Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018398562.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1854.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5015
ACGTcount: A:0.28, C:0.09, G:0.10, T:0.26
Warning! 1326 characters in sequence are not A, C, G, or T
Found at i:1256 original size:172 final size:170
Alignment explanation
Indices: 706--2061 Score: 1365
Period size: 172 Copynumber: 7.9 Consensus size: 170
696 NNNNNNNNNN
* * * *
706 AGTAATAAGGCTTTTGATA-GAATGGGTGACTATAAATGGACTTTTCTTGCCAATCAGTGCCTTT
1 AGTAATAAGGCTTTTGA-AGGAATAGGAGACTATAAATGGACTTTTCTTGCCAATGAATG-CTTT
* * * * * *
770 TTGTTTATGTTTCTCA-AGGTAAACATTCAATTATAGTCTGTTTT-ACCCACAATAG-AATAAAA
64 TTCTTCATGTTTCT-AGAGCTAAACATTCAATTATAGTCTGTTTTAACCAAAAAT-GTAAAAAAA
* * * *
832 TTCCACTTAAAATCAATTATGAGATTATAAAACTATTTAAAACA
127 TTCAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCG
* * * * * * * *
876 AGTAGTAACGCTTTTAAAGGAATGGGTGACTATAAATGGACTTTTTTTTTGCTAGTGAATGCCTT
1 AGTAATAAGGCTTTTGAAGGAATAGGAGACTATAAATGGAC--TTTTCTTGCCAATGAATG-CTT
** * * **
941 AGTCTTCATGTTTTCTA-AGGTAGAGGTTCAATTATAGTCTGTTTTAACCAAAAATGCT-AAAAA
63 TTTCTTCATG-TTTCTAGAGCTAAACATTCAATTATAGTCTGTTTTAACCAAAAATG-TAAAAAA
* * * *
1004 CTTCAACTTAAAATCAATTACGAGTTTATAAAACTATTTAAAGCG
126 ATTCAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCG
* * * * * *
1049 AGTAATATGACTTTTGAAGGAATGGGCGACTATAAATGGACTTTTCCTACCAATGAATGTCTTTT
1 AGTAATAAGGCTTTTGAAGGAATAGGAGACTATAAATGGACTTTTCTTGCCAATGAATG-CTTTT
* * * * *
1114 TCTTCACGTTTCTAGAACTAAACATTCAATTATAATCTATTTTAACCAATAATGTAAAAAAAATT
65 TCTTCATGTTTCTAGAGCTAAACATTCAATTATAGTCTGTTTTAACCAAAAATGT-AAAAAAATT
*
1179 CAACTCAAAAT-AATTATGAGATTATAAAACAATTTTAAAGCG
129 CAACTTAAAATCAATTATGAGATTATAAAACAA-TTTAAAGCG
* * * * * * *
1221 AGTATTAAGGCCTTTGAAAGAATATGAGACTATAAATGGATTTTTCTTGTCAATAAATGCTTTTT
1 AGTAATAAGGCTTTTGAAGGAATAGGAGACTATAAATGGACTTTTCTTGCCAATGAATGC-TTTT
* * * *
1286 TCTTCATGTTTCTCGAGGTAAACATTCAATTATAGTCTGTTTTAACTAAAAATATAAAAAAATTC
65 TCTTCATGTTTCTAGAGCTAAACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTC
* * *
1351 AACTTAAAATCAATTATGAGATTACAAAACTATTTAAAGTG
130 AACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCG
1392 AGTAATAAGGC-TTTGTAAGGAAT-GGATGACTATAAATGGACTTTTCTTGCCAATGAATGCTTG
1 AGTAATAAGGCTTTTG-AAGGAATAGGA-GACTATAAATGGACTTTTCTTGCCAATGAATGCTT-
* * * * * *
1455 TTTCTTCATGTTTCTCA-AGCTAGACCTTCAATTTATAGTGTGTTTTAGCTAAAAATGTAAAACA
63 TTTCTTCATGTTTCT-AGAGCTAAACATTCAA-TTATAGTCTGTTTTAACCAAAAATGTAAAAAA
*
1519 ATTCAACTTAAAACCAATTATGAGATTATAAAAGC-ATTTAAAGCG
126 ATTCAACTTAAAATCAATTATGAGATTATAAAA-CAATTTAAAGCG
* * * * * * * *
1564 AGTAATATGTCTTTTGAAAGAATAGGTGACTATAAATAGACTTTTCCTACCAATGAATATCTTTT
1 AGTAATAAGGCTTTTGAAGGAATAGGAGACTATAAATGGACTTTTCTTGCCAATGAAT-GCTTTT
* * *
1629 TCTTCATGTTTCTAGAGCTAAACATTCAATTATAATCTATTTTAACCAATAATGTAAAAATAATT
65 TCTTCATGTTTCTAGAGCTAAACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAA-AATT
* * * * *
1694 GAACTTCAAATCAATTTTGAGATTATAAAACCATTTAAAGTG
129 CAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCG
* * *
1736 AGTAATAAGGCTTTTGACGGAATAGGAGACTATAAATAGACTTTTCTTGTCAATGAATGCTTGTT
1 AGTAATAAGGCTTTTGAAGGAATAGGAGACTATAAATGGACTTTTCTTGCCAATGAATGCTT-TT
* * * *
1801 TATACATGTTTCTAGAAG-TAGACATTCAATTATAGTCTGTTTTAACTAAAAATGTAAAAAAA-T
65 TCTTCATGTTTCTAG-AGCTAAACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATT
* * *
1864 CTAACTTAAAATTAATTATGAGGTTATAAAATAATTTAAAGCG
129 C-AACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCG
*********** * * *
1907 AGTAATAAGGC-TNNNNNNNNNNNGGAGACTATAAATGGACCTGTCTTGCCAATAAATGCTTGTT
1 AGTAATAAGGCTTTTGAAGGAATAGGAGACTATAAATGGACTTTTCTTGCCAATGAATGCTT-TT
* * * * * *
1971 TCTTCATGTTTCTTGAAG-TAGACATTTAATTATAGTCTTTTTTTAACTAAAAATGTAAAACAAT
65 TCTTCATGTTTCTAG-AGCTAAACATTCAATTATAGTC-TGTTTTAACCAAAAATGTAAAAAAAT
2035 TCAACTTAAAATCAATTATGAGATTAT
128 TCAACTTAAAATCAATTATGAGATTAT
2062 NNNNNNNNNN
Statistics
Matches: 991, Mismatches: 165, Indels: 59
0.82 0.14 0.05
Matches are distributed among these distances:
169 1 0.00
170 122 0.12
171 294 0.30
172 472 0.48
173 102 0.10
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.36
Consensus pattern (170 bp):
AGTAATAAGGCTTTTGAAGGAATAGGAGACTATAAATGGACTTTTCTTGCCAATGAATGCTTTTT
CTTCATGTTTCTAGAGCTAAACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTCA
ACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCG
Found at i:1354 original size:343 final size:341
Alignment explanation
Indices: 706--2061 Score: 1412
Period size: 343 Copynumber: 4.0 Consensus size: 341
696 NNNNNNNNNN
* *
706 AGTAATAAGGCTTTTGATA-GAATGGGTGACTATAAATGGACTTTTCTTGCCAATCAGTGCCTT-
1 AGTAATAAGGCTTTTGA-AGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATG-CTTG
* * ** * * *
769 TTTGTTTATGTTTCTCAAGGTAAACATTCAATTATAGTCTGTTTT-ACCCACAATAG-AATAAAA
64 TTTCTTCATGTTTCTCAAACTAAACATTCAATTATAGTCTGTTTTAACCAAAAAT-GTAAAAAAA
* * * * * * *
832 TTCCACTTAAAA-TCAATTATGAGATTATAAAACTATTTAAAACAAGTAGTAACGCTTTTAAAGG
128 TTCAACTTAAAACT-AATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTGAAA-G
* * * * * * * ** *
896 AATGGGTGACTATAAATGGACTTTTTTTTTGCTAGTGAATGCCTTAGTCTTCATGTTT-TCTAAG
191 AATAGGAGACTATAAATGGAC--TTTTCTTGCCAATAAATGCTTTTTTCTTCATGTTTCTC-GAG
* ** *
960 GTAGAGGTTCAATTATAGTCTGTTTTAACCAAAAATGCT-AAAAACTTCAACTTAAAATCAATTA
253 GTAAACATTCAATTATAGTCTGTTTTAACCAAAAATG-TAAAAAAATTCAACTTAAAATCAATTA
* * *
1024 CGAGTTTATAAAACTATTTAAAGCG
317 TGAGATTATAAAACTATTTAAAGTG
* * * * *
1049 AGTAATATGACTTTTGAAGGAATGGGCGACTATAAATGGACTTTTCCTACCAATGAATGTCTT-T
1 AGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATG-CTTGT
* * * *
1113 TTCTTCACGTTTCT-AGAACTAAACATTCAATTATAATCTATTTTAACCAATAATGTAAAAAAAA
65 TTCTTCATGTTTCTCA-AACTAAACATTCAATTATAGTCTGTTTTAACCAAAAATGT-AAAAAAA
* *
1177 TTCAACTCAAAA-TAATTATGAGATTATAAAACAATTTTAAAGCGAGTATTAAGGCCTTTGAAAG
128 TTCAACTTAAAACTAATTATGAGATTATAAAACAA-TTTAAAGCGAGTAATAAGG-CTTTGAAAG
* * *
1241 AATATGAGACTATAAATGGATTTTTCTTGTCAATAAATGCTTTTTTCTTCATGTTTCTCGAGGTA
191 AATAGGAGACTATAAATGGACTTTTCTTGCCAATAAATGCTTTTTTCTTCATGTTTCTCGAGGTA
* *
1306 AACATTCAATTATAGTCTGTTTTAACTAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAG
256 AACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAG
*
1371 ATTACAAAACTATTTAAAGTG
321 ATTATAAAACTATTTAAAGTG
*
1392 AGTAATAAGGC-TTTGTAAGGAATGGATGACTATAAATGGACTTTTCTTGCCAATGAATGCTTGT
1 AGTAATAAGGCTTTTG-AAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCTTGT
* * * * * * *
1456 TTCTTCATGTTTCTCAAGCTAGACCTTCAATTTATAGTGTGTTTTAGCTAAAAATGTAAAACAAT
65 TTCTTCATGTTTCTCAAACTAAACATTCAA-TTATAGTCTGTTTTAACCAAAAATGTAAAAAAAT
* * *
1521 TCAACTTAAAACCAATTATGAGATTATAAAAGC-ATTTAAAGCGAGTAATATGTCTTTTGAAAGA
129 TCAACTTAAAACTAATTATGAGATTATAAAA-CAATTTAAAGCGAGTAATAAGGC-TTTGAAAGA
* * * * * *
1585 ATAGGTGACTATAAATAGACTTTTCCTACCAATGAATAT-C-TTTTTCTTCATGTTTCTAGAGCT
192 ATAGGAGACTATAAATGGACTTTTCTTGCCAAT-AA-ATGCTTTTTTCTTCATGTTTCTCGAGGT
* * * * * *
1648 AAACATTCAATTATAATCTATTTTAACCAATAATGTAAAAATAATTGAACTTCAAATCAATTTTG
255 AAACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAA-AATTCAACTTAAAATCAATTATG
*
1713 AGATTATAAAACCATTTAAAGTG
319 AGATTATAAAACTATTTAAAGTG
* * * * *
1736 AGTAATAAGGCTTTTGACGGAATAGGAGACTATAAATAGACTTTTCTTGTCAATGAATGCTTGTT
1 AGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCTTGTT
* * * * *
1801 TATACATGTTTCT-AGAAGTAGACATTCAATTATAGTCTGTTTTAACTAAAAATGTAAAAAAA-T
66 TCTTCATGTTTCTCA-AACTAAACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATT
* * * **********
1864 CTAACTTAAAATTAATTATGAGGTTATAAAATAATTTAAAGCGAGTAATAAGGCTNNNNNNNNNN
130 C-AACTTAAAACTAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTGAAAGAAT
* * * * * * *
1929 NGGAGACTATAAATGGACCTGTCTTGCCAATAAATGCTTGTTTCTTCATGTTTCTTGAAGTAGAC
194 AGGAGACTATAAATGGACTTTTCTTGCCAATAAATGCTTTTTTCTTCATGTTTCTCGAGGTAAAC
* * * *
1994 ATTTAATTATAGTCTTTTTTTAACTAAAAATGTAAAACAATTCAACTTAAAATCAATTATGAGAT
259 ATTCAATTATAGTC-TGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGAT
2059 TAT
323 TAT
2062 NNNNNNNNNN
Statistics
Matches: 846, Mismatches: 141, Indels: 53
0.81 0.14 0.05
Matches are distributed among these distances:
340 2 0.00
341 3 0.00
342 99 0.12
343 489 0.58
344 189 0.22
345 57 0.07
346 7 0.01
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.36
Consensus pattern (341 bp):
AGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCTTGTT
TCTTCATGTTTCTCAAACTAAACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTC
AACTTAAAACTAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTGAAAGAATAG
GAGACTATAAATGGACTTTTCTTGCCAATAAATGCTTTTTTCTTCATGTTTCTCGAGGTAAACAT
TCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
AAAACTATTTAAAGTG
Found at i:1733 original size:515 final size:512
Alignment explanation
Indices: 706--2061 Score: 1726
Period size: 515 Copynumber: 2.6 Consensus size: 512
696 NNNNNNNNNN
* * * * * * *
706 AGTAATAAGGCTTTTGATAGAATGGGTGACTATAAATGGACTTTTCTTGCCAATCAGTGCCTTTT
1 AGTAATAAGGCTTTTGAAAGAATAGGAGACTATAAATGGACTTTTCTTGTCAATAAATGCTTTTT
* * * ** * * *
771 TGTTTATGTTTCTCAAGGTAAACATTCAATTATAGTCTGTTTT-ACCCACAATAGAATAAAATTC
66 TATTCATGTTTCTCGAGGTAAACATTCAATTATAGTCTGTTTTAACTAAAAATATAAAAAAATTC
* * * * *
835 CACTTAAAATCAATTATGAGATTATAAAACTATTTAAAACAAGTAGTAACGCTTTTAAAGGAATG
131 AACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTT-AAGGAATG
* * * *
900 GGTGACTATAAATGGACTTTTTTTTTGCTAGTGAATGCCTTAG--TCTTCATGTTT-TCTAAGGT
195 GATGACTATAAATGGAC--TTTTCTTGCCAATGAATG-CTT-GTTTCTTCATGTTTCTC-AA-GT
** * * *
962 AGAGGTTCAATTATAGTCTGTTTTAACCAAAAATGCTAAAA-ACTTCAACTTAAAATCAATTACG
254 AGACATTCAATTATAGTCTGTTTTAACTAAAAATG-TAAAACAATTCAACTTAAAATCAATTATG
* * * *
1026 AGTTTATAAAACTATTTAAAGCGAGTAATATGACTTTTGAAGGAATGGGCGACTATAAATGGACT
318 AGATTATAAAACTATTTAAAGCGAGTAATATGACTTTTGAAAGAATAGGCGACTATAAATAGACT
*
1091 TTTCCTACCAATGAATGTCTTTTTCTTCACGTTTCTAGAACTAAACATTCAATTATAATCTATTT
383 TTTCCTACCAATGAATATCTTTTTCTTCACGTTTCTAGAACTAAACATTCAATTATAATCTATTT
1156 TAACCAATAATGTAAAAAAAATTCAACTCAAAATAATTATGAGATTATAAAACAATTTTAAAGCG
448 TAACCAATAATGTAAAAAAAATTCAACTCAAAATAATTATGAGATTATAAAACAATTTTAAAGCG
* * * *
1221 AGTATTAAGGCCTTTGAAAGAATATGAGACTATAAATGGATTTTTCTTGTCAATAAATGCTTTTT
1 AGTAATAAGGCTTTTGAAAGAATAGGAGACTATAAATGGACTTTTCTTGTCAATAAATGCTTTTT
*
1286 TCTTCATGTTTCTCGAGGTAAACATTCAATTATAGTCTGTTTTAACTAAAAATATAAAAAAATTC
66 TATTCATGTTTCTCGAGGTAAACATTCAATTATAGTCTGTTTTAACTAAAAATATAAAAAAATTC
* *
1351 AACTTAAAATCAATTATGAGATTACAAAACTATTTAAAGTGAGTAATAAGGCTTTGTAAGGAATG
131 AACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTT-TAAGGAATG
*
1416 GATGACTATAAATGGACTTTTCTTGCCAATGAATGCTTGTTTCTTCATGTTTCTCAAGCTAGACC
195 GATGACTATAAATGGACTTTTCTTGCCAATGAATGCTTGTTTCTTCATGTTTCTCAAG-TAGACA
* * *
1481 TTCAATTTATAGTGTGTTTTAGCTAAAAATGTAAAACAATTCAACTTAAAACCAATTATGAGATT
259 TTCAA-TTATAGTCTGTTTTAACTAAAAATGTAAAACAATTCAACTTAAAATCAATTATGAGATT
* *
1546 ATAAAAGC-ATTTAAAGCGAGTAATATGTCTTTTGAAAGAATAGGTGACTATAAATAGACTTTTC
323 ATAAAA-CTATTTAAAGCGAGTAATATGACTTTTGAAAGAATAGGCGACTATAAATAGACTTTTC
* *
1610 CTACCAATGAATATCTTTTTCTTCATGTTTCTAGAGCTAAACATTCAATTATAATCTATTTTAAC
387 CTACCAATGAATATCTTTTTCTTCACGTTTCTAGAACTAAACATTCAATTATAATCTATTTTAAC
* * * * *
1675 CAATAATGTAAAAATAATTGAACTTC-AAATCAATTTTGAGATTATAAAACCA-TTTAAAGTG
452 CAATAATGTAAAAAAAATTCAAC-TCAAAAT-AATTATGAGATTATAAAACAATTTTAAAGCG
** * * *
1736 AGTAATAAGGCTTTTGACGGAATAGGAGACTATAAATAGACTTTTCTTGTCAATGAATGCTTGTT
1 AGTAATAAGGCTTTTGAAAGAATAGGAGACTATAAATGGACTTTTCTTGTCAATAAATGCTTTTT
* * * * *
1801 TATACATGTTTCTAGAAGTAGACATTCAATTATAGTCTGTTTTAACTAAAAATGTAAAAAAA-TC
66 TATTCATGTTTCTCGAGGTAAACATTCAATTATAGTCTGTTTTAACTAAAAATATAAAAAAATTC
* * *********
1865 TAACTTAAAATTAATTATGAGGTTATAAAA-TAATTTAAAGCGAGTAATAAGGCTNNNNNNNNNN
131 -AACTTAAAATCAATTATGAGATTATAAAACT-ATTTAAAGCGAGTAATAAGGCT-TTTAAGGAA
* * * * *
1929 NGGA-GACTATAAATGGACCTGTCTTGCCAATAAATGCTTGTTTCTTCATGTTTCTTGAAGTAGA
193 TGGATGACTATAAATGGACTTTTCTTGCCAATGAATGCTTGTTTCTTCATGTTTC-TCAAGTAGA
* *
1993 CATTTAATTATAGTCTTTTTTTAACTAAAAATGTAAAACAATTCAACTTAAAATCAATTATGAGA
257 CATTCAATTATAGTC-TGTTTTAACTAAAAATGTAAAACAATTCAACTTAAAATCAATTATGAGA
2058 TTAT
321 TTAT
2062 NNNNNNNNNN
Statistics
Matches: 734, Mismatches: 91, Indels: 33
0.86 0.11 0.04
Matches are distributed among these distances:
512 1 0.00
513 11 0.01
514 151 0.21
515 460 0.63
516 110 0.15
517 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.36
Consensus pattern (512 bp):
AGTAATAAGGCTTTTGAAAGAATAGGAGACTATAAATGGACTTTTCTTGTCAATAAATGCTTTTT
TATTCATGTTTCTCGAGGTAAACATTCAATTATAGTCTGTTTTAACTAAAAATATAAAAAAATTC
AACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTAAGGAATGG
ATGACTATAAATGGACTTTTCTTGCCAATGAATGCTTGTTTCTTCATGTTTCTCAAGTAGACATT
CAATTATAGTCTGTTTTAACTAAAAATGTAAAACAATTCAACTTAAAATCAATTATGAGATTATA
AAACTATTTAAAGCGAGTAATATGACTTTTGAAAGAATAGGCGACTATAAATAGACTTTTCCTAC
CAATGAATATCTTTTTCTTCACGTTTCTAGAACTAAACATTCAATTATAATCTATTTTAACCAAT
AATGTAAAAAAAATTCAACTCAAAATAATTATGAGATTATAAAACAATTTTAAAGCG
Found at i:2584 original size:172 final size:170
Alignment explanation
Indices: 2258--2630 Score: 430
Period size: 172 Copynumber: 2.2 Consensus size: 170
2248 NNNNNNNNNN
* * * * *
2258 AAAATTCAACTTAAAATCAGTAATGAGATTATAAAACAATTTAAAGCGAGTAATTAGACTTTTGA
1 AAAATTTAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCCAGTAATTAGACCTTTGA
* * * * * *
2323 AGGAATAAGACACTATAAATGGACTTTTGTTGCTAATGAATGCTTATTTCTTCATGTTTCTCGAG
66 AAGAATAAGACACTATAAATGGACTTTTCTTGCCAATGAATGCTTATTTATTCATGTTGCTCAAG
* * *
2388 GTAAACATTAATTTGTAGTCTGTTTTAA-CAAAAAAAAGTGAA
131 GTAAACATTAATTTATAATCTGTTTCAACCAAAAAAAA---AA
* * * * *
2430 AAAATTTAACTCAAAATCAATTATGATATTATAAAACAATTTCAAGCCTGT-ATTAAGGCCTTTG
1 AAAATTTAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCCAGTAATT-AGACCTTTG
* * *
2494 AAAGAATATGAGACTATAAATGGACTTTTCTTGCCAATGAATGCCTT-TTTATTTATGTTGCTCA
65 AAAGAATAAGACACTATAAATGGACTTTTCTTGCCAATGAATG-CTTATTTATTCATGTTGCTCA
*
2558 AGGTAAACATTCAA-TTATAATCTGTTTCAACCCAAAATAAAAA
129 AGGTAAACATT-AATTTATAATCTGTTTCAA-CCAAAAAAAAAA
* *
2601 AATATTTCACTTAAAATCAATTATGAGATT
1 AAAATTTAACTTAAAATCAATTATGAGATT
2631 NNNNNNNNNN
Statistics
Matches: 169, Mismatches: 27, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
171 31 0.18
172 125 0.74
173 5 0.03
174 8 0.05
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (170 bp):
AAAATTTAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCCAGTAATTAGACCTTTGA
AAGAATAAGACACTATAAATGGACTTTTCTTGCCAATGAATGCTTATTTATTCATGTTGCTCAAG
GTAAACATTAATTTATAATCTGTTTCAACCAAAAAAAAAA
Done.