Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018398591.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1882.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7213
ACGTcount: A:0.33, C:0.11, G:0.12, T:0.30
Warning! 980 characters in sequence are not A, C, G, or T
Found at i:865 original size:341 final size:339
Alignment explanation
Indices: 463--1140 Score: 800
Period size: 341 Copynumber: 2.0 Consensus size: 339
453 NNNNNACTTA
*
463 AAATCAATTATGAGATTATAAAACTATTTAAAGTGAGTAATAAGGCATTCAAAGCCATGAGTGAC
1 AAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCATTCAAAGCCATGAGTGAC
* ** * *
528 AATCAATGAACTTTTCACTCCAATGGATGG-GTTTTGCTTCACGT-TTTC-TAAGATAGGCATTC
66 AATAAATGAACTTTTCACTCCAATAAATGGCGTTTTAC-TCA--TATTTCTTAAGATAGACATTC
*
590 AATTATAATATATTTTAATAAAAAATGTAAAAAAAATT-AACTTAAAATCAAGTATGAGATTATA
128 AATTATAATATATTTTAACAAAAAA--TAAAAAAAATTCAACTTAAAATCAAGTATGAGATTATA
* * ***
654 AAACTATTTAAAGCGAGTAATAATG-TTTTCGAAGGCATGAGTGACTATCAA-TGAACTTTTCTC
191 AAACTATTTAAAGCGAGAAATAAGGCTTTT-GAAAAAATGAGTGACTAT-AAGTGAACTTTTCT-
* * * *
717 T-CCAATGGATGGCTTTCACTTCATGTTT-CTAGAGATAGACATTTAATTATAATATATTTTAAC
253 TGCCAATGAATGGCTTTCAC-TCACGTTTCCTA-AGACAGACATTCAATTATAATATATTTTAAC
* *
780 TAAAAATGTAAAAAAATTCAACCT
316 CAAAAATATAAAAAAATTCAACCT
* * *
804 AAATCAATTATGAGATTATAAAA-TCATTT-AAGACGAGTAATAAGGCTTTCGAAGGCATGAGTG
1 AAATCAATTATGAGATTATAAAACT-ATTTAAAG-CGAGTAATAAGGCATTCAAAGCCATGAGTG
* * ** * * *
867 ACTATAAATGTACTTTTCTTTTCAATAAATGGCTTTTTACTCATATTTCTTAAGATAGACATTCG
64 ACAATAAATGAACTTTTCACTCCAATAAATGGCGTTTTACTCATATTTCTTAAGATAGACATTCA
* * * * * *
932 ATTATAATATATTTTAACCAACAATATAGAAAATTCAACTTAAAATGAATTATGAGATTATAAAA
129 ATTATAATATATTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCAAGTATGAGATTATAAAA
* * * * *
997 CTATTTAAAGTGTGAAATAAGGCTTTTGAAAAAATGGGTTACTATAAGTGGACTTTTCTTGCCAA
194 CTATTTAAAGCGAGAAATAAGGCTTTTGAAAAAATGAGTGACTATAAGTGAACTTTTCTTGCCAA
** *
1062 TGAATGGCTTTTTCTCACGTTTCCTAAGACAGACATTCAATTATAATCTATTTTAACCAAAAATA
259 TGAATGGCTTTCACTCACGTTTCCTAAGACAGACATTCAATTATAATATATTTTAACCAAAAATA
1127 TAAAAAAATTCAAC
324 TAAAAAAATTCAAC
1141 TTAANNNNNN
Statistics
Matches: 285, Mismatches: 42, Indels: 22
0.82 0.12 0.06
Matches are distributed among these distances:
339 68 0.24
340 94 0.33
341 118 0.41
342 5 0.02
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (339 bp):
AAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCATTCAAAGCCATGAGTGAC
AATAAATGAACTTTTCACTCCAATAAATGGCGTTTTACTCATATTTCTTAAGATAGACATTCAAT
TATAATATATTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCAAGTATGAGATTATAAAACT
ATTTAAAGCGAGAAATAAGGCTTTTGAAAAAATGAGTGACTATAAGTGAACTTTTCTTGCCAATG
AATGGCTTTCACTCACGTTTCCTAAGACAGACATTCAATTATAATATATTTTAACCAAAAATATA
AAAAAATTCAACCT
Found at i:869 original size:170 final size:169
Alignment explanation
Indices: 458--1144 Score: 794
Period size: 170 Copynumber: 4.0 Consensus size: 169
448 NNNNNNNNNN
* * * *
458 ACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGTGAGTAATAAGGCATTCAAAGCCATGA
1 ACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGA
* * * * * *
523 GTGACAATCAATGAACTTTTCACTCCAATGGATGGGTTTTGCTTCACGTTTTCTAAGATAGGCAT
66 GTGACTATCAATGAACTTTTCTCTCCAATGAATGGCTTTTAC-TCACG-TTTCTAAGATAGACAT
** *
588 TCAATTATAATATATTTTAATAAAAAATGTAAAAAAAATT-A
129 TCAATTATAATATATTTTAACCAAAAATAT-AAAAAAATTCA
* * *
629 ACTTAAAATCAAGTATGAGATTATAAAACTATTTAAAGCGAGTAATAATGTTTTCGAAGGCATGA
1 ACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGA
* * *
694 GTGACTATCAATGAACTTTTCTCTCCAATGGATGGCTTTCACTTCATGTTTCTAGAGATAGACAT
66 GTGACTATCAATGAACTTTTCTCTCCAATGAATGGCTTTTAC-TCACGTTTCTA-AGATAGACAT
* * *
759 TTAATTATAATATATTTTAACTAAAAATGTAAAAAAATTCA
129 TCAATTATAATATATTTTAACCAAAAATATAAAAAAATTCA
*
800 ACCT-AAATCAATTATGAGATTATAAAA-TCATTT-AAGACGAGTAATAAGGCTTTCGAAGGCAT
1 ACTTAAAATCAATTATGAGATTATAAAACT-ATTTAAAG-CGAGTAATAAGGCTTTCGAAGGCAT
* * * * * **
862 GAGTGACTATAAATGTACTTTTCTTTTCAATAAATGGCTTTTTACTCATATTTCTTAAGATAGAC
64 GAGTGACTATCAATGAACTTTTCTCTCCAATGAATGGC-TTTTACTCACGTTTC-TAAGATAGAC
* * *
927 ATTCGATTATAATATATTTTAACCAACAATAT-AGAAAATTCA
127 ATTCAATTATAATATATTTTAACCAAAAATATAAAAAAATTCA
* * * * * *** *
969 ACTTAAAATGAATTATGAGATTATAAAACTATTTAAAGTGTGAAATAAGGCTTTTGAAAAAATGG
1 ACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGA
* * * *
1034 GTTACTAT-AAGTGGACTTTTCT-TGCCAATGAATGGCTTTTTCTCACGTTTCCTAAGACAGACA
66 GTGACTATCAA-TGAACTTTTCTCT-CCAATGAATGGCTTTTACTCACGTTT-CTAAGATAGACA
*
1097 TTCAATTATAATCTATTTTAACCAAAAATATAAAAAAATTCA
128 TTCAATTATAATATATTTTAACCAAAAATATAAAAAAATTCA
1139 ACTTAA
1 ACTTAA
1145 NNNNNNNNNN
Statistics
Matches: 446, Mismatches: 57, Indels: 27
0.84 0.11 0.05
Matches are distributed among these distances:
169 68 0.15
170 227 0.51
171 151 0.34
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (169 bp):
ACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGA
GTGACTATCAATGAACTTTTCTCTCCAATGAATGGCTTTTACTCACGTTTCTAAGATAGACATTC
AATTATAATATATTTTAACCAAAAATATAAAAAAATTCA
Found at i:1549 original size:170 final size:161
Alignment explanation
Indices: 1249--1590 Score: 325
Period size: 170 Copynumber: 2.1 Consensus size: 161
1239 NNNNNNACCT
* *** *
1249 AAAA-TCAA-TTATGAGATTATAAAACTATTTAAAGTAAGTAATAAGGCTTTCAAGGGCATTGGT
1 AAAATTCAACTTATGAGATTATAAAACCATTTAAAGTAAGTAATAAGGCTTTCAAGAAAATGGGT
** * * * ** ** *
1312 GACTATAAATGGACTTTTCATGTCAATGAATGGCTTTTTCTTCATGTTTCTGAAGGTAGACATTC
66 GACTATAAATGGACTTTTCATACCAATGAATAGCTTTTTCTTCACGTCTCCCAAGACAGAAATTC
*
1377 AA-TATAATCTGTTTTAA-CTAAAAATATAAA
131 AATTATAATCTATTTTAATC-AAAAATATAAA
* ** *
1407 AAAATTCAACNNNNNNNNNNTTATGAGATTATAAAACCATTTAAAGTGAGTAATAAAGTTTTTTA
1 AAAATTCAAC----------TTATGAGATTATAAAACCATTTAAAGTAAGTAAT-AAGGCTTTCA
* * * *
1472 A-AAAATGGGTGACTATAAGTGGACTTTTCTTACCATTGAATAGCTTTTTCTTTACGTCTCCCAA
55 AGAAAATGGGTGACTATAAATGGACTTTTCATACCAATGAATAGCTTTTTCTTCACGTCTCCCAA
1536 GACAGAAATTCAATTATAATCTATTTTAATCAAAAATATAAA
120 GACAGAAATTCAATTATAATCTATTTTAATCAAAAATATAAA
1578 AAAATTCAACTTA
1 AAAATTCAACTTA
1591 AAATCCATTA
Statistics
Matches: 145, Mismatches: 24, Indels: 27
0.74 0.12 0.14
Matches are distributed among these distances:
158 4 0.03
159 4 0.03
161 3 0.02
170 90 0.62
171 43 0.30
172 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.35
Consensus pattern (161 bp):
AAAATTCAACTTATGAGATTATAAAACCATTTAAAGTAAGTAATAAGGCTTTCAAGAAAATGGGT
GACTATAAATGGACTTTTCATACCAATGAATAGCTTTTTCTTCACGTCTCCCAAGACAGAAATTC
AATTATAATCTATTTTAATCAAAAATATAAA
Found at i:1654 original size:171 final size:170
Alignment explanation
Indices: 1248--2012 Score: 429
Period size: 171 Copynumber: 4.5 Consensus size: 170
1238 NNNNNNNACC
* * *
1248 TAAAATCAATTATGAGATTATAAAACTATTTAAAGTAAGTAATAAGGC-TTTCAAGGGCATT-GG
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAAGCTTTTCAA-GGC-TTGGG
** * * * ** ** *
1311 TGACTATAAATGGACTTTTCATGTCAATGAATGGCTTTTTCTTCATGTTTCTGAAGGTAGACATT
64 TGACTATAAATGGACTTTTCATACCAATGAATAGCTTTTTCTTCACGTCTCCCAAGACAGAAATT
* *
1376 CAATATAATCTGTTTTAACTAAAAATATAAAAAAATTCAACN
129 CAATATAATCTATTTTAACTAAAAATATAAAAAAATTCAACT
********* * * ****
1418 NNNNNNNNNTTATGAGATTATAAAACCATTTAAAGTGAGTAATAAAGTTTTTTAAAAAATGGGTG
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAAGCTTTTCAAGGCTTGGGTG
* * * *
1483 ACTATAAGTGGACTTTTCTTACCATTGAATAGCTTTTTCTTTACGTCTCCCAAGACAGAAATTCA
66 ACTATAAATGGACTTTTCATACCAATGAATAGCTTTTTCTTCACGTCTCCCAAGACAGAAATTCA
1548 ATTATAATCTATTTTAA-TCAAAAATATAAAAAAATTCAACT
131 A-TATAATCTATTTTAACT-AAAAATATAAAAAAATTCAACT
* * * * * *
1589 TAAAATCCATTATTAGATCATAAAACCATTTGAAGTGAGTAATAATGCTTTTGAAGGCTTGGGTG
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAAGCTTTTCAAGGCTTGGGTG
* * ** ***************** * *
1654 ACTATAAATAGATTTTTTTTGNNNNNNNNNNNNNNNNTATTC-CTGGT-TCCCAATG-CAGACAT
66 ACTATAAATGGACTTTTCATACCAATGAATAGCTTTTTCTTCAC--GTCTCCCAA-GACAGAAAT
* * * * * *
1716 TCAATAATAATATGTTTTAAC-CAAAATGTAAAAAACTTCTACT
128 TCAAT-ATAATCTATTTTAACTAAAAATATAAAAAAATTCAACT
* * * ** *
1759 TAAAATCAATTATGAAATTATAAAACCATTTAAAGTGAGTAGTAATGC-TTTCGAAGGAATGAGT
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAAGCTTTTC-AAGGCTTGGGT
* * * * * * * *** * *
1823 GACTATAAATGAACTTTTCACT-CCAATGAATGGATTTTGCTTTATGTTTCTTGAGATAGACATT
65 GACTATAAATGGACTTTTCA-TACCAATGAATAGCTTTTTCTTCACGTCTCCCAAGACAGAAATT
* *
1887 CAATTATAAT-AATTTTAA-TCAAAAATATAAAAAAAATTTAACT
129 CAA-TATAATCTATTTTAACT-AAAAATAT-AAAAAAATTCAACT
* * * * * * * *
1930 TAAAATCAAGTATGAGATTATAAAACTATTTAGAGCGAGTAATAATA-TTTTTGAAGGCATGAGT
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAA-AGCTTTTCAAGGCTTGGGT
* *
1994 TACTATAAATGAACTTTTC
65 GACTATAAATGGACTTTTC
2013 TCTCTAANNN
Statistics
Matches: 435, Mismatches: 140, Indels: 39
0.71 0.23 0.06
Matches are distributed among these distances:
169 13 0.03
170 203 0.47
171 213 0.49
172 6 0.01
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.35
Consensus pattern (170 bp):
TAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAAGCTTTTCAAGGCTTGGGTG
ACTATAAATGGACTTTTCATACCAATGAATAGCTTTTTCTTCACGTCTCCCAAGACAGAAATTCA
ATATAATCTATTTTAACTAAAAATATAAAAAAATTCAACT
Found at i:2962 original size:170 final size:170
Alignment explanation
Indices: 2592--5301 Score: 2316
Period size: 171 Copynumber: 15.9 Consensus size: 170
2582 NNNNNNNNNN
* * * **
2592 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGCATGAGTGACTATAAATATACTTTTCTT-
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTG
** * * * * *
2656 CTTGATGAATGGCTTTTTCTTTATGTTTCCTGAGGTGGACATTCAATTGTAACCTGTTTTAACCA
66 C-CAATGAATGGC-TTTTCTTCATGTTTCCTAAGGTAGACATTCAATTATAATCTGTTTTAACCA
* * * * * *
2721 AAACTATAAAAAAAATCAAGTTAAAATCAATTGTGGGATTAT
129 AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * * * *
2763 AAAACCATTCAAAGTGAGTAATAAGGCTTTTGAAAGAATGAGTGACTATAAATAGACTTTTCTTG
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTG
* * * * * * *
2828 CCAATGAGTGGCTTTTCTTGATGTCTCCTGAGGCAGACATTCAATTATAATCTATTTTAACAAAA
66 CCAATGAATGGCTTTTCTTCATGTTTCCTAAGGTAGACATTCAATTATAATCTGTTTTAACCAAA
* *
2893 AATATCAAAAAATTCAACTTAAAATCAATTATGAGATTAT
131 AATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * * * * * *
2933 AAAACCACTCAAAGCAAGTAATGAGGCTTTCGAAGGCATGGGTGACTATAAATGAACTTTTCTTG
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTG
* * * * *
2998 TCAATGAATGGCTTTTTCTTCACGTTTTCTAAGGTA-ATCTTTCAATTATAATCTGTTTTGACCA
66 CCAATGAATGGC-TTTTCTTCATGTTTCCTAAGGTAGA-CATTCAATTATAATCTGTTTTAACCA
* * * * * *
3062 GAAATGTAAAAAAACT-AAATGTAAAATTAATTATGTGATTGT
129 AAAATGTAAAAAAATTCAACT-TAAAATCAATTATGAGATTAT
* * *
3104 AAAACTATTTAAAGCGAGTAATAAGGCTTTCGAAGGTATGGGTGACTATAAATGGA-TTATT-TT
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTT-TTCTT
** * * * * * * * * * * *
3167 CGTAAATCAATGGCTTTTCTTCACGTCT-CTCGATGCAGACATTCAACTATAATATATTTGAATC
65 -GCCAATGAATGGCTTTTCTTCATGTTTCCT-AAGGTAGACATTCAATTATAATCTGTTTTAACC
* * * *
3231 AAAAATATAAAAAAATTAAACTTAAAGTCAATTATGAGAGTAT
128 AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * * * * ** *
3274 AAAATCATTTGGAA-CGAGTAATATGACTTTCGAAGGCTTGGGAGACTATAAATGGACTTTTCTT
1 AAAACCATTT-AAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTT
* ** * * * *
3338 GCAAATGAATATCTTGTTCTTCATGTGTCCTTAGG-AGACATT-AAAT-TAATCTATTTTAACCA
65 GCCAATGAATGGCTT-TTCTTCATGTTTCCTAAGGTAGACATTCAATTATAATCTGTTTTAACCA
* * *
3400 AATATGTAAAAAAATCCAACCTAAAATCAATTAT-ATGATTAT
129 AAAATGTAAAAAAATTCAACTTAAAATCAATTATGA-GATTAT
* * ** * * * *
3442 AAAACCATTTAAAGTGAGTAACAAGATTTTTGAAGGTATGGGTGA-TAATAAATGAAGTTTTTTT
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACT-ATAAATGGACTTTTCTT
** * * * * * * *
3506 ATCTATGAATGGCTTTT-TTACATTTTTCCCAAGGAAAACATTCAATTATCATTTGTTTTAACCA
65 GCCAATGAATGGCTTTTCTT-CATGTTTCCTAAGGTAGACATTCAATTATAATCTGTTTTAACCA
*
3570 AAAATGTAAAAAAATTCAACTTAAAATGAATTATGAGATTAT
129 AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * * *
3612 AAAACCATTTAAAGCGAGTAATAAGACTTTGGAAGGAATGGGTGGCTATAAATGAACTTTTCTTG
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTG
* * * * *
3677 TCAATCAATAGCTATTTCTTCATGTTTGCC-AAGGTAGACATGCAATTATAATTTGTTTTAACCA
66 CCAATGAATGGCT-TTTCTTCATGTTT-CCTAAGGTAGACATTCAATTATAATCTGTTTTAACCA
*
3741 AAAATGTAAAAAAATTCAACTTAAAATCAAATATGAGATTAT
129 AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * * * *
3783 GAAACCATTTAAAGCGAGTGATAAGACTTCTGAAGGAATTGGTGACTATAAATGGACTTTTCTTG
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTG
** * * * * * *
3848 CCAATGAATACCTTTTTCTTCACGTTTCCTAAGGCAAACATTCAA-T-TAATCTATTTTTACTAA
66 CCAATGAATGGC-TTTTCTTCATGTTTCCTAAGGTAGACATTCAATTATAATCTGTTTTAACCAA
* * *
3911 AAATATAAAAAAAATTC-TC-TAAAATCAATTAT-ATAATTAT
130 AAATGT-AAAAAAATTCAACTTAAAATCAATTATGA-GATTAT
* * * ** * * *
3951 AAAACTATTTATAGTGAGTAATAAGGCTTTTGAAGGAGA-AAGTGACTATAAGTGGAGTTTTCTA
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGA-ATGGGTGACTATAAATGGACTTTTCTT
* * * * * * * * *
4015 ACTAATGATTGCCTTTTGCTTCATGTTTCTTGAGGTAGAGATTCAATTGTAATCTGTTTTAACAA
65 GCCAATGAATGGCTTTT-CTTCATGTTTCCTAAGGTAGACATTCAATTATAATCTGTTTTAACCA
* * * *
4080 AAAATGTAAAAAAATTCAACCTAAAACCAATTCTGTGATTAT
129 AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * * * *
4122 AAAACCATTTAAAACGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGAACTTGTCTT-
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTG
* * * * * * *
4186 CTAGATGAATGGCTTTTTCTTCATATCTT-CTAAGGCAGACATTCAATTGTAACCTGTTTTAGCT
66 CCA-ATGAATGGC-TTTTCTTCATGT-TTCCTAAGGTAGACATTCAATTATAATCTGTTTTAACC
* *
4250 AAAAAAGTAAAAAAAAATT-AACTTAAAATCAA-TAGTGGGATTAT
128 AAAAATGT--AAAAAAATTCAACTTAAAATCAATTA-TGAGATTAT
* * * * *
4294 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAAAGAATTTTTCTTA
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTG
* ** **
4359 CCAATGAATGGCTTTTCTTCACGTTT-CTTGGGATAGACATTCAATTATAATCTGTTTTAATGAA
66 CCAATGAATGGCTTTTCTTCATGTTTCCTAAGG-TAGACATTCAATTATAATCTGTTTTAACCAA
* *
4423 AAATGTCAAAAAATTCAACTTAAAATGAATTATGAGATTAT
130 AAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * * * * * * *
4464 AAAACCACTTAAAGCAAGTAATAAGGCTTTCGAAGGTATGGCTAATTATAAATAGACTTTTCTTG
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTG
* *
4529 TCAATGAATGGCTTTTTCTTCATGTTTTCC-AAGGTA-ATCTTTCAATTATAATCTGTTTTAACC
66 CCAATGAATGGC-TTTTCTTCATG-TTTCCTAAGGTAGA-CATTCAATTATAATCTGTTTTAACC
* * * * * *
4592 AAAAATATAAAAAAACTCAACCTAAAATTAATTGTG-G-TTAG
128 AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * * * * ** *
4633 AAAACTATTTAAAGCTAGTAATAAGACTTTCGAAGGCATGGGTGACTATAAATAAACTATTT-TC
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACT-TTTCTT
* * * * * * * * **
4697 GTCAATCAATGGCTTTTCTTCACGTCTCCTGAGGTAGACACTCAATTATAATATATTTTAATTAA
65 GCCAATGAATGGCTTTTCTTCATGTTTCCTAAGGTAGACATTCAATTATAATCTGTTTTAACCAA
* * * * *
4762 AAATATAAAAAAACTGAACTTAAAGTCGATTATGAGATTAT
130 AAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * * * * *
4803 AAAACTATTTAGAGCGAGTAATATGGCTTTCGAA-GACTTGGGTGACTGTAAATGGACTTTTCTT
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGA-ATGGGTGACTATAAATGGACTTTTCTT
* * ** * * * * **
4867 GCAAATAAATACCATTTTCTTCATGTTTCCCAAGGTAGATATT-AAAT-TAATCTATTTTAGTCA
65 GCCAATGAATGGC-TTTTCTTCATGTTTCCTAAGGTAGACATTCAATTATAATCTGTTTTAACCA
* **
4930 AAAATGTAAAAAAATTCAACCTCGAATCAATTAT-ATGATTAT
129 AAAATGTAAAAAAATTCAACTTAAAATCAATTATGA-GATTAT
* * * * * * * *
4972 AAAATCATTTAAAGTGAGTGACAAGGCTTTTAAAGGTATGAGG-GA-TAATAAATGCAGTTTTCT
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATG-GGTGACT-ATAAATGGACTTTTCT
** * * * * * * *
5035 TATCAATGAATGGGTTTT-TACATATTTTCC-ATGGCAGATATTCAATTATAAT-TATTTTTAAC
64 TGCCAATGAATGGCTTTTCTTCAT-GTTTCCTAAGGTAGACATTCAATTATAATCT-GTTTTAAC
* * * * *
5097 TAAAAATGCAAAACAATTCAGCTTAAAATGAATTATGAGATTAT
127 CAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * * *
5141 AAAACCATTTAAAACGAGTAATAAGGC-TTTGAAAAGAATGAGTGGCTATAAATGGACTTTT-TC
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTTG-AAGGAATGGGTGACTATAAATGGACTTTTCT-
* * * * * * * * *
5204 TGTCAATTAATGGCTTTTTTTTCATGTTTTCTGAGGCAGACATGCAATTATAATTTGTTTTAACT
64 TGCCAATGAATGGC-TTTTCTTCATGTTTCCTAAGGTAGACATTCAATTATAATCTGTTTTAACC
5269 AAAAATGTAAAAAAATTCAACTTAAAATCAATT
128 AAAAATGTAAAAAAATTCAACTTAAAATCAATT
5302 NNNNNNNNNN
Statistics
Matches: 2050, Mismatches: 412, Indels: 154
0.78 0.16 0.06
Matches are distributed among these distances:
166 2 0.00
167 39 0.02
168 289 0.14
169 307 0.15
170 600 0.29
171 696 0.34
172 105 0.05
173 12 0.01
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.35
Consensus pattern (170 bp):
AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTG
CCAATGAATGGCTTTTCTTCATGTTTCCTAAGGTAGACATTCAATTATAATCTGTTTTAACCAAA
AATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
Found at i:3237 original size:341 final size:342
Alignment explanation
Indices: 2592--5301 Score: 2357
Period size: 339 Copynumber: 8.0 Consensus size: 342
2582 NNNNNNNNNN
* * *
2592 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGCATGAGTGACTATAAAT-ATACTTTTCTT
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGA-ACTTTTCTT
* ** * * * *
2656 CTTGATGAATGGCTTTTTCTTTATGTTTCCTGAGGTGGACATTCAATTGTAACCTGTTTTAACCA
65 GTCAATGAATGGCTTTTTCTTCATGTTTCCTGAGGTAGACATTCAATTATAATCTGTTTTAACCA
* * * * * * * *
2721 AAACTATAAAAAAAATCAAGTTAAAATCAATTGTGGGATTATAAAACCATTCAAAGTGAGTAATA
130 AAAATGTAAAAAAATTCAAATTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * * * * * *
2786 AGGCTTTTGAAAGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAGTGGC-TTTTCTTGAT
195 AGGCTTTCGAAGGTATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTTCAT
* *
2850 GTCTC-CTGAGGCAGACATTCAATTATAATCTATTTTAACAAAAAATATCAAAAAATTCAACTTA
260 GTCTCTCTAAGGCAGACATTCAATTATAATCTATTTTAAC-AAAAATATAAAAAAATTCAACTTA
2914 AAATCAATTATGAGATTAT
324 AAATCAATTATGAGATTAT
* * * *
2933 AAAACCACTCAAAGCAAGTAATGAGGCTTTCGAAGGCATGGGTGACTATAAATGAACTTTTCTTG
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGAACTTTTCTTG
* * * * *
2998 TCAATGAATGGCTTTTTCTTCACGTTTTCTAAGGTA-ATCTTTCAATTATAATCTGTTTTGACCA
66 TCAATGAATGGCTTTTTCTTCATGTTTCCTGAGGTAGA-CATTCAATTATAATCTGTTTTAACCA
* * * * * *
3062 GAAATGTAAAAAAACT-AAATGTAAAATTAATTATGTGATTGTAAAACTATTTAAAGCGAGTAAT
130 AAAATGTAAAAAAATTCAAAT-TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* *
3126 AAGGCTTTCGAAGGTATGGGTGACTATAAATGGA-TTATT-TTCGTAAATCAATGGC-TTTTCTT
194 AAGGCTTTCGAAGGTATGGGTGACTATAAATGGACTT-TTCTT-GTCAATGAATGGCTTTTTCTT
* * * * * * *
3188 CACGTCTCTC-GATGCAGACATTCAACTATAATATATTTGAATCAAAAATATAAAAAAATTAAAC
257 CATGTCTCTCTAAGGCAGACATTCAATTATAATCTATTTTAA-CAAAAATATAAAAAAATTCAAC
* *
3252 TTAAAGTCAATTATGAGAGTAT
321 TTAAAATCAATTATGAGATTAT
* * * * * * *
3274 AAAATCATTTGGAA-CGAGTAATATGACTTTCGAAGGCTTGGGAGACTATAAATGGACTTTTCTT
1 AAAACCATTT-AAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGAACTTTTCTT
** * * * * *
3338 G-CAAATGAATATCTTGTTCTTCATGTGTCCTTAGG-AGACATT-AAAT-TAATCTATTTTAACC
65 GTC-AATGAATGGCTTTTTCTTCATGTTTCCTGAGGTAGACATTCAATTATAATCTGTTTTAACC
* * ** *
3399 AAATATGTAAAAAAATCCAACCTAAAATCAATTAT-ATGATTATAAAACCATTTAAAGTGAGTAA
129 AAAAATGTAAAAAAATTCAAATTAAAATCAATTATGA-GATTATAAAACCATTTAAAGCGAGTAA
* ** * * * * * * *
3463 CAAGATTTTTGAAGGTATGGGTGA-TAATAAATGAAGTTTTTTTATCTATGAATGGCTTTTT-TA
193 TAAGGCTTTCGAAGGTATGGGTGACT-ATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTT
* * * * * * * * *
3526 CATTTTTC-CCAAGGAAAACATTCAATTATCATTTGTTTTAACCAAAAATGTAAAAAAATTCAAC
257 CATGTCTCTCTAAGGCAGACATTCAATTATAATCTATTTTAA-CAAAAATATAAAAAAATTCAAC
*
3590 TTAAAATGAATTATGAGATTAT
321 TTAAAATCAATTATGAGATTAT
* * * *
3612 AAAACCATTTAAAGCGAGTAATAAGACTTTGGAAGGAATGGGTGGCTATAAATGAACTTTTCTTG
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGAACTTTTCTTG
* * * * * *
3677 TCAATCAATAGCTATTTCTTCATGTTTGCC-AAGGTAGACATGCAATTATAATTTGTTTTAACCA
66 TCAATGAATGGCTTTTTCTTCATGTTT-CCTGAGGTAGACATTCAATTATAATCTGTTTTAACCA
* * * *
3741 AAAATGTAAAAAAATTCAACTTAAAATCAAATATGAGATTATGAAACCATTTAAAGCGAGTGATA
130 AAAATGTAAAAAAATTCAAATTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * * **
3806 AGAC-TTCTGAAGGAATTGGTGACTATAAATGGACTTTTCTTGCCAATGAATACCTTTTTCTTCA
195 AGGCTTTC-GAAGGTATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTTCA
* * * * *
3870 CGTTTC-CTAAGGCAAACATTCAA-T-TAATCTATTTTTACTAAAAATATAAAAAAAATTC-TC-
259 TGTCTCTCTAAGGCAGACATTCAATTATAATCTATTTTAAC-AAAAATAT-AAAAAAATTCAACT
*
3930 TAAAATCAATTAT-ATAATTAT
322 TAAAATCAATTATGA-GATTAT
* * * * * * * *
3951 AAAACTATTTATAGTGAGTAATAAGGCTTTTGAAGG-A-GAAAGTGACTATAAGTGGAGTTTTC-
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATG--GGTGACTATAAATGAACTTTTCT
** * * * * * *
4013 TAACTAATGATTGCCTTTTGCTTCATGTTTCTTGAGGTAGAGATTCAATTGTAATCTGTTTTAAC
64 TGTC-AATGAATGGCTTTTTCTTCATGTTTCCTGAGGTAGACATTCAATTATAATCTGTTTTAAC
* ** * * * *
4078 AAAAAATGTAAAAAAATTCAACCTAAAACCAATTCTGTGATTATAAAACCATTTAAAACGAGTAA
128 CAAAAATGTAAAAAAATTCAAATTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAA
* * * *
4143 TAAGGCTTTCGAAGGCATGGGTGACTATAAATGAACTTGTCTTCT-AGATGAATGGCTTTTTCTT
193 TAAGGCTTTCGAAGGTATGGGTGACTATAAATGGACTTTTCTTGTCA-ATGAATGGCTTTTTCTT
* * * * * *
4207 CATATCT-TCTAAGGCAGACATTCAATTGTAACCTGTTTTAGCTAAAAAAGTAAAAAAAAATT-A
257 CATGTCTCTCTAAGGCAGACATTCAATTATAATCTATTTTAAC--AAAAA-TATAAAAAAATTCA
*
4270 ACTTAAAATCAA-TAGTGGGATTAT
319 ACTTAAAATCAATTA-TGAGATTAT
* * * * * *
4294 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAAAGAATTTTTCTTA
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGAACTTTTCTTG
* * * **
4359 CCAATGAATGGC-TTTTCTTCACGTTTCTTG-GGATAGACATTCAATTATAATCTGTTTTAATGA
66 TCAATGAATGGCTTTTTCTTCATGTTTCCTGAGG-TAGACATTCAATTATAATCTGTTTTAACCA
* * * * *
4422 AAAATGTCAAAAAATTCAACTTAAAATGAATTATGAGATTATAAAACCACTTAAAGCAAGTAATA
130 AAAATGTAAAAAAATTCAAATTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * *
4487 AGGCTTTCGAAGGTATGGCTAATTATAAATAGACTTTTCTTGTCAATGAATGGCTTTTTCTTCAT
195 AGGCTTTCGAAGGTATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTTCAT
* * * * * * *
4552 GT-TTTCCAAGGTA-ATCTTTCAATTATAATCTGTTTTAACCAAAAATATAAAAAAACTCAACCT
260 GTCTCTCTAAGGCAGA-CATTCAATTATAATCTATTTTAA-CAAAAATATAAAAAAATTCAACTT
* * *
4615 AAAATTAATTGTG-G-TTAG
323 AAAATCAATTATGAGATTAT
* * * * *
4633 AAAACTATTTAAAGCTAGTAATAAGACTTTCGAAGGCATGGGTGACTATAAATAAACTATTT-TC
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGAACT-TTTCTT
* * * * * * **
4697 GTCAATCAATGGC-TTTTCTTCACGTCTCCTGAGGTAGACACTCAATTATAATATATTTTAATTA
65 GTCAATGAATGGCTTTTTCTTCATGTTTCCTGAGGTAGACATTCAATTATAATCTGTTTTAACCA
* * * * * * * *
4761 AAAATATAAAAAAACTGAACTTAAAGTCGATTATGAGATTATAAAACTATTTAGAGCGAGTAATA
130 AAAATGTAAAAAAATTCAAATTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * * ** *
4826 TGGCTTTCGAAGACT-TGGGTGACTGTAAATGGACTTTTCTTG-CAAATAAATACCATTTTCTTC
195 AGGCTTTCGAAG-GTATGGGTGACTATAAATGGACTTTTCTTGTC-AATGAATGGCTTTTTCTTC
* * * * * * * *
4889 ATGTTTC-CCAAGGTAGATATT-AAAT-TAATCTATTTTAGTCAAAAATGTAAAAAAATTCAACC
258 ATGTCTCTCTAAGGCAGACATTCAATTATAATCTATTTTA-ACAAAAATATAAAAAAATTCAACT
**
4951 TCGAATCAATTAT-ATGATTAT
322 TAAAATCAATTATGA-GATTAT
* * * * ** * * *
4972 AAAATCATTTAAAGTGAGTGACAAGGCTTTTAAAGGTATGAGG-GA-TAATAAATGCAGTTTTCT
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATG-GGTGACT-ATAAATGAACTTTTCT
* * * * * *
5035 TATCAATGAATGGGTTTTTACAT-AT-TTTCC--ATGGCAGATATTCAATTATAAT-TATTTTTA
64 TGTCAATGAATGGCTTTTT-CTTCATGTTTCCTGA-GGTAGACATTCAATTATAATCT-GTTTTA
* * * ** * *
5095 ACTAAAAATGCAAAACAATTCAGCTTAAAATGAATTATGAGATTATAAAACCATTTAAAACGAGT
126 ACCAAAAATGTAAAAAAATTCAAATTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * *
5160 AATAAGGCTTT-GAAAAGAATGAGTGGCTATAAATGGACTTTT-TCTGTCAATTAATGGCTTTTT
191 AATAAGGCTTTCG-AAGGTATGGGTGACTATAAATGGACTTTTCT-TGTCAATGAATGGCTTTTT
* * * * * * *
5223 TTTCATGT-TTTCTGAGGCAGACATGCAATTATAATTTGTTTTAACTAAAAATGTAAAAAAATTC
254 CTTCATGTCTCTCTAAGGCAGACATTCAATTATAATCTATTTTAAC-AAAAATATAAAAAAATTC
5287 AACTTAAAATCAATT
318 AACTTAAAATCAATT
5302 NNNNNNNNNN
Statistics
Matches: 1909, Mismatches: 380, Indels: 161
0.78 0.16 0.07
Matches are distributed among these distances:
337 51 0.03
338 394 0.21
339 543 0.28
340 105 0.06
341 506 0.27
342 227 0.12
343 78 0.04
344 4 0.00
345 1 0.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.35
Consensus pattern (342 bp):
AAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGAACTTTTCTTG
TCAATGAATGGCTTTTTCTTCATGTTTCCTGAGGTAGACATTCAATTATAATCTGTTTTAACCAA
AAATGTAAAAAAATTCAAATTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAA
GGCTTTCGAAGGTATGGGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTTCATG
TCTCTCTAAGGCAGACATTCAATTATAATCTATTTTAACAAAAATATAAAAAAATTCAACTTAAA
ATCAATTATGAGATTAT
Found at i:6360 original size:170 final size:170
Alignment explanation
Indices: 6009--6379 Score: 464
Period size: 170 Copynumber: 2.2 Consensus size: 170
5999 NNNNNNNNNT
** * *
6009 ATTCAATTATAATATATTTTAATAAAAAATATAAAAAAATTTAACTTAAAATCTAGTATGAGATT
1 ATTCAATTATAATATATTTTAACCAAAAATATAAAAAAATTCAACCTAAAATCTAGTATGAGATT
* * *
6074 ATAAAACTATTTAAAGCGAGTAATAATATTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCT
66 ATAAAACTATTTAAAGCGAGTAATAAGACTTTCGAAGGCATGAGTGACTACAAATGAACTTTTCT
* * *
6139 CTCCAATGGATGGCTTTGCTTCATATTTCTAGAGATAGAC
131 CTCCAATGAATGGCTTTGCCTCATATTTCTAGAGATAAAC
* * *
6179 ATTTAATTATAATATATTTTAACCAAAAATGTAAAAAAATTCAACCTAAAAT-TAATTATGAGAT
1 ATTCAATTATAATATATTTTAACCAAAAATATAAAAAAATTCAACCTAAAATCT-AGTATGAGAT
* * * *
6243 TATAAAA-TCATTTAAGGCGAGTAATAAGGCTTTCGAATG-ATGAGTGACTACAAATGTACTTTT
65 TATAAAACT-ATTTAAAGCGAGTAATAAGACTTTCGAAGGCATGAGTGACTACAAATGAACTTTT
* * *
6306 CT-TGCCAATGAATGGCTTTTTCCTCATGTTTCTTA-ATATAAAC
129 CTCT-CCAATGAATGGC-TTTGCCTCATATTTC-TAGAGATAAAC
* *
6349 ATTCGATTATAATATATTTTAACCAACAATA
1 ATTCAATTATAATATATTTTAACCAAAAATA
6380 NNNNNNNNNN
Statistics
Matches: 172, Mismatches: 24, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
168 1 0.01
169 37 0.22
170 132 0.77
171 2 0.01
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.36
Consensus pattern (170 bp):
ATTCAATTATAATATATTTTAACCAAAAATATAAAAAAATTCAACCTAAAATCTAGTATGAGATT
ATAAAACTATTTAAAGCGAGTAATAAGACTTTCGAAGGCATGAGTGACTACAAATGAACTTTTCT
CTCCAATGAATGGCTTTGCCTCATATTTCTAGAGATAAAC
Found at i:7006 original size:171 final size:170
Alignment explanation
Indices: 6550--7020 Score: 491
Period size: 170 Copynumber: 2.8 Consensus size: 170
6540 NNNNNNNNNN
* * * *
6550 CATTCAATTATAATCTA-TTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCCATTATTAGA
1 CATTCAATTATAATATAGTTTTAA-CAAAAATGT-AAAAAATTTAACTTAAAATCAATTATGAGA
* * * *
6614 TCATAAAATCATTTAAAGCGAGTAATAATGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTT
64 TTATAAAATCATTTAAAGTGAGTAATAATGCTTTCGAAGGCTTAGGTGACTATAAATGAACTTTT
* * * *
6679 CTTGCTAATGAATGGCTTTTTATTCCTGATTCCCAAGGCAGA
129 CCTGCCAATGAATGGCTTTTGATTCCTGATTCCCAAGACAGA
* * *
6721 CATTCAATAATAAAAT-GTTTTAACTAAAATGTAAAAAACTTCT-ACTTAAAATCAATTATGAGA
1 CATTCAATTATAATATAGTTTTAACAAAAATGTAAAAAA-TT-TAACTTAAAATCAATTATGAGA
* * * * * *
6784 TTATAAAAGCATTTAAAGTGAGTAGTAATGCTTTCAAAGGCATAAGTGACTATAAATAAACTTTT
64 TTATAAAATCATTTAAAGTGAGTAATAATGCTTTCGAAGGCTTAGGTGACTATAAATGAACTTTT
* ************ *
6849 CACT-CCAATGAATGGCTTTTGCTNNNNNNNNNNTGAGATAGA
129 C-CTGCCAATGAATGGCTTTTGATTCCTGATTCCCAAGACAGA
*
6891 CATTCAATTATAATATAGTTTTATCAAAAATGTAAAAATATTTAACTTAAAATCAATTATGAGAT
1 CATTCAATTATAATATAGTTTTAACAAAAATGTAAAAA-ATTTAACTTAAAATCAATTATGAGAT
* * ** *
6956 TACAAAATCATTTAAAGTAAGTAATAGGGCTTTCGAAGGCTTAGGTGACTATAAATGAGCTTTTC
65 TATAAAATCATTTAAAGTGAGTAATAATGCTTTCGAAGGCTTAGGTGACTATAAATGAACTTTTC
7021 TTACAAATAA
Statistics
Matches: 243, Mismatches: 50, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
169 6 0.02
170 120 0.49
171 116 0.48
172 1 0.00
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.34
Consensus pattern (170 bp):
CATTCAATTATAATATAGTTTTAACAAAAATGTAAAAAATTTAACTTAAAATCAATTATGAGATT
ATAAAATCATTTAAAGTGAGTAATAATGCTTTCGAAGGCTTAGGTGACTATAAATGAACTTTTCC
TGCCAATGAATGGCTTTTGATTCCTGATTCCCAAGACAGA
Done.