Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397386.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_68.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 30101
ACGTcount: A:0.17, C:0.07, G:0.07, T:0.16

Warning! 16110 characters in sequence are not A, C, G, or T


Found at i:24135 original size:21 final size:22

Alignment explanation


    Indices: 24100--24143  Score: 72
    Period size: 21  Copynumber: 2.0  Consensus size: 22

      24090 CTCTTGAAGT

                                  
      24100 AATTTAAAATAAAATAACATAA
          1 AATTTAAAATAAAATAACATAA

                    *             
      24122 AATTT-AACTAAAATAACATAA
          1 AATTTAAAATAAAATAACATAA

             
      24143 A
          1 A

      24144 TTAATCACTT


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  21   16  0.76
  22    5  0.24

ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27


Consensus pattern (22 bp):   
AATTTAAAATAAAATAACATAA
Done.