA AAAATA AAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAA
302169 ATATCTTCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:315032 original size:2 final size:2
Alignment explanation
Indices: 315025--315053 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
315015 GCAAAATTAC
315025 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
315054 ATGGCGAAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:320870 original size:3 final size:3
Alignment explanation
Indices: 320862--320902 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
320852 CTCACCTTTC
320862 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
320903 ATCTTGTTTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:332758 original size:12 final size:12
Alignment explanation
Indices: 332741--332765 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
332731 AAGCAAAGAT
332741 AGAAAATGACAC
1 AGAAAATGACAC
332753 AGAAAATGACAC
1 AGAAAATGACAC
332765 A
1 A
332766 AATAACTAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.16, T:0.08
Consensus pattern (12 bp):
AGAAAATGACAC
Found at i:338423 original size:20 final size:19
Alignment explanation
Indices: 338400--338438 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
338390 GTGGGGGGAA
338400 AGAGAA-AGAGAGAAACGGGG
1 AGAGAACAGA-AGAAA-GGGG
338420 AGAGAACAGAAGAAAGGGG
1 AGAGAACAGAAGAAAGGGG
338439 TTTATACGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 11 0.61
21 3 0.17
ACGTcount: A:0.51, C:0.05, G:0.44, T:0.00
Consensus pattern (19 bp):
AGAGAACAGAAGAAAGGGG
Found at i:343277 original size:16 final size:16
Alignment explanation
Indices: 343256--343286 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
343246 AACTGAATTT
*
343256 TTTTTATCTTTTCAAA
1 TTTTTAACTTTTCAAA
343272 TTTTTAACTTTTCAA
1 TTTTTAACTTTTCAA
343287 TCCACTTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.13, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTTTAACTTTTCAAA
Found at i:344678 original size:54 final size:54
Alignment explanation
Indices: 344596--344704 Score: 209
Period size: 54 Copynumber: 2.0 Consensus size: 54
344586 TGATTCGATC
344596 CTCATGGTCATCGGCTACGTAAGCATTTGATAGAAATTAATATCAAAGCAAGGT
1 CTCATGGTCATCGGCTACGTAAGCATTTGATAGAAATTAATATCAAAGCAAGGT
*
344650 CTCATGGTCATCGGTTACGTAAGCATTTGATAGAAATTAATATCAAAGCAAGGT
1 CTCATGGTCATCGGCTACGTAAGCATTTGATAGAAATTAATATCAAAGCAAGGT
344704 C
1 C
344705 ACGAGTAGTG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (54 bp):
CTCATGGTCATCGGCTACGTAAGCATTTGATAGAAATTAATATCAAAGCAAGGT
Found at i:344812 original size:26 final size:26
Alignment explanation
Indices: 344776--344835 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
344766 GAGGAAACAA
344776 AATTATAAAATATTAAAAAAATAAAAG
1 AATTATAAAAT-TTAAAAAAATAAAAG
* * *
344803 AATT-TAAAATTTTAAATAATAAAAT
1 AATTATAAAATTTAAAAAAATAAAAG
344828 AATATATA
1 AAT-TATA
344836 TATATATAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
25 15 0.54
26 7 0.25
27 6 0.21
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (26 bp):
AATTATAAAATTTAAAAAAATAAAAG
Found at i:348473 original size:6 final size:6
Alignment explanation
Indices: 348464--348517 Score: 72
Period size: 6 Copynumber: 8.8 Consensus size: 6
348454 AAAAAGGTAA
***
348464 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AATTTT AAAATAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA-AT AAAAAT
348513 AAAAA
1 AAAAA
348518 ATTAAATCAT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
6 36 0.88
7 5 0.12
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (6 bp):
AAAAAT
Found at i:349186 original size:2 final size:2
Alignment explanation
Indices: 349181--349211 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
349171 ATATATATAT
349181 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
349212 AGAAATGCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:357563 original size:41 final size:40
Alignment explanation
Indices: 357493--357608 Score: 117
Period size: 41 Copynumber: 2.8 Consensus size: 40
357483 TTAATTAAAT
* * * **
357493 TATTAATATTTTGATCATAATAATATTAAATTATGAGTAAAA
1 TATTAATA-TTTAAACATATTAATATTAAATTAT-AACAAAA
* * *
357535 TGTTAGTGTTTAAA-ATATTAATGATTAAATTATAACAAAA
1 TATTAATATTTAAACATATTAAT-ATTAAATTATAACAAAA
357575 TATTAATATTTAAACATATTAATAATTAAATTAT
1 TATTAATATTTAAACATATTAAT-ATTAAATTAT
357609 TAATATTTAA
Statistics
Matches: 60, Mismatches: 12, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
40 23 0.38
41 32 0.53
42 5 0.08
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.43
Consensus pattern (40 bp):
TATTAATATTTAAACATATTAATATTAAATTATAACAAAA
Found at i:357595 original size:16 final size:15
Alignment explanation
Indices: 357571--357620 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
357561 AAATTATAAC
357571 AAAATATTAATATTT
1 AAAATATTAATATTT
*
357586 AAACATATTAATAATT
1 AAA-ATATTAATATTT
*
357602 AAATTATTAATATTT
1 AAAATATTAATATTT
357617 AAAA
1 AAAA
357621 CTAAAATAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
15 16 0.53
16 14 0.47
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (15 bp):
AAAATATTAATATTT
Found at i:357613 original size:15 final size:16
Alignment explanation
Indices: 357574--357619 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
357564 TTATAACAAA
357574 ATATTAATATTTAAAC
1 ATATTAATATTTAAAC
*
357590 ATATTAATAATTAAA-
1 ATATTAATATTTAAAC
*
357605 TTATTAATATTTAAA
1 ATATTAATATTTAAA
357620 ACTAAAATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 13 0.48
16 14 0.52
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (16 bp):
ATATTAATATTTAAAC
Found at i:364612 original size:20 final size:20
Alignment explanation
Indices: 364556--364612 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 20
364546 TAAGGACAAA
*
364556 ATTATAAAATTTTATAAACT
1 ATTATAAAATTTTAAAAACT
* ** *
364576 ATTTTAAAAAATAAAAATAC-
1 ATTATAAAATTTTAAAA-ACT
364596 ATTATAAAATTTTAAAA
1 ATTATAAAATTTTAAAA
364613 CTTTTACAAG
Statistics
Matches: 27, Mismatches: 9, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
20 25 0.93
21 2 0.07
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.39
Consensus pattern (20 bp):
ATTATAAAATTTTAAAAACT
Found at i:367708 original size:29 final size:29
Alignment explanation
Indices: 367659--367716 Score: 66
Period size: 29 Copynumber: 2.0 Consensus size: 29
367649 AAAATAAATC
*
367659 TTATTATAATAAAAAGTTTAAGT-TTTTAA
1 TTATTATAATAAAAAGATTAA-TATTTTAA
*
367688 TTATATATTATAAAAA-ATTAATATTTTAA
1 TTAT-TATAATAAAAAGATTAATATTTTAA
367717 ATTTGAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
28 1 0.04
29 14 0.56
30 10 0.40
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (29 bp):
TTATTATAATAAAAAGATTAATATTTTAA
Found at i:367872 original size:20 final size:20
Alignment explanation
Indices: 367828--367872 Score: 56
Period size: 22 Copynumber: 2.2 Consensus size: 20
367818 TTCACATTTA
367828 AAATGTTAATATTTAAACTAT
1 AAATGTTAATATTTAAAC-AT
*
367849 AAATGATTAATATTTTAA-AT
1 AAATG-TTAATATTTAAACAT
367869 AAAT
1 AAAT
367873 TATAAAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 6 0.27
21 5 0.23
22 11 0.50
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.42
Consensus pattern (20 bp):
AAATGTTAATATTTAAACAT
Found at i:367888 original size:27 final size:26
Alignment explanation
Indices: 367841--367925 Score: 75
Period size: 26 Copynumber: 3.2 Consensus size: 26
367831 TGTTAATATT
*
367841 TAAACTAT-AAATGATTAATATTTTAAA
1 TAAA-TATAAAAT-ATTCATATTTTAAA
*
367868 TAAATTATAAAATATTCATATTTAAAAA
1 TAAA-TATAAAATATTCATATTT-TAAA
* *
367896 TAAA-ATAAAATAATCATATATTATAA
1 TAAATATAAAATATTCATATTTTA-AA
367922 TAAA
1 TAAA
367926 GAGCATTGTT
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
25 1 0.02
26 21 0.43
27 16 0.33
28 11 0.22
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.38
Consensus pattern (26 bp):
TAAATATAAAATATTCATATTTTAAA
Found at i:368288 original size:21 final size:24
Alignment explanation
Indices: 368245--368291 Score: 73
Period size: 21 Copynumber: 2.1 Consensus size: 24
368235 TAACTAAAAA
368245 AATTATAATATATAAAGTTAAATT
1 AATTATAATATATAAAGTTAAATT
368269 AATTATAAT-TAT-AA-TTAAATT
1 AATTATAATATATAAAGTTAAATT
368290 AA
1 AA
368292 CTAGATCCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 9 0.39
22 2 0.09
23 3 0.13
24 9 0.39
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (24 bp):
AATTATAATATATAAAGTTAAATT
Found at i:369302 original size:30 final size:30
Alignment explanation
Indices: 369268--369327 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
369258 GAGTACCATC
369268 TATAAGTATAAAAACAAATATAAACTAGAA
1 TATAAGTATAAAAACAAATATAAACTAGAA
** *
369298 TATAAGTATATTAACAAATATAAAGTAGAA
1 TATAAGTATAAAAACAAATATAAACTAGAA
369328 GGATAAAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.60, C:0.05, G:0.08, T:0.27
Consensus pattern (30 bp):
TATAAGTATAAAAACAAATATAAACTAGAA
Found at i:370384 original size:23 final size:23
Alignment explanation
Indices: 370349--370392 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
370339 TTCACCAATA
370349 TATTTTATATAAA-AGTAATTATT
1 TATTTTATATAAACA-TAATTATT
370372 TATTTTA-ACTAAACATAATTA
1 TATTTTATA-TAAACATAATTA
370393 AACTTGTGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 1 0.05
23 17 0.89
24 1 0.05
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (23 bp):
TATTTTATATAAACATAATTATT
Found at i:373085 original size:2 final size:2
Alignment explanation
Indices: 373078--373110 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
373068 TCAAATTACA
*
373078 AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
373111 CATTCTCTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Done.