Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398595.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1886.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2312
ACGTcount: A:0.22, C:0.08, G:0.07, T:0.22

Warning! 948 characters in sequence are not A, C, G, or T


Found at i:662 original size:170 final size:171

Alignment explanation


    Indices: 402--734  Score: 404
    Period size: 170  Copynumber: 2.0  Consensus size: 171

        392 NNNNNNNNNN

                      *                       *                              
        402 AATCTCATAATTGATTTTAAGTTGAATTTGTTTATATTTTTCTTTAAAACAGACTATAATAGAAA
          1 AATCTCATAACTGATTTTAAGTTGAATTTGTTTACATTTTTCTTTAAAACAGACTATAATAGAAA

              * *     *    *  *           *                       **  *      
        467 GTTTGCCTTAGGAAAGGTGTAGAAAAAGCCTTTCATTGAAAAGAAAAATCTATTTTTATTCACCT
         66 GTCTACCTTAAGAAACGTATAGAAAAAGCCATTCATTGAAAAGAAAAATCTATTAATAGTCACCT

                *                  * *               
        532 ATTCTTTC-AAAGCCTTATTACTTGGTTTAAATTATTTTAT
        131 ATTCCTTCAAAAGCCTTATTACTCGCTTTAAATTATTTTAT

                                                              *           *  
        572 AATCTCATAACTGATTTTAAGTTGAACTTTG-TTACATTTTTCTTTAAAATAGA-TAATAATTGA
          1 AATCTCATAACTGATTTTAAGTTGAA-TTTGTTTACATTTTTCTTTAAAACAGACT-ATAATAGA

             *      *                           *     *       * *            
        635 TTA-TCTATCTTAAGAAACGTATAGAAAAAGCCATTGATTGAGAAGAAAAGTTTATTAATAGTCA
         64 -AAGTCTACCTTAAGAAACGTATAGAAAAAGCCATTCATTGAAAAGAAAAATCTATTAATAGTCA

                            *                   
        699 CCTATTCCTTCAAAAGGCTTATTACTCGCTTTAAAT
        128 CCTATTCCTTCAAAAGCCTTATTACTCGCTTTAAAT

        735 AATTNNNNNN


Statistics
Matches: 136,  Mismatches: 23, Indels: 7
        0.82            0.14        0.04

Matches are distributed among these distances:
 169    1  0.01
 170  109  0.80
 171   26  0.19

ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40


Consensus pattern (171 bp):   
AATCTCATAACTGATTTTAAGTTGAATTTGTTTACATTTTTCTTTAAAACAGACTATAATAGAAA
GTCTACCTTAAGAAACGTATAGAAAAAGCCATTCATTGAAAAGAAAAATCTATTAATAGTCACCT
ATTCCTTCAAAAGCCTTATTACTCGCTTTAAATTATTTTAT
Done.