Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398621.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1908.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 730

Length: 1218
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.17

Warning! 598 characters in sequence are not A, C, G, or T


Found at i:1046 original size:172 final size:171

Alignment explanation


    Indices: 734--1141  Score: 464
    Period size: 172  Copynumber: 2.4  Consensus size: 171

        724 NNNNNNNNNN

                                                                      *      
        734 TTTCAAAGGCTTGAGTGACTATAAATAGACTTTTCTCTCCAATGGATGGCTTTTACTTTACGTTT
          1 TTTCAAAGGCTTGAGTGACTATAAATAGACTTTTCTCTCCAATGGATGGCTTTTACTTCACGTTT

                                                               *             
        799 CCCAAAATAGACATTCAATTATAGAATATTTTAACAAAAAATGTAAAAAAACCTAACTTAAAATC
         66 CCCAAAATAGACATTCAATTATAGAATATTTTAACAAAAAATGTAAAAAAAACTAACTTAAAATC

               *                        **  *        
        864 AATTATGAGAGAATAAAACTATTTAAAGTGACTAATAAGGC
        131 AATAATGAGAGAATAAAACTATTTAAAGCAACAAATAAGGC

                      *   *  *                      *              *         
        905 TTTCAAAGGTTTTGTGTTACTATAAATAGACTTTTCTCTCTAATGGATGGCTTTTGCTTCACGTT
          1 TTTCAAAGG-CTTGAGTGACTATAAATAGACTTTTCTCTCCAATGGATGGCTTTTACTTCACGTT

              *    **    *   *    *               *                          
        970 T-TCAGAGGTAGATATTTAATTGTA-ATATATTTTAACTAAAAATGTAAAAAAATAC-AACTTAA
         65 TCCCA-AAATAGACATTCAATTATAGA-ATATTTTAACAAAAAATGTAAAAAAA-ACTAACTTAA

               *           *  *                *         
       1032 AATTAATAATGAGAGTATGAAACTATTTAAAGCAAGAAATAAGGC
        127 AATCAATAATGAGAGAATAAAACTATTTAAAGCAACAAATAAGGC

                  *    *     * *     *          *   *   *         *     *    
       1077 TTTCAAGGGCTAGAGTGGCAATAAACAGACTTTT-TTTCCCATGTATGGCTTTTGCTTCATGTTT
          1 TTTCAAAGGCTTGAGTGACTATAAATAGACTTTTCTCTCCAATGGATGGCTTTTACTTCACGTTT

             
       1141 C
         66 C

       1142 TTGAGGCAGA


Statistics
Matches: 197,  Mismatches: 35, Indels: 10
        0.81            0.14        0.04

Matches are distributed among these distances:
 170   25  0.13
 171   30  0.15
 172  141  0.72
 173    1  0.01

ACGTcount: A:0.37, C:0.13, G:0.14, T:0.35


Consensus pattern (171 bp):   
TTTCAAAGGCTTGAGTGACTATAAATAGACTTTTCTCTCCAATGGATGGCTTTTACTTCACGTTT
CCCAAAATAGACATTCAATTATAGAATATTTTAACAAAAAATGTAAAAAAAACTAACTTAAAATC
AATAATGAGAGAATAAAACTATTTAAAGCAACAAATAAGGC
Done.