Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398574.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1865.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3343
ACGTcount: A:0.21, C:0.08, G:0.07, T:0.24

Warning! 1303 characters in sequence are not A, C, G, or T


Found at i:335 original size:171 final size:171

Alignment explanation


    Indices: 1--373  Score: 412
    Period size: 171  Copynumber: 2.2  Consensus size: 171

                                                *                      *     
          1 TAAATGGTTTTCTAATCTAATAATTGATTTTAAGTTGAATATTTTTACATTTTTCACTATAACAG
          1 TAAATGGTTTTCTAATCTAATAATTGATTTTAAGTTCAATATTTTTACATTTTTCACTAAAACAG

              *      *               *             *               *         
         66 ACTATAATTGAATGTCTAACACAATTAATAAGAAGAAAAGAGCATCCATTGGCAAGAAAAGTTCA
         66 ACAATAATTCAATGTCTAACACAATGAATAAGAAGAAAAAAGCATCCATTGGCAAAAAAAGTTCA

                       **********     *               
        131 TATATAGCCTCNNNNNNNNNNAAAAGGTTTATTACT-AGCTT
        131 TATATAGCCTCCCACTCGTTCAAAAGCTTTATTACTCA-CTT

               *       *                                           * *       
        172 TAATTGGTTTTTTAATCTAATAATTGATTTTAAGTTCAATATTTTT-CTATTTTTTATTAAAACA
          1 TAAATGGTTTTCTAATCTAATAATTGATTTTAAGTTCAATATTTTTAC-ATTTTTCACTAAAACA

                               ***          *              *                 
        236 GACAATAATTCAATGTCTATTTCAA-GAACTATGAAGAAAAAAGCATTCATTGGCAAAAAAAG-T
         65 GACAATAATTCAATGTCTAACACAATGAA-TAAGAAGAAAAAAGCATCCATTGGCAAAAAAAGTT

                *                   *                   
        299 CTATTTATAGCCTCCCACTCGTTCGAAAGCTTTATTACTCACTT
        129 C-ATATATAGCCTCCCACTCGTTCAAAAGCTTTATTACTCACTT

                              *            
        343 TAAATGGTTTTCTAATCTCATAATTGATTTT
          1 TAAATGGTTTTCTAATCTAATAATTGATTTT

        374 NNNNNNNNNN


Statistics
Matches: 166,  Mismatches: 32, Indels: 8
        0.81            0.16        0.04

Matches are distributed among these distances:
 170    5  0.03
 171  160  0.96
 172    1  0.01

ACGTcount: A:0.36, C:0.13, G:0.11, T:0.38


Consensus pattern (171 bp):   
TAAATGGTTTTCTAATCTAATAATTGATTTTAAGTTCAATATTTTTACATTTTTCACTAAAACAG
ACAATAATTCAATGTCTAACACAATGAATAAGAAGAAAAAAGCATCCATTGGCAAAAAAAGTTCA
TATATAGCCTCCCACTCGTTCAAAAGCTTTATTACTCACTT
Done.